Query 035119
Match_columns 73
No_of_seqs 102 out of 135
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 15:23:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uqra_ c.23.13.1 (A:) Type II 28.1 18 0.0013 22.5 2.5 29 6-35 103-131 (146)
2 d1vh4a_ b.80.6.1 (A:) Stabiliz 26.7 8.5 0.00062 26.2 0.7 15 5-19 32-46 (413)
3 d1h05a_ c.23.13.1 (A:) Type II 25.0 7.6 0.00055 24.4 0.1 39 6-49 102-140 (144)
4 d2c4va1 c.23.13.1 (A:1-158) Ty 25.0 23 0.0017 22.4 2.6 28 6-34 105-132 (158)
5 d2di0a1 a.5.2.4 (A:8-70) Activ 21.3 23 0.0017 19.5 1.8 19 22-40 11-29 (63)
6 d2r7ka1 c.30.1.8 (A:1-123) 5-f 17.7 30 0.0022 21.3 1.8 16 36-51 93-108 (123)
7 d1gtza_ c.23.13.1 (A:) Type II 17.4 13 0.00092 23.6 -0.1 28 6-34 108-135 (149)
8 d1vl6a1 c.2.1.7 (A:155-376) Ma 16.2 15 0.0011 24.3 0.1 12 27-38 163-174 (222)
9 d2r85a1 c.30.1.8 (A:1-99) 5-fo 15.6 24 0.0018 21.0 1.0 14 36-49 70-83 (99)
10 d1vf5c3 f.23.23.1 (C:250-286) 14.8 70 0.0051 15.9 2.6 16 33-48 7-22 (37)
No 1
>d1uqra_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Actinobacillus pleuropneumoniae [TaxId: 715]}
Probab=28.08 E-value=18 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=22.4
Q ss_pred CCCcchhhhhcCCCccchhhhhcCchhHHH
Q 035119 6 EFFRRRDGWRKHPLLTSNLRQATPGLGIAL 35 (73)
Q Consensus 6 DPW~R~EaWRy~p~f~~~~~~~fPGlgig~ 35 (73)
+|++| |.||.+..++..-...+-|||+--
T Consensus 103 Ni~~R-E~fR~~S~i~~~~~g~i~G~G~~~ 131 (146)
T d1uqra_ 103 NVHAR-EPFRHHSYLSDVAKGVICGLGAKG 131 (146)
T ss_dssp CGGGS-CGGGSCCSSGGGSSEEEESSTTHH
T ss_pred Ccccc-ccccccccccccceEEEecCCHHH
Confidence 56666 899999998877677778888743
No 2
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=26.71 E-value=8.5 Score=26.19 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=12.1
Q ss_pred cCCCcchhhhhcCCC
Q 035119 5 GEFFRRRDGWRKHPL 19 (73)
Q Consensus 5 ~DPW~R~EaWRy~p~ 19 (73)
+=|=.|.|.|||.+.
T Consensus 32 GlPt~k~E~WKyT~l 46 (413)
T d1vh4a_ 32 GLPTRKHENWKYTPL 46 (413)
T ss_dssp CCCCTTSTTCTTCCC
T ss_pred CCCCCCCcCccCCCH
Confidence 456778999999984
No 3
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.01 E-value=7.6 Score=24.37 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCcchhhhhcCCCccchhhhhcCchhHHHHHHHHHHHHHHHHh
Q 035119 6 EFFRRRDGWRKHPLLTSNLRQATPGLGIALVAFGIYLVGEQVYN 49 (73)
Q Consensus 6 DPW~R~EaWRy~p~f~~~~~~~fPGlgig~~AF~vyv~~E~~~~ 49 (73)
++++| |.+|.+..++.--...+-|||+ .+=.+|++.+.+
T Consensus 102 Ni~~R-E~fR~~S~is~~~~g~I~G~G~----~gY~lAl~~l~~ 140 (144)
T d1h05a_ 102 NVHAR-EEFRRHSYLSPIATGVIVGLGI----QGYLLALRYLAE 140 (144)
T ss_dssp CGGGS-CGGGGCCSSGGGSSEEEESSTT----HHHHHHHHHHHH
T ss_pred Ccccc-ccccccccccccceEEEecCCh----HHHHHHHHHHHH
Confidence 45555 7899999888655566677765 333445555544
No 4
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]}
Probab=24.99 E-value=23 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.5
Q ss_pred CCCcchhhhhcCCCccchhhhhcCchhHH
Q 035119 6 EFFRRRDGWRKHPLLTSNLRQATPGLGIA 34 (73)
Q Consensus 6 DPW~R~EaWRy~p~f~~~~~~~fPGlgig 34 (73)
++++| |.||.+..++..-....-|||+-
T Consensus 105 Ni~~R-E~fR~~S~is~~~~g~I~G~G~~ 132 (158)
T d2c4va1 105 NIQAR-EEFRKNSYTGAACGGVIMGFGPL 132 (158)
T ss_dssp CTTSS-CGGGSCCTTTTTSSEEEESSTTH
T ss_pred Ccccc-ccccccccccccceEEEecCChH
Confidence 56777 88999998876555566666653
No 5
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.26 E-value=23 Score=19.54 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.2
Q ss_pred chhhhhcCchhHHHHHHHH
Q 035119 22 SNLRQATPGLGIALVAFGI 40 (73)
Q Consensus 22 ~~~~~~fPGlgig~~AF~v 40 (73)
.+.+.+||=||.||+....
T Consensus 11 ~qV~Dl~PdLG~GFi~~~L 29 (63)
T d2di0a1 11 SQVKDLLPDLGEGFILACL 29 (63)
T ss_dssp HHHHHHCCSSCHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHH
Confidence 3678899999999988765
No 6
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=17.74 E-value=30 Score=21.35 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhh
Q 035119 36 VAFGIYLVGEQVYNRV 51 (73)
Q Consensus 36 ~AF~vyv~~E~~~~~~ 51 (73)
..|++||++|.+-+.+
T Consensus 93 gSfv~Y~G~~~ie~~~ 108 (123)
T d2r7ka1 93 GSFIAYCGLDNVENSF 108 (123)
T ss_dssp HHHHHHHCHHHHHHTC
T ss_pred CCeeeeecHHHHHhcC
Confidence 6899999999987644
No 7
>d1gtza_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.39 E-value=13 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=20.0
Q ss_pred CCCcchhhhhcCCCccchhhhhcCchhHH
Q 035119 6 EFFRRRDGWRKHPLLTSNLRQATPGLGIA 34 (73)
Q Consensus 6 DPW~R~EaWRy~p~f~~~~~~~fPGlgig 34 (73)
++++ ||.||.+..++..-....-|||+-
T Consensus 108 Ni~~-RE~fR~~S~is~~~~g~I~G~G~~ 135 (149)
T d1gtza_ 108 NIHQ-REPFRHHSYVSQRADGVVAGCGVQ 135 (149)
T ss_dssp CGGG-SCGGGSCCSGGGTCSEEEESSTTH
T ss_pred Cccc-cccccccccccccceEEEecCChH
Confidence 3444 589999999887666666777753
No 8
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=16.23 E-value=15 Score=24.28 Aligned_cols=12 Identities=33% Similarity=0.307 Sum_probs=9.9
Q ss_pred hcCchhHHHHHH
Q 035119 27 ATPGLGIALVAF 38 (73)
Q Consensus 27 ~fPGlgig~~AF 38 (73)
.|||+|.|.++-
T Consensus 163 iFPGiglGal~~ 174 (222)
T d1vl6a1 163 AFPGIMKGAVEK 174 (222)
T ss_dssp THHHHHHHHHHH
T ss_pred ecchHHHHHHHh
Confidence 799999997653
No 9
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=15.62 E-value=24 Score=21.02 Aligned_cols=14 Identities=36% Similarity=0.031 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHh
Q 035119 36 VAFGIYLVGEQVYN 49 (73)
Q Consensus 36 ~AF~vyv~~E~~~~ 49 (73)
..|++||++|.+-+
T Consensus 70 gSfv~Y~G~d~ie~ 83 (99)
T d2r85a1 70 GSFVAHLGIELVEN 83 (99)
T ss_dssp TTHHHHHCHHHHHT
T ss_pred CCEEEEEcHHHHhc
Confidence 57999999998853
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.81 E-value=70 Score=15.89 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 035119 33 IALVAFGIYLVGEQVY 48 (73)
Q Consensus 33 ig~~AF~vyv~~E~~~ 48 (73)
.|+.+|.+.+.+-|++
T Consensus 7 ~gl~~F~~~v~laQi~ 22 (37)
T d1vf5c3 7 KWMIAFICLVMLAQLM 22 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888888865
Done!