Query 035119
Match_columns 73
No_of_seqs 102 out of 135
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p67_A LAO/AO transport system 80.2 0.68 2.3E-05 33.1 1.6 28 38-65 314-341 (341)
2 3dh4_A Sodium/glucose cotransp 71.3 3.6 0.00012 31.3 3.6 38 28-65 492-530 (530)
3 3kkj_A Amine oxidase, flavin-c 69.9 3.9 0.00013 24.2 2.8 25 27-51 303-327 (336)
4 2xq2_A Sodium/glucose cotransp 61.3 5.3 0.00018 30.8 2.7 20 26-45 543-562 (593)
5 4dgk_A Phytoene dehydrogenase; 48.8 14 0.00049 26.4 3.1 27 27-53 467-493 (501)
6 3v5u_A Uncharacterized membran 46.8 6.2 0.00021 28.9 1.0 35 32-66 283-320 (320)
7 1vhx_A Putative holliday junct 38.2 17 0.00058 23.7 2.0 16 35-50 123-138 (150)
8 2v8h_A Beta-alanine synthase; 37.4 27 0.00092 25.7 3.2 16 52-67 456-472 (474)
9 4dw8_A Haloacid dehalogenase-l 35.8 13 0.00046 24.3 1.2 11 39-49 260-270 (279)
10 3oc4_A Oxidoreductase, pyridin 33.0 18 0.0006 26.1 1.5 7 58-64 445-451 (452)
11 2poz_A Putative dehydratase; o 31.9 3 0.0001 30.3 -2.7 30 27-64 362-391 (392)
12 2vpt_A Lipolytic enzyme; ester 30.3 46 0.0016 21.0 3.1 32 32-63 183-214 (215)
13 3few_X Colicin S4; cell lysis, 30.2 31 0.0011 27.6 2.6 12 44-55 487-498 (505)
14 3lxz_A Glutathione S-transfera 30.1 15 0.0005 23.5 0.6 34 28-64 195-228 (229)
15 3nd0_A SLL0855 protein; CLC fa 30.1 44 0.0015 25.4 3.4 33 32-64 416-465 (466)
16 2hzs_I RNA polymerase II media 28.8 24 0.00081 17.8 1.1 7 57-63 20-26 (27)
17 1u02_A Trehalose-6-phosphate p 28.2 32 0.0011 22.6 2.1 22 39-64 217-238 (239)
18 2ptf_A Uncharacterized protein 27.9 21 0.00073 24.9 1.2 19 45-64 214-232 (233)
19 2p1j_A POLIII, DNA polymerase 27.7 35 0.0012 21.9 2.2 19 46-64 167-185 (186)
20 2l8s_A Integrin alpha-1; trans 27.6 72 0.0025 18.3 3.3 12 46-57 34-45 (54)
21 3e3v_A Regulatory protein RECX 27.1 18 0.00061 24.0 0.6 12 27-38 147-158 (177)
22 3mpo_A Predicted hydrolase of 27.0 11 0.00039 24.6 -0.3 18 40-64 261-278 (279)
23 1vry_A Glycine receptor alpha- 26.8 41 0.0014 20.3 2.2 14 34-47 41-54 (76)
24 2kpt_A Putative secreted prote 26.6 41 0.0014 21.8 2.4 13 52-64 136-148 (148)
25 1l6n_A GAG polyprotein; matrix 26.5 53 0.0018 24.5 3.2 23 41-64 267-289 (289)
26 2dw3_A Intrinsic membrane prot 26.5 89 0.0031 19.2 3.7 21 25-45 24-44 (77)
27 3i83_A 2-dehydropantoate 2-red 26.0 48 0.0016 22.9 2.7 25 39-65 296-320 (320)
28 2yhc_A BAMD, UPF0169 lipoprote 25.9 53 0.0018 20.5 2.7 13 52-64 213-225 (225)
29 2gl5_A Putative dehydratase pr 25.5 3.9 0.00014 29.8 -3.1 30 27-64 380-409 (410)
30 3bf2_A Putative lipoprotein; N 25.3 34 0.0011 22.0 1.7 23 42-64 129-151 (152)
31 2vhh_A CG3027-PA; hydrolase; 2 24.2 16 0.00055 27.0 0.0 12 56-67 393-404 (405)
32 3b5m_A Uncharacterized protein 23.8 23 0.0008 24.0 0.8 9 56-64 196-204 (205)
33 1vhk_A Hypothetical protein YQ 23.3 41 0.0014 23.7 2.0 17 48-64 251-267 (268)
34 2lck_A Mitochondrial uncouplin 22.8 14 0.00049 25.3 -0.5 26 24-49 254-284 (303)
35 2o56_A Putative mandelate race 22.8 5.6 0.00019 28.9 -2.7 30 27-64 377-406 (407)
36 3nas_A Beta-PGM, beta-phosphog 22.7 24 0.00082 21.8 0.6 16 48-63 217-232 (233)
37 3ne5_B Cation efflux system pr 22.3 32 0.0011 25.2 1.3 20 47-66 394-413 (413)
38 2pcs_A Conserved protein; stru 22.1 62 0.0021 19.5 2.4 12 53-64 150-161 (162)
39 2lrn_A Thiol:disulfide interch 21.9 59 0.002 19.1 2.3 21 44-64 132-152 (152)
40 2zi0_A Protein 2B, TAV2B; RNAI 21.2 71 0.0024 19.6 2.5 23 41-64 52-74 (75)
41 3vdx_A Designed 16NM tetrahedr 20.1 33 0.0011 24.8 0.9 16 34-49 424-440 (456)
No 1
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=80.19 E-value=0.68 Score=33.13 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCcccc
Q 035119 38 FGIYLVGEQVYNRVIAPSPSHSHHTHHQ 65 (73)
Q Consensus 38 F~vyv~~E~~~~~~~~p~~~~~hh~~~~ 65 (73)
+.-++++|.+++.+..+..|.+||.||.
T Consensus 314 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (341)
T 2p67_A 314 LSPRTGLRQLSEFIQTQYFDEGHHHHHH 341 (341)
T ss_dssp SCHHHHHHHHHHHHHC------------
T ss_pred CCHHHHHHHHHHHHhhhcccccccccCC
Confidence 5567788888888888888999988873
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=71.31 E-value=3.6 Score=31.30 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=14.5
Q ss_pred cCchhHHHHHHHHHHHHHH-HHhhhcCCCCCCCCCcccc
Q 035119 28 TPGLGIALVAFGIYLVGEQ-VYNRVIAPSPSHSHHTHHQ 65 (73)
Q Consensus 28 fPGlgig~~AF~vyv~~E~-~~~~~~~p~~~~~hh~~~~ 65 (73)
.|++.++.+.-++.+++-| +|.+++...+..+||.||+
T Consensus 492 ~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~~~~~~~~~~ 530 (530)
T 3dh4_A 492 DRSFNIAAYGIMIVLAVLYTLFWVLYKSGGSPGHHHHHH 530 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTCC------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Confidence 4555666555555555554 3445677777778877763
No 3
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=69.90 E-value=3.9 Score=24.23 Aligned_cols=25 Identities=0% Similarity=-0.199 Sum_probs=20.1
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhhh
Q 035119 27 ATPGLGIALVAFGIYLVGEQVYNRV 51 (73)
Q Consensus 27 ~fPGlgig~~AF~vyv~~E~~~~~~ 51 (73)
.+-|=|+..+...+..+++.+.+.+
T Consensus 303 a~~g~gv~~A~~sG~~aA~~I~~~L 327 (336)
T 3kkj_A 303 WCLSGRVEGAWLSGQEAARRLLEHL 327 (336)
T ss_dssp GGTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcCHHHHHHHHHHHHHHHHHHh
Confidence 4556678888889999999999865
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=61.32 E-value=5.3 Score=30.83 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=14.3
Q ss_pred hhcCchhHHHHHHHHHHHHH
Q 035119 26 QATPGLGIALVAFGIYLVGE 45 (73)
Q Consensus 26 ~~fPGlgig~~AF~vyv~~E 45 (73)
..+.++.|+++.|+|-.++=
T Consensus 543 ~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 543 WVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHCTTTHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHH
Confidence 56777888888887765543
No 5
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=48.80 E-value=14 Score=26.42 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=17.7
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhhhcC
Q 035119 27 ATPGLGIALVAFGIYLVGEQVYNRVIA 53 (73)
Q Consensus 27 ~fPGlgig~~AF~vyv~~E~~~~~~~~ 53 (73)
.+||-|+--++-.+..+++.+++.+..
T Consensus 467 t~pG~Gv~ga~~SG~~aA~~il~dL~g 493 (501)
T 4dgk_A 467 THPGAGIPGVIGSAKATAGLMLEDLIG 493 (501)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 578888888888899999999988755
No 6
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=46.76 E-value=6.2 Score=28.88 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHH-HHHHHh--hhcCCCCCCCCCccccc
Q 035119 32 GIALVAFGIYLV-GEQVYN--RVIAPSPSHSHHTHHQH 66 (73)
Q Consensus 32 gig~~AF~vyv~-~E~~~~--~~~~p~~~~~hh~~~~~ 66 (73)
--|++..++|++ |=.+.- ....|-+...||.||+|
T Consensus 283 ~eG~~ll~~Y~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 320 (320)
T 3v5u_A 283 WQGILFLALYIIAIASLRMGGGSLVPRGSRSHHHHHHH 320 (320)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccccCC
Confidence 345566666666 432221 11223355566665543
No 7
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=38.22 E-value=17 Score=23.71 Aligned_cols=16 Identities=0% Similarity=0.061 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 035119 35 LVAFGIYLVGEQVYNR 50 (73)
Q Consensus 35 ~~AF~vyv~~E~~~~~ 50 (73)
+=..++.+..|.+++.
T Consensus 123 iD~~AA~iILq~~L~~ 138 (150)
T 1vhx_A 123 IDKMAAVMILQGYLDS 138 (150)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhc
Confidence 3466778889999985
No 8
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Probab=37.44 E-value=27 Score=25.70 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=0.9
Q ss_pred cCCCCCC-CCCcccccc
Q 035119 52 IAPSPSH-SHHTHHQHS 67 (73)
Q Consensus 52 ~~p~~~~-~hh~~~~~~ 67 (73)
.+...|. .||.||.||
T Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (474)
T 2v8h_A 456 FPGDDDDKHHHHHHHHS 472 (474)
T ss_dssp CC---------------
T ss_pred CCCCccccccccccccC
Confidence 4444444 444444444
No 9
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=35.82 E-value=13 Score=24.26 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=6.1
Q ss_pred HHHHHHHHHHh
Q 035119 39 GIYLVGEQVYN 49 (73)
Q Consensus 39 ~vyv~~E~~~~ 49 (73)
+|+-++|+++.
T Consensus 260 Gv~~~i~~~~~ 270 (279)
T 4dw8_A 260 GVAEAIERIFN 270 (279)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 35566666664
No 10
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=33.01 E-value=18 Score=26.14 Aligned_cols=7 Identities=57% Similarity=1.165 Sum_probs=0.0
Q ss_pred CCCCccc
Q 035119 58 HSHHTHH 64 (73)
Q Consensus 58 ~~hh~~~ 64 (73)
++||.||
T Consensus 445 ~~~~~~~ 451 (452)
T 3oc4_A 445 EGHHHHH 451 (452)
T ss_dssp -------
T ss_pred ccccccC
Confidence 5666665
No 11
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=31.88 E-value=3 Score=30.29 Aligned_cols=30 Identities=33% Similarity=0.506 Sum_probs=13.6
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 035119 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~fPGlgig~~AF~vyv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
--||||+-+ -|..+.+...+....+||.||
T Consensus 362 ~~PGlGv~~--------d~~~l~~~~~~~~~~~~~~~~ 391 (392)
T 2poz_A 362 NGPGLGAVL--------IKRNIEPYLWASCTEGHHHHH 391 (392)
T ss_dssp CSSBTSCCB--------CHHHHGGGEEEEEC-------
T ss_pred CCCCCCcee--------CHHHHHhccCCcccCccccCC
Confidence 358988542 244555655566677777766
No 12
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=30.26 E-value=46 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 035119 32 GIALVAFGIYLVGEQVYNRVIAPSPSHSHHTH 63 (73)
Q Consensus 32 gig~~AF~vyv~~E~~~~~~~~p~~~~~hh~~ 63 (73)
|-...|=.++=.++++++....+..-..||.|
T Consensus 183 G~~~~a~~i~~~l~~~l~~~~~~~~~~~~~~~ 214 (215)
T 2vpt_A 183 GYKKIANIWYKYTIDILRALAGETQLEHHHHH 214 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhcccC
Confidence 45556666666777777776554443344433
No 13
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=30.24 E-value=31 Score=27.61 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=6.3
Q ss_pred HHHHHhhhcCCC
Q 035119 44 GEQVYNRVIAPS 55 (73)
Q Consensus 44 ~E~~~~~~~~p~ 55 (73)
+|++-+.++.|.
T Consensus 487 VeKiNnel~~~~ 498 (505)
T 3few_X 487 ADALNKEIIKPA 498 (505)
T ss_dssp HHHHHHHTSCCC
T ss_pred HHHHHHHhcCcc
Confidence 344555556664
No 14
>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*
Probab=30.15 E-value=15 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=11.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 035119 28 TPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 28 fPGlgig~~AF~vyv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
.|++.-.+..--. .+..+++++.+.+- +|||.||
T Consensus 195 ~p~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~ 228 (229)
T 3lxz_A 195 NPHMPRILADKEA--SMPAFMEMIRSGKR-EGHHHHH 228 (229)
T ss_dssp CTTHHHHHHHHHH--HHHHHHHHHHHC----------
T ss_pred ChhHHHHHhhHHH--HHHHHHHHHHhCcc-ccccccC
Confidence 4555544433322 23345555545444 3444443
No 15
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=30.06 E-value=44 Score=25.40 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHH---------HHHHHhhhcCC--------CCCCCCCccc
Q 035119 32 GIALVAFGIYLV---------GEQVYNRVIAP--------SPSHSHHTHH 64 (73)
Q Consensus 32 gig~~AF~vyv~---------~E~~~~~~~~p--------~~~~~hh~~~ 64 (73)
.+.+++.++|++ ||..++++... .+..+||.||
T Consensus 416 pl~ia~~iA~~v~~~~~~~~iY~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 465 (466)
T 3nd0_A 416 PLLVTCLVASVVAEALGGKPIYTVLLERTLAKQNRGSLVPRGSGGHHHHH 465 (466)
T ss_dssp HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHTTTTC---------------
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHhhhccCCccccCCCCCcccCC
Confidence 344555555554 44555555332 2556666665
No 16
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=28.76 E-value=24 Score=17.77 Aligned_cols=7 Identities=43% Similarity=0.871 Sum_probs=3.0
Q ss_pred CCCCCcc
Q 035119 57 SHSHHTH 63 (73)
Q Consensus 57 ~~~hh~~ 63 (73)
++.||.|
T Consensus 20 ekhhhhh 26 (27)
T 2hzs_I 20 EKHHHHH 26 (27)
T ss_dssp CCCSSCC
T ss_pred ccccccc
Confidence 3444444
No 17
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=28.21 E-value=32 Score=22.59 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCccc
Q 035119 39 GIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 39 ~vyv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
+|+-++|+++... +.++||.||
T Consensus 217 gV~~~l~~~~~~~----~~~~~~~~~ 238 (239)
T 1u02_A 217 KILKFIEMLGVQK----KQEGHHHHH 238 (239)
T ss_dssp HHHHHHHHHHHHH----C--------
T ss_pred HHHHHHHHHHHhc----ccccccccC
Confidence 4566677776542 335555554
No 18
>2ptf_A Uncharacterized protein MTH_863; structural genomics, unknown function, PSI-2, protein struct initiative; HET: FMN; 2.35A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.45.1.4
Probab=27.93 E-value=21 Score=24.88 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=3.4
Q ss_pred HHHHhhhcCCCCCCCCCccc
Q 035119 45 EQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 45 E~~~~~~~~p~~~~~hh~~~ 64 (73)
|.+.+++.. ....+||.||
T Consensus 214 ~~l~~~~~~-~~~~~~~~~~ 232 (233)
T 2ptf_A 214 RRIIQALES-KISEGHHHHH 232 (233)
T ss_dssp HHHHHHHHC-----------
T ss_pred HHHHHHHHH-HhhccccccC
Confidence 334444322 2345555554
No 19
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=27.73 E-value=35 Score=21.90 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=4.9
Q ss_pred HHHhhhcCCCCCCCCCccc
Q 035119 46 QVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 46 ~~~~~~~~p~~~~~hh~~~ 64 (73)
+++.++..-.+.+|||.||
T Consensus 167 ~l~~~l~~~~~~~~~~~~~ 185 (186)
T 2p1j_A 167 QVFLRFVEMMKKEGHHHHH 185 (186)
T ss_dssp HHHHHHTTCC---------
T ss_pred HHHHHHHHHHHhhcccccC
Confidence 3444555555666776665
No 20
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.58 E-value=72 Score=18.29 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=6.6
Q ss_pred HHHhhhcCCCCC
Q 035119 46 QVYNRVIAPSPS 57 (73)
Q Consensus 46 ~~~~~~~~p~~~ 57 (73)
.+|+|...+..+
T Consensus 34 GFFKR~~~~~~~ 45 (54)
T 2l8s_A 34 GFFKRPLKKKME 45 (54)
T ss_dssp HHTTSCCSCCCC
T ss_pred CcccCCCcchhh
Confidence 367665555433
No 21
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=27.09 E-value=18 Score=24.01 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=8.2
Q ss_pred hcCchhHHHHHH
Q 035119 27 ATPGLGIALVAF 38 (73)
Q Consensus 27 ~fPGlgig~~AF 38 (73)
+-+||...++--
T Consensus 147 ~rrGF~~~~I~~ 158 (177)
T 3e3v_A 147 LTKGFSYDIIDT 158 (177)
T ss_dssp HHTTCCHHHHHH
T ss_pred HHCCCCHHHHHH
Confidence 668888776543
No 22
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=27.01 E-value=11 Score=24.61 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=3.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCccc
Q 035119 40 IYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 40 vyv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
|+-++|+++. +++||.||
T Consensus 261 v~~~i~~~~~-------~~~~~~~~ 278 (279)
T 3mpo_A 261 VAAAIRKYAL-------NEGHHHHH 278 (279)
T ss_dssp HHHHHC-------------------
T ss_pred HHHHHHHHhc-------ccCccccC
Confidence 4445555553 25666555
No 23
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=26.77 E-value=41 Score=20.25 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 035119 34 ALVAFGIYLVGEQV 47 (73)
Q Consensus 34 g~~AF~vyv~~E~~ 47 (73)
+--+|+...-+|++
T Consensus 41 ~C~~FVF~aLlEya 54 (76)
T 1vry_A 41 VCLLFVFSALLEYA 54 (76)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33455555555543
No 24
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=26.63 E-value=41 Score=21.75 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=5.8
Q ss_pred cCCCCCCCCCccc
Q 035119 52 IAPSPSHSHHTHH 64 (73)
Q Consensus 52 ~~p~~~~~hh~~~ 64 (73)
+.|...+.||.||
T Consensus 136 ~~~~~~~~~~~~~ 148 (148)
T 2kpt_A 136 SGSSSLEHHHHHH 148 (148)
T ss_dssp CCSCCCCCCCCCC
T ss_pred CCCCcchhcccCC
Confidence 3444444444443
No 25
>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} SCOP: a.61.1.1 a.73.1.1
Probab=26.55 E-value=53 Score=24.45 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccc
Q 035119 41 YLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 41 yv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
.+|..++. ++|+|-+.-.||.||
T Consensus 267 IlgL~kiv-rmy~p~si~~~~~~~ 289 (289)
T 1l6n_A 267 ILGLNKIV-RMYSPTSILHHHHHH 289 (289)
T ss_dssp HHHHHHHH-HHSSSSCCCCCCCCC
T ss_pred HHHHHHHh-hhcCCccccccccCC
Confidence 45666665 678998877777665
No 26
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=26.54 E-value=89 Score=19.20 Aligned_cols=21 Identities=29% Similarity=-0.050 Sum_probs=15.8
Q ss_pred hhhcCchhHHHHHHHHHHHHH
Q 035119 25 RQATPGLGIALVAFGIYLVGE 45 (73)
Q Consensus 25 ~~~fPGlgig~~AF~vyv~~E 45 (73)
..|..|-|+|-+.|.+.+..-
T Consensus 24 ~qMlkGAg~AAv~f~~~~~~l 44 (77)
T 2dw3_A 24 FQMMKGAGWAGGVFFGTLLLI 44 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 458899999988887765443
No 27
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=25.97 E-value=48 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCcccc
Q 035119 39 GIYLVGEQVYNRVIAPSPSHSHHTHHQ 65 (73)
Q Consensus 39 ~vyv~~E~~~~~~~~p~~~~~hh~~~~ 65 (73)
...-++|.-..+ ++=++++||.||.
T Consensus 296 ~~l~~~e~~~~~--~~~~~~~~~~~~~ 320 (320)
T 3i83_A 296 ALMKLLELRTSK--SLWGNEGHHHHHH 320 (320)
T ss_dssp HHHHHHHHHHTC--CTTCC--------
T ss_pred HHHHHHHHHHhh--cccccCcccccCC
Confidence 334445555543 5557788887763
No 28
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=25.94 E-value=53 Score=20.50 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=6.9
Q ss_pred cCCCCCCCCCccc
Q 035119 52 IAPSPSHSHHTHH 64 (73)
Q Consensus 52 ~~p~~~~~hh~~~ 64 (73)
..|++...||.||
T Consensus 213 ~~~~~~~~~~~~~ 225 (225)
T 2yhc_A 213 NSSNTLEHHHHHH 225 (225)
T ss_dssp CCSCCCCCTTCCC
T ss_pred hCCCchhhcccCC
Confidence 4565555555544
No 29
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=25.48 E-value=3.9 Score=29.79 Aligned_cols=30 Identities=37% Similarity=0.636 Sum_probs=12.1
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 035119 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~fPGlgig~~AF~vyv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
--||||+-+ =|..+.+..-..+..+||.||
T Consensus 380 ~~PGlGv~~--------d~~~l~~~~~~~~~~~~~~~~ 409 (410)
T 2gl5_A 380 EQPGLGQEL--------NDEVVKEYLAYVIKEGHHHHH 409 (410)
T ss_dssp CSSBTSCCB--------CHHHHTTTEEEEEC-------
T ss_pred CCCcCCccc--------CHHHHHhcccccccccccccC
Confidence 358988643 244455543444555666555
No 30
>3bf2_A Putative lipoprotein; NESG, MR36A, structural genomics, PSI-2, protein structure initiative; 2.60A {Neisseria meningitidis FAM18}
Probab=25.31 E-value=34 Score=21.97 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=11.7
Q ss_pred HHHHHHHhhhcCCCCCCCCCccc
Q 035119 42 LVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 42 v~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
-+++++..++..-+.+-.||.||
T Consensus 129 d~A~qIvrrL~~~~~~~~~~~~~ 151 (152)
T 3bf2_A 129 DAAEQIVRRLTFLKAELEHHHHH 151 (152)
T ss_dssp HHHHHHHHHHHTTTTC-------
T ss_pred HHHHHHHHHHHhhhHhhhhhccC
Confidence 46788888886666666666555
No 31
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=24.16 E-value=16 Score=26.95 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=0.0
Q ss_pred CCCCCCcccccc
Q 035119 56 PSHSHHTHHQHS 67 (73)
Q Consensus 56 ~~~~hh~~~~~~ 67 (73)
.|+.||.||.||
T Consensus 393 ~~~~~~~~~~~~ 404 (405)
T 2vhh_A 393 DDKHHHHHHHHS 404 (405)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 344555555554
No 32
>3b5m_A Uncharacterized protein; structural genomics, unknown function, flavoprotein, PSI-2, structure initiative; 1.21A {Rhodopirellula baltica}
Probab=23.76 E-value=23 Score=24.00 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=0.0
Q ss_pred CCCCCCccc
Q 035119 56 PSHSHHTHH 64 (73)
Q Consensus 56 ~~~~hh~~~ 64 (73)
-..+||.||
T Consensus 196 ~~~~~~~~~ 204 (205)
T 3b5m_A 196 ISEGHHHHH 204 (205)
T ss_dssp ---------
T ss_pred hcccccccC
Confidence 345555554
No 33
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=23.35 E-value=41 Score=23.73 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=1.9
Q ss_pred HhhhcCCCCCCCCCccc
Q 035119 48 YNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 48 ~~~~~~p~~~~~hh~~~ 64 (73)
+..+....+..+||.||
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (268)
T 1vhk_A 251 TELLRGDQEGGSHHHHH 267 (268)
T ss_dssp HHTCC------------
T ss_pred hhhhccCccCCcccccC
Confidence 34343333434444443
No 34
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=22.78 E-value=14 Score=25.30 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=17.2
Q ss_pred hhhhcCchhHHHH-----HHHHHHHHHHHHh
Q 035119 24 LRQATPGLGIALV-----AFGIYLVGEQVYN 49 (73)
Q Consensus 24 ~~~~fPGlgig~~-----AF~vyv~~E~~~~ 49 (73)
++.+++|++..++ ..+.+++||++-.
T Consensus 254 ~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~ 284 (303)
T 2lck_A 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284 (303)
T ss_dssp THHHHSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHhhccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5678889887665 2344567887654
No 35
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=22.77 E-value=5.6 Score=28.95 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=11.0
Q ss_pred hcCchhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 035119 27 ATPGLGIALVAFGIYLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 27 ~fPGlgig~~AF~vyv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
--||||+-+ -|..+++..-.....+||.||
T Consensus 377 ~~PGlGv~~--------d~~~l~~~~~~~~~~~~~~~~ 406 (407)
T 2o56_A 377 ELPGIGQEL--------TEETMKKSPTITVKEGHHHHH 406 (407)
T ss_dssp CSSBTSCCB--------CHHHHHHSCEEEEC-------
T ss_pred CCCCCCcee--------CHHHHHhccCCcCCCccccCC
Confidence 358988543 233444433333445555554
No 36
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=22.71 E-value=24 Score=21.82 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=4.5
Q ss_pred HhhhcCCCCCCCCCcc
Q 035119 48 YNRVIAPSPSHSHHTH 63 (73)
Q Consensus 48 ~~~~~~p~~~~~hh~~ 63 (73)
+.++..|+++..||.|
T Consensus 217 ~~~~~~~~~~~~~~~~ 232 (233)
T 3nas_A 217 WEQYRIRESEGHHHHH 232 (233)
T ss_dssp HHHHHHTC--------
T ss_pred HHHHHhhhcccccccC
Confidence 4455566665444444
No 37
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=22.33 E-value=32 Score=25.15 Aligned_cols=20 Identities=40% Similarity=0.791 Sum_probs=3.8
Q ss_pred HHhhhcCCCCCCCCCccccc
Q 035119 47 VYNRVIAPSPSHSHHTHHQH 66 (73)
Q Consensus 47 ~~~~~~~p~~~~~hh~~~~~ 66 (73)
.+.+|..++-.|-||.||.|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~ 413 (413)
T 3ne5_B 394 ALERMRSESATHAHHHHHHH 413 (413)
T ss_dssp HHHTTCC-------------
T ss_pred hhhhhcccccccccccccCC
Confidence 35555566656666666654
No 38
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=22.07 E-value=62 Score=19.51 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=2.9
Q ss_pred CCCCCCCCCccc
Q 035119 53 APSPSHSHHTHH 64 (73)
Q Consensus 53 ~p~~~~~hh~~~ 64 (73)
.+.-..+||.||
T Consensus 150 ~~~~~~~~~~~~ 161 (162)
T 2pcs_A 150 KQEASEGHHHHH 161 (162)
T ss_dssp -------CEEEC
T ss_pred CccccccccccC
Confidence 334445666555
No 39
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=21.88 E-value=59 Score=19.11 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=9.5
Q ss_pred HHHHHhhhcCCCCCCCCCccc
Q 035119 44 GEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 44 ~E~~~~~~~~p~~~~~hh~~~ 64 (73)
+++.++++.....+..||.||
T Consensus 132 l~~~l~~l~~~~~~~~~~~~~ 152 (152)
T 2lrn_A 132 LYNTVEKFVNGAKEGHHHHHH 152 (152)
T ss_dssp HHHHHHHHHTSSSSCCSSSCC
T ss_pred HHHHHHHHHhhccccccccCC
Confidence 444455544444444444443
No 40
>2zi0_A Protein 2B, TAV2B; RNAI suppression, nucleus, suppressor of RNA silencing; 2.82A {Tomato aspermy virus} PDB: 3cz3_A
Probab=21.24 E-value=71 Score=19.55 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhcCCCCCCCCCccc
Q 035119 41 YLVGEQVYNRVIAPSPSHSHHTHH 64 (73)
Q Consensus 41 yv~~E~~~~~~~~p~~~~~hh~~~ 64 (73)
+|-+|-+... +.-.+|.|||.||
T Consensus 52 ~~~~~~~~~~-~~~~~~~~~~~~~ 74 (75)
T 2zi0_A 52 ARQVELSAIN-SDNSSDEGHHHHH 74 (75)
T ss_dssp HHHHHHHHHH-SCC----------
T ss_pred HHhheeeeec-CCCCccccccccC
Confidence 4555544332 4555778888776
No 41
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Probab=20.07 E-value=33 Score=24.78 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=10.2
Q ss_pred HHHHHHHHHH-HHHHHh
Q 035119 34 ALVAFGIYLV-GEQVYN 49 (73)
Q Consensus 34 g~~AF~vyv~-~E~~~~ 49 (73)
.-+||+.-|+ .||+.+
T Consensus 424 ~~~~~~~~~~~~~~~~~ 440 (456)
T 3vdx_A 424 TEVAFGLVCATCEQIAD 440 (456)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred ecchhhhhHHHHHHHhh
Confidence 4578887776 466665
Done!