BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035122
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42952|RS30_SCHPO 40S ribosomal protein S30 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps30a PE=3 SV=2
Length = 61
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 42/51 (82%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAGQLI 51
MGKVHGSLARAGKV+ QTPKV KQ+K K+P+GRAYKR+ Y RRFV ++
Sbjct: 1 MGKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMV 51
>sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1
SV=3
Length = 62
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 47/47 (100%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
MGKVHGSLARAGKVRGQTPKVAKQDKKK+PRGRA+KR+Q+NRRFVTA
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTA 47
>sp|O96269|RS30_PLAF7 40S ribosomal protein S30 OS=Plasmodium falciparum (isolate 3D7)
GN=RPS30 PE=3 SV=1
Length = 58
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 37/48 (77%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTAG 48
MGKVHGSLARAGKV+ QTPKV K DKKKR GRA KR YNRRF G
Sbjct: 1 MGKVHGSLARAGKVKNQTPKVPKLDKKKRLTGRAKKRQLYNRRFSDNG 48
>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2
Length = 59
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTP V K ++K+ GRA +R+QYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVN 44
>sp|P0CX34|RS30B_YEAST 40S ribosomal protein S30-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS30B PE=1 SV=1
Length = 63
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
M KVHGSLARAGKV+ QTPKV K +K K+P+GRAYKR+ Y RRFV
Sbjct: 1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVN 46
>sp|P0CX33|RS30A_YEAST 40S ribosomal protein S30-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS30A PE=1 SV=1
Length = 63
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
M KVHGSLARAGKV+ QTPKV K +K K+P+GRAYKR+ Y RRFV
Sbjct: 1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVN 46
>sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=2 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P62862|RS30_MOUSE 40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P62861|RS30_HUMAN 40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P62860|RS30_CRIGR 40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|P62866|RS30_BOVIN 40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1
Length = 59
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 3 KVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVT 46
KVHGSLARAGKVRGQTPKVAKQ+KKK+ GRA +RMQYNRRFV
Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVN 44
>sp|Q556Y1|RS30_DICDI 40S ribosomal protein S30 OS=Dictyostelium discoideum GN=rps30-1
PE=3 SV=1
Length = 66
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRFVTA 47
MGKVHG L RAGKVR TPK K++K+K GRA KRM +NRR V A
Sbjct: 1 MGKVHGGLNRAGKVRNATPKKDKEEKRKPKVGRAKKRMIFNRRNVAA 47
>sp|Q9Y9T9|RS30_AERPE 30S ribosomal protein S30 OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps30e
PE=3 SV=1
Length = 50
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKRPRGRAYKRMQYNRRF 44
MG HGSL +AGKVR QTP++ + KK P R R++Y R
Sbjct: 1 MG-THGSLTKAGKVRKQTPRLPAKQKKNYP-PRLKNRLKYQVRI 42
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,544,540
Number of Sequences: 539616
Number of extensions: 743390
Number of successful extensions: 2228
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2211
Number of HSP's gapped (non-prelim): 19
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)