BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035122
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|Y Chain Y, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 66
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 43/45 (95%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFV 45
MGKVHGSLARAGKV+ QTPKV+KQ+KKK+PRGRA+KR++Y +R++
Sbjct: 1 MGKVHGSLARAGKVKNQTPKVSKQEKKKQPRGRAFKRLKYTQRYL 45
>pdb|3IZ6|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 62
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 47/47 (100%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KRMQYNRRFVTA
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTA 47
>pdb|2XZM|X Chain X, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|X Chain X, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 80
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDK-KKRPRGRAYKRMQYNRRFV 45
MG++HG+LA+AGKVR QTPKV K+DK +K P+GR+YKR+ YNRR+
Sbjct: 1 MGRMHGTLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYA 46
>pdb|3IZB|Z Chain Z, Localization Of The Small Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3U5C|EE Chain e, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|EE Chain e, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
pdb|3J16|E Chain E, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 63
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
M KVHGSLARAGKV+ QTPKV K +K K+P+GRAYKR+ Y RRFV
Sbjct: 1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVN 46
>pdb|3J0L|X Chain X, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1
pdb|3J0O|X Chain X, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 9a Cryo-Em Map: Classic Pre State 2
pdb|3J0P|X Chain X, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 10.6a Cryo-Em Map: Rotated Pre State 1
pdb|3J0Q|X Chain X, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 10.6a Cryo-Em Map: Rotated Pre State 2
Length = 68
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
Query: 7 SLARAGKVRGQTPKVAKQDK-KKRPRGRAYKRMQYNRRFV 45
+LA+AGKVR QTPKV K+DK +K P+GR+YKR+ YNRR+
Sbjct: 1 TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYA 40
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 26/60 (43%)
Query: 4 VHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLIISHRFSGLLNIR 63
+ GS +V+ K KQD + P G ++ + ++ G + SH L +++
Sbjct: 193 IEGSEDSNCRVKISIDKFWKQDSRNLPTGESFAPTGEQKEYLENGVAVASHPIESLFSLK 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,890,869
Number of Sequences: 62578
Number of extensions: 53315
Number of successful extensions: 139
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)