BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035119
         (73 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9M9R9|NDB3B_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B
          OS=Arabidopsis thaliana GN=At1g14450 PE=3 SV=1
          Length = 73

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%), Gaps = 3/71 (4%)

Query: 1  MGHTGEFFRRRDGWRKHPLLTSNLRQATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSH 60
          +G TGEFFRRRD WRKHP+L++ +R A PGLGI + AF +YLVGEQ+YN+ +APS S SH
Sbjct: 5  LGTTGEFFRRRDEWRKHPMLSNQMRHALPGLGIGVAAFCVYLVGEQIYNKALAPSKS-SH 63

Query: 61 HTHHQHSAASS 71
            HHQ   A S
Sbjct: 64 --HHQEQTAPS 72


>sp|O64725|NDB3A_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-A
          OS=Arabidopsis thaliana GN=At2g02510 PE=3 SV=1
          Length = 72

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 49/63 (77%)

Query: 1  MGHTGEFFRRRDGWRKHPLLTSNLRQATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSH 60
          +G TGEFFRRRD WRKHP+L++ +R A PG+GI + AF +YLVGEQ+Y++++APS   SH
Sbjct: 5  LGTTGEFFRRRDEWRKHPMLSNQMRHALPGIGIGVGAFCVYLVGEQIYSKLMAPSSQSSH 64

Query: 61 HTH 63
             
Sbjct: 65 QKQ 67


>sp|Q8L778|CESA5_ARATH Cellulose synthase A catalytic subunit 5 [UDP-forming]
           OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2
          Length = 1069

 Score = 32.7 bits (73), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 2   GHTGEFFRRRDGWRKHPLLTSNLRQATPGLGIALVAFG--IYLVGEQVYNRVIAPSPSHS 59
           G   E F RR+          +L  A PG  I L+ +G     +    +  +++PSP H 
Sbjct: 119 GLESETFSRRNS-------EFDLASAPPGSQIPLLTYGEEDVEISSDSHALIVSPSPGHI 171

Query: 60  HHTHHQHSAASSSH 73
           H  H  H    ++H
Sbjct: 172 HRVHQPHFPDPAAH 185


>sp|P33508|COX3_ANOQU Cytochrome c oxidase subunit 3 OS=Anopheles quadrimaculatus
           GN=COIII PE=3 SV=1
          Length = 262

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 14  WRKHPLLTSNLRQATPGLGIALVAFGIYLVGEQVYNRVIAP 54
           W  H L+ SN  QAT GL   +V  GIY    Q Y  + AP
Sbjct: 147 WAHHALMESNHSQATQGLFFTIV-LGIYFSILQAYEYIEAP 186


>sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis
           thaliana GN=At3g02360 PE=2 SV=1
          Length = 486

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%)

Query: 6   EFFRRRDGWRKHPLLTSNLRQATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHHQ 65
           E   R+  WR+   L  N   +TPG+  +L  F  Y       N V A       HT+ +
Sbjct: 407 EIIERQSAWRRVVCLAINSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYER 466

Query: 66  HSAASSSH 73
                S H
Sbjct: 467 TDVEGSFH 474


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,521,098
Number of Sequences: 539616
Number of extensions: 941914
Number of successful extensions: 4904
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4870
Number of HSP's gapped (non-prelim): 31
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)