Query 035122
Match_columns 72
No_of_seqs 100 out of 141
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 15:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035122.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035122hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wioa4 b.1.1.3 (A:292-363) CD 16.2 22 0.0016 20.7 0.9 15 12-26 26-40 (72)
2 d2i9fa1 d.254.1.1 (A:50-105) A 13.4 23 0.0017 19.6 0.4 9 5-13 29-38 (56)
3 d1cida2 b.1.1.3 (A:106-177) CD 12.6 23 0.0016 20.7 0.2 15 12-26 28-42 (72)
4 d2vqei1 d.14.1.1 (I:2-128) Rib 12.5 28 0.002 21.2 0.6 21 23-43 107-127 (127)
5 d2iafa1 d.81.2.1 (A:4-148) L-s 10.4 27 0.002 21.6 -0.0 10 4-13 34-43 (145)
6 d2gy9i1 d.14.1.1 (I:4-129) Rib 7.8 59 0.0043 19.5 0.8 21 23-43 106-126 (126)
7 d1ocya_ d.231.1.1 (A:) Recepto 6.8 67 0.0049 18.6 0.7 8 61-68 187-194 (198)
8 d2c35b2 d.230.1.1 (B:1-77) N-t 5.9 2E+02 0.015 14.8 2.5 15 56-70 62-77 (77)
9 d1m0da_ c.52.1.17 (A:) Endonuc 5.1 1.1E+02 0.0082 18.8 1.1 8 59-66 71-78 (129)
10 d2hq9a1 b.45.1.1 (A:1-148) Hyp 5.0 1.4E+02 0.01 16.6 1.4 8 61-68 61-68 (148)
No 1
>d1wioa4 b.1.1.3 (A:292-363) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.20 E-value=22 Score=20.72 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=12.3
Q ss_pred CcccCCCCCcccccc
Q 035122 12 GKVRGQTPKVAKQDK 26 (72)
Q Consensus 12 GKVR~QTPKV~KqeK 26 (72)
=|..+|+-||.+|+|
T Consensus 26 lklenQ~akVS~qqK 40 (72)
T d1wioa4 26 LKLENKEAKVSKREK 40 (72)
T ss_dssp EECSSSSCSEEESSS
T ss_pred EEecCccceecCcee
Confidence 366789999999876
No 2
>d2i9fa1 d.254.1.1 (A:50-105) Arterivirus nucleocapsid protein {Equine arteritis virus [TaxId: 11047]}
Probab=13.44 E-value=23 Score=19.55 Aligned_cols=9 Identities=67% Similarity=0.999 Sum_probs=6.7
Q ss_pred ecccc-cCCc
Q 035122 5 HGSLA-RAGK 13 (72)
Q Consensus 5 HGSLa-rAGK 13 (72)
||||+ -||-
T Consensus 29 hgsltadagg 38 (56)
T d2i9fa1 29 HGSLTADAGG 38 (56)
T ss_dssp CSEEEECSSS
T ss_pred ccceeecCCC
Confidence 89998 5664
No 3
>d1cida2 b.1.1.3 (A:106-177) CD4 C2-set domains {Rat (Rattus rattus) [TaxId: 10117]}
Probab=12.57 E-value=23 Score=20.67 Aligned_cols=15 Identities=33% Similarity=0.435 Sum_probs=12.2
Q ss_pred CcccCCCCCcccccc
Q 035122 12 GKVRGQTPKVAKQDK 26 (72)
Q Consensus 12 GKVR~QTPKV~KqeK 26 (72)
=|..+|+-||.+|+|
T Consensus 28 LklenQ~~kVS~qqK 42 (72)
T d1cida2 28 LKQENQEARVSRQEK 42 (72)
T ss_dssp EEETTSCEEEEESSS
T ss_pred EEecCccceecCcee
Confidence 366789999998876
No 4
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=12.46 E-value=28 Score=21.16 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=13.4
Q ss_pred cccccCCCChhhhhhhhhchh
Q 035122 23 KQDKKKRPRGRAYKRMQYNRR 43 (72)
Q Consensus 23 KqeKkk~~~GRak~R~qYnrR 43 (72)
..|.||.-...||++-||.+|
T Consensus 107 ~~ErKK~G~~kARk~~Q~skR 127 (127)
T d2vqei1 107 VVERKKYGKHKARRAPQYSKR 127 (127)
T ss_dssp CCCCCCSSSSBTTBCCCCCCC
T ss_pred cccccCCCcccccccccccCC
Confidence 345555444567778888765
No 5
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=10.37 E-value=27 Score=21.57 Aligned_cols=10 Identities=60% Similarity=0.767 Sum_probs=8.4
Q ss_pred eecccccCCc
Q 035122 4 VHGSLARAGK 13 (72)
Q Consensus 4 vHGSLarAGK 13 (72)
.|||||..||
T Consensus 34 LyGSLa~TG~ 43 (145)
T d2iafa1 34 LYGSLALTGK 43 (145)
T ss_dssp EEHHHHHTCT
T ss_pred EehhhhhcCC
Confidence 4899998888
No 6
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}
Probab=7.78 E-value=59 Score=19.53 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=13.2
Q ss_pred cccccCCCChhhhhhhhhchh
Q 035122 23 KQDKKKRPRGRAYKRMQYNRR 43 (72)
Q Consensus 23 KqeKkk~~~GRak~R~qYnrR 43 (72)
..|.||.--..||++-||.+|
T Consensus 106 ~~ErKK~G~~kARk~~Q~skR 126 (126)
T d2gy9i1 106 QVERKKVGLRKARRRPQFSKR 126 (126)
T ss_dssp CCCCCCSSSSSSSSCCCCSCC
T ss_pred ccccCCCCCcccccCccccCC
Confidence 345555444557778888765
No 7
>d1ocya_ d.231.1.1 (A:) Receptor-binding domain of short tail fibre protein gp12 {Bacteriophage T4 [TaxId: 10665]}
Probab=6.80 E-value=67 Score=18.62 Aligned_cols=8 Identities=38% Similarity=0.650 Sum_probs=5.7
Q ss_pred eeeEEEEE
Q 035122 61 NIRVCFCI 68 (72)
Q Consensus 61 ~~~~~~~~ 68 (72)
|+-+||||
T Consensus 187 ~~~l~yiI 194 (198)
T d1ocya_ 187 NISLNYII 194 (198)
T ss_dssp CCCCEEEE
T ss_pred hheeEeEE
Confidence 56677777
No 8
>d2c35b2 d.230.1.1 (B:1-77) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=2e+02 Score=14.82 Aligned_cols=15 Identities=33% Similarity=0.467 Sum_probs=8.8
Q ss_pred cccceeeeEEE-EEEe
Q 035122 56 FSGLLNIRVCF-CIVF 70 (72)
Q Consensus 56 ~~~~~~~~~~~-~~~~ 70 (72)
+.|..-.+|.| |+||
T Consensus 62 gdG~~~~~V~F~~lvF 77 (77)
T d2c35b2 62 GRGFVLYPVKYKAIVF 77 (77)
T ss_dssp TCSSEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEC
Confidence 45666667776 4443
No 9
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=5.14 E-value=1.1e+02 Score=18.81 Aligned_cols=8 Identities=50% Similarity=0.924 Sum_probs=6.1
Q ss_pred ceeeeEEE
Q 035122 59 LLNIRVCF 66 (72)
Q Consensus 59 ~~~~~~~~ 66 (72)
-|+||.||
T Consensus 71 ~lDIRfvF 78 (129)
T d1m0da_ 71 ELDIRIVF 78 (129)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 46888887
No 10
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]}
Probab=5.00 E-value=1.4e+02 Score=16.57 Aligned_cols=8 Identities=38% Similarity=0.426 Sum_probs=0.0
Q ss_pred eeeEEEEE
Q 035122 61 NIRVCFCI 68 (72)
Q Consensus 61 ~~~~~~~~ 68 (72)
|-+|||++
T Consensus 61 np~Vs~~v 68 (148)
T d2hq9a1 61 NPRVSVQV 68 (148)
T ss_dssp CCEEEEEE
T ss_pred CCeEEEEE
Done!