BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035130
(72 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297604251|ref|NP_001055168.2| Os05g0314100 [Oryza sativa Japonica Group]
gi|54291778|gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa Japonica
Group]
gi|215768148|dbj|BAH00377.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768714|dbj|BAH00943.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196532|gb|EEC78959.1| hypothetical protein OsI_19425 [Oryza sativa Indica Group]
gi|222631079|gb|EEE63211.1| hypothetical protein OsJ_18021 [Oryza sativa Japonica Group]
gi|255676234|dbj|BAF17082.2| Os05g0314100 [Oryza sativa Japonica Group]
Length = 105
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 24 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 83
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 84 DRFISKMFLRGDSVIIVLRNPK 105
>gi|212722184|ref|NP_001131740.1| uncharacterized protein LOC100193106 [Zea mays]
gi|194692396|gb|ACF80282.1| unknown [Zea mays]
gi|195629728|gb|ACG36505.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|413918934|gb|AFW58866.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413918935|gb|AFW58867.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
Length = 105
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 24 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNK 83
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 84 DRFISKMFLRGDSVIIVLRNPK 105
>gi|226506222|ref|NP_001147167.1| LOC100280773 [Zea mays]
gi|195607934|gb|ACG25797.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|195622778|gb|ACG33219.1| small nuclear ribonucleoprotein Sm D2 [Zea mays]
gi|238013460|gb|ACR37765.1| unknown [Zea mays]
gi|413942324|gb|AFW74973.1| Small nuclear ribonucleoprotein Sm D2 isoform 1 [Zea mays]
gi|413942325|gb|AFW74974.1| Small nuclear ribonucleoprotein Sm D2 isoform 2 [Zea mays]
gi|413942326|gb|AFW74975.1| Small nuclear ribonucleoprotein Sm D2 isoform 3 [Zea mays]
Length = 104
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 23 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 82
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 83 DRFISKMFLRGDSVIIVLRNPK 104
>gi|413918936|gb|AFW58868.1| hypothetical protein ZEAMMB73_850141 [Zea mays]
Length = 104
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 23 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNK 82
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 83 DRFISKMFLRGDSVIIVLRNPK 104
>gi|414586344|tpg|DAA36915.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 102
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 21 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 80
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 81 DRFISKMFLRGDSVIIVLRNPK 102
>gi|212720721|ref|NP_001132149.1| uncharacterized protein LOC100193568 [Zea mays]
gi|194693576|gb|ACF80872.1| unknown [Zea mays]
gi|414586342|tpg|DAA36913.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
gi|414586343|tpg|DAA36914.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 105
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 24 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 83
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 84 DRFISKMFLRGDSVIIVLRNPK 105
>gi|192910682|gb|ACF06449.1| small nuclear ribonucleoprotein-like protein [Elaeis guineensis]
Length = 105
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 24 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 83
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 84 DRFISKMFLRGDSVIIVLRNPK 105
>gi|255573198|ref|XP_002527528.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223533078|gb|EEF34837.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 103
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA+PVNK
Sbjct: 22 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAMPVNK 81
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 82 DRFISKMFLRGDSVIIVLRNPK 103
>gi|297821194|ref|XP_002878480.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297324318|gb|EFH54739.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 109
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+
Sbjct: 28 MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 88 DRFISKMFLRGDSVIIVLRNPK 109
>gi|326493364|dbj|BAJ85143.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 107
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
M+SVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 26 MLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 85
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 86 DRFISKMFLRGDSVIIVLRNPK 107
>gi|297824871|ref|XP_002880318.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
gi|21554692|gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|21592784|gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|297326157|gb|EFH56577.1| hypothetical protein ARALYDRAFT_483945 [Arabidopsis lyrata subsp.
lyrata]
Length = 105
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+
Sbjct: 24 MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 83
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 84 DRFISKMFLRGDSVIIVLRNPK 105
>gi|18407411|ref|NP_566107.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145331435|ref|NP_001078076.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145339793|ref|NP_567134.3| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20196966|gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|20197310|gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255773|gb|AEC10867.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255776|gb|AEC10870.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646879|gb|AEE80400.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 109
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+
Sbjct: 28 MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 88 DRFISKMFLRGDSVIIVLRNPK 109
>gi|242086617|ref|XP_002439141.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
gi|190688742|gb|ACE86405.1| putative small nuclear ribonucleoprotein D2 [Sorghum bicolor]
gi|241944426|gb|EES17571.1| hypothetical protein SORBIDRAFT_09g001270 [Sorghum bicolor]
Length = 104
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 71/81 (87%), Gaps = 10/81 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 23 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 82
Query: 51 DRFISKMFLRGDSVIIVLRNP 71
DRFISKMFLRGDSVIIVLRNP
Sbjct: 83 DRFISKMFLRGDSVIIVLRNP 103
>gi|242076520|ref|XP_002448196.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
gi|241939379|gb|EES12524.1| hypothetical protein SORBIDRAFT_06g022770 [Sorghum bicolor]
Length = 105
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 71/81 (87%), Gaps = 10/81 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNK
Sbjct: 24 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNK 83
Query: 51 DRFISKMFLRGDSVIIVLRNP 71
DRFISKMFLRGDSVIIVLRNP
Sbjct: 84 DRFISKMFLRGDSVIIVLRNP 104
>gi|30690747|ref|NP_850477.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|42571273|ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|145332931|ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|7362764|emb|CAB83134.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|28466881|gb|AAO44049.1| At2g47640 [Arabidopsis thaliana]
gi|110743879|dbj|BAE99774.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255774|gb|AEC10868.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|330255775|gb|AEC10869.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
gi|332646880|gb|AEE80401.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
Length = 108
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 72/82 (87%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVN+
Sbjct: 27 MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|297743892|emb|CBI36862.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 89 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNK 148
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 149 DRFISKMFLRGDSVIIVLRNPK 170
>gi|224068340|ref|XP_002302713.1| predicted protein [Populus trichocarpa]
gi|224128478|ref|XP_002320342.1| predicted protein [Populus trichocarpa]
gi|118481477|gb|ABK92681.1| unknown [Populus trichocarpa]
gi|222844439|gb|EEE81986.1| predicted protein [Populus trichocarpa]
gi|222861115|gb|EEE98657.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|359806642|ref|NP_001241022.1| uncharacterized protein LOC100793233 [Glycine max]
gi|255633912|gb|ACU17317.1| unknown [Glycine max]
Length = 108
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|449457536|ref|XP_004146504.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
gi|449499984|ref|XP_004160970.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Cucumis sativus]
Length = 107
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 26 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 85
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 86 DRFISKMFLRGDSVIIVLRNPK 107
>gi|357521399|ref|XP_003630988.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525010|gb|AET05464.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 104
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 23 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 82
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 83 DRFISKMFLRGDSVIIVLRNPK 104
>gi|357521397|ref|XP_003630987.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355525009|gb|AET05463.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|388506390|gb|AFK41261.1| unknown [Medicago truncatula]
Length = 108
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|356513032|ref|XP_003525218.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Glycine max]
Length = 108
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|225437378|ref|XP_002268945.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 104
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 23 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNK 82
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 83 DRFISKMFLRGDSVIIVLRNPK 104
>gi|297737605|emb|CBI26806.3| unnamed protein product [Vitis vinifera]
Length = 103
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 22 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNK 81
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 82 DRFISKMFLRGDSVIIVLRNPK 103
>gi|225424416|ref|XP_002285043.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Vitis vinifera]
Length = 107
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 26 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNK 85
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 86 DRFISKMFLRGDSVIIVLRNPK 107
>gi|357126948|ref|XP_003565149.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Brachypodium distachyon]
gi|357126950|ref|XP_003565150.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 2 [Brachypodium distachyon]
Length = 105
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
M+SVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNK
Sbjct: 24 MLSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAHPVNK 83
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 84 DRFISKMFLRGDSVIIVLRNPK 105
>gi|116780023|gb|ABK21523.1| unknown [Picea sitchensis]
Length = 108
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKAQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|351727138|ref|NP_001238430.1| uncharacterized protein LOC100500203 [Glycine max]
gi|255629692|gb|ACU15195.1| unknown [Glycine max]
Length = 117
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 71/82 (86%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKK+ PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKSQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|218189807|gb|EEC72234.1| hypothetical protein OsI_05349 [Oryza sativa Indica Group]
Length = 96
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/72 (88%), Positives = 70/72 (97%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRVRAFDRHCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 25 LINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 84
Query: 61 GDSVIIVLRNPK 72
GDSVIIVLRNPK
Sbjct: 85 GDSVIIVLRNPK 96
>gi|222619939|gb|EEE56071.1| hypothetical protein OsJ_04893 [Oryza sativa Japonica Group]
Length = 104
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 69/72 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 33 LINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 92
Query: 61 GDSVIIVLRNPK 72
GDSVIIVL+NPK
Sbjct: 93 GDSVIIVLKNPK 104
>gi|57900175|dbj|BAD88260.1| putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
Length = 431
Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/72 (86%), Positives = 69/72 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 360 LINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 419
Query: 61 GDSVIIVLRNPK 72
GDSVIIVL+NPK
Sbjct: 420 GDSVIIVLKNPK 431
>gi|217075318|gb|ACJ86019.1| unknown [Medicago truncatula]
Length = 108
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/82 (82%), Positives = 69/82 (84%), Gaps = 10/82 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
MMSVKNNTQ LLGRV AFDRHCNMVLENVREMW E+PKTGKGKKKA PVNK
Sbjct: 27 MMSVKNNTQVLINCRNNKKLLGRVGAFDRHCNMVLENVREMWAEVPKTGKGKKKAQPVNK 86
Query: 51 DRFISKMFLRGDSVIIVLRNPK 72
DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87 DRFISKMFLRGDSVIIVLRNPK 108
>gi|388501344|gb|AFK38738.1| unknown [Medicago truncatula]
Length = 97
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 69/81 (85%), Gaps = 10/81 (12%)
Query: 2 MSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 51
MSV+NNTQ LLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKD
Sbjct: 17 MSVRNNTQVLINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKD 76
Query: 52 RFISKMFLRGDSVIIVLRNPK 72
RFISKMFLRGDSVIIVLRNPK
Sbjct: 77 RFISKMFLRGDSVIIVLRNPK 97
>gi|357495275|ref|XP_003617926.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
gi|355519261|gb|AET00885.1| Small nuclear ribonucleoprotein-like protein [Medicago truncatula]
Length = 159
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 68/72 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLR
Sbjct: 88 LINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLR 147
Query: 61 GDSVIIVLRNPK 72
GDSVIIVLRNPK
Sbjct: 148 GDSVIIVLRNPK 159
>gi|357495277|ref|XP_003617927.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
gi|355519262|gb|AET00886.1| Small nuclear ribonucleoprotein-like protein [Medicago
truncatula]
Length = 81
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/72 (86%), Positives = 68/72 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLR
Sbjct: 10 LINCRNNKKLLGRVMAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLR 69
Query: 61 GDSVIIVLRNPK 72
GDSVIIVLRNPK
Sbjct: 70 GDSVIIVLRNPK 81
>gi|380027112|ref|XP_003697276.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis florea]
Length = 133
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMFLR
Sbjct: 56 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLR 115
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 116 GDSVILVLRNP 126
>gi|66500455|ref|XP_397475.2| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
isoform 1 [Apis mellifera]
gi|340709815|ref|XP_003393496.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus terrestris]
gi|350410361|ref|XP_003489020.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Bombus impatiens]
gi|383861912|ref|XP_003706428.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Megachile rotundata]
Length = 120
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVILVLRNP 113
>gi|328792204|ref|XP_003251694.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Apis mellifera]
Length = 122
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMFLR
Sbjct: 45 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLR 104
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 105 GDSVILVLRNP 115
>gi|156544546|ref|XP_001607849.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Nasonia vitripennis]
Length = 120
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+V+RNP
Sbjct: 103 GDSVILVVRNP 113
>gi|307177333|gb|EFN66506.1| Probable small nuclear ribonucleoprotein Sm D2 [Camponotus
floridanus]
Length = 137
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFI KMFLR
Sbjct: 60 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFIPKMFLR 119
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 120 GDSVILVLRNP 130
>gi|307194529|gb|EFN76821.1| Probable small nuclear ribonucleoprotein Sm D2 [Harpegnathos
saltator]
gi|322786953|gb|EFZ13177.1| hypothetical protein SINV_00701 [Solenopsis invicta]
Length = 110
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKKA PVNKDRFI KMFLR
Sbjct: 33 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFIPKMFLR 92
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 93 GDSVILVLRNP 103
>gi|321460184|gb|EFX71229.1| hypothetical protein DAPPUDRAFT_309154 [Daphnia pulex]
Length = 122
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK+ PVNKDRFISKMFLR
Sbjct: 44 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKSKPVNKDRFISKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|145343983|ref|XP_001416522.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576747|gb|ABO94815.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 103
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 66/72 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+E+WTE+PKTGKG KA PVNKDRFISKMFLR
Sbjct: 32 LINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGAAKAKPVNKDRFISKMFLR 91
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 92 GDSVILVLRNPK 103
>gi|384247738|gb|EIE21224.1| small nuclear ribonucleo protein Sm D2 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 67/72 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNM+LENV+EMWTE+PKTGKGKK + PVNKDRFI K+F+R
Sbjct: 39 LINCRNNRKLLGRVKAFDRHCNMILENVKEMWTEIPKTGKGKKGSTPVNKDRFIPKLFIR 98
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 99 GDSVILVLRNPK 110
>gi|159480556|ref|XP_001698348.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
gi|158282088|gb|EDP07841.1| small nuclear ribonucleoprotein Sm D2 [Chlamydomonas reinhardtii]
Length = 110
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 67/72 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNM+LENV+EMWTE+PKTGKG+K + PVNKDRF+SKMFLR
Sbjct: 39 LINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGQKASRPVNKDRFVSKMFLR 98
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 99 GDSVIMVLRNPK 110
>gi|115629150|ref|XP_001178435.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
gi|115918091|ref|XP_001177365.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Strongylocentrotus purpuratus]
Length = 118
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE PK GKGKK++ PVNKDR+I+KMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPKAGKGKKRSKPVNKDRYITKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVILVLRNP 113
>gi|308801164|ref|XP_003075361.1| small nuclear ribonucleoprotein D2-like protein (ISS) [Ostreococcus
tauri]
gi|116061917|emb|CAL52635.1| small nuclear ribonucleoprotein D2-like protein (ISS), partial
[Ostreococcus tauri]
Length = 103
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 66/72 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+E+WTE+PKTGKG KA PVNKDRF+SKMFLR
Sbjct: 32 LINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKAKPVNKDRFVSKMFLR 91
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 92 GDSVILVLRNPK 103
>gi|255564180|ref|XP_002523087.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
gi|223537649|gb|EEF39272.1| small nuclear ribonucleoprotein sm d2, putative [Ricinus communis]
Length = 169
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 67/80 (83%), Gaps = 9/80 (11%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---------PKTGKGKKKALPVNKDR 52
++ +NN +LLGRVR FDRHCNMVLENVREMWTE+ PKTGKGKKKA PVNKDR
Sbjct: 90 INCRNNKKLLGRVRTFDRHCNMVLENVREMWTEVYNYTLFIWVPKTGKGKKKAQPVNKDR 149
Query: 53 FISKMFLRGDSVIIVLRNPK 72
FISKMFLRGDSVIIVLRNP+
Sbjct: 150 FISKMFLRGDSVIIVLRNPE 169
>gi|302839956|ref|XP_002951534.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
gi|300263143|gb|EFJ47345.1| hypothetical protein VOLCADRAFT_81522 [Volvox carteri f.
nagariensis]
Length = 110
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 66/72 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNM+LENV+EMWTE+PKTGKG K + PVNKDRF+SKMFLR
Sbjct: 39 LINCRNNHKLLARVKAFDRHCNMILENVKEMWTEIPKTGKGSKGSRPVNKDRFVSKMFLR 98
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 99 GDSVIMVLRNPK 110
>gi|307108556|gb|EFN56796.1| hypothetical protein CHLNCDRAFT_22041 [Chlorella variabilis]
Length = 115
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 65/72 (90%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+E WTE+PK GKG K + PVNKDRFISKMFLR
Sbjct: 44 LINCRNNRKLLGRVKAFDRHCNMVLENVKEFWTEIPKRGKGAKASKPVNKDRFISKMFLR 103
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 104 GDSVILVLRNPK 115
>gi|255070809|ref|XP_002507486.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
gi|226522761|gb|ACO68744.1| small nuclear ribonucleoprotein sm D2 [Micromonas sp. RCC299]
Length = 101
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 67/72 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LLGRV+AFDRHCNMVLENV+E+WTE+PKTGKG KKA ++KDRF+SKMF+R
Sbjct: 30 LISCRNNRKLLGRVKAFDRHCNMVLENVKELWTEIPKTGKGCKKARTISKDRFLSKMFIR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 90 GDSVILVLRNPK 101
>gi|328768266|gb|EGF78313.1| hypothetical protein BATDEDRAFT_90808 [Batrachochytrium
dendrobatidis JAM81]
Length = 115
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 61/66 (92%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+NN +LL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKMFLRGDSV
Sbjct: 48 RNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKMFLRGDSV 107
Query: 65 IIVLRN 70
I+VLRN
Sbjct: 108 ILVLRN 113
>gi|428173912|gb|EKX42811.1| hypothetical protein GUITHDRAFT_153446 [Guillardia theta
CCMP2712]
Length = 99
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE P+TGKGK K+ PVNKDRFISKMFLR
Sbjct: 28 LINCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPRTGKGKAKSKPVNKDRFISKMFLR 87
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 88 GDSVIMVLKNP 98
>gi|221114937|ref|XP_002158231.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Hydra magnipapillata]
Length = 118
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 67/81 (82%), Gaps = 11/81 (13%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
M SVKNNTQ LLGRV+AFDRHCNMVLENV+EMW E+PKTGKG KKA P+NK
Sbjct: 33 MTSVKNNTQVLINCRNNRKLLGRVKAFDRHCNMVLENVKEMWYEIPKTGKG-KKAKPINK 91
Query: 51 DRFISKMFLRGDSVIIVLRNP 71
DR+I+KMFLRGDSVI+VL+NP
Sbjct: 92 DRYIAKMFLRGDSVILVLKNP 112
>gi|297598393|ref|NP_001045506.2| Os01g0967000 [Oryza sativa Japonica Group]
gi|255674111|dbj|BAF07420.2| Os01g0967000 [Oryza sativa Japonica Group]
Length = 226
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/63 (85%), Positives = 60/63 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRVRAFD HCNMVLENVREMWTE+PKTGKGKKKALPVNKDRFISKMFLR
Sbjct: 156 LINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLR 215
Query: 61 GDS 63
GDS
Sbjct: 216 GDS 218
>gi|241690286|ref|XP_002411748.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|215504583|gb|EEC14077.1| small nuclear ribonucleoprotein sm D2, putative [Ixodes scapularis]
gi|442752791|gb|JAA68555.1| Putative small nuclear ribonucleoprotein d2 polypeptide [Ixodes
ricinus]
Length = 118
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGK KK PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN-PVNKDRYISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 102 GDSVILVLKNP 112
>gi|427786227|gb|JAA58565.1| Putative small nuclear ribonucleoprotein d2 polypeptide
[Rhipicephalus pulchellus]
Length = 118
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGK KK PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPKTGKSKKNN-PVNKDRYISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 102 GDSVILVLKNP 112
>gi|298710498|emb|CBJ25562.1| small nuclear ribonucleoprotein D2-like protein [Ectocarpus
siliculosus]
Length = 82
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 65/71 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL R++AFDRHCNMVL +V+EMWTE PKTGKG+KKA VNKDR++SKMFLR
Sbjct: 11 LINVRNNHKLLARIKAFDRHCNMVLTDVKEMWTEQPKTGKGQKKAKAVNKDRYVSKMFLR 70
Query: 61 GDSVIIVLRNP 71
GDSV++VLRNP
Sbjct: 71 GDSVVLVLRNP 81
>gi|134948671|ref|NP_001077096.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
gi|117606770|gb|ABK42005.1| small nuclear ribonucleoprotein sm d2 [Bombyx mori]
Length = 119
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG KK VNKD+FISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG-KKGKAVNKDKFISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 102 GDSVILVLRNP 112
>gi|346468901|gb|AEO34295.1| hypothetical protein [Amblyomma maculatum]
gi|346468903|gb|AEO34296.1| hypothetical protein [Amblyomma maculatum]
gi|346468905|gb|AEO34297.1| hypothetical protein [Amblyomma maculatum]
Length = 118
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+TGK KK PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKSKKNN-PVNKDRYISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 102 GDSVILVLKNP 112
>gi|357627860|gb|EHJ77403.1| small nuclear ribonucleoprotein sm d2 [Danaus plexippus]
Length = 109
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKG KK VNKD+FISKMFLR
Sbjct: 33 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKG-KKGKAVNKDKFISKMFLR 91
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 92 GDSVILVLRNP 102
>gi|391344476|ref|XP_003746524.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Metaseiulus occidentalis]
Length = 116
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE P+T KG +K PVNKDRFI KMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTETPRTAKG-RKGQPVNKDRFIPKMFLR 100
Query: 61 GDSVIIVLRNP 71
GDSVIIVLRNP
Sbjct: 101 GDSVIIVLRNP 111
>gi|196006700|ref|XP_002113216.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
gi|190583620|gb|EDV23690.1| hypothetical protein TRIADDRAFT_57149 [Trichoplax adhaerens]
Length = 173
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 65/71 (91%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++L RV+AFDRHCNMVLENV+EMWTE P+TGKG +KA PVNKDR+ISKMFLR
Sbjct: 95 LINCRNNRKILARVKAFDRHCNMVLENVKEMWTETPRTGKG-RKAKPVNKDRYISKMFLR 153
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 154 GDSVILVLKNP 164
>gi|302766595|ref|XP_002966718.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
gi|300166138|gb|EFJ32745.1| hypothetical protein SELMODRAFT_439675 [Selaginella moellendorffii]
Length = 1249
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 61/72 (84%), Positives = 69/72 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENVREMWTE+PKTGKGKKKA PVNKDRFISKMFLR
Sbjct: 1057 LINCRNNRKLLGRVKAFDRHCNMVLENVREMWTEVPKTGKGKKKAKPVNKDRFISKMFLR 1116
Query: 61 GDSVIIVLRNPK 72
GDSVIIVL+NPK
Sbjct: 1117 GDSVIIVLKNPK 1128
>gi|384500116|gb|EIE90607.1| small nuclear ribonucleoprotein Sm D2 [Rhizopus delemar RA 99-880]
Length = 113
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 63/70 (90%), Gaps = 1/70 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P+TGKG KA PVNKDRF+SKMFLR
Sbjct: 43 LISCRNNHKLLARVKAFDRHCNMVLENVKEMWTETPRTGKG-SKAKPVNKDRFVSKMFLR 101
Query: 61 GDSVIIVLRN 70
GD+V++VLRN
Sbjct: 102 GDTVVLVLRN 111
>gi|134108164|ref|XP_777280.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259967|gb|EAL22633.1| hypothetical protein CNBB2650 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 165
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 63/70 (90%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKGKK PVNKDRFISKMFLR
Sbjct: 98 LISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK-GKGKK---PVNKDRFISKMFLR 153
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 154 GDSVILVLRN 163
>gi|58263220|ref|XP_569020.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|321249059|ref|XP_003191330.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|57223670|gb|AAW41713.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457797|gb|ADV19543.1| Pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118541|gb|AFR93315.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 111
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 63/70 (90%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKGKK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHCNMVLENVKEMWTETPK-GKGKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 100 GDSVILVLRN 109
>gi|168044533|ref|XP_001774735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673890|gb|EDQ60406.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 103
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 70/81 (86%), Gaps = 10/81 (12%)
Query: 2 MSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 51
MSVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKD
Sbjct: 23 MSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKD 82
Query: 52 RFISKMFLRGDSVIIVLRNPK 72
RFISKMFLRGDSVIIVLRNPK
Sbjct: 83 RFISKMFLRGDSVIIVLRNPK 103
>gi|303274376|ref|XP_003056509.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
gi|226462593|gb|EEH59885.1| small nuclear ribonucleoprotein sm D2 [Micromonas pusilla CCMP1545]
Length = 103
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 64/72 (88%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLG+++AFDRHCNMVLENV+E W E+ KTGKG K+ P++K+RFISKMFLR
Sbjct: 32 LINCRNNRKLLGQIKAFDRHCNMVLENVKEYWLEVSKTGKGVKRTTPIHKERFISKMFLR 91
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 92 GDSVILVLRNPK 103
>gi|168057690|ref|XP_001780846.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667702|gb|EDQ54325.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 70/81 (86%), Gaps = 10/81 (12%)
Query: 2 MSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 51
MSVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKD
Sbjct: 19 MSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKD 78
Query: 52 RFISKMFLRGDSVIIVLRNPK 72
RFISKMFLRG+SVIIVLRNPK
Sbjct: 79 RFISKMFLRGESVIIVLRNPK 99
>gi|313226859|emb|CBY22004.1| unnamed protein product [Oikopleura dioica]
gi|313242576|emb|CBY34708.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +L+GRV+AFDRHCNMVLENV+EMW E PKT KG K PVN+DRFISKMFLR
Sbjct: 44 LINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTAKG-KGGQPVNRDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVIIVL+NP
Sbjct: 103 GDSVIIVLKNP 113
>gi|443703701|gb|ELU01136.1| hypothetical protein CAPTEDRAFT_149444 [Capitella teleta]
Length = 118
Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDRFISKMFLR
Sbjct: 44 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRFISKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|313214959|emb|CBY41164.1| unnamed protein product [Oikopleura dioica]
Length = 118
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 62/71 (87%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +L+GRV+AFDRHCNMVLENV+EMW E PKT KG K PVN+DRFISKMFLR
Sbjct: 44 LINCRNNRKLMGRVKAFDRHCNMVLENVKEMWVERPKTSKG-KGGQPVNRDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVIIVL+NP
Sbjct: 103 GDSVIIVLKNP 113
>gi|348676937|gb|EGZ16754.1| hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae]
Length = 123
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL RV+AFDRHCNMVLENV+EMWTE+PK+GKGKK A PVNKDRF+SKMFLR
Sbjct: 51 LINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKAAKPVNKDRFVSKMFLR 110
Query: 61 GDSVIIVLRNP 71
GDSVIIVLRNP
Sbjct: 111 GDSVIIVLRNP 121
>gi|402217994|gb|EJT98072.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 111
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 63/70 (90%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GKGKK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNRKLLARVKAFDRHTNMVLENVKEMWTEVPK-GKGKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 100 GDSVILVLRN 109
>gi|339252990|ref|XP_003371718.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
gi|316967993|gb|EFV52337.1| small nuclear ribonucleoprotein Sm D2 [Trichinella spiralis]
Length = 118
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 63/72 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++N +L+ RV+AFDRHCNM+LENV+EMWTE+P+ GKG+K+ VNKDRFISKMFLR
Sbjct: 38 LIDCRHNRKLIARVKAFDRHCNMILENVKEMWTEIPRVGKGQKRGNAVNKDRFISKMFLR 97
Query: 61 GDSVIIVLRNPK 72
GD VI+V++NP+
Sbjct: 98 GDIVILVMKNPQ 109
>gi|328768108|gb|EGF78155.1| hypothetical protein BATDEDRAFT_91018 [Batrachochytrium
dendrobatidis JAM81]
Length = 109
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 55/61 (90%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+NN +LL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKMFLRGDS
Sbjct: 48 RNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKMFLRGDSG 107
Query: 65 I 65
I
Sbjct: 108 I 108
>gi|294882885|ref|XP_002769869.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
gi|239873682|gb|EER02587.1| Small nuclear ribonucleoprotein Sm D2, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 63/72 (87%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++LGRV+AFDRH NMVLENVRE+WTE+PK G KK PVNKDRF+SKMFLR
Sbjct: 39 LINCRNNRKILGRVKAFDRHFNMVLENVRELWTEVPKGGSNKK---PVNKDRFVSKMFLR 95
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 96 GDSVIMVLRNPK 107
>gi|328867188|gb|EGG15571.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 110
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL RVRAFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMFLR
Sbjct: 37 LINVRNNKKLLARVRAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 97 GDSVILVLKNP 107
>gi|66809065|ref|XP_638255.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853875|sp|Q54NC5.1|SMD2_DICDI RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|60466721|gb|EAL64772.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 112
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLR
Sbjct: 34 LINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLR 93
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 94 GDSVILVLKNP 104
>gi|330793131|ref|XP_003284639.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
gi|325085438|gb|EGC38845.1| hypothetical protein DICPUDRAFT_86347 [Dictyostelium purpureum]
Length = 116
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLR
Sbjct: 38 LINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLR 97
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 98 GDSVILVLKNP 108
>gi|291224549|ref|XP_002732266.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-4)-like [Saccoglossus kowalevskii]
Length = 123
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMFLR
Sbjct: 48 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLR 107
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 108 GDSVILVLRNP 118
>gi|406866515|gb|EKD19555.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 106
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PKT G KK PVNKDRFISKMFLR
Sbjct: 38 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEAPKTS-GGKKGRPVNKDRFISKMFLR 96
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 97 GDSVILVL 104
>gi|395334237|gb|EJF66613.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 111
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTELPK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTELPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 100 GDSVILVLRN 109
>gi|112253319|gb|ABI14247.1| Sm-like protein [Pfiesteria piscicida]
gi|112253321|gb|ABI14248.1| small nuclear ribonucleoprotein D2-like protein [Pfiesteria
piscicida]
Length = 101
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 63/72 (87%), Gaps = 2/72 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++L RV+AFDRH NMVLENVREMWTE+P GKKKA PVNKDRFI+K+FLR
Sbjct: 32 LINCRNNRKILARVKAFDRHSNMVLENVREMWTEVPHG--GKKKAKPVNKDRFITKLFLR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 90 GDSVILVLRNPK 101
>gi|71021395|ref|XP_760928.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|46101003|gb|EAK86236.1| hypothetical protein UM04781.1 [Ustilago maydis 521]
gi|343426204|emb|CBQ69735.1| probable small nuclear ribonucleoprotein chain D2 [Sporisorium
reilianum SRZ2]
gi|443900125|dbj|GAC77452.1| 17 beta-hydroxysteroid dehydrogenase type 3 [Pseudozyma antarctica
T-34]
Length = 111
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 63/70 (90%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GKGKK PVNKDRFISKMFLR
Sbjct: 44 LIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKGKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSV++VLRN
Sbjct: 100 GDSVVLVLRN 109
>gi|388857230|emb|CCF49243.1| probable small nuclear ribonucleoprotein chain D2 [Ustilago hordei]
Length = 111
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 63/70 (90%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GKGKK PVNKDRFISKMFLR
Sbjct: 44 LIALRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKGKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSV++VLRN
Sbjct: 100 GDSVVLVLRN 109
>gi|126697412|gb|ABO26663.1| small nuclear ribonucleoprotein D2-like protein [Haliotis discus
discus]
Length = 119
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMFLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|242024699|ref|XP_002432764.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
gi|212518249|gb|EEB20026.1| small nuclear ribonucleoprotein sm D2, putative [Pediculus humanus
corporis]
Length = 110
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP++GKGKKKA VNKDRFISKMFLR
Sbjct: 33 LINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPRSGKGKKKAKSVNKDRFISKMFLR 92
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 93 GDSVILVLRNP 103
>gi|403332734|gb|EJY65407.1| Small nuclear riboprotein Sm D2 [Oxytricha trifallax]
Length = 103
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 63/72 (87%), Gaps = 1/72 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRH NMVLENV EMWTE PK KG KKA PVN++R+ISKMFLR
Sbjct: 33 LVNCRNNRKLLGRVKAFDRHMNMVLENVCEMWTETPKPHKG-KKAHPVNRERYISKMFLR 91
Query: 61 GDSVIIVLRNPK 72
GDSVIIV+RNPK
Sbjct: 92 GDSVIIVIRNPK 103
>gi|430813655|emb|CCJ29007.1| unnamed protein product [Pneumocystis jirovecii]
Length = 114
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRH NMVLENV+EMWTE P+ KG KK PVNKDRFISKMFLR
Sbjct: 44 LISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNSKG-KKGKPVNKDRFISKMFLR 102
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 103 GDSVILVLRN 112
>gi|389644410|ref|XP_003719837.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|351639606|gb|EHA47470.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae 70-15]
gi|440470057|gb|ELQ39146.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae Y34]
gi|440490054|gb|ELQ69649.1| small nuclear ribonucleoprotein Sm D2 [Magnaporthe oryzae P131]
Length = 117
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 49 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASG-KKGRPVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|380476129|emb|CCF44882.1| small nuclear ribonucleoprotein Sm D2 [Colletotrichum higginsianum]
Length = 118
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 50 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|310794394|gb|EFQ29855.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 118
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 50 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|342880846|gb|EGU81864.1| hypothetical protein FOXB_07659 [Fusarium oxysporum Fo5176]
Length = 118
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 50 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|409083385|gb|EKM83742.1| hypothetical protein AGABI1DRAFT_124072 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 111
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 100 GDSVILVLRN 109
>gi|402078814|gb|EJT74079.1| small nuclear ribonucleoprotein Sm D2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 117
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 49 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|405978739|gb|EKC43103.1| Putative small nuclear ribonucleoprotein Sm D2 [Crassostrea gigas]
Length = 119
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMFLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI++LRNP
Sbjct: 104 GDSVILILRNP 114
>gi|429861913|gb|ELA36576.1| small nuclear ribonucleoprotein sm d2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 118
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 50 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|328765680|gb|EGF75829.1| hypothetical protein BATDEDRAFT_15195 [Batrachochytrium
dendrobatidis JAM81]
Length = 74
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 57/65 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +NN +LL RV+AFDRHCNMVLENV+EMWTE P+TGKG KKA PVNKDRFISKMFLR
Sbjct: 9 LVVCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPQTGKGIKKAKPVNKDRFISKMFLR 68
Query: 61 GDSVI 65
GDS I
Sbjct: 69 GDSGI 73
>gi|260835152|ref|XP_002612573.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
gi|229297951|gb|EEN68582.1| hypothetical protein BRAFLDRAFT_265042 [Branchiostoma floridae]
Length = 116
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ P+NKDR+ISKMFLR
Sbjct: 40 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPINKDRYISKMFLR 99
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 100 GDSVILVLRNP 110
>gi|325183558|emb|CCA18019.1| hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14]
Length = 110
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL RV+AFDRHCNMVLENV+EMWTE+PK+GKGKK PVNKDRF+SK+FLR
Sbjct: 38 LINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKSGKPVNKDRFVSKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDSV++VLRNP
Sbjct: 98 GDSVVLVLRNP 108
>gi|302909473|ref|XP_003050081.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731018|gb|EEU44368.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 117
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 49 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLANG-KKGRPVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|46125281|ref|XP_387194.1| hypothetical protein FG07018.1 [Gibberella zeae PH-1]
Length = 155
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 87 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-GGKKGRPVNKDRFISKMFLR 145
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 146 GDSVILVL 153
>gi|400600870|gb|EJP68538.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 118
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 50 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|389739270|gb|EIM80464.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 111
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEIPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI++LRN
Sbjct: 100 GDSVILILRN 109
>gi|225712108|gb|ACO11900.1| Probable small nuclear ribonucleoprotein Sm D2 [Lepeophtheirus
salmonis]
Length = 115
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLE+V+EMWTE+PKTGKGKKKA PVNKDR+ISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDRYISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 102 GDSVILVLRNP 112
>gi|22203734|gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Azumapecten
farreri]
Length = 119
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+PKTGKGKKK+ PVNKDR+ISKMFLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|408397992|gb|EKJ77129.1| hypothetical protein FPSE_02773 [Fusarium pseudograminearum CS3096]
Length = 117
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 49 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-GGKKGRPVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|242221237|ref|XP_002476371.1| predicted protein [Postia placenta Mad-698-R]
gi|220724376|gb|EED78423.1| predicted protein [Postia placenta Mad-698-R]
Length = 111
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI++LRN
Sbjct: 100 GDSVILILRN 109
>gi|170084079|ref|XP_001873263.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650815|gb|EDR15055.1| predicted protein [Laccaria bicolor S238N-H82]
gi|336377064|gb|EGO05399.1| hypothetical protein SERLA73DRAFT_174539 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390107|gb|EGO31250.1| hypothetical protein SERLADRAFT_456135 [Serpula lacrymans var.
lacrymans S7.9]
Length = 111
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI++LRN
Sbjct: 100 GDSVILILRN 109
>gi|388583928|gb|EIM24229.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 111
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE PK GKGK+ P+NKDRFISKMFLR
Sbjct: 44 LVSLRNNRKLLARVKAFDRHSNMVLENVKEMWTETPK-GKGKQ---PINKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 100 GDSVILVLRN 109
>gi|392597247|gb|EIW86569.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 111
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI++LRN
Sbjct: 100 GDSVILILRN 109
>gi|393247820|gb|EJD55327.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 111
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHTNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSV++VLRN
Sbjct: 100 GDSVVLVLRN 109
>gi|453086972|gb|EMF15013.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 121
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 60/68 (88%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LLGRV+AFDRHCNMVLENV+EMW+E P+T GKK + VNKDRFISKMFLR
Sbjct: 53 LISCRNNRKLLGRVKAFDRHCNMVLENVKEMWSETPRTSDGKKGRV-VNKDRFISKMFLR 111
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 112 GDSVILVL 119
>gi|353237783|emb|CCA69748.1| probable small nuclear ribonucleoprotein chain D2 [Piriformospora
indica DSM 11827]
Length = 122
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE P +GK KK PVNKDRFISKMFLR
Sbjct: 55 LISLRNNRKLLARVKAFDRHSNMVLENVKEMWTETP-SGKNKK---PVNKDRFISKMFLR 110
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 111 GDSVILVLRN 120
>gi|340517487|gb|EGR47731.1| predicted protein [Trichoderma reesei QM6a]
gi|358388581|gb|EHK26174.1| hypothetical protein TRIVIDRAFT_35950 [Trichoderma virens Gv29-8]
Length = 117
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|452985934|gb|EME85690.1| hypothetical protein MYCFIDRAFT_82569 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ G KK PVNKDRFISKMFLR
Sbjct: 54 LISCRNNRKLLCRVKAFDRHCNMVLENVKEMWTEIPRLADG-KKGRPVNKDRFISKMFLR 112
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 113 GDSVILVL 120
>gi|358392303|gb|EHK41707.1| hypothetical protein TRIATDRAFT_30322 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|156361110|ref|XP_001625363.1| predicted protein [Nematostella vectensis]
gi|156212193|gb|EDO33263.1| predicted protein [Nematostella vectensis]
Length = 119
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE PK+GKGKKKA PVNKDR+I+KMFLR
Sbjct: 44 LINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKAKPVNKDRYIAKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|198434899|ref|XP_002127683.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 119
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 65/71 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE PK+GKGKKK PVN+DRFISKMFLR
Sbjct: 43 LINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKQQPVNRDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVIIVL+NP
Sbjct: 103 GDSVIIVLKNP 113
>gi|390604110|gb|EIN13501.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 111
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 62/70 (88%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLR+
Sbjct: 100 GDSVILVLRH 109
>gi|91090234|ref|XP_968776.1| PREDICTED: similar to CG1249 CG1249-PA [Tribolium castaneum]
gi|270013456|gb|EFA09904.1| hypothetical protein TcasGA2_TC012054 [Tribolium castaneum]
Length = 118
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCN+VLENV+EMWTELP+ GKGKKKA PVNKDRFISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNIVLENVKEMWTELPRPGKGKKKAKPVNKDRFISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GD+VIIV+RNP
Sbjct: 102 GDAVIIVVRNP 112
>gi|323456239|gb|EGB12106.1| hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens]
Length = 104
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL RV+AFDRHCNMVLENV+E+WTE+PKTGKGKKK+ PVNK+R+ISKMFLR
Sbjct: 31 LINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLR 90
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 91 GDSVILVLRNP 101
>gi|440635668|gb|ELR05587.1| small nuclear ribonucleoprotein D2 [Geomyces destructans 20631-21]
Length = 118
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLA-GGKKGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|332376785|gb|AEE63532.1| unknown [Dendroctonus ponderosae]
Length = 117
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+ GKGKKKA PVNKDRFISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRPGKGKKKAKPVNKDRFISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GD+VI+++RNP
Sbjct: 102 GDAVIMIVRNP 112
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 59/71 (83%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +NN +LL RV+AFDRH NM+LE+VRE WTE + GKGK K+ PVNKDRFISK+FLR
Sbjct: 42 FINCRNNRKLLARVKAFDRHFNMILEDVREFWTEGTRAGKGKTKSKPVNKDRFISKLFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVII+L NP
Sbjct: 102 GDSVIIILPNP 112
>gi|322703763|gb|EFY95367.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium anisopliae ARSEF
23]
Length = 121
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRHCNMVLENV+EMW E P+ G KK PVNKDRFISKMFLR
Sbjct: 53 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWDETPRLADG-KKGRPVNKDRFISKMFLR 111
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 112 GDSVILVL 119
>gi|256085048|ref|XP_002578736.1| small nuclear ribonucleoprotein Sm D2 [Schistosoma mansoni]
gi|360045476|emb|CCD83024.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
mansoni]
Length = 124
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+FLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|145535864|ref|XP_001453665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421387|emb|CAK86268.1| unnamed protein product [Paramecium tetraurelia]
Length = 103
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++NN +LLGRV+AFDRH NM+LENV EMWTE+PK KG KKA NK+RFI KMFLR
Sbjct: 33 LIELRNNRKLLGRVKAFDRHMNMILENVTEMWTEIPKGNKG-KKAHATNKERFIPKMFLR 91
Query: 61 GDSVIIVLRNPK 72
GDSVI +LRNPK
Sbjct: 92 GDSVIYILRNPK 103
>gi|398391274|ref|XP_003849097.1| small nuclear ribonucleoprotein Sm D2 [Zymoseptoria tritici IPO323]
gi|339468973|gb|EGP84073.1| hypothetical protein MYCGRDRAFT_101457 [Zymoseptoria tritici
IPO323]
Length = 122
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN ++L RV+AFDRHCNMVLENV+EMWTE+P+ G KK PVNKDRFISKMFLR
Sbjct: 54 LISCRNNRKMLARVKAFDRHCNMVLENVKEMWTEVPRLTDG-KKGRPVNKDRFISKMFLR 112
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 113 GDSVILVL 120
>gi|112143936|gb|ABI13177.1| putative small nuclear ribonucleoprotein d2 [Emiliania huxleyi]
Length = 110
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK GKG KKA PVNKDRFISKMFLR
Sbjct: 39 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKKGKGVKKAKPVNKDRFISKMFLR 98
Query: 61 GDSVIIVLRNPK 72
GDSVIIVLRNPK
Sbjct: 99 GDSVIIVLRNPK 110
>gi|393218655|gb|EJD04143.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 112
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMW E+PK GK KK PVNKDRFISKMFLR
Sbjct: 45 LISLRNNKKLLARVKAFDRHTNMVLENVKEMWVEVPK-GKNKK---PVNKDRFISKMFLR 100
Query: 61 GDSVIIVLRN 70
GDSVI++LRN
Sbjct: 101 GDSVILILRN 110
>gi|340959200|gb|EGS20381.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 592
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++SV++ +LL RV+AFDRHCNM+LENV+EMWTE P T KK PVNKDRFISKMFLR
Sbjct: 525 LISVRSGRKLLARVKAFDRHCNMILENVKEMWTETPVT--NGKKGRPVNKDRFISKMFLR 582
Query: 61 GDSVIIVL 68
GDSV+IVL
Sbjct: 583 GDSVVIVL 590
>gi|392571577|gb|EIW64749.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 111
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK VNKDRFISKMFLR
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEMPK-GKNKK---AVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 100 GDSVILVLRN 109
>gi|226470754|emb|CAX76810.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470756|emb|CAX76811.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470758|emb|CAX76812.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470760|emb|CAX76813.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470762|emb|CAX76814.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470764|emb|CAX76815.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470766|emb|CAX76816.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226470768|emb|CAX76817.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473196|emb|CAX71284.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473198|emb|CAX71285.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473200|emb|CAX71286.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
gi|226473202|emb|CAX71287.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 124
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+FLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|224010008|ref|XP_002293962.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970634|gb|EED88971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 108
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 62/71 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LLGRV+A+DRH N++LE+V+EMWTE K GKG+K+ +NKDR++SKMFLR
Sbjct: 29 LVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEYSKGGKGRKRGTSINKDRYVSKMFLR 88
Query: 61 GDSVIIVLRNP 71
GDSVI+V+ NP
Sbjct: 89 GDSVILVVSNP 99
>gi|195061660|ref|XP_001996040.1| GH14279 [Drosophila grimshawi]
gi|193891832|gb|EDV90698.1| GH14279 [Drosophila grimshawi]
Length = 128
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 51 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 110
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 111 GDSVILVLRNP 121
>gi|225711330|gb|ACO11511.1| Probable small nuclear ribonucleoprotein Sm D2 [Caligus
rogercresseyi]
Length = 115
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 68/79 (86%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQLL----------GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ+L GRV+AFDRHCNMVLE+V+EMWTE+PKTGKGKKKA PVNKDR
Sbjct: 34 SVKNNTQVLINCRNNKKPLGRVKAFDRHCNMVLESVKEMWTEMPKTGKGKKKAKPVNKDR 93
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISKMFLRGDS+I+VLRNP
Sbjct: 94 YISKMFLRGDSIILVLRNP 112
>gi|449302285|gb|EMC98294.1| hypothetical protein BAUCODRAFT_146847 [Baudoinia compniacensis
UAMH 10762]
Length = 119
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G K+ PVNKDRFISKMFLR
Sbjct: 51 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLTDG-KRGRPVNKDRFISKMFLR 109
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 110 GDSVILVL 117
>gi|407927523|gb|EKG20414.1| hypothetical protein MPH_02260 [Macrophomina phaseolina MS6]
Length = 118
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK G K PVNKDRFISKMFLR
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKLANG-KPGRPVNKDRFISKMFLR 108
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 109 GDSVILVL 116
>gi|452846138|gb|EME48071.1| hypothetical protein DOTSEDRAFT_21783 [Dothistroma septosporum
NZE10]
Length = 121
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ G KK VNKDRFISKMFLR
Sbjct: 53 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEIPRLADG-KKGRAVNKDRFISKMFLR 111
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 112 GDSVILVL 119
>gi|195144664|ref|XP_002013316.1| GL23477 [Drosophila persimilis]
gi|194102259|gb|EDW24302.1| GL23477 [Drosophila persimilis]
Length = 124
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 47 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 106
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 107 GDSVILVLRNP 117
>gi|21357623|ref|NP_649645.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|195109364|ref|XP_001999257.1| GI23171 [Drosophila mojavensis]
gi|195343951|ref|XP_002038554.1| GM10560 [Drosophila sechellia]
gi|195568713|ref|XP_002102358.1| GD19551 [Drosophila simulans]
gi|390178314|ref|XP_001358903.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
gi|33112452|sp|Q9VI10.1|SMD2_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|7298930|gb|AAF54135.1| small ribonucleoprotein particle protein SmD2 [Drosophila
melanogaster]
gi|17861966|gb|AAL39460.1| LD03002p [Drosophila melanogaster]
gi|193915851|gb|EDW14718.1| GI23171 [Drosophila mojavensis]
gi|194133575|gb|EDW55091.1| GM10560 [Drosophila sechellia]
gi|194198285|gb|EDX11861.1| GD19551 [Drosophila simulans]
gi|220952896|gb|ACL88991.1| snRNP2-PA [synthetic construct]
gi|388859402|gb|EAL28046.3| GA11659 [Drosophila pseudoobscura pseudoobscura]
Length = 119
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 102 GDSVILVLRNP 112
>gi|358342021|dbj|GAA49579.1| small nuclear ribonucleoprotein D2 [Clonorchis sinensis]
Length = 124
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDR+ISK+FLR
Sbjct: 45 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRYISKLFLR 104
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 105 GDSVILVLRNP 115
>gi|195453024|ref|XP_002073604.1| GK14204 [Drosophila willistoni]
gi|194169689|gb|EDW84590.1| GK14204 [Drosophila willistoni]
Length = 120
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVILVLRNP 113
>gi|168017146|ref|XP_001761109.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687795|gb|EDQ74176.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 99
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 69/81 (85%), Gaps = 10/81 (12%)
Query: 2 MSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 51
MSVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK GKGKKKA PVNKD
Sbjct: 19 MSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKAGKGKKKAKPVNKD 78
Query: 52 RFISKMFLRGDSVIIVLRNPK 72
RFISKMFLRGDSVIIVLRNPK
Sbjct: 79 RFISKMFLRGDSVIIVLRNPK 99
>gi|119115655|ref|XP_318388.2| AGAP003936-PA [Anopheles gambiae str. PEST]
gi|116119487|gb|EAA13684.2| AGAP003936-PA [Anopheles gambiae str. PEST]
Length = 119
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 68/72 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK PVNKDRFISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEIPRTGKGKKKVKPVNKDRFISKMFLR 101
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNP+
Sbjct: 102 GDSVILVLRNPQ 113
>gi|195502267|ref|XP_002098148.1| GE24106 [Drosophila yakuba]
gi|194184249|gb|EDW97860.1| GE24106 [Drosophila yakuba]
Length = 123
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 46 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 105
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 106 GDSVILVLRNP 116
>gi|167516090|ref|XP_001742386.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779010|gb|EDQ92624.1| predicted protein [Monosiga brevicollis MX1]
Length = 123
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 62/71 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +NN +LL RV+AFDRHCNMVLE V+EMWTE PK GKG+KK P+NKDRFISKMFLR
Sbjct: 48 LIFCRNNKKLLARVKAFDRHCNMVLEQVKEMWTETPKAGKGQKKKKPINKDRFISKMFLR 107
Query: 61 GDSVIIVLRNP 71
GD+VI+VLRNP
Sbjct: 108 GDTVILVLRNP 118
>gi|237832903|ref|XP_002365749.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|401408795|ref|XP_003883846.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
gi|211963413|gb|EEA98608.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
ME49]
gi|221488207|gb|EEE26421.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
GT1]
gi|221508720|gb|EEE34289.1| small nuclear ribonucleoprotein Sm D2, putative [Toxoplasma gondii
VEG]
gi|325118263|emb|CBZ53814.1| hypothetical protein NCLIV_035950 [Neospora caninum Liverpool]
Length = 104
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%), Gaps = 1/72 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++LGRV+AFDRHCN+VL +VREMWTE K G GKKK VNKDRFISK+FLR
Sbjct: 34 LINCRNNRKVLGRVKAFDRHCNLVLTDVREMWTETSKGG-GKKKVRTVNKDRFISKLFLR 92
Query: 61 GDSVIIVLRNPK 72
GD+VI++LRNPK
Sbjct: 93 GDAVILILRNPK 104
>gi|309264759|ref|XP_003086355.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 66/79 (83%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ PVNKD
Sbjct: 35 SVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDC 94
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISK+FLRGDSVI+VLRNP
Sbjct: 95 YISKIFLRGDSVIVVLRNP 113
>gi|194899029|ref|XP_001979065.1| GG10522 [Drosophila erecta]
gi|190650768|gb|EDV48023.1| GG10522 [Drosophila erecta]
Length = 121
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 44 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 103
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 104 GDSVILVLRNP 114
>gi|63501063|ref|XP_619909.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Mus
musculus]
Length = 118
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 66/79 (83%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ PVNKD
Sbjct: 35 SVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDC 94
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISK+FLRGDSVI+VLRNP
Sbjct: 95 YISKIFLRGDSVIVVLRNP 113
>gi|195399858|ref|XP_002058536.1| GJ14487 [Drosophila virilis]
gi|194142096|gb|EDW58504.1| GJ14487 [Drosophila virilis]
Length = 125
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLR
Sbjct: 48 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLR 107
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 108 GDSVILVLRNP 118
>gi|157124529|ref|XP_001654090.1| small nuclear ribonucleoprotein sm d2 [Aedes aegypti]
gi|108873936|gb|EAT38161.1| AAEL009914-PA [Aedes aegypti]
Length = 119
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 68/72 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK PVNKDRFISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKVKPVNKDRFISKMFLR 101
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNP+
Sbjct: 102 GDSVILVLRNPQ 113
>gi|70997219|ref|XP_753362.1| small nuclear ribonucleoprotein SmD2 [Aspergillus fumigatus Af293]
gi|66850998|gb|EAL91324.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus Af293]
gi|159126913|gb|EDP52029.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
fumigatus A1163]
Length = 122
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMFLR
Sbjct: 57 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMFLR 112
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 113 GDSVILVL 120
>gi|242762206|ref|XP_002340329.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723525|gb|EED22942.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 114
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGR----GVNKDRFISKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|119478615|ref|XP_001259398.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
gi|121713894|ref|XP_001274558.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119402711|gb|EAW13132.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus
clavatus NRRL 1]
gi|119407552|gb|EAW17501.1| small nuclear ribonucleoprotein SmD2, putative [Neosartorya
fischeri NRRL 181]
Length = 115
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMFLR
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMFLR 105
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 106 GDSVILVL 113
>gi|345568451|gb|EGX51345.1| hypothetical protein AOL_s00054g415 [Arthrobotrys oligospora ATCC
24927]
Length = 112
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRH NMVLENV+EMWTE P+ +G KK PVNKDRFISKMFLR
Sbjct: 44 LISCRNNRKLLARVKAFDRHSNMVLENVKEMWTETPRNAQG-KKGRPVNKDRFISKMFLR 102
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 103 GDSVILVL 110
>gi|444732316|gb|ELW72617.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 199
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 65/71 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGR +AFDRHCNM LENV+EMWTE+PK+GKGKKK PVNKDR+ISKMFLR
Sbjct: 34 LINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKFKPVNKDRYISKMFLR 93
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 94 GDSVIVVLQNP 104
>gi|212529806|ref|XP_002145060.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074458|gb|EEA28545.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGR----GVNKDRFISKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|156058484|ref|XP_001595165.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980]
gi|154701041|gb|EDO00780.1| hypothetical protein SS1G_03254 [Sclerotinia sclerotiorum 1980
UF-70]
gi|347839440|emb|CCD54012.1| similar to small nuclear ribonucleoprotein sm d2 [Botryotinia
fuckeliana]
Length = 118
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 60/69 (86%), Gaps = 3/69 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK-TGKGKKKALPVNKDRFISKMFL 59
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P+ +G GK + PVNKDRFISKMFL
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLSGGGKGR--PVNKDRFISKMFL 107
Query: 60 RGDSVIIVL 68
RGDSVI+VL
Sbjct: 108 RGDSVILVL 116
>gi|226470770|emb|CAX76818.1| putative small nuclear ribonucleoprotein Sm D2 [Schistosoma
japonicum]
Length = 87
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK+ PVNKDRFISK+FLR
Sbjct: 7 LINCRNNKKLLARVKAFDRHCNMVLENVKEMWTEVPRPGKGKKKSKPVNKDRFISKLFLR 66
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 67 GDSVILVLRNP 77
>gi|290972303|ref|XP_002668893.1| predicted protein [Naegleria gruberi]
gi|290991668|ref|XP_002678457.1| predicted protein [Naegleria gruberi]
gi|284082430|gb|EFC36149.1| predicted protein [Naegleria gruberi]
gi|284092069|gb|EFC45713.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 65/72 (90%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK+GKG+KK+ P+NK RF +K+FLR
Sbjct: 46 LISCRNNRKLLARVKAFDRHCNMVLENVQEMWTEQPKSGKGRKKSKPINKTRFTNKLFLR 105
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 106 GDSVILVLRNPK 117
>gi|425772328|gb|EKV10736.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum Pd1]
gi|425777592|gb|EKV15755.1| Small nuclear ribonucleoprotein SmD2, putative [Penicillium
digitatum PHI26]
Length = 117
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK KGK VNKDRFISKMFLR
Sbjct: 52 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGAKGKG----VNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|134081955|emb|CAK97221.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK G GK VNKDRFISKMFLR
Sbjct: 52 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGNGK----GVNKDRFISKMFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|317034834|ref|XP_001401271.2| small nuclear ribonucleoprotein Sm D2 [Aspergillus niger CBS
513.88]
gi|350639668|gb|EHA28022.1| hypothetical protein ASPNIDRAFT_41962 [Aspergillus niger ATCC 1015]
gi|358374829|dbj|GAA91418.1| small nuclear ribonucleoprotein SmD2 [Aspergillus kawachii IFO
4308]
Length = 115
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK G GK VNKDRFISKMFLR
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGNGKG----VNKDRFISKMFLR 105
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 106 GDSVILVL 113
>gi|255954305|ref|XP_002567905.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589616|emb|CAP95763.1| Pc21g08660 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 57/68 (83%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK KGK VNKDRFISKMFLR
Sbjct: 58 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGAKGKG----VNKDRFISKMFLR 113
Query: 61 GDSVIIVL 68
GDSVI++L
Sbjct: 114 GDSVILIL 121
>gi|115387341|ref|XP_001211176.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
gi|114195260|gb|EAU36960.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus terreus NIH2624]
Length = 115
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK KGK VNKDRFISKMFLR
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGSKGKG----VNKDRFISKMFLR 105
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 106 GDSVILVL 113
>gi|331242627|ref|XP_003333959.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312949|gb|EFP89540.1| small nuclear ribonucleoprotein Sm D2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|328861040|gb|EGG10144.1| hypothetical protein MELLADRAFT_94522 [Melampsora larici-populina
98AG31]
Length = 111
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++++NN +LL RV+AFDRH NMVL NV+EMWTELPK GK KK PVNKDRFISKMFLR
Sbjct: 44 LIALRNNRKLLARVKAFDRHSNMVLVNVKEMWTELPK-GKNKK---PVNKDRFISKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLR+
Sbjct: 100 GDSVILVLRH 109
>gi|219113577|ref|XP_002186372.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583222|gb|ACI65842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 122
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 61/71 (85%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL RV+A+DRH N++LE+V+EMWTE+ K GKG+ + VNKDR++SKMFLR
Sbjct: 37 LINVRNNHKLLARVKAYDRHMNLLLEDVKEMWTEVSKGGKGRTRGTAVNKDRYVSKMFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVI+V+ NP
Sbjct: 97 GDSVILVVSNP 107
>gi|170030740|ref|XP_001843246.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
gi|167867922|gb|EDS31305.1| small nuclear ribonucleoprotein sm d2 [Culex quinquefasciatus]
Length = 119
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 67/72 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+P+ GKGKKK PVNKDRFISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRAGKGKKKVKPVNKDRFISKMFLR 101
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNP+
Sbjct: 102 GDSVILVLRNPQ 113
>gi|346975454|gb|EGY18906.1| small nuclear ribonucleoprotein Sm D2 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%), Gaps = 6/73 (8%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENV-----REMWTELPKTGKGKKKALPVNKDRFIS 55
++S++NN +LL RV+AFDRHCNMVLENV +EMWTE P+ G KK PVNKDRFIS
Sbjct: 49 LISIRNNRKLLARVKAFDRHCNMVLENVVRTRLKEMWTETPRNADG-KKGRPVNKDRFIS 107
Query: 56 KMFLRGDSVIIVL 68
KMFLRGDSVI+VL
Sbjct: 108 KMFLRGDSVILVL 120
>gi|320590837|gb|EFX03280.1| small nuclear ribonucleoprotein sm d2 [Grosmannia clavigera kw1407]
Length = 116
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 58/68 (85%), Gaps = 2/68 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N +LL RV+AFDRHCNM+LENV+EMWTE P T KK PVNKDRFISKMFLR
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPVT--NGKKGRPVNKDRFISKMFLR 106
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 107 GDSVILVL 114
>gi|444732321|gb|ELW72622.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 170
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 64/71 (90%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGR +AFDRHCNM LENV+EMWTE+PK+GKGKKK PVNKDR+ISK FLR
Sbjct: 34 LINCRNNKKLLGRGKAFDRHCNMALENVKEMWTEVPKSGKGKKKFKPVNKDRYISKKFLR 93
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 94 GDSVIVVLQNP 104
>gi|164426898|ref|XP_961124.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
gi|157071520|gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A]
Length = 119
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+ GKK PVNKDRFISKMFLR
Sbjct: 51 LISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK-PVNKDRFISKMFLR 109
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 110 GDSVILVL 117
>gi|380092270|emb|CCC10046.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 119
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+ GKK PVNKDRFISKMFLR
Sbjct: 51 LISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK-PVNKDRFISKMFLR 109
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 110 GDSVILVL 117
>gi|336472988|gb|EGO61148.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2508]
gi|350293763|gb|EGZ74848.1| small nuclear ribonucleoprotein Sm D2 [Neurospora tetrasperma FGSC
2509]
Length = 119
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+ GKK PVNKDRFISKMFLR
Sbjct: 51 LISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANGKKGK-PVNKDRFISKMFLR 109
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 110 GDSVILVL 117
>gi|336274873|ref|XP_003352190.1| hypothetical protein SMAC_02625 [Sordaria macrospora k-hell]
Length = 108
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMFLR
Sbjct: 40 LISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMFLR 98
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 99 GDSVILVL 106
>gi|367050014|ref|XP_003655386.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
gi|347002650|gb|AEO69050.1| hypothetical protein THITE_2119053 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N +LL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKMFLR
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNGKKGRPVNKDRFISKMFLR 106
Query: 61 GDSVIIVL 68
GDSVIIVL
Sbjct: 107 GDSVIIVL 114
>gi|367028268|ref|XP_003663418.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
gi|347010687|gb|AEO58173.1| hypothetical protein MYCTH_2305356 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N +LL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKMFLR
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNGKKGRPVNKDRFISKMFLR 106
Query: 61 GDSVIIVL 68
GDSVIIVL
Sbjct: 107 GDSVIIVL 114
>gi|237858781|ref|NP_001153822.1| small nuclear ribonucleoprotein D2-like [Acyrthosiphon pisum]
gi|193606141|ref|XP_001943704.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Acyrthosiphon pisum]
gi|54287930|gb|AAV31412.1| putative small nuclear ribonucleoprotein D2-like protein [Toxoptera
citricida]
gi|239790582|dbj|BAH71844.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790584|dbj|BAH71845.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790586|dbj|BAH71846.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790588|dbj|BAH71847.1| ACYPI003451 [Acyrthosiphon pisum]
gi|239790590|dbj|BAH71848.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 67/72 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL R++AFDRHCNMVLENVREMWTELPKTGKGKKKA V++D++ISKMFLR
Sbjct: 44 LINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKAKAVSRDKYISKMFLR 103
Query: 61 GDSVIIVLRNPK 72
GDSVI+V++NPK
Sbjct: 104 GDSVILVVKNPK 115
>gi|403280870|ref|XP_003931930.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 212
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 64/70 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ PVNKDR+ISKMFL
Sbjct: 44 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKSKPVNKDRYISKMFLC 103
Query: 61 GDSVIIVLRN 70
G SVI+VL+N
Sbjct: 104 GGSVIVVLQN 113
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 63/72 (87%), Gaps = 4/72 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+N+ +LLG+V+AFDRH NM+LENV+E+WTE+PK+ KKA PVNKDRFI KMFLR
Sbjct: 52 LINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIPKS----KKARPVNKDRFIPKMFLR 107
Query: 61 GDSVIIVLRNPK 72
GDSV++VL+ P+
Sbjct: 108 GDSVVLVLKAPQ 119
>gi|171685514|ref|XP_001907698.1| hypothetical protein [Podospora anserina S mat+]
gi|170942718|emb|CAP68371.1| unnamed protein product [Podospora anserina S mat+]
Length = 116
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N +LL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKMFLR
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMILENVKEMWTETPV--HNGKKGRPVNKDRFISKMFLR 106
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 107 GDSVILVL 114
>gi|380800505|gb|AFE72128.1| small nuclear ribonucleoprotein Sm D2 isoform 1, partial [Macaca
mulatta]
Length = 89
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 14 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 73
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 74 GDSVIVVLRNP 84
>gi|358053885|dbj|GAB00018.1| hypothetical protein E5Q_06720 [Mixia osmundae IAM 14324]
Length = 111
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 61/70 (87%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++++N +LL RV+AFDRH NMVLENV+EMWTE+PK GK KK PVNKDRFISK+FLR
Sbjct: 44 LVALRNGHKLLARVKAFDRHSNMVLENVKEMWTEIPK-GKNKK---PVNKDRFISKLFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VLR+
Sbjct: 100 GDSVIMVLRS 109
>gi|410909734|ref|XP_003968345.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Takifugu
rubripes]
Length = 124
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 49 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 108
Query: 61 GDSVIIVLRNP 71
GDSVIIVLRNP
Sbjct: 109 GDSVIIVLRNP 119
>gi|229366980|gb|ACQ58470.1| Small nuclear ribonucleoprotein Sm D2 [Anoplopoma fimbria]
Length = 118
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVIIVLRNP
Sbjct: 103 GDSVIIVLRNP 113
>gi|417408038|gb|JAA50593.1| Putative small nuclear ribonucleoprotein snrnp sm core protein,
partial [Desmodus rotundus]
Length = 140
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 65 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 124
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 125 GDSVIVVLRNP 135
>gi|432893287|ref|XP_004075904.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oryzias
latipes]
Length = 118
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|62955141|ref|NP_001017582.1| small nuclear ribonucleoprotein Sm D2 [Danio rerio]
gi|62204867|gb|AAH93003.1| Si:dkey-113g17.2 [Danio rerio]
gi|169145930|emb|CAQ13816.1| novel protein similar to vertebrate small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa (SNRPD2) [Danio rerio]
gi|225706716|gb|ACO09204.1| Small nuclear ribonucleoprotein Sm D2 [Osmerus mordax]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|348508217|ref|XP_003441651.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Oreochromis
niloticus]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|4759158|ref|NP_004588.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]
gi|58037145|ref|NP_081219.1| small nuclear ribonucleoprotein Sm D2 [Mus musculus]
gi|77735903|ref|NP_001029648.1| small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|157820925|ref|NP_001102869.1| small nuclear ribonucleoprotein Sm D2 [Rattus norvegicus]
gi|302191671|ref|NP_001180521.1| small nuclear ribonucleoprotein Sm D2 [Macaca mulatta]
gi|318085119|ref|NP_001187657.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|343887362|ref|NP_001230582.1| small nuclear ribonucleoprotein Sm D2 [Sus scrofa]
gi|356991224|ref|NP_001239341.1| small nuclear ribonucleoprotein Sm D2 [Canis lupus familiaris]
gi|149722210|ref|XP_001502799.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Equus
caballus]
gi|291414848|ref|XP_002723659.1| PREDICTED: small nuclear ribonucleoprotein D2 [Oryctolagus
cuniculus]
gi|296234130|ref|XP_002762293.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|297705196|ref|XP_002829469.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pongo abelii]
gi|301786280|ref|XP_002928550.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Ailuropoda
melanoleuca]
gi|327286749|ref|XP_003228092.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Anolis
carolinensis]
gi|334328787|ref|XP_001365173.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Monodelphis
domestica]
gi|344269659|ref|XP_003406666.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Loxodonta
africana]
gi|348557650|ref|XP_003464632.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
gi|390465430|ref|XP_003733405.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
gi|397493317|ref|XP_003817554.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Pan
paniscus]
gi|397493319|ref|XP_003817555.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Pan
paniscus]
gi|397493321|ref|XP_003817556.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Pan
paniscus]
gi|397493323|ref|XP_003817557.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
paniscus]
gi|397493325|ref|XP_003817558.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Pan
paniscus]
gi|402905973|ref|XP_003915782.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Papio
anubis]
gi|403267451|ref|XP_003925846.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
gi|403299046|ref|XP_003940303.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Saimiri
boliviensis boliviensis]
gi|410054097|ref|XP_003953576.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982696|ref|XP_003997684.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Felis
catus]
gi|426243035|ref|XP_004015372.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Ovis aries]
gi|426389216|ref|XP_004061020.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 1 [Gorilla
gorilla gorilla]
gi|426389218|ref|XP_004061021.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Gorilla
gorilla gorilla]
gi|426389220|ref|XP_004061022.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 3 [Gorilla
gorilla gorilla]
gi|441655899|ref|XP_004091080.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655902|ref|XP_004091081.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|441655911|ref|XP_004091083.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|51338666|sp|P62316.1|SMD2_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|59800293|sp|P62317.1|SMD2_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|109894870|sp|Q3SZF8.1|SMD2_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|6980599|pdb|1B34|B Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734043|pdb|3CW1|C Chain C, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734052|pdb|3CW1|P Chain P, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734061|pdb|3CW1|Q Chain Q, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734070|pdb|3CW1|R Chain R, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583603|pdb|3PGW|Y Chain Y, Crystal Structure Of Human U1 Snrnp
gi|315583612|pdb|3PGW|V Chain V, Crystal Structure Of Human U1 Snrnp
gi|332639435|pdb|2Y9A|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639442|pdb|2Y9A|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639449|pdb|2Y9A|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639459|pdb|2Y9B|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639466|pdb|2Y9B|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639473|pdb|2Y9B|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639483|pdb|2Y9C|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639490|pdb|2Y9C|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639497|pdb|2Y9C|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639507|pdb|2Y9D|C Chain C, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639514|pdb|2Y9D|J Chain J, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639521|pdb|2Y9D|Q Chain Q, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781211|pdb|3S6N|B Chain B, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302197|pdb|4F7U|B Chain B, Macromolecular Machine 6
gi|444302199|pdb|4F7U|D Chain D, Macromolecular Machine 6
gi|453055423|pdb|1VU2|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055431|pdb|1VU2|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055439|pdb|1VU2|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055447|pdb|1VU2|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055455|pdb|1VU2|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055463|pdb|1VU2|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453055475|pdb|1VU2|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|453055479|pdb|1VU3|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453055487|pdb|1VU3|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453055495|pdb|1VU3|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453055503|pdb|1VU3|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453055511|pdb|1VU3|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453055519|pdb|1VU3|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056011|pdb|4F77|J Chain J, The 8s Snrnp Assembly Intermediate
gi|453056019|pdb|4F77|B Chain B, The 8s Snrnp Assembly Intermediate
gi|453056027|pdb|4F77|R Chain R, The 8s Snrnp Assembly Intermediate
gi|453056035|pdb|4F77|Z Chain Z, The 8s Snrnp Assembly Intermediate
gi|453056043|pdb|4F77|HH Chain h, The 8s Snrnp Assembly Intermediate
gi|453056051|pdb|4F77|PP Chain p, The 8s Snrnp Assembly Intermediate
gi|453056063|pdb|4F77|XX Chain x, The 8s Snrnp Assembly Intermediate
gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN [Homo sapiens]
gi|600748|gb|AAC13776.1| Sm D2 [Homo sapiens]
gi|12653431|gb|AAH00486.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12804955|gb|AAH01930.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Homo
sapiens]
gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus musculus]
gi|26353034|dbj|BAC40147.1| unnamed protein product [Mus musculus]
gi|27696661|gb|AAH43014.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|30109280|gb|AAH51208.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|74354236|gb|AAI02878.1| Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Bos taurus]
gi|109734134|gb|AAI16859.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|109734137|gb|AAI16861.1| Small nuclear ribonucleoprotein D2 [Mus musculus]
gi|119577777|gb|EAW57373.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_a [Homo sapiens]
gi|123980686|gb|ABM82172.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|123995513|gb|ABM85358.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [synthetic
construct]
gi|148691165|gb|EDL23112.1| mCG4862 [Mus musculus]
gi|149056801|gb|EDM08232.1| rCG54604 [Rattus norvegicus]
gi|158257256|dbj|BAF84601.1| unnamed protein product [Homo sapiens]
gi|197245986|gb|AAI68781.1| Small nuclear ribonucleoprotein D2 [Rattus norvegicus]
gi|208967434|dbj|BAG73731.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
gi|296477468|tpg|DAA19583.1| TPA: small nuclear ribonucleoprotein Sm D2 [Bos taurus]
gi|308323619|gb|ADO28945.1| small nuclear ribonucleoprotein sm d2 [Ictalurus punctatus]
gi|383412347|gb|AFH29387.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|387018126|gb|AFJ51181.1| Small nuclear ribonucleoprotein Sm D2 [Crotalus adamanteus]
gi|387542088|gb|AFJ71671.1| small nuclear ribonucleoprotein Sm D2 isoform 1 [Macaca mulatta]
gi|410291960|gb|JAA24580.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
gi|410332637|gb|JAA35265.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Pan
troglodytes]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|431909174|gb|ELK12764.1| Small nuclear ribonucleoprotein Sm D2 [Pteropus alecto]
Length = 138
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 63 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 122
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 123 GDSVIVVLRNP 133
>gi|225715792|gb|ACO13742.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|291290931|ref|NP_001167498.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
laevis]
gi|57032687|gb|AAH88924.1| Unknown (protein for MGC:85085) [Xenopus laevis]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|351699571|gb|EHB02490.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
Length = 91
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 56/66 (84%)
Query: 6 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 65
+N +LLG +AFDR CNMVLEN++EMWTE+PK G+GKKK PV KD +ISK+FL GDSVI
Sbjct: 21 HNKKLLGCAKAFDRDCNMVLENMKEMWTEVPKRGQGKKKFKPVRKDHYISKIFLHGDSVI 80
Query: 66 IVLRNP 71
+VL+NP
Sbjct: 81 MVLQNP 86
>gi|345315929|ref|XP_001520002.2| PREDICTED: small nuclear ribonucleoprotein Sm D2-like
[Ornithorhynchus anatinus]
Length = 123
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 48 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 107
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 108 GDSVIVVLRNP 118
>gi|281348790|gb|EFB24374.1| hypothetical protein PANDA_018526 [Ailuropoda melanoleuca]
gi|355703667|gb|EHH30158.1| hypothetical protein EGK_10765, partial [Macaca mulatta]
gi|440902304|gb|ELR53111.1| Small nuclear ribonucleoprotein Sm D2, partial [Bos grunniens
mutus]
Length = 117
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 102 GDSVIVVLRNP 112
>gi|239788764|dbj|BAH71046.1| ACYPI003451 [Acyrthosiphon pisum]
Length = 125
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 66/72 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL R++AFDRHCNMVLENVREMWTELPKTGKGKKKA V++D++ISKMFLR
Sbjct: 44 LINCRNNRKLLARIKAFDRHCNMVLENVREMWTELPKTGKGKKKAKAVSRDKYISKMFLR 103
Query: 61 GDSVIIVLRNPK 72
GDSVI+V+ NPK
Sbjct: 104 GDSVILVVMNPK 115
>gi|109085944|ref|XP_001108236.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|444730749|gb|ELW71123.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 149
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 74 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 133
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 134 GDSVIVVLRNP 144
>gi|52346166|ref|NP_001005128.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|50417589|gb|AAH77664.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
gi|89272067|emb|CAJ81304.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa [Xenopus
(Silurana) tropicalis]
gi|170285025|gb|AAI61312.1| MGC89748 protein [Xenopus (Silurana) tropicalis]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|60834798|gb|AAX37111.1| small nuclear ribonucleoprotein D2 polypeptide [synthetic
construct]
Length = 119
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|26337731|dbj|BAC32551.1| unnamed protein product [Mus musculus]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|225704668|gb|ACO08180.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|225704522|gb|ACO08107.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|225704950|gb|ACO08321.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LVNCRNNKELLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDS+I+VLRNP
Sbjct: 103 GDSIIVVLRNP 113
>gi|209731722|gb|ACI66730.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209733910|gb|ACI67824.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209737798|gb|ACI69768.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|209738154|gb|ACI69946.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|225704008|gb|ACO07850.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|225705510|gb|ACO08601.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
gi|303663493|gb|ADM16106.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 118
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|237649049|ref|NP_808210.2| small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
gi|332257074|ref|XP_003277641.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4
[Nomascus leucogenys]
gi|332257076|ref|XP_003277642.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5
[Nomascus leucogenys]
gi|332856260|ref|XP_001166252.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Pan
troglodytes]
gi|395854166|ref|XP_003799569.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Otolemur
garnettii]
gi|397493327|ref|XP_003817559.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Pan
paniscus]
gi|402905975|ref|XP_003915783.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Papio
anubis]
gi|410054100|ref|XP_003953577.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Pan troglodytes]
gi|410982698|ref|XP_003997685.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 2 [Felis
catus]
gi|426389224|ref|XP_004061024.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 5 [Gorilla
gorilla gorilla]
gi|426389226|ref|XP_004061025.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 6 [Gorilla
gorilla gorilla]
gi|441655907|ref|XP_004091082.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Nomascus
leucogenys]
gi|119577778|gb|EAW57374.1| small nuclear ribonucleoprotein D2 polypeptide 16.5kDa, isoform
CRA_b [Homo sapiens]
gi|351697916|gb|EHB00835.1| Small nuclear ribonucleoprotein Sm D2 [Heterocephalus glaber]
gi|432101631|gb|ELK29680.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 108
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 33 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 92
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 93 GDSVIVVLRNP 103
>gi|209738048|gb|ACI69893.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221220052|gb|ACM08687.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|221221714|gb|ACM09518.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
gi|303664033|gb|ADM16126.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|354486715|ref|XP_003505524.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cricetulus
griseus]
Length = 139
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 63/70 (90%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ P+NK +ISKMFL
Sbjct: 64 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKGKKKSKPINKGHYISKMFLS 123
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 124 GDSVIVVLRN 133
>gi|225705318|gb|ACO08505.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 111
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 33 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 92
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 93 GDSVIVVLRNP 103
>gi|344249248|gb|EGW05352.1| Small nuclear ribonucleoprotein Sm D2 [Cricetulus griseus]
Length = 108
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 63/70 (90%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+ KGKKK+ P+NK +ISKMFL
Sbjct: 33 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSDKGKKKSKPINKGHYISKMFLS 92
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 93 GDSVIVVLRN 102
>gi|221221306|gb|ACM09314.1| Small nuclear ribonucleoprotein Sm D2 [Salmo salar]
Length = 121
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|308322523|gb|ADO28399.1| small nuclear ribonucleoprotein sm d2 [Ictalurus furcatus]
Length = 123
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 48 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 107
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 108 GDSVIVVLRNP 118
>gi|340368003|ref|XP_003382542.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Amphimedon queenslandica]
Length = 119
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 65/71 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRH NMVLENV+EMWTE PKTGKGKKKA PVNKDRFI+KMF+R
Sbjct: 42 LINCRNNRKLLARVKAFDRHFNMVLENVKEMWTETPKTGKGKKKARPVNKDRFIAKMFIR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 102 GDSVILVLRNP 112
>gi|426389222|ref|XP_004061023.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 isoform 4 [Gorilla
gorilla gorilla]
Length = 136
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 61 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 120
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 121 GDSVIVVLRNP 131
>gi|225703700|gb|ACO07696.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR++SKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYVSKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|17558868|ref|NP_506004.1| Protein SNR-4 [Caenorhabditis elegans]
gi|2833296|sp|Q18786.1|SMD2_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D2;
Short=Sm-D2; AltName: Full=snRNP core protein D2
gi|3875190|emb|CAB01413.1| Protein SNR-4 [Caenorhabditis elegans]
Length = 118
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+V++NP
Sbjct: 103 GDSVILVVKNP 113
>gi|392576339|gb|EIW69470.1| hypothetical protein TREMEDRAFT_30560, partial [Tremella
mesenterica DSM 1558]
Length = 117
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 60/70 (85%), Gaps = 5/70 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL RV+AFDRH NMVLENV+EMWTE PK GKGKK +NKDRFISK+FLR
Sbjct: 43 LISLRNNKKLLARVKAFDRHANMVLENVKEMWTETPK-GKGKK---TINKDRFISKLFLR 98
Query: 61 GDSVII-VLR 69
GDSVI+ VLR
Sbjct: 99 GDSVILGVLR 108
>gi|225704396|gb|ACO08044.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR++SKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYVSKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|312078721|ref|XP_003141861.1| small Nuclear Ribonucleoprotein family member [Loa loa]
gi|307762971|gb|EFO22205.1| small nuclear ribonucleoprotein Sm D2 [Loa loa]
Length = 121
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFI+KMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFITKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVIIVL+NP
Sbjct: 103 GDSVIIVLKNP 113
>gi|308503579|ref|XP_003113973.1| CRE-SNR-4 protein [Caenorhabditis remanei]
gi|308261358|gb|EFP05311.1| CRE-SNR-4 protein [Caenorhabditis remanei]
Length = 118
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+V++NP
Sbjct: 103 GDSVILVVKNP 113
>gi|341904454|gb|EGT60287.1| CBN-SNR-4 protein [Caenorhabditis brenneri]
Length = 118
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+V++NP
Sbjct: 103 GDSVILVVKNP 113
>gi|324546471|gb|ADY49713.1| Small nuclear ribonucleoprotein Sm D2, partial [Ascaris suum]
Length = 120
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFISKMFLR
Sbjct: 43 MINCRNNRKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+NP
Sbjct: 103 GDSVILVLKNP 113
>gi|395529567|ref|XP_003766882.1| PREDICTED: uncharacterized protein LOC100930002 [Sarcophilus
harrisii]
Length = 242
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKD +ISKMFLR
Sbjct: 167 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDHYISKMFLR 226
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 227 GDSVIVVLRNP 237
>gi|225709580|gb|ACO10636.1| Small nuclear ribonucleoprotein Sm D2 [Caligus rogercresseyi]
Length = 121
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVN+DR+ISKMFLR
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNRDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|213405485|ref|XP_002173514.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
gi|212001561|gb|EEB07221.1| small nuclear ribonucleoprotein Sm D2 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRH NMVLENV+EMWTE KT G KK P+N+DRFISKMFLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHSNMVLENVKEMWTERRKTSSG-KKGKPINRDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GD V++V+R P
Sbjct: 103 GDGVVLVVRIP 113
>gi|170594601|ref|XP_001902052.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain. [Brugia malayi]
gi|158590996|gb|EDP29611.1| Chain B, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain., putative [Brugia malayi]
Length = 121
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFI+KMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFITKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVII+L+NP
Sbjct: 103 GDSVIIILKNP 113
>gi|268557296|ref|XP_002636637.1| C. briggsae CBR-SNR-4 protein [Caenorhabditis briggsae]
Length = 118
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+V++NP
Sbjct: 103 GDSVILVVKNP 113
>gi|402587026|gb|EJW80962.1| small nuclear ribonucleoprotein Sm D2 [Wuchereria bancrofti]
Length = 111
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTELPKTGKGKKKA PV KDRFI+KMFLR
Sbjct: 33 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPKTGKGKKKAKPVAKDRFITKMFLR 92
Query: 61 GDSVIIVLRNP 71
GDSVII+L+NP
Sbjct: 93 GDSVIIILKNP 103
>gi|148692587|gb|EDL24534.1| mCG49049 [Mus musculus]
Length = 118
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GD VI+VLRNP
Sbjct: 103 GDLVIVVLRNP 113
>gi|225714876|gb|ACO13284.1| Small nuclear ribonucleoprotein Sm D2 [Esox lucius]
Length = 121
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AF RHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFGRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|441600622|ref|XP_004087625.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Nomascus leucogenys]
gi|441600625|ref|XP_004087626.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Nomascus leucogenys]
Length = 118
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLG V+AF+RHCNMVLEN++EMWTE+PK+ KGKKK+ PVNKD
Sbjct: 35 SVKNNTQVLINCRSSKKLLGHVKAFERHCNMVLENMKEMWTEVPKSSKGKKKSKPVNKDC 94
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISKMFL GD VI+VLRNP
Sbjct: 95 YISKMFLHGDLVIVVLRNP 113
>gi|296204251|ref|XP_002749249.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGR +AFDRHCNMVLEN++EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRAKAFDRHCNMVLENMKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|296213417|ref|XP_002753261.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Callithrix
jacchus]
Length = 118
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 67/70 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRN 70
GDSVI+VLRN
Sbjct: 103 GDSVIVVLRN 112
>gi|118388573|ref|XP_001027383.1| Sm protein [Tetrahymena thermophila]
gi|89309153|gb|EAS07141.1| Sm protein [Tetrahymena thermophila SB210]
Length = 103
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 61/72 (84%), Gaps = 1/72 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++++NN ++L +VRAFDRH NMVLENV EMWTE+P+ G KK+ P+ K+R+I+K+FLR
Sbjct: 32 LIALRNNRKMLAKVRAFDRHMNMVLENVLEMWTEVPRGSHG-KKSKPMKKERYITKLFLR 90
Query: 61 GDSVIIVLRNPK 72
GDSVI VL+NP+
Sbjct: 91 GDSVIFVLKNPQ 102
>gi|399217363|emb|CCF74250.1| unnamed protein product [Babesia microti strain RI]
Length = 103
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 60/72 (83%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++L RV+AFDRHCNM+L + REMWT + +G GK+K VNKDRFISKMFLR
Sbjct: 35 LINCRNNRKILARVKAFDRHCNMILVDAREMWT-VKSSGGGKQKF--VNKDRFISKMFLR 91
Query: 61 GDSVIIVLRNPK 72
GDSVI+VLRNPK
Sbjct: 92 GDSVIVVLRNPK 103
>gi|340501173|gb|EGR27984.1| small nuclear ribonucleoprotein sm d2, putative [Ichthyophthirius
multifiliis]
Length = 103
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 59/71 (83%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++++NN ++L RVRAFDRH NMVLENV EMWTE+P+ G +K+ P+ K+R+ SKMFLR
Sbjct: 32 LIALRNNRKILARVRAFDRHMNMVLENVLEMWTEVPRGSHG-QKSKPMRKERYHSKMFLR 90
Query: 61 GDSVIIVLRNP 71
GDSVI VLRNP
Sbjct: 91 GDSVIFVLRNP 101
>gi|225704758|gb|ACO08225.1| Small nuclear ribonucleoprotein Sm D2 [Oncorhynchus mykiss]
Length = 118
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR++SKMF R
Sbjct: 43 LVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYVSKMFQR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|403288352|ref|XP_003935370.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403288354|ref|XP_003935371.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 145
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AF+RHCNMVLENV+E WTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFNRHCNMVLENVKETWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GDSVI+VLRNP
Sbjct: 103 GDSVIVVLRNP 113
>gi|302695697|ref|XP_003037527.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
gi|300111224|gb|EFJ02625.1| hypothetical protein SCHCODRAFT_13757 [Schizophyllum commune H4-8]
Length = 127
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 62/86 (72%), Gaps = 20/86 (23%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE----------------MWTELPKTGKGKKK 44
++S++N+ +LL RV+AFDRH NMVLENV+E MWTE+PK GK KK
Sbjct: 44 LISLRNDKKLLARVKAFDRHSNMVLENVKEARQFTFSLPLNAYTQQMWTEIPK-GKNKK- 101
Query: 45 ALPVNKDRFISKMFLRGDSVIIVLRN 70
PVNKDRFISKMFLRGDSVI++LRN
Sbjct: 102 --PVNKDRFISKMFLRGDSVILILRN 125
>gi|19115418|ref|NP_594506.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe 972h-]
gi|12230558|sp|O14036.1|SMD2_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=Complexed with cdc5 protein 9; AltName:
Full=snRNP core protein D2
gi|2414614|emb|CAB16363.1| Sm snRNP core protein Smd2 [Schizosaccharomyces pombe]
Length = 115
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMFLR
Sbjct: 44 LINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLR 102
Query: 61 GDSVIIVLRNP 71
GD V++V+R P
Sbjct: 103 GDGVVLVVRIP 113
>gi|109131908|ref|XP_001099573.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 67/71 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
DSVI+VLRNP
Sbjct: 103 RDSVIVVLRNP 113
>gi|109510075|ref|XP_001054247.1| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
gi|109512989|ref|XP_214847.2| PREDICTED: small nuclear ribonucleoprotein Sm D2 [Rattus
norvegicus]
Length = 118
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 68/71 (95%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+E+WTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRNP 71
G+SVI+VLRNP
Sbjct: 103 GNSVIVVLRNP 113
>gi|189208117|ref|XP_001940392.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330933723|ref|XP_003304270.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|187976485|gb|EDU43111.1| small nuclear ribonucleoprotein Sm D2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311319198|gb|EFQ87625.1| hypothetical protein PTT_16802 [Pyrenophora teres f. teres 0-1]
gi|451847200|gb|EMD60508.1| hypothetical protein COCSADRAFT_163837 [Cochliobolus sativus
ND90Pr]
gi|451997866|gb|EMD90331.1| hypothetical protein COCHEDRAFT_1157376 [Cochliobolus
heterostrophus C5]
Length = 117
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN ++L RV+AFDRHCNMVLEN +EMWTE P+ G VNKDRFISK+FLR
Sbjct: 49 LISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLANG-SYGRKVNKDRFISKLFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|169844304|ref|XP_001828873.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
gi|116509985|gb|EAU92880.1| pre-mRNA splicing factor [Coprinopsis cinerea okayama7#130]
Length = 130
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 61/89 (68%), Gaps = 23/89 (25%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-------------------MWTELPKTGKG 41
++S++NN +LL RV+AFDRH NMVLENV+E MWTE PK GK
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEERPSPFTTIQEPRLMVNSQMWTETPK-GKN 102
Query: 42 KKKALPVNKDRFISKMFLRGDSVIIVLRN 70
KK PVNKDRFISKMFLRGDSVI+VLRN
Sbjct: 103 KK---PVNKDRFISKMFLRGDSVILVLRN 128
>gi|378726124|gb|EHY52583.1| small nuclear ribonucleoprotein Sm D2 [Exophiala dermatitidis
NIH/UT8656]
Length = 100
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%), Gaps = 5/68 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K K + VNKDRFISKMFLR
Sbjct: 36 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE-----KTKGNSKGVNKDRFISKMFLR 90
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 91 GDSVILVL 98
>gi|396486327|ref|XP_003842389.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
gi|312218965|emb|CBX98910.1| similar to small nuclear ribonucleoprotein sm d2 [Leptosphaeria
maculans JN3]
Length = 117
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN ++L RV+AFDRHCNMVLEN +EMWTE P+ G VNKDRFISK+FLR
Sbjct: 49 LISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLSNG-SMGRKVNKDRFISKLFLR 107
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 108 GDSVILVL 115
>gi|432102126|gb|ELK29935.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 109
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 11/80 (13%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLGRV+AFD H NMVLENV E+ TE+PK+ KG+KK+ PV+KDR
Sbjct: 25 SVKNNTQVLINYRKNKNLLGRVKAFDGHYNMVLENVEELGTEVPKSDKGRKKSKPVHKDR 84
Query: 53 FISKMFLR-GDSVIIVLRNP 71
+IS MF R GDSVI+ LR+P
Sbjct: 85 YISAMFPRAGDSVIVGLRHP 104
>gi|355763191|gb|EHH62129.1| hypothetical protein EGM_20337, partial [Macaca fascicularis]
Length = 117
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 66/71 (92%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKD +ISKMFLR
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDHYISKMFLR 101
Query: 61 GDSVIIVLRNP 71
DSVI+VLRNP
Sbjct: 102 RDSVIVVLRNP 112
>gi|412990385|emb|CCO19703.1| Small nuclear ribonucleoprotein Sm D2 [Bathycoccus prasinos]
Length = 97
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 60/72 (83%), Gaps = 2/72 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRH N++LENV+E+WT+ + + + K P NKDRFISK+FLR
Sbjct: 28 LINCRNNRKLLGRVKAFDRHLNLLLENVKEVWTD--RNSQKESKTPPSNKDRFISKLFLR 85
Query: 61 GDSVIIVLRNPK 72
GDS+I+VL+NPK
Sbjct: 86 GDSIILVLKNPK 97
>gi|444724875|gb|ELW65462.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 117
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/79 (67%), Positives = 60/79 (75%), Gaps = 11/79 (13%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+ KK+ PVNKDR
Sbjct: 35 SVKNNTQVLINCCNNKKLLGRVKAFDRHCNMVLENVKEMWTEV-PKSGKGKKSKPVNKDR 93
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISKMFLRGD VI+VL+NP
Sbjct: 94 YISKMFLRGDLVIVVLQNP 112
>gi|109122268|ref|XP_001083377.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
Length = 118
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 66/70 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLR
Sbjct: 43 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR 102
Query: 61 GDSVIIVLRN 70
DSV++VLRN
Sbjct: 103 QDSVVLVLRN 112
>gi|126137433|ref|XP_001385240.1| hypothetical protein PICST_60825 [Scheffersomyces stipitis CBS
6054]
gi|126092462|gb|ABN67211.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 112
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G+VRAFDRHCN++LENV+E+WTE K KGK ++++RFISK+FLR
Sbjct: 44 VISCRNNHKLIGKVRAFDRHCNLILENVKELWTETSKNNKGKATK-SISRERFISKLFLR 102
Query: 61 GDSVIIVLR 69
GDS++I+L+
Sbjct: 103 GDSIVIILK 111
>gi|315042035|ref|XP_003170394.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
gi|311345428|gb|EFR04631.1| hypothetical protein MGYG_07638 [Arthroderma gypseum CBS 118893]
Length = 135
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKMFLR
Sbjct: 70 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFISKMFLR 125
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 126 GDSVILVL 133
>gi|50555361|ref|XP_505089.1| YALI0F06644p [Yarrowia lipolytica]
gi|49650959|emb|CAG77896.1| YALI0F06644p [Yarrowia lipolytica CLIB122]
Length = 115
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRH NMVLENV+EMWTE KT G K V KDRFISKMFLR
Sbjct: 47 LISCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKTKTASG-KPGKTVTKDRFISKMFLR 105
Query: 61 GDSVIIVL 68
GD+VI+V+
Sbjct: 106 GDTVILVV 113
>gi|67624703|ref|XP_668634.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|126649020|ref|XP_001388072.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|54659846|gb|EAL38408.1| small nuclear ribonucleoprotein [Cryptosporidium hominis]
gi|126117160|gb|EAZ51260.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 106
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 60/71 (84%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++LGRV+AFDRHCN++L + RE+WTE K+GK K A +NKDRFISK+F+R
Sbjct: 36 LVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGK-KGSAKYINKDRFISKLFVR 94
Query: 61 GDSVIIVLRNP 71
GDSVI++L++P
Sbjct: 95 GDSVILILKSP 105
>gi|349803317|gb|AEQ17131.1| putative small nuclear ribonucleoprotein sm d2 [Pipa carvalhoi]
Length = 116
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 66/77 (85%), Gaps = 8/77 (10%)
Query: 3 SVKNNTQLLGR--------VRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFI 54
SVKNNTQ+L V+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+I
Sbjct: 35 SVKNNTQVLINCRNNKKLLVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYI 94
Query: 55 SKMFLRGDSVIIVLRNP 71
SKMFLRGDSVI+VLRNP
Sbjct: 95 SKMFLRGDSVIVVLRNP 111
>gi|209877963|ref|XP_002140423.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556029|gb|EEA06074.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 111
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALP---VNKDRFISKM 57
+++ +NN ++LGRV+AFDRHCN++L +VRE+WTE KT +KK +NKDRFISK+
Sbjct: 37 LVNCRNNRKILGRVKAFDRHCNLLLTDVREIWTEAVKTNSSQKKKSSNRFINKDRFISKL 96
Query: 58 FLRGDSVIIVLRNP 71
F+RGDSVI++L++P
Sbjct: 97 FVRGDSVILILKSP 110
>gi|296809754|ref|XP_002845215.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|327292564|ref|XP_003230980.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
gi|238842603|gb|EEQ32265.1| small nuclear ribonucleoprotein Sm D2 [Arthroderma otae CBS 113480]
gi|326466786|gb|EGD92239.1| small nuclear ribonucleoprotein SmD2 [Trichophyton rubrum CBS
118892]
Length = 114
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFISKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|344302812|gb|EGW33086.1| hypothetical protein SPAPADRAFT_60395 [Spathaspora passalidarum
NRRL Y-27907]
Length = 112
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 59/70 (84%), Gaps = 3/70 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK-KALPVNKDRFISKMFL 59
++S +NN +L+ +V+AFDRHCN+VLENV+E+WTE K KGKK K+ P K+RF+SKMFL
Sbjct: 44 VISCRNNHKLIAKVKAFDRHCNLVLENVKELWTETVKNNKGKKIKSTP--KERFVSKMFL 101
Query: 60 RGDSVIIVLR 69
RGDSVII+++
Sbjct: 102 RGDSVIIIVK 111
>gi|156083176|ref|XP_001609072.1| small nuclear ribonucleoprotein [Babesia bovis T2Bo]
gi|154796322|gb|EDO05504.1| small nuclear ribonucleoprotein, putative [Babesia bovis]
Length = 162
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 60/72 (83%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ ++N +LLGRV+AFDRH NM+L +VREMWTE+ G GKKK + NKDR+IS++FLR
Sbjct: 94 LINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEV-SGGGGKKKYM--NKDRYISRLFLR 150
Query: 61 GDSVIIVLRNPK 72
GDSV++VL NPK
Sbjct: 151 GDSVVVVLSNPK 162
>gi|325091149|gb|EGC44459.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus H88]
Length = 187
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 122 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 177
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 178 GDSVILVL 185
>gi|258567138|ref|XP_002584313.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
gi|237905759|gb|EEP80160.1| small nuclear ribonucleoprotein Sm D2 [Uncinocarpus reesii 1704]
Length = 114
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|255718831|ref|XP_002555696.1| KLTH0G15246p [Lachancea thermotolerans]
gi|238937080|emb|CAR25259.1| KLTH0G15246p [Lachancea thermotolerans CBS 6340]
Length = 108
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K KK VN++RFISK+FLR
Sbjct: 44 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-----KQNKKT--VNRERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDS+IIVLR P
Sbjct: 97 GDSIIIVLRAP 107
>gi|300175427|emb|CBK20738.2| unnamed protein product [Blastocystis hominis]
Length = 457
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 62/71 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LL V+AFDRHCNMVLENV+E+WTE+PK+GKGKKKA + KDRFI K+FLR
Sbjct: 383 LINVRNNHKLLCHVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKAKAITKDRFIPKLFLR 442
Query: 61 GDSVIIVLRNP 71
GDSV++V NP
Sbjct: 443 GDSVVVVCSNP 453
>gi|226295357|gb|EEH50777.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb18]
Length = 114
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|295670567|ref|XP_002795831.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225677515|gb|EEH15799.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides
brasiliensis Pb03]
gi|226284916|gb|EEH40482.1| small nuclear ribonucleoprotein Sm D2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 114
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|261189633|ref|XP_002621227.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|225561709|gb|EEH09989.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus
G186AR]
gi|239591463|gb|EEQ74044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
SLH14081]
gi|239613006|gb|EEQ89993.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ER-3]
gi|240275314|gb|EER38828.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 114
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|154283173|ref|XP_001542382.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
gi|150410562|gb|EDN05950.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces capsulatus NAm1]
Length = 103
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 38 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 93
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 94 GDSVILVL 101
>gi|397621815|gb|EJK66477.1| hypothetical protein THAOC_12605 [Thalassiosira oceanica]
Length = 112
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 62/71 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++V+NN +LLGRV+A+DRH N++LE+V+EMWTE K GKGKK+ VNKDR++SKMFLR
Sbjct: 34 LVNVRNNHKLLGRVKAYDRHMNLLLEDVKEMWTEQSKGGKGKKRGTSVNKDRYVSKMFLR 93
Query: 61 GDSVIIVLRNP 71
GDSVI+V+ NP
Sbjct: 94 GDSVILVVSNP 104
>gi|119174655|ref|XP_001239674.1| hypothetical protein CIMG_09295 [Coccidioides immitis RS]
gi|392869868|gb|EAS28397.2| small nuclear ribonucleoprotein Sm D2 [Coccidioides immitis RS]
Length = 114
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKMFLR
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMFLR 104
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 105 GDSVILVL 112
>gi|146421306|ref|XP_001486603.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
gi|146390018|gb|EDK38176.1| hypothetical protein PGUG_02274 [Meyerozyma guilliermondii ATCC
6260]
Length = 112
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +++ RV+AFDRHCNMVLENV+E+WTE K GKG K V+K+RF+SK+FLR
Sbjct: 44 VISCRNNHKMVARVKAFDRHCNMVLENVKELWTESVKNGKG-KVVNSVSKERFVSKLFLR 102
Query: 61 GDSVIIVLR 69
GDSV+IV++
Sbjct: 103 GDSVVIVVK 111
>gi|50423747|ref|XP_460458.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
gi|49656127|emb|CAG88765.1| DEHA2F02156p [Debaryomyces hansenii CBS767]
Length = 115
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+ +V+AFDRHCN++LENV+E+WTE K KG KK +K+RF+SKMFLR
Sbjct: 44 VISCRNNHKLIAKVKAFDRHCNLILENVKELWTESVKNNKG-KKIKSTSKERFVSKMFLR 102
Query: 61 GDSVIIVLR 69
GDSV+IVL+
Sbjct: 103 GDSVVIVLK 111
>gi|448118540|ref|XP_004203524.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|448120946|ref|XP_004204107.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384392|emb|CCE79096.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
gi|359384975|emb|CCE78510.1| Piso0_001135 [Millerozyma farinosa CBS 7064]
Length = 113
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+ RV+AFDRHCN++LENV+E+WTE + KG +K ++K+RF+SKMFLR
Sbjct: 44 VVSCRNNHKLVARVKAFDRHCNLILENVKELWTESVRNNKG-QKVNSISKERFVSKMFLR 102
Query: 61 GDSVIIVLR 69
GDSVIIVL+
Sbjct: 103 GDSVIIVLK 111
>gi|50787671|emb|CAH04406.1| small nuclear riboprotein Sm D2 [Euplotes vannus]
Length = 113
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL R +AFDRH NMVLENV EMWTE+PK KGKK PVNK+RFI K+FLR
Sbjct: 43 LVNCRNNRKLLARCKAFDRHMNMVLENVCEMWTEMPKKQKGKKTK-PVNKERFIHKLFLR 101
Query: 61 GDSVIIVLRNPK 72
GDSVI+V++NPK
Sbjct: 102 GDSVILVIKNPK 113
>gi|403216466|emb|CCK70963.1| hypothetical protein KNAG_0F03010 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 56/71 (78%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE KK NK+RFISK+FLR
Sbjct: 45 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKHNKTTNKERFISKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDSVII+L+ P
Sbjct: 98 GDSVIIILKAP 108
>gi|71031308|ref|XP_765296.1| small nuclear ribonucleoprotein D2 [Theileria parva strain Muguga]
gi|68352252|gb|EAN33013.1| small nuclear ribonucleoprotein D2, putative [Theileria parva]
Length = 106
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++L RV+AFDRHCNM+L NVREMWT K G GKKK KDRF+S++FLR
Sbjct: 38 LINCRNNRKILARVKAFDRHCNMILTNVREMWTVRGK-GTGKKKL--ETKDRFLSRLFLR 94
Query: 61 GDSVIIVLRNPK 72
GDSVI+VL+NPK
Sbjct: 95 GDSVIVVLKNPK 106
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 59/71 (83%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNM+LENV+E+WTE KGK+ VNK+RFISK+FLR
Sbjct: 45 IISLRNNHKIIARVKAFDRHCNMILENVKELWTE----KKGKR---VVNKERFISKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDSVI++L+ P
Sbjct: 98 GDSVIVILKAP 108
>gi|448517223|ref|XP_003867742.1| Smd2 core Sm protein [Candida orthopsilosis Co 90-125]
gi|380352081|emb|CCG22305.1| Smd2 core Sm protein [Candida orthopsilosis]
Length = 111
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 58/69 (84%), Gaps = 2/69 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G++RAFDRHCN+VLENV+E+WTE K + K+ V+++RFISKMFLR
Sbjct: 44 IISCRNNHKLVGKIRAFDRHCNLVLENVKELWTETVKNEFNQTKS--VSRERFISKMFLR 101
Query: 61 GDSVIIVLR 69
GDSVII+L+
Sbjct: 102 GDSVIIILK 110
>gi|410074971|ref|XP_003955068.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
gi|372461650|emb|CCF55933.1| hypothetical protein KAFR_0A04970 [Kazachstania africana CBS 2517]
Length = 114
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK VN++RFISK+FLR
Sbjct: 49 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKS-----LVNRERFISKLFLR 101
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+ P
Sbjct: 102 GDSVIVVLKAP 112
>gi|148709180|gb|EDL41126.1| mCG49198 [Mus musculus]
Length = 118
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 65/79 (82%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNK+
Sbjct: 35 SVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKNC 94
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISKMFL GDS I+VLRNP
Sbjct: 95 YISKMFLHGDSFIVVLRNP 113
>gi|346325342|gb|EGX94939.1| small nuclear ribonucleoprotein Sm D2 [Cordyceps militaris CM01]
Length = 145
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 59
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM++
Sbjct: 74 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKMYV 131
>gi|367005899|ref|XP_003687681.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
gi|357525986|emb|CCE65247.1| hypothetical protein TPHA_0K01130 [Tetrapisispora phaffii CBS 4417]
Length = 109
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFD+HCNMVLENV+E+WTE K K K +NK+RFISK+FLR
Sbjct: 44 IISLRNNHKIIARVKAFDKHCNMVLENVKELWTE-----KNKDKV--INKERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVIIVL+ P
Sbjct: 97 GDSVIIVLKAP 107
>gi|392297783|gb|EIW08882.1| Smd2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 80
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FLR
Sbjct: 15 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFLR 67
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+ P
Sbjct: 68 GDSVIVVLKTP 78
>gi|6323305|ref|NP_013377.1| Smd2p [Saccharomyces cerevisiae S288c]
gi|6226704|sp|Q06217.2|SMD2_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D2; Short=Sm-D2;
AltName: Full=snRNP core protein D2
gi|2340971|gb|AAB67368.1| Ylr275wp [Saccharomyces cerevisiae]
gi|151940982|gb|EDN59363.1| Sm D2 [Saccharomyces cerevisiae YJM789]
gi|190405334|gb|EDV08601.1| small nuclear ribonucleoprotein Sm D2 [Saccharomyces cerevisiae
RM11-1a]
gi|259148258|emb|CAY81505.1| Smd2p [Saccharomyces cerevisiae EC1118]
gi|285813692|tpg|DAA09588.1| TPA: Smd2p [Saccharomyces cerevisiae S288c]
gi|349579983|dbj|GAA25144.1| K7_Smd2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 110
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK +N++RFISK+FLR
Sbjct: 45 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKN-----VINRERFISKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+ P
Sbjct: 98 GDSVIVVLKTP 108
>gi|50287515|ref|XP_446187.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525494|emb|CAG59111.1| unnamed protein product [Candida glabrata]
Length = 110
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 57/71 (80%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +L+ RV+AFDRHCN+VLENV+E+WTE KK +N++RFISK+FLR
Sbjct: 45 IISLRNNHKLIARVKAFDRHCNLVLENVKELWTE-------KKNKQTINRERFISKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDSVI++L+ P
Sbjct: 98 GDSVIVILKAP 108
>gi|84994530|ref|XP_951987.1| small nuclear ribonucleoprotein [Theileria annulata strain Ankara]
gi|65302148|emb|CAI74255.1| small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 106
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++L RV+AFDRHCNM+L +VREMWT K G GKKK KDRFI+++FLR
Sbjct: 38 LINCRNNRKILARVKAFDRHCNMILTDVREMWTVRGK-GTGKKKL--ETKDRFITRLFLR 94
Query: 61 GDSVIIVLRNPK 72
GDSVI+VL+NPK
Sbjct: 95 GDSVIVVLKNPK 106
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE K GK VN++RFISK+FLR
Sbjct: 45 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGKS-----TVNRERFISKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDSVI++++ P
Sbjct: 98 GDSVIVIVKAP 108
>gi|156840670|ref|XP_001643714.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156114337|gb|EDO15856.1| hypothetical protein Kpol_1009p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 109
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE KG K +NK+RFISK+FLR
Sbjct: 44 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KKGNKT---INKERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDS+I++L+ P
Sbjct: 97 GDSIIVILKAP 107
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 59/71 (83%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE KGK+ +N++RFISK+FLR
Sbjct: 45 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KKGKQ---IINRERFISKLFLR 97
Query: 61 GDSVIIVLRNP 71
GDS+I++L+ P
Sbjct: 98 GDSIIVILKAP 108
>gi|354543718|emb|CCE40440.1| hypothetical protein CPAR2_104760 [Candida parapsilosis]
Length = 111
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 58/69 (84%), Gaps = 2/69 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G++RAFDRHCN+VLENV+E+WTE K + K+ V+++RFISK+FLR
Sbjct: 44 IISCRNNHKLVGKIRAFDRHCNLVLENVKELWTETVKNEFNQTKS--VSRERFISKLFLR 101
Query: 61 GDSVIIVLR 69
GDSVII+L+
Sbjct: 102 GDSVIIILK 110
>gi|444705722|gb|ELW47114.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 118
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/79 (70%), Positives = 63/79 (79%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLGRV+AFDRHCNM LEN++EMWTE PK+GKGKKK+ PVNKD
Sbjct: 35 SVKNNTQVLINCCNNKKLLGRVKAFDRHCNMALENMKEMWTEDPKSGKGKKKSKPVNKDG 94
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISKMFL GDSVI+VL NP
Sbjct: 95 YISKMFLHGDSVIVVLWNP 113
>gi|149245030|ref|XP_001527049.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146449443|gb|EDK43699.1| small nuclear ribonucleoprotein Sm D2 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 110
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 58/69 (84%), Gaps = 3/69 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G+VRAFDRHCN+VLENV+E+WTE T GK K +P ++RFISKMFLR
Sbjct: 44 VISCRNNHKLVGKVRAFDRHCNLVLENVKELWTE-KVTEFGKTKNVP--RERFISKMFLR 100
Query: 61 GDSVIIVLR 69
GDSVIIV++
Sbjct: 101 GDSVIIVVK 109
>gi|169779295|ref|XP_001824112.1| small nuclear ribonucleoprotein Sm D2 [Aspergillus oryzae RIB40]
gi|238499931|ref|XP_002381200.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|83772851|dbj|BAE62979.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692953|gb|EED49299.1| small nuclear ribonucleoprotein SmD2, putative [Aspergillus flavus
NRRL3357]
gi|391873159|gb|EIT82233.1| small nuclear ribonucleoprotein (snRNP) Sm core protein
[Aspergillus oryzae 3.042]
Length = 115
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 53/68 (77%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ ++N +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKMFLR
Sbjct: 50 LIACRSNRRLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFISKMFLR 105
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 106 GDSVILVL 113
>gi|212529808|ref|XP_002145061.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074459|gb|EEA28546.1| small nuclear ribonucleoprotein SmD2, putative [Talaromyces
marneffei ATCC 18224]
Length = 117
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 53/67 (79%), Gaps = 4/67 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE PK GKG+ VNKDRFISKM+
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTEKPKGGKGRG----VNKDRFISKMYTS 104
Query: 61 GDSVIIV 67
S++I+
Sbjct: 105 PASLLII 111
>gi|348572834|ref|XP_003472197.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cavia
porcellus]
Length = 117
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 57/71 (80%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +NN +LLG V+AFDRHCNMVLENV+EMWTE+ KK+ PVNKD +ISKMFL
Sbjct: 43 LIDCRNNKKLLGLVKAFDRHCNMVLENVKEMWTEV-PKSGKGKKSKPVNKDCYISKMFLH 101
Query: 61 GDSVIIVLRNP 71
G+SVI+VLRNP
Sbjct: 102 GESVIMVLRNP 112
>gi|367016959|ref|XP_003682978.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
gi|359750641|emb|CCE93767.1| hypothetical protein TDEL_0G04000 [Torulaspora delbrueckii]
Length = 109
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 57/71 (80%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFDRHCNMVLENV+E+WTE +G K NK+RFISK+FLR
Sbjct: 44 IISLRNNHKIIARVKAFDRHCNMVLENVKELWTE----KRGNKAE---NKERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+ P
Sbjct: 97 GDSVIVVLKAP 107
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ R+++FDRHCNMVLENV+E+WTE +GKK NK+RFISK+FLR
Sbjct: 44 IISLRNNHKIIARIKSFDRHCNMVLENVKELWTE----KEGKKLT---NKERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+ P
Sbjct: 97 GDSVIVVLKAP 107
>gi|322696181|gb|EFY87977.1| small nuclear ribonucleoprotein Sm D2 [Metarhizium acridum CQMa
102]
Length = 120
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 57
++S++NN +LL RV+AFDRHCNMVLENV+EMWTE P+ G KK PVNKDRFISKM
Sbjct: 65 LISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLADG-KKGRPVNKDRFISKM 120
>gi|432118204|gb|ELK38063.1| Small nuclear ribonucleoprotein Sm D2 [Myotis davidii]
Length = 118
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 60/71 (84%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLG V+AFDRHCNMVLENV+EMWT +PK+GK K+K+ VNKD +ISKMFL
Sbjct: 43 LINCRNNKKLLGWVKAFDRHCNMVLENVKEMWTGVPKSGKSKEKSKTVNKDFYISKMFLH 102
Query: 61 GDSVIIVLRNP 71
D VI+V+RNP
Sbjct: 103 RDLVIVVMRNP 113
>gi|444721759|gb|ELW62473.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 135
Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 53/68 (77%), Gaps = 10/68 (14%)
Query: 1 MMSVKNNTQLL---------GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD 51
M SVKNNTQ+L G ++AFDRHC+MVLENV+EMWTE+PK+ KG KK+ PVNKD
Sbjct: 33 MQSVKNNTQVLIHCHNKKVMGHMKAFDRHCDMVLENVKEMWTEVPKSRKG-KKSKPVNKD 91
Query: 52 RFISKMFL 59
+ISKMFL
Sbjct: 92 HYISKMFL 99
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 59/71 (83%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV++FDRHCNMVLENV+E+W+E +GKK + NK+RFISK+FLR
Sbjct: 44 IISLRNNHKIIARVKSFDRHCNMVLENVKEIWSE----REGKKIS---NKERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVI+VL+ P
Sbjct: 97 GDSVIVVLKAP 107
>gi|169614612|ref|XP_001800722.1| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
gi|160702782|gb|EAT81846.2| hypothetical protein SNOG_10452 [Phaeosphaeria nodorum SN15]
Length = 133
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 55/84 (65%), Gaps = 17/84 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM--- 57
++S +NN ++L RV+AFDRHCNMVLEN +EMWTE P+ G + VNKDRFISK+
Sbjct: 49 LISCRNNRKILARVKAFDRHCNMVLENAKEMWTETPRLANG-QYGRKVNKDRFISKLYVS 107
Query: 58 -------------FLRGDSVIIVL 68
FLRGDSVI+VL
Sbjct: 108 SAFKTYAMLTASSFLRGDSVILVL 131
>gi|444315235|ref|XP_004178275.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
gi|387511314|emb|CCH58756.1| hypothetical protein TBLA_0A09730 [Tetrapisispora blattae CBS 6284]
Length = 109
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 58/71 (81%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++ RV+AFD+HCNMVLENV+E+WTE G K +NK+RFISK+FLR
Sbjct: 44 IISLRNNHKIIARVKAFDKHCNMVLENVKELWTE----RNGNKL---INKERFISKLFLR 96
Query: 61 GDSVIIVLRNP 71
GDSVI++L++P
Sbjct: 97 GDSVIVILKSP 107
>gi|444706234|gb|ELW47583.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 86
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/81 (69%), Positives = 65/81 (80%), Gaps = 10/81 (12%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK 50
M SVKNNTQ LLG V+AF+RHCN+VLEN++EMWTE+PK+GKGKKK+ PVNK
Sbjct: 1 MKSVKNNTQVLINCRNNEKLLGHVKAFNRHCNVVLENLKEMWTEVPKSGKGKKKSKPVNK 60
Query: 51 DRFISKMFLRGDSVIIVLRNP 71
D +ISKMFL GDSVIIVL NP
Sbjct: 61 DCYISKMFLHGDSVIIVLGNP 81
>gi|403414237|emb|CCM00937.1| predicted protein [Fibroporia radiculosa]
Length = 114
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 7/73 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVR---EMWTELPKTGKGKKKALPVNKDRFISKM 57
++S++NN +LL RV+AFDRH + V+ +MWTELPK GK KK PVNKDRFISKM
Sbjct: 44 LISLRNNKKLLARVKAFDRHSTGKCKRVQTFVQMWTELPK-GKNKK---PVNKDRFISKM 99
Query: 58 FLRGDSVIIVLRN 70
FLRGDSVI++LRN
Sbjct: 100 FLRGDSVILILRN 112
>gi|344232757|gb|EGV64630.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 137
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 3/70 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN-KDRFISKMFL 59
++S +NN +L+ +V+AFDRHCN++LENV+E+WTE K KG K + VN K+RF+SK+FL
Sbjct: 69 VISCRNNHKLVAKVKAFDRHCNLILENVKELWTEPVKNNKG--KVIKVNQKERFVSKLFL 126
Query: 60 RGDSVIIVLR 69
RGDSVI+V++
Sbjct: 127 RGDSVIVVVK 136
>gi|320583711|gb|EFW97924.1| Core Sm protein Sm D2 [Ogataea parapolymorpha DL-1]
Length = 110
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +LL +V+AFDRHCNM+LENV+E+WTE + KK + ++RF+SKMFLR
Sbjct: 44 LISLRNNHKLLAKVKAFDRHCNMILENVKEIWTETNPDDRNKK----MMRERFVSKMFLR 99
Query: 61 GDSVIIVLRN 70
GDSVI+VL++
Sbjct: 100 GDSVIVVLKH 109
>gi|403253972|ref|XP_003919759.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Saimiri
boliviensis boliviensis]
Length = 117
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN QLLGRV+AF RHCNMVLENV+EMWTE+ KK+ PV+KDR +SKMFLR
Sbjct: 43 LINCRNNKQLLGRVKAFHRHCNMVLENVKEMWTEV-PKSSKGKKSKPVSKDRRVSKMFLR 101
Query: 61 GDSVIIVLRNP 71
GDSV +VLRNP
Sbjct: 102 GDSVTVVLRNP 112
>gi|281209973|gb|EFA84141.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 667
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/59 (77%), Positives = 55/59 (93%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 59
+++V+NN +LLG VRAFDRHCNMVLENV+EMWTE+PKTGKGKKKA PVNKDRFISK+ +
Sbjct: 34 LINVRNNKKLLGTVRAFDRHCNMVLENVKEMWTEIPKTGKGKKKAKPVNKDRFISKILI 92
>gi|119570508|gb|EAW50123.1| hCG2040270 [Homo sapiens]
Length = 117
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ ++NT+LLG V+AF RHCNMVLENV+E WTE+PK+GKGKK PVNKD +IS+MFL
Sbjct: 43 LINCRHNTKLLGHVKAFHRHCNMVLENVKETWTEVPKSGKGKKSK-PVNKDCYISRMFLH 101
Query: 61 GDSVIIVLRNP 71
GD VI+VLRNP
Sbjct: 102 GDLVIVVLRNP 112
>gi|403222339|dbj|BAM40471.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 105
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%), Gaps = 4/72 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++L RV+AFDRH NM+L +VREMWT KG KK + KDRFI+++FLR
Sbjct: 38 LINCRNNRKILARVKAFDRHFNMILTDVREMWT---VKSKGNKKKMET-KDRFITRLFLR 93
Query: 61 GDSVIIVLRNPK 72
GDSVI+VL+NPK
Sbjct: 94 GDSVIVVLKNPK 105
>gi|260942737|ref|XP_002615667.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
gi|238850957|gb|EEQ40421.1| hypothetical protein CLUG_04549 [Clavispora lusitaniae ATCC 42720]
Length = 112
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 57/71 (80%), Gaps = 5/71 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGK--KKALPVNKDRFISKMF 58
++ +NN +++G+V+AFDRHCN++LE+V+E+WTE + KG K A +K+RFISK+F
Sbjct: 44 VVHCRNNHKVIGKVKAFDRHCNLILEDVKELWTETTRNSKGAVIKTA---SKERFISKLF 100
Query: 59 LRGDSVIIVLR 69
LRGDSVIIVL+
Sbjct: 101 LRGDSVIIVLK 111
>gi|444729289|gb|ELW69714.1| Deleted in malignant brain tumors 1 protein [Tupaia chinensis]
Length = 1650
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/70 (70%), Positives = 63/70 (90%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLG V+AFDRH NMVLEN++E+WTE+PK+GKGKKK+ PVNKDR+ISKMFL
Sbjct: 1575 LINCRNNKKLLGHVKAFDRHRNMVLENMKEIWTEVPKSGKGKKKSKPVNKDRYISKMFLC 1634
Query: 61 GDSVIIVLRN 70
GDSVI+VL N
Sbjct: 1635 GDSVIVVLWN 1644
>gi|50306997|ref|XP_453476.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642610|emb|CAH00572.1| KLLA0D09284p [Kluyveromyces lactis]
Length = 110
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 57/69 (82%), Gaps = 7/69 (10%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +L+ RV++FD+HCNMVLENV+E+WTE GKK VN++RF++K+FLR
Sbjct: 48 IISLRNNHKLIARVKSFDKHCNMVLENVKEIWTE---NVNGKK----VNRERFVAKLFLR 100
Query: 61 GDSVIIVLR 69
GDSVIIV++
Sbjct: 101 GDSVIIVVK 109
>gi|12718491|emb|CAC28820.1| probable small nuclear ribonucleoprotein chain D2 [Neurospora
crassa]
Length = 126
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++SV+N ++L RV+AFDRH NMVLENV+EMWTE P+ G KK PVNKDRFISKMF+
Sbjct: 51 LISVRNGRKILARVKAFDRHMNMVLENVKEMWTETPRLANG-KKGKPVNKDRFISKMFVH 109
>gi|67470740|ref|XP_651333.1| small nuclear ribonucleoprotein Sm D2 [Entamoeba histolytica
HM-1:IMSS]
gi|167383658|ref|XP_001736617.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|167391078|ref|XP_001739631.1| small nuclear ribonucleoprotein sm D2 [Entamoeba dispar SAW760]
gi|56468055|gb|EAL45945.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|165896637|gb|EDR23988.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|165900902|gb|EDR27123.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba dispar
SAW760]
gi|407040095|gb|EKE39972.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449709579|gb|EMD48820.1| small nuclear ribonucleoprotein sm D2, putative [Entamoeba
histolytica KU27]
Length = 101
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +L+ RV+AFDRH NMVLEN++E+WTE+ + GK KA R ISKMFLR
Sbjct: 27 LINCRNNKKLICRVKAFDRHFNMVLENIKEIWTEMKRDSDGKLKAKLCQ--RSISKMFLR 84
Query: 61 GDSVIIVLRNP 71
GDSVI++++NP
Sbjct: 85 GDSVIVIVKNP 95
>gi|238882386|gb|EEQ46024.1| small nuclear ribonucleoprotein Sm D2 [Candida albicans WO-1]
Length = 112
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G+VRAFDRHCN+VLENV+E+WTE KK ++K+RFISKMFLR
Sbjct: 44 IISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DIKNNKGKKIKSISKERFISKMFLR 102
Query: 61 GDSVIIVLR 69
GDSVII+L+
Sbjct: 103 GDSVIIILK 111
>gi|259487148|tpe|CBF85589.1| TPA: small nuclear ribonucleoprotein SmD2, putative
(AFU_orthologue; AFUA_5G12910) [Aspergillus nidulans
FGSC A4]
Length = 113
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 49/59 (83%), Gaps = 4/59 (6%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 59
++S+++N +LL RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISKM+L
Sbjct: 49 LISLRSNRKLLARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISKMYL 103
>gi|255724860|ref|XP_002547359.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
gi|240135250|gb|EER34804.1| small nuclear ribonucleoprotein Sm D2 [Candida tropicalis MYA-3404]
Length = 112
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 55/69 (79%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G+VRAFDRHCN+VLENV+++W+E KK V K+RFISK+FLR
Sbjct: 44 IISCRNNHKLIGKVRAFDRHCNLVLENVKDLWSE-DIKNNKGKKIKSVPKERFISKLFLR 102
Query: 61 GDSVIIVLR 69
GDSVII+L+
Sbjct: 103 GDSVIIILK 111
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
invadens IP1]
Length = 100
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +L+ RV+AFDRH NMVLENV+E WTE+ K +GK K P R +SKMFLR
Sbjct: 27 IINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEMQKMPEGKPK--PKTCHRNVSKMFLR 84
Query: 61 GDSVIIVLRNPK 72
GDSVIIV++ P+
Sbjct: 85 GDSVIIVVKAPE 96
>gi|328350738|emb|CCA37138.1| Probable small nuclear ribonucleoprotein Sm D2 [Komagataella
pastoris CBS 7435]
Length = 108
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 56/71 (78%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++N+ +L+ +V+AFDRHCNMVLENV+E WT++ G K V ++RF+SKMFLR
Sbjct: 44 IISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDI---NNGTK----VTRERFVSKMFLR 96
Query: 61 GDSVIIVLRNP 71
GDSV+++L++
Sbjct: 97 GDSVVVILKHS 107
>gi|254566467|ref|XP_002490344.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
gi|238030140|emb|CAY68063.1| Core Sm protein Sm D2 [Komagataella pastoris GS115]
Length = 124
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 56/71 (78%), Gaps = 7/71 (9%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++N+ +L+ +V+AFDRHCNMVLENV+E WT++ G K V ++RF+SKMFLR
Sbjct: 60 IISLRNDHKLIAKVKAFDRHCNMVLENVKEFWTDI---NNGTK----VTRERFVSKMFLR 112
Query: 61 GDSVIIVLRNP 71
GDSV+++L++
Sbjct: 113 GDSVVVILKHS 123
>gi|154310658|ref|XP_001554660.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 116
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 49/58 (84%), Gaps = 3/58 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPK-TGKGKKKALPVNKDRFISKM 57
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE P+ +G GK + PVNKDRFISK+
Sbjct: 50 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLSGGGKGR--PVNKDRFISKI 105
>gi|241951640|ref|XP_002418542.1| small nuclear ribonucleoprotein sm d2, putative; small nuclear
riboucleoprotein (snrnp) core protein d2, putative
[Candida dubliniensis CD36]
gi|223641881|emb|CAX43844.1| small nuclear ribonucleoprotein sm d2, putative [Candida
dubliniensis CD36]
Length = 112
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +L+G+VRAFDRHCN+VLENV+E+WTE KK ++K+RFISK+FLR
Sbjct: 44 IISCRNNHKLIGKVRAFDRHCNLVLENVKELWTE-DIKNNKGKKIKSISKERFISKLFLR 102
Query: 61 GDSVIIVLR 69
GDSVII+L+
Sbjct: 103 GDSVIIILK 111
>gi|109089899|ref|XP_001087489.1| PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Macaca
mulatta]
gi|355745907|gb|EHH50532.1| hypothetical protein EGM_01380 [Macaca fascicularis]
Length = 118
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 10/78 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLG V+AFDRH NMVLENV+EMWTE+PK+GKGKKK+ PVNKD
Sbjct: 35 SVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLENVKEMWTEVPKSGKGKKKSKPVNKDC 94
Query: 53 FISKMFLRGDSVIIVLRN 70
+ISKMFL DSVI+VLRN
Sbjct: 95 YISKMFLHRDSVIVVLRN 112
>gi|385303470|gb|EIF47543.1| small nuclear ribonucleoprotein sm d2 [Dekkera bruxellensis
AWRI1499]
Length = 136
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 52/68 (76%), Gaps = 4/68 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +L+ +V+AFDRHCNM+LENVRE W E + +K + ++RF+ KMFLR
Sbjct: 44 LISLRNNHKLIAKVKAFDRHCNMILENVREFWNETXPNDRKRK----IVRERFVLKMFLR 99
Query: 61 GDSVIIVL 68
GDSVI++L
Sbjct: 100 GDSVIVIL 107
>gi|116208252|ref|XP_001229935.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88184016|gb|EAQ91484.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 103
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 46/57 (80%), Gaps = 2/57 (3%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 57
++S+++N +LL RV+AFDRHCNM+LENV+EMWTE P KK PVNKDRFISKM
Sbjct: 49 LISIRSNRKLLARVKAFDRHCNMILENVKEMWTETP--VHNGKKGRPVNKDRFISKM 103
>gi|296418693|ref|XP_002838960.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634953|emb|CAZ83151.1| unnamed protein product [Tuber melanosporum]
Length = 96
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 47/68 (69%), Gaps = 17/68 (25%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLEN R PVNKDRFISKMFLR
Sbjct: 44 LISCRNNRKLLARVKAFDRHCNMVLENGR-----------------PVNKDRFISKMFLR 86
Query: 61 GDSVIIVL 68
GDSVI+VL
Sbjct: 87 GDSVILVL 94
>gi|429327958|gb|AFZ79718.1| hypothetical protein BEWA_025670 [Babesia equi]
Length = 921
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 47/58 (81%), Gaps = 2/58 (3%)
Query: 14 VRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71
V+AFDRHCNM+L + RE+WTE K G GKK+ + KDR +S++FLRGDSVI+VL+NP
Sbjct: 865 VKAFDRHCNMILTDARELWTETVKVG-GKKQRSSI-KDRHLSRVFLRGDSVIVVLKNP 920
>gi|145509212|ref|XP_001440550.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407767|emb|CAK73153.1| unnamed protein product [Paramecium tetraurelia]
Length = 152
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 14/83 (16%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR-------- 52
+ ++NN + LGRV+AFDRH NM+LEN+ EMW E+ K KGK P K R
Sbjct: 73 FLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETKGKS---PCYKQRKIQNQYKI 129
Query: 53 ---FISKMFLRGDSVIIVLRNPK 72
+I KMFLRGDSVI LRN K
Sbjct: 130 IFYYIPKMFLRGDSVIYTLRNLK 152
>gi|355562622|gb|EHH19216.1| hypothetical protein EGK_19888 [Macaca mulatta]
Length = 118
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 62/78 (79%), Gaps = 10/78 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LLG V+AFDRH NMVLE+V+EMWTE+PK+GKGKKK+ PVNKD
Sbjct: 35 SVKNNTQVLINCGNNKKLLGHVKAFDRHRNMVLEDVKEMWTEVPKSGKGKKKSKPVNKDC 94
Query: 53 FISKMFLRGDSVIIVLRN 70
+ISKMFL DSVI+VLRN
Sbjct: 95 YISKMFLHRDSVIVVLRN 112
>gi|313233805|emb|CBY09974.1| unnamed protein product [Oikopleura dioica]
Length = 53
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/49 (79%), Positives = 42/49 (85%), Gaps = 1/49 (2%)
Query: 23 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71
MVLENV+EMW E PKT KGK PVN+DRFISKMFLRGDSVIIVL+NP
Sbjct: 1 MVLENVKEMWVERPKTSKGKG-GQPVNRDRFISKMFLRGDSVIIVLKNP 48
>gi|326472609|gb|EGD96618.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton tonsurans CBS
112818]
gi|326483579|gb|EGE07589.1| small nuclear ribonucleoprotein Sm D2 [Trichophyton equinum CBS
127.97]
Length = 129
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 53/94 (56%), Gaps = 30/94 (31%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM--- 57
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKM
Sbjct: 38 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFISKMYVY 93
Query: 58 -----------------------FLRGDSVIIVL 68
FLRGDSVI+VL
Sbjct: 94 TKLARTFPSHRICDNTILTRPSRFLRGDSVILVL 127
>gi|68071819|ref|XP_677823.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56498082|emb|CAH95523.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 101
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +FLR
Sbjct: 33 LINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVIKDKKKKKKIN---KDRYISILFLR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI++LRNPK
Sbjct: 90 GDSVILILRNPK 101
>gi|327352187|gb|EGE81044.1| small nuclear ribonucleoprotein Sm D2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 131
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SKM+++
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSKMYVQ 104
Query: 61 GDSVIIVLRN 70
++ ++ N
Sbjct: 105 TNTCLLATGN 114
>gi|70942126|ref|XP_741266.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|70945863|ref|XP_742706.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56519539|emb|CAH84536.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
gi|56521836|emb|CAH78030.1| hypothetical protein PC000715.02.0 [Plasmodium chabaudi chabaudi]
Length = 101
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +FLR
Sbjct: 33 LINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEVVKDKKKKKKIN---KDRYISILFLR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI++LRNPK
Sbjct: 90 GDSVILILRNPK 101
>gi|82915132|ref|XP_728974.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23485713|gb|EAA20539.1| small nuclear ribonucleoprotein. [Plasmodium yoelii yoelii]
Length = 101
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LLGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +FLR
Sbjct: 33 LINCRNNRKLLGRVKAFDRHCNLLLTEVREIWVEIIKDKKKKKKIN---KDRYISILFLR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI++LRNPK
Sbjct: 90 GDSVILILRNPK 101
>gi|47215802|emb|CAG02856.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 55/58 (94%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 58
+++ +NN +LLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMF
Sbjct: 42 LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 99
>gi|124801422|ref|XP_001349689.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|3845296|gb|AAC71962.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN ++LGRV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +FLR
Sbjct: 33 LINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKKIN---KDRYISILFLR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI++LRNPK
Sbjct: 90 GDSVILILRNPK 101
>gi|156093647|ref|XP_001612862.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium vivax Sal-1]
gi|221052951|ref|XP_002257850.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|148801736|gb|EDL43135.1| small nuclear ribonucleoprotein Sm D2, putative [Plasmodium vivax]
gi|193807682|emb|CAQ38386.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
gi|390371035|dbj|GAB64916.1| small nuclear ribonucleoprotein Sm D2 [Plasmodium cynomolgi strain
B]
Length = 101
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+++ +NN +LL RV+AFDRHCN++L VRE+W E+ K K KKK KDR+IS +FLR
Sbjct: 33 LINCRNNRKLLARVKAFDRHCNLLLTEVREIWVEVVKDKKKKKKIN---KDRYISILFLR 89
Query: 61 GDSVIIVLRNPK 72
GDSVI++LRNPK
Sbjct: 90 GDSVILILRNPK 101
>gi|67522691|ref|XP_659406.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
gi|40745811|gb|EAA64967.1| hypothetical protein AN1802.2 [Aspergillus nidulans FGSC A4]
Length = 73
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 40/49 (81%), Gaps = 4/49 (8%)
Query: 11 LGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 59
L RV+AFDRH NMVLENV+EMWTE K GKG+ PVNKDRFISKM+L
Sbjct: 19 LARVKAFDRHSNMVLENVKEMWTEPQKGGKGR----PVNKDRFISKMYL 63
>gi|444720876|gb|ELW61643.1| Small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 144
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 53/79 (67%), Gaps = 10/79 (12%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
S KNNTQ +LG V FDRH MVLENV+ M TE PK GK KKK+ PVNKDR
Sbjct: 5 SAKNNTQELINCFYDKKILGCVETFDRHYTMVLENVKRMRTEFPKNGKDKKKSKPVNKDR 64
Query: 53 FISKMFLRGDSVIIVLRNP 71
+ISKMFL + I+VL+NP
Sbjct: 65 YISKMFLHRNVGIVVLQNP 83
>gi|302652082|ref|XP_003017901.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
gi|291181486|gb|EFE37256.1| small nuclear ribonucleoprotein SmD2, putative [Trichophyton
verrucosum HKI 0517]
Length = 111
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 57
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRFISKM
Sbjct: 59 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFISKM 111
>gi|194745332|ref|XP_001955142.1| GF18622 [Drosophila ananassae]
gi|190628179|gb|EDV43703.1| GF18622 [Drosophila ananassae]
Length = 56
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 47/49 (95%)
Query: 23 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71
MVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 49
>gi|444721316|gb|ELW62058.1| putative small nuclear ribonucleoprotein Sm D2 [Tupaia chinensis]
Length = 165
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 7 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
N +LLGR +A DR CNMV +NV+E+W E+P++GKGKK PV+KD +S+M L G
Sbjct: 81 NQKLLGRAKALDRRCNMVPDNVKELWAEVPQSGKGKKSK-PVHKDCHVSRMLLPG 134
>gi|413942323|gb|AFW74972.1| hypothetical protein ZEAMMB73_294095 [Zea mays]
Length = 116
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 42/59 (71%), Gaps = 12/59 (20%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK--KALP 47
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE+ +T + K +LP
Sbjct: 23 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVGRTERSLKLLSSLP 81
>gi|320037519|gb|EFW19456.1| small nuclear ribonucleoprotein Sm D2 [Coccidioides posadasii str.
Silveira]
Length = 100
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 4/56 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 56
++S +NN +LL RV+AFDRHCNMVLENV+EMWTE K VNKDRF+SK
Sbjct: 49 LISCRNNRKLLARVKAFDRHCNMVLENVKEMWTE----KPKGGKGKGVNKDRFVSK 100
>gi|242087889|ref|XP_002439777.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
gi|241945062|gb|EES18207.1| hypothetical protein SORBIDRAFT_09g019920 [Sorghum bicolor]
Length = 105
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 37/39 (94%)
Query: 34 ELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 72
++PKTGKGKK ALPVNKDRFISK+FLRG+ VIIVLR+PK
Sbjct: 67 QVPKTGKGKKAALPVNKDRFISKIFLRGNRVIIVLRDPK 105
>gi|238006980|gb|ACR34525.1| unknown [Zea mays]
gi|414586341|tpg|DAA36912.1| TPA: hypothetical protein ZEAMMB73_879106 [Zea mays]
Length = 85
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 40/59 (67%), Gaps = 15/59 (25%)
Query: 1 MMSVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTE-----LPKTGKGKKK 44
MMSVKNNTQ LLGRVRAFDRHCNMVLENVREMWTE P+ + K++
Sbjct: 24 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEDFLSRSPRLARAKRR 82
>gi|449292825|gb|EMC90804.1| Small nuclear ribonucleoprotein Sm D2 [Columba livia]
Length = 54
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 48/49 (97%)
Query: 23 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71
MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 49
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 7/68 (10%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ V+NN +L+G +RAFD+H N++LENVRE+WT + +R+I+KM LR
Sbjct: 23 IIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKN-------IFYHERYIAKMILR 75
Query: 61 GDSVIIVL 68
GDS++++L
Sbjct: 76 GDSIVLLL 83
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 64.7 bits (156), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S ++N +L G +RA+D+H N+++E+VRE+W E + P ++RFIS++F+R
Sbjct: 257 LVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQE------SQPDRPPDLRERFISRLFVR 310
Query: 61 GDSVIIVLR 69
GD VI ++R
Sbjct: 311 GDGVIFIVR 319
>gi|161899517|ref|XP_001712984.1| mRNA splicing factor [Bigelowiella natans]
gi|75756479|gb|ABA27372.1| mRNA splicing factor [Bigelowiella natans]
Length = 101
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S +N + G +R FD+HCN++LE+V E+W E + KK + + K++FI K+F R
Sbjct: 32 IISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVI-KEKFIPKLFFR 90
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 91 GDAVILI 97
>gi|403287226|ref|XP_003934853.1| PREDICTED: uncharacterized protein LOC101043343 [Saimiri
boliviensis boliviensis]
Length = 269
Score = 63.9 bits (154), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 11/79 (13%)
Query: 3 SVKNNTQ----------LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 52
SVKNNTQ LL V+A DRHCNMVLEN EM TE+PK+GKGKKK+ PV+KDR
Sbjct: 35 SVKNNTQGLLNCHSNKKLLDPVKASDRHCNMVLEN-EEMRTEVPKSGKGKKKSKPVDKDR 93
Query: 53 FISKMFLRGDSVIIVLRNP 71
+I+KMFL G+ I+VLR+P
Sbjct: 94 YIAKMFLCGNWAIVVLRHP 112
>gi|399949825|gb|AFP65482.1| small nuclear ribonucleoprotein SM D2 [Chroomonas mesostigmatica
CCMP1168]
Length = 85
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 6/69 (8%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M+ ++NN +LLG +RAFDRH N++++N +E+WT K K K K ++F K+ LR
Sbjct: 22 MIFIRNNKKLLGYIRAFDRHMNLIIDNGKEIWTS--KCSKKKVKF----HEKFFPKLVLR 75
Query: 61 GDSVIIVLR 69
GDS+I+++R
Sbjct: 76 GDSIILIVR 84
>gi|164657289|ref|XP_001729771.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
gi|159103664|gb|EDP42557.1| hypothetical protein MGL_3315 [Malassezia globosa CBS 7966]
Length = 104
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP 36
++S++NN +LL RV+AFDRH NMVLENV+EMWTE+P
Sbjct: 44 LISLRNNKKLLARVKAFDRHSNMVLENVKEMWTEVP 79
>gi|165934067|gb|ABY74561.1| small nuclear ribonucleoprotein D2 (predicted) [Callithrix
jacchus]
Length = 53
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 23 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71
MVLENV+EMWTE+PK+GK KK+ PV+KDR+ISKMF RGDSVI+VLRNP
Sbjct: 1 MVLENVKEMWTEVPKSGK-GKKSKPVSKDRYISKMFRRGDSVIVVLRNP 48
>gi|123414193|ref|XP_001304446.1| Sm protein [Trichomonas vaginalis G3]
gi|121885898|gb|EAX91516.1| Sm protein [Trichomonas vaginalis G3]
Length = 111
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++++++N +L G ++A DRH NM+LE+V E+ T P G+ A P+ R I+++FLR
Sbjct: 38 LIALRSNRKLYGYIKAVDRHWNMILEHVIEI-TPTP-AKPGQPAAAPIQ--RRINRLFLR 93
Query: 61 GDSVIIVLRNPK 72
GD+VI + NPK
Sbjct: 94 GDNVICIYPNPK 105
>gi|19074769|ref|NP_586275.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
gi|19069411|emb|CAD25879.1| SMALL NUCLEAR RIBONUCLEOPROTEIN D2 [Encephalitozoon cuniculi GB-M1]
Length = 135
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N ++LGRV A+DRH N+++E+ +E+ T K KG+KK R + K+F+R
Sbjct: 36 LVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN-KGRKKRQGCEFSRKLGKVFIR 94
Query: 61 GDSVIIV 67
GD+VI+V
Sbjct: 95 GDTVILV 101
>gi|449329925|gb|AGE96193.1| small nuclear ribonucleoprotein d2 [Encephalitozoon cuniculi]
Length = 135
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S+++N ++LGRV A+DRH N+++E+ +E+ T K KG+KK R + K+F+R
Sbjct: 36 LVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN-KGRKKRQGCEFSRKLGKVFIR 94
Query: 61 GDSVIIV 67
GD+VI+V
Sbjct: 95 GDTVILV 101
>gi|303314445|ref|XP_003067231.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240106899|gb|EER25086.1| conserved hypothetical protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 44
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 36/46 (78%), Gaps = 4/46 (8%)
Query: 23 MVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 68
MVLENV+EMWTE PK K VNKDRF+SKMFLRGDSVI+VL
Sbjct: 1 MVLENVKEMWTEKPKG----GKGKGVNKDRFVSKMFLRGDSVILVL 42
>gi|403272537|ref|XP_003928113.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D2-like [Saimiri boliviensis
boliviensis]
Length = 221
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S NN +LLG V AFD HCN VLENV+EM TE+PK+ KK+ PVNK R+I MFL
Sbjct: 43 LISCSNNKKLLGGVXAFDGHCNAVLENVKEMGTEVPKS-GKGKKSKPVNKARYIPGMFLL 101
Query: 61 GD 62
D
Sbjct: 102 RD 103
>gi|401827885|ref|XP_003888235.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
gi|392999435|gb|AFM99254.1| Sm-like ribonucleoprotein subunit D2 [Encephalitozoon hellem ATCC
50504]
Length = 128
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++G+V A+DRH N+++E+ +E+ T K +GKKK R + +F+R
Sbjct: 36 LVSLRNNRKVVGKVIAYDRHYNLLMEDAKELGTMRGKN-RGKKKRQGCGFSRRLGNVFIR 94
Query: 61 GDSVIIV 67
GD+VI+V
Sbjct: 95 GDTVILV 101
>gi|224137176|ref|XP_002327056.1| predicted protein [Populus trichocarpa]
gi|222835371|gb|EEE73806.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MMSVKNNTQLL------GRVRAFDRHCNMVLENVR-------EMWTEL-PKTGKGKKKAL 46
M+S+K NTQ+L ++ A H + L R + L KTGKG++KA
Sbjct: 30 MISIKRNTQVLINLCNNKKLLAHSHHMVVWLAAGRLYPSCRFHAYALLVEKTGKGEEKAR 89
Query: 47 PVNKDRFISKMFLRGDSVIIVLRNPK 72
+N++RFISK+FLRGDSVI++L N +
Sbjct: 90 TINRERFISKIFLRGDSVIVILMNQR 115
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ KN +L+GR+ AFD HCNMVL +V E T + K + V K R +F+RG
Sbjct: 24 LKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTKVTK-RDNGTIFVRG 82
Query: 62 DSVIIV 67
DS++++
Sbjct: 83 DSLVLL 88
>gi|442746065|gb|JAA65192.1| Putative small nuclear ribonucleoprotein d2 polypeptide, partial
[Ixodes ricinus]
Length = 131
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 20 HCNMVLENVREMWTELP-KTGKGKKKALPV-NKDR--FISKMFLRGDSVIIVLRNP 71
+CNM +ENV+EMWTE + + +++ PV KDR +MFLRGDSVI+VL P
Sbjct: 55 YCNMFVENVKEMWTETSNERERYREETNPVRTKDRPTIYQRMFLRGDSVILVLNEP 110
>gi|399216324|emb|CCF73012.1| unnamed protein product [Babesia microti strain RI]
Length = 93
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
K N ++ G++ A+D HCN++LE+ E + TE P+TG N D +F+RG
Sbjct: 27 KGNREITGKLHAYDEHCNIILEDAVETITVITEDPETGTESTSVNTKNSDV----LFVRG 82
Query: 62 DSVIIVLRNPK 72
DS+I+V +PK
Sbjct: 83 DSIILV--SPK 91
>gi|162606564|ref|XP_001713312.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
gi|12580778|emb|CAC27096.1| small nuclear ribonucleoprotein SM D2 [Guillardia theta]
Length = 82
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M+ ++NN +++G++ +D+H N++LENV E+ G+ + + + K +FI K+FLR
Sbjct: 18 MIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSELIKI-KSKFIPKVFLR 72
Query: 61 GDSVIIVL 68
GD+++++L
Sbjct: 73 GDNIVLIL 80
>gi|396082353|gb|AFN83963.1| small nuclear ribonucleoprotein D2 [Encephalitozoon romaleae
SJ-2008]
Length = 128
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN +++G+V A+DRH N+++ + +E+ + KGKKK + R + +F+R
Sbjct: 36 LVSLRNNRKVMGKVIAYDRHYNLLMGDAKEIGN-MRGRNKGKKKRQGCDFSRRLGNVFIR 94
Query: 61 GDSVIIV 67
GD+VI+V
Sbjct: 95 GDTVILV 101
>gi|303391220|ref|XP_003073840.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302988|gb|ADM12480.1| small nuclear ribonucleoprotein D2 [Encephalitozoon intestinalis
ATCC 50506]
Length = 136
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++S++NN ++ G+V A+DRH N+++ RE T + KG+KK R + +F+R
Sbjct: 36 LISLRNNRKVTGKVVAYDRHYNLLVREAREFGTARGRN-KGRKKRQGSEFSRKLGNVFIR 94
Query: 61 GDSVIIV 67
GD+VI+V
Sbjct: 95 GDTVILV 101
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+RAFD+H NMVL +V E T + + + + R + +F+RGDSV
Sbjct: 34 RNDRELRGRLRAFDQHLNMVLSDVEETIT-TREVDEDTFEEIYRQSKRVVPMLFVRGDSV 92
Query: 65 IIV 67
I+V
Sbjct: 93 ILV 95
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+RAFD+H NMVL V E T + + + + R + +F+RGDSV
Sbjct: 34 RNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEEIYRQSKRVVPMLFVRGDSV 92
Query: 65 IIV 67
I+V
Sbjct: 93 ILV 95
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ NK R + MF+RGD
Sbjct: 32 MRNDRELRGRLHAYDQHLNMILSDVEETITTVEIDEETFEELFRTNK-RTVPMMFIRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+RAFD+H NMVL V E T + + + + R + +F+RGDSV
Sbjct: 34 RNDRELRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEEIYKQTKRVVPMLFVRGDSV 92
Query: 65 IIV 67
I+V
Sbjct: 93 ILV 95
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMF 58
+ KN +L+GR+ AFD HCNMVL V E T + P T + K R +F
Sbjct: 24 LKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTNQQPNKV----TRRDSRTVF 79
Query: 59 LRGDSVIIV 67
+RGDS+I++
Sbjct: 80 VRGDSLILL 88
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ ++ GR+RAFD+H NMVL V E T + + + + R + +F+RGDSV
Sbjct: 34 RNDREIRGRLRAFDQHLNMVLSEVEETIT-TREVDEDTFEEIYRQTKRVVPMLFVRGDSV 92
Query: 65 IIV 67
I+V
Sbjct: 93 ILV 95
>gi|443924030|gb|ELU43109.1| hypothetical protein AG1IA_02870 [Rhizoctonia solani AG-1 IA]
Length = 50
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 26/36 (72%), Gaps = 4/36 (11%)
Query: 31 MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 66
MWTE K GK VNKDRFISKMFLRGDSVI+
Sbjct: 1 MWTETQKGKNGK----TVNKDRFISKMFLRGDSVIL 32
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMFLRG 61
K +++GR+ A+D HCNM+L + +E T P T + KK+ V +D +F+RG
Sbjct: 27 KGGREIVGRLHAYDEHCNMILSDAKETITTAEIEPTTNEEIKKS--VQRDS--GTVFIRG 82
Query: 62 DSVIIVLRNPK 72
DS+I++ + +
Sbjct: 83 DSLILLSHHEQ 93
>gi|50546547|ref|XP_500743.1| YALI0B11022p [Yarrowia lipolytica]
gi|49646609|emb|CAG82989.1| YALI0B11022p [Yarrowia lipolytica CLIB122]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTEL----PKTGKGKKKALPVNKDRFISKMFL 59
++ +L G + A+D HC+MVL NV E E PK KKK+ +F+
Sbjct: 28 LRGGRELYGLLHAYDIHCSMVLGNVEETVFEYVEGSPKLEARKKKS---------EMLFV 78
Query: 60 RGDSVIIVLRNP 71
RGDSVI+V NP
Sbjct: 79 RGDSVILVTSNP 90
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+K N +L G + AFD H NM+L NV E T L + ++ K R I +F+RGD
Sbjct: 35 MKRNRELRGVLHAFDSHLNMILGNVEETVTTLEIDEETYEEVYKTTK-RTIPMLFIRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|19112539|ref|NP_595747.1| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|10720084|sp|Q9Y7M4.2|LSM3_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|6942158|emb|CAB42366.2| U6 snRNP-associated protein Lsm3 (predicted) [Schizosaccharomyces
pombe]
Length = 93
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D H NMVL + E+ T K KAL + + +F+RGDS
Sbjct: 26 LRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EMLFVRGDS 84
Query: 64 VIIV 67
VI++
Sbjct: 85 VILI 88
>gi|387593780|gb|EIJ88804.1| hypothetical protein NEQG_00623 [Nematocida parisii ERTm3]
gi|387595086|gb|EIJ92712.1| hypothetical protein NEPG_02403 [Nematocida parisii ERTm1]
Length = 91
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++VK N +++G + D+H N++L + E T+LP KGKK+ + R + +F+RG
Sbjct: 22 VTVKGNREVVGTMELTDKHMNVLLRDAVETRTQLPSMLKGKKRQIKKVFTRTLGNVFIRG 81
Query: 62 DSVIIV 67
++VI +
Sbjct: 82 ETVIAI 87
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+K N +L G + AFD H NM+L NV E T L + ++ K R I +F+RGD
Sbjct: 37 MKRNRELRGILHAFDSHLNMILGNVEETVTTLEIDEETYEEVYKTTK-RTIPMLFIRGDG 95
Query: 64 VIIV 67
VI+V
Sbjct: 96 VILV 99
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFISKMFLR 60
+++++ QL+G+ AFDRH N VL + E PK G GK++ +D R + + LR
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEEREDRRTLGLILLR 78
Query: 61 GDSVI 65
G+ V+
Sbjct: 79 GEEVV 83
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++ + +L GR+ A+D+H NM+L V E T + + ++ + NK R + +F+RG
Sbjct: 25 VKLRGDRELRGRLHAYDQHLNMILGEVEETITSIEIDDETYEEIIKTNK-RAVPFLFVRG 83
Query: 62 DSVIIV 67
D VI+V
Sbjct: 84 DGVILV 89
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 33 RNDRELKGRLHAYDQHMNMILSDVEETITTVEIDEETYEEVYKSTK-RNIPMLFVRGDGV 91
Query: 65 IIV 67
I+V
Sbjct: 92 ILV 94
>gi|146098272|ref|XP_001468379.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|157875373|ref|XP_001686081.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|398021989|ref|XP_003864157.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
gi|401428184|ref|XP_003878575.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|68129154|emb|CAJ06890.1| small nuclear ribonucleoprotein SmD2 [Leishmania major strain
Friedlin]
gi|134072746|emb|CAM71463.1| small nuclear ribonucleoprotein SmD2 [Leishmania infantum JPCM5]
gi|322494823|emb|CBZ30127.1| small nuclear ribonucleoprotein SmD2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322502391|emb|CBZ37475.1| small nuclear ribonucleoprotein SmD2 [Leishmania donovani]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+ +N+ LL V AFD+H N+VL+ V+E+ TE G ++ K R I +FLR
Sbjct: 43 FIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ-----KQRTIENLFLR 92
Query: 61 GDSVIIVLRNP 71
G+SVI +++ P
Sbjct: 93 GESVIFIVKLP 103
>gi|402077069|gb|EJT72418.1| hypothetical protein GGTG_09284, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 142
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLEN 27
++S++NN +LL RV+AFD HCNMVLEN
Sbjct: 116 LISIRNNRKLLARVKAFDYHCNMVLEN 142
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ AFD+H NMVL + E T + + ++ +K R I +F+RGD
Sbjct: 31 MRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTSK-RTIPMLFVRGDG 89
Query: 64 VIIV 67
VI+V
Sbjct: 90 VILV 93
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 34 MRNDRELKGRLHAYDQHLNMILGDVEETVTAVEIDEETYEEIYKSTK-RSIQMLFVRGDG 92
Query: 64 VIIV 67
VI+V
Sbjct: 93 VILV 96
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans
morsitans]
Length = 102
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 34 RNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGV 92
Query: 65 IIV 67
I+V
Sbjct: 93 ILV 95
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + +K R I +F+RGD
Sbjct: 32 LRSDRELRGKLHAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLFVRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 35 RNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGV 93
Query: 65 IIV 67
I+V
Sbjct: 94 ILV 96
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NMVL V E T + + ++ K R I +F+RGD
Sbjct: 32 MRNERELRGRLHAYDQHLNMVLGEVEETVTTIEIDEETYEEVYRTTK-RTIPMLFVRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 32 RNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGV 90
Query: 65 IIV 67
I+V
Sbjct: 91 ILV 93
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++N+ +L GR+ A+D+H NMVL +V E T + + ++ +K R I +++R
Sbjct: 30 LVKMRNDRELRGRLHAYDQHLNMVLGDVEETITTVEIDDETFEELYKTSK-RQIPMLYVR 88
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 89 GDGVILV 95
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M+ ++ + QL G + A+D H NM+L +V E + +G K ++ V K R I +++R
Sbjct: 23 MVKLRGDRQLSGVLHAYDGHMNMILSDVEETVMIVDPVPEGVKPSIRVAK-RQIEMLYVR 81
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 82 GDGVILV 88
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD
Sbjct: 31 MRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDG 89
Query: 64 VIIV 67
VI+V
Sbjct: 90 VILV 93
>gi|426334164|ref|XP_004028631.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D2-like
[Gorilla gorilla gorilla]
Length = 55
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 23 MVLENVREMWTELPKTGKGKKKAL---PVNKDRFISKMFLRGDSVI 65
MVL+NV+EM TE+PK KG K P NKDRFISK+FL DSVI
Sbjct: 1 MVLKNVKEMCTEVPKGDKGGKGKKKSKPANKDRFISKLFLSRDSVI 46
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 33 RNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTK-RSIPMLFVRGDGV 91
Query: 65 IIV 67
I+V
Sbjct: 92 ILV 94
>gi|71051464|gb|AAH14600.1| LOC645339 protein [Homo sapiens]
Length = 55
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 23 MVLENVREMWTELPKTGKGKKK---ALPVNKDRFISKMFLRGDSVI 65
MVLENV+EM TE+PK G G K + P NKD FISK+FL DSVI
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISKLFLCRDSVI 46
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ FD+H NM++ V E T L + ++ + R I +F+RGD
Sbjct: 33 MRNDRELTGRLHGFDQHLNMIMSEVEETVTTLELDEETFEEIYRTTQ-RTIPMIFIRGDG 91
Query: 64 VIIVLRNP 71
VI++ +P
Sbjct: 92 VILISPSP 99
>gi|296005050|ref|XP_002808862.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
gi|225632259|emb|CAX64140.1| lsm3 homologue, putative [Plasmodium falciparum 3D7]
Length = 91
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+ K + +L+G++ A+D H NM+L NVRE + K + V K +R + +F+R
Sbjct: 24 LKCKGDRELIGKLDAYDNHLNMILSNVRETY----KYSVKENDEETVKKMERNLDMVFVR 79
Query: 61 GDSVIIV 67
GDS+I+V
Sbjct: 80 GDSIILV 86
>gi|154344332|ref|XP_001568110.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065444|emb|CAM40878.1| small nuclear ribonucleoprotein SmD2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+ +N+ LL V AFD+H N+VL+ V+E+ TE G ++ K R I +FLR
Sbjct: 43 FIQCRNSKALLAHVIAFDKHFNLVLKGVQEI-TE----SHGSEQ-----KQRTIENLFLR 92
Query: 61 GDSVIIVLRNP 71
G+SV+ +++ P
Sbjct: 93 GESVVFIVKLP 103
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ +K + +L G + A+D+H NMVL NV E E+ + ++ + + R I +FLRG
Sbjct: 23 IKLKGDRELRGTLHAYDQHLNMVLGNVEETIHEIDIDKETNEQQMK-STTRKIGMLFLRG 81
Query: 62 DSVIIVL 68
D VI+V+
Sbjct: 82 DGVILVV 88
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + +K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDDETYEEIVKTSK-RVVPYLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 35 RNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFVRGDGV 93
Query: 65 IIV 67
I+V
Sbjct: 94 ILV 96
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 35 RNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFVRGDGV 93
Query: 65 IIV 67
I+V
Sbjct: 94 ILV 96
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RG
Sbjct: 25 VKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKTTK-RNIPMLFVRG 83
Query: 62 DSVIIV 67
D VI+V
Sbjct: 84 DGVILV 89
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Megachile rotundata]
Length = 103
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NMVL E T + + ++ K R IS +F+RGD
Sbjct: 32 MRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLFVRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NMVL E T + + ++ K R IS +F+RGD
Sbjct: 32 MRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLFVRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ ++ GR+ AFD+H NM+L V E T + + + + + R I +F+RGD+
Sbjct: 36 MRNDREVRGRLHAFDQHLNMILSQVEETVTTV-ELDEENFEEMHKQTKRHIPMLFVRGDA 94
Query: 64 VIIV 67
+I+V
Sbjct: 95 IILV 98
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+++N +L GR+ A+D+H NMVL +V E+ T + + ++ N R +F+RGD
Sbjct: 34 LRSNRELRGRLHAYDQHLNMVLGDVEEIETIVEIDDETYEEVYTKNT-RTFPMLFIRGDG 92
Query: 64 VIIV 67
VI+V
Sbjct: 93 VILV 96
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ AFD+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 35 LRNERELTGRLHAFDQHLNMILGDVEETVTNVEIDDETYEEIYRQVK-RSIPMLFVRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 32 MRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Query: 9 QLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L G+++ +D HCNMVL + E ++ + P T KKK +F+RGDSVI++
Sbjct: 35 ELYGKLQGYDSHCNMVLSDATETIYGDSPDTKPVKKKT---------DMVFVRGDSVILI 85
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L G++ AFD+H NMVL +V E+ + + + + + K R I +F+RGD V
Sbjct: 33 RNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEEIYRQKKRTIQMLFVRGDGV 91
Query: 65 IIV 67
I+V
Sbjct: 92 ILV 94
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ AFD+H NM+L +V E T + + ++ + K R I +F+RGD
Sbjct: 28 LRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|323456789|gb|EGB12655.1| hypothetical protein AURANDRAFT_60633 [Aureococcus anophagefferens]
Length = 779
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 11 LGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70
+G ++AFDRH N+VL + E T +P + +A PV RF+ ++ +RGD+V++V R
Sbjct: 184 VGLLKAFDRHMNLVLVDAAE--TTVPPM-RNPDRARPVT--RFLKQVLIRGDNVVLVCRA 238
Query: 71 P 71
P
Sbjct: 239 P 239
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NMVL +V E T + + ++ ++ R I +F+RGD
Sbjct: 33 MRNERELRGRLHAYDQHLNMVLGDVEETVTSVEIDEETFEEVYKTSR-RSIPMLFVRGDG 91
Query: 64 VIIV 67
VI+V
Sbjct: 92 VILV 95
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ A+D+H NMVL E T + + ++ K R IS +F+RGD V
Sbjct: 26 RNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYRTTK-RNISMLFVRGDGV 84
Query: 65 IIV 67
I+V
Sbjct: 85 ILV 87
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ AFD+H NM+L +V E T + + ++ + K R I +F+RGD
Sbjct: 28 LRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 44.3 bits (103), Expect = 0.011, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RG
Sbjct: 185 VKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRG 243
Query: 62 DSVIIV 67
D VI+V
Sbjct: 244 DGVILV 249
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ A+D+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 33 RNERELRGRLHAYDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGV 91
Query: 65 IIV 67
I+V
Sbjct: 92 ILV 94
>gi|315042007|ref|XP_003170380.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|327298847|ref|XP_003234117.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
gi|311345414|gb|EFR04617.1| hypothetical protein MGYG_07624 [Arthroderma gypseum CBS 118893]
gi|326464295|gb|EGD89748.1| U6 small nuclear ribonucleoprotein [Trichophyton rubrum CBS
118892]
Length = 100
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F+RGDS
Sbjct: 32 LRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETIKTIKKQE--EMLFVRGDS 89
Query: 64 VIIV 67
V+++
Sbjct: 90 VVLI 93
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NMVL V E T + + ++ K R I +F+RGD
Sbjct: 35 MRNERELRGRLHAYDQHLNMVLGEVEETVTAVEIDEETYEEIYKQTK-RTIPMLFVRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Pan troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo
abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Loxodonta africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan
paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio
anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 34 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 99 RNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGV 157
Query: 65 IIV 67
I+V
Sbjct: 158 ILV 160
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++N +L G++ AFD+H NMVL +V E+ + + + + + K R I +F+RG
Sbjct: 57 VKMRNERELRGKLHAFDQHLNMVLGDVEEIIN-IVEIDEETYEEIYRQKKRTIQMLFVRG 115
Query: 62 DSVIIV 67
D VI+V
Sbjct: 116 DGVILV 121
>gi|326483593|gb|EGE07603.1| hypothetical protein TEQG_06517 [Trichophyton equinum CBS 127.97]
Length = 100
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F+RGDS
Sbjct: 32 LRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLFVRGDS 89
Query: 64 VIIV 67
V+++
Sbjct: 90 VVLI 93
>gi|67484430|ref|XP_657435.1| U6 snRNA-associated Sm-like protein LSm3 [Entamoeba histolytica
HM-1:IMSS]
gi|56474688|gb|EAL52049.1| U6 snRNA-associated Sm-like protein LSm3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702203|gb|EMD42886.1| U6 snrnaassociated Sm family LSm3 protein [Entamoeba histolytica
KU27]
Length = 78
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 15/67 (22%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+ ++ +L G++RAFD+H N++L NV EM+ E K + PV +++R
Sbjct: 22 FIKLRGGRKLKGKLRAFDQHLNIILTNVSEMYQE-------KTRTFPV--------LYIR 66
Query: 61 GDSVIIV 67
GD VI++
Sbjct: 67 GDLVILI 73
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus
gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 34 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|390981129|pdb|4EMG|A Chain A, Crystal Structure Of Splsm3
gi|390981130|pdb|4EMG|B Chain B, Crystal Structure Of Splsm3
gi|390981131|pdb|4EMG|C Chain C, Crystal Structure Of Splsm3
gi|390981132|pdb|4EMG|D Chain D, Crystal Structure Of Splsm3
gi|390981133|pdb|4EMG|E Chain E, Crystal Structure Of Splsm3
gi|390981134|pdb|4EMG|F Chain F, Crystal Structure Of Splsm3
gi|390981135|pdb|4EMG|G Chain G, Crystal Structure Of Splsm3
gi|390981136|pdb|4EMG|H Chain H, Crystal Structure Of Splsm3
gi|390981137|pdb|4EMG|I Chain I, Crystal Structure Of Splsm3
gi|390981138|pdb|4EMG|J Chain J, Crystal Structure Of Splsm3
gi|390981139|pdb|4EMG|K Chain K, Crystal Structure Of Splsm3
gi|390981140|pdb|4EMG|L Chain L, Crystal Structure Of Splsm3
gi|390981141|pdb|4EMG|M Chain M, Crystal Structure Of Splsm3
gi|390981142|pdb|4EMG|N Chain N, Crystal Structure Of Splsm3
Length = 93
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++ + +L GR+ A+D H N VL + E+ T K KAL + + +F+RG
Sbjct: 24 VKLRGDRELNGRLHAYDEHLNXVLGDAEEIVTIFDDEETDKDKALKTIRKHY-EXLFVRG 82
Query: 62 DSVIIV 67
DSVI++
Sbjct: 83 DSVILI 88
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 79 RNERELRGRLHAYDQHLNMILGDVEETVTSVEIDEETYEEVYKSTK-RSIPMLFVRGDGV 137
Query: 65 IIV 67
I+V
Sbjct: 138 ILV 140
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + + + L + R I +F+RGD
Sbjct: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 31 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 89
Query: 64 VIIV 67
V++V
Sbjct: 90 VVLV 93
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Takifugu rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + + + L + R I +F+RGD V
Sbjct: 34 RNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ +L GR+ A+D+H NM+L V E T + + ++ + K R I +F+RGD
Sbjct: 29 LRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEIIKTQK-RVIPFLFVRGDG 87
Query: 64 VIIV 67
VI+V
Sbjct: 88 VILV 91
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + + + L + R I +F+RGD V
Sbjct: 34 RNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + + + L + R I +F+RGD
Sbjct: 35 MRNDRELRGRLHAYDQHLNMILGDVEETVTTV-EIDEETYEELYKSTKRNIPMLFVRGDG 93
Query: 64 VIIV 67
V++V
Sbjct: 94 VVLV 97
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMFLR 60
+K +L G++ A+D+H NM+L +V E T + +T + KA + R + +F+R
Sbjct: 27 LKGERELRGKLHAYDQHLNMILGDVEETVTSVEIDEETFEEIIKASEGDSSRMVPYLFVR 86
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 87 GDGVILV 93
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ AFD+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 27 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 85
Query: 64 VIIV 67
V++V
Sbjct: 86 VVLV 89
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 27 RNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDGV 85
Query: 65 IIV 67
++V
Sbjct: 86 VLV 88
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++++ +L G++ AFD+H NM+L +V E+ T + + ++ + K R + +F+RG
Sbjct: 25 VKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTK-RTVPFLFVRG 83
Query: 62 DSVIIV 67
D VI+V
Sbjct: 84 DGVILV 89
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L G++ A+D+H NMVL + E T + + ++ NK R I +F+RGD V
Sbjct: 33 RNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTNK-RNIPMLFVRGDGV 91
Query: 65 IIV 67
I+V
Sbjct: 92 ILV 94
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Danio rerio]
Length = 102
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 39 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 97
Query: 64 VIIV 67
V++V
Sbjct: 98 VVLV 101
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMFLRG 61
+ + +++G++ A+D H NMVL +V E+ T + P TG + K R + +FLRG
Sbjct: 27 RGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDPLTGDEQTK----KTTRRLPLIFLRG 82
Query: 62 DSVIIV 67
D++I+V
Sbjct: 83 DAIILV 88
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NM+L V E T + + ++ K R I +F+RGD
Sbjct: 35 MRNERELKGRLNAYDQHLNMILGEVEETVTSIEIDEETYEEVYRTTK-RNIPMLFVRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 34 RNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 34 RNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC
50439]
Length = 92
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ + L GR+ A+D H NMVL V E+ P +G K P+ +D + +F+RGD +
Sbjct: 27 RGDRYLRGRLVAYDSHLNMVLSEVEEVIE--PPVKEGVKHRRPIRRD--LDTIFVRGDGI 82
Query: 65 IIVLRNP 71
I+V NP
Sbjct: 83 ILV--NP 87
>gi|432110929|gb|ELK34403.1| U6 snRNA-associated Sm-like protein LSm3 [Myotis davidii]
Length = 70
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 59
Query: 64 VIIV 67
V++V
Sbjct: 60 VVLV 63
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|444705548|gb|ELW46970.1| U6 snRNA-associated Sm-like protein LSm3 [Tupaia chinensis]
Length = 70
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 1 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 59
Query: 64 VIIV 67
V++V
Sbjct: 60 VVLV 63
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ +L GR+ A+D+H NM+L V E T + + ++ + K R I +F+RGD
Sbjct: 29 LRGERELRGRLHAYDQHLNMILGEVEETLTTVEIDDETYEEIIKTQK-RVIPFLFVRGDG 87
Query: 64 VIIV 67
+I+V
Sbjct: 88 IILV 91
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ AFD+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAFDQHLNMILGDVEEVITTVEIDDETYEEIVRTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member
[Tribolium castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ ++ GR+ A+D+H NM+L + E T + + ++ K R I +F+RGD
Sbjct: 32 MRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYEEVYRTTK-RNIPMLFVRGDG 90
Query: 64 VIIV 67
VI+V
Sbjct: 91 VILV 94
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC
30864]
Length = 106
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++ + +L GR+ A+D+H NM+L +V E T + + ++ + K R + +F+R
Sbjct: 34 LVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVEIDEETFEEMVKTTK-REVPMLFVR 92
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 93 GDGVILV 99
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKMFLRG 61
+ + +++G++ A+D H NMVL +V E+ T + P TG + K R + +FLRG
Sbjct: 27 RGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTK----KTTRRLPLIFLRG 82
Query: 62 DSVIIV 67
D++I+V
Sbjct: 83 DAIILV 88
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+++ +L GR+ AFD+H NMVL E T + + ++ K R I +F+RGD V
Sbjct: 38 RHDRELRGRLHAFDQHLNMVLGEAEETITTIEVDEETFEEVYKTTK-RTIPMLFVRGDGV 96
Query: 65 IIV 67
I+V
Sbjct: 97 ILV 99
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 34 RNDRELRGRLNAYDQHLNMILGDVEETVTTVEIDEETYEEIYKSTK-RNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NM+L V E T + + ++ K R I +F+RGD
Sbjct: 35 MRNERELKGRLNAYDQHLNMILGEVAETVTSIEIDEETYEEVYRTTK-RNIPMLFVRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica
Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R I +F+RGD
Sbjct: 35 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTIPFLFVRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R I +F+RGD
Sbjct: 29 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTK-RTIPFLFVRGDG 87
Query: 64 VIIV 67
VI+V
Sbjct: 88 VILV 91
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + K + R + +F+RGDS
Sbjct: 28 LRGDRELKGRLHAYDSHCNLVLGDVEETHYMQDEEDEADLKTVS----RKLEMLFVRGDS 83
Query: 64 VIIV 67
V+++
Sbjct: 84 VVLI 87
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ ++ GR+ AFD+H NM+L V E T + + ++ K R I +F+RGD+
Sbjct: 34 MRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEMHKQTK-RQIPMLFVRGDA 92
Query: 64 VIIV 67
+I+V
Sbjct: 93 IILV 96
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 42.7 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++N +L GR+ AFD+H NMVL + E T + + ++ K R I +F+RG
Sbjct: 32 VKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFVRG 90
Query: 62 DSVIIV 67
D VI+V
Sbjct: 91 DGVILV 96
>gi|389629744|ref|XP_003712525.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|351644857|gb|EHA52718.1| hypothetical protein MGG_16841 [Magnaporthe oryzae 70-15]
gi|440488450|gb|ELQ68177.1| hypothetical protein OOW_P131scaffold00266g63 [Magnaporthe oryzae
P131]
Length = 95
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + K + R + +F+RGDS
Sbjct: 28 LRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTVS----RKLEMLFVRGDS 83
Query: 64 VIIV 67
V+++
Sbjct: 84 VVMI 87
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D+H NM+L NV E + K + ++ + N R I +F+RGD
Sbjct: 30 MRQDRELRGKLHAYDQHLNMILSNVEETIKVVEKDEETDEEIVK-NIKRNIDMLFVRGDG 88
Query: 64 VIIV 67
VI++
Sbjct: 89 VILI 92
>gi|367051210|ref|XP_003655984.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
gi|347003248|gb|AEO69648.1| hypothetical protein THITE_2146609 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + K V+K +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVEETIYIVDEDDDEEVKLQTVSKKS--EMLFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L GR+ AFD+H NMVL + E T + + ++ K R I +F+RGD VI+V
Sbjct: 36 ELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTTK-RTIPMLFVRGDGVILV 93
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++ +L G+++ +D HCNMVL + +E L + K K P+ K +F+R
Sbjct: 27 LVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDENSKIKD---PIVKK--TDMVFVR 81
Query: 61 GDSVIIV 67
GDSVI++
Sbjct: 82 GDSVILI 88
>gi|407038130|gb|EKE38950.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 78
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 15/67 (22%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+ ++ +L G++RAFD+H N++L NV E++ E K + PV +++R
Sbjct: 22 FIKLRGGRKLKGKLRAFDQHLNIILTNVSEIYQE-------KTRTFPV--------LYIR 66
Query: 61 GDSVIIV 67
GD VI++
Sbjct: 67 GDLVILI 73
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ N +L G + A+D H NMVL NV E + E + + K R I +FLRGD +
Sbjct: 24 RGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEKKLKKRR-IEMLFLRGDLI 82
Query: 65 IIV 67
I+V
Sbjct: 83 ILV 85
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 29 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTVPFLFVRGDG 87
Query: 64 VIIV 67
VI+V
Sbjct: 88 VILV 91
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|253748557|gb|EET02611.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia
intestinalis ATCC 50581]
Length = 126
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++NN+ + G + +FD H N++L N E TG P+N RF +F+RGDS
Sbjct: 69 LQNNSSVTGLLASFDEHMNIILINAEE-------TGH------PLN--RFFPLLFIRGDS 113
Query: 64 VIIVLR 69
+I V R
Sbjct: 114 IIFVTR 119
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F++GD
Sbjct: 30 MRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVQGDG 88
Query: 64 VIIV 67
V++V
Sbjct: 89 VVLV 92
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 68
+L+G ++AFD HCN+VL + E +L G+ K+ N + +F+RGDSV ++
Sbjct: 27 ELIGTLQAFDSHCNIVLSDAVETIYQLE---SGELKSTEKNSEM----IFVRGDSVTLIT 79
Query: 69 RNP 71
P
Sbjct: 80 TPP 82
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L V E+ T + + ++ + ++ R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGEVEEVTTSVEIDDETYEEIVRTSR-RTVPYLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F+RGD
Sbjct: 29 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RAIPFLFVRGDG 87
Query: 64 VIIV 67
VI+V
Sbjct: 88 VILV 91
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM-FLRGD 62
++ + +L GR+ A+D HCN+VL V E ++ + G+ V + S+M F+RGD
Sbjct: 31 LRGDRELQGRLHAYDSHCNLVLGEVTETIYQVAEEAGGED----VRTLKKQSEMLFVRGD 86
Query: 63 SVIIV 67
SV+++
Sbjct: 87 SVVLI 91
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F+RGD
Sbjct: 29 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFVRGDG 87
Query: 64 VIIV 67
VI+V
Sbjct: 88 VILV 91
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNERELRGRLNAYDQHLNMILGDVEETVTTVEIDEETFEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
VI+V
Sbjct: 92 VILV 95
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ ++ GR+ AFD+H NM+L V E T + + ++ K R I +F+RGD+
Sbjct: 67 MRNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEMHKQTK-RQIPMLFVRGDA 125
Query: 64 VIIV 67
+I+V
Sbjct: 126 IILV 129
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ ++ GR+ AFD+H NM+L V E T + + ++ K R I +F+RGD++
Sbjct: 68 RNDREVRGRLHAFDQHLNMILSQVEETVTTVELDEENFEEMHKQTK-RQIPMLFVRGDAI 126
Query: 65 IIV 67
I+V
Sbjct: 127 ILV 129
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ AFD+H N+VL + E T + + ++ K R I +F+RGD
Sbjct: 34 MRNERELRGRLHAFDQHLNIVLGDAEETVTTVEIDEETYEEVYKTAK-RTIPMLFVRGDG 92
Query: 64 VIIV 67
VI+V
Sbjct: 93 VILV 96
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N +L G++ A+D+H NMVL + E T + + ++ K R I +F+RGD V
Sbjct: 33 RNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYRTTK-RTIPMLFVRGDGV 91
Query: 65 IIV 67
I+V
Sbjct: 92 ILV 94
>gi|302408451|ref|XP_003002060.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
gi|261358981|gb|EEY21409.1| small nuclear ribonucleoprotein Sm D2 [Verticillium albo-atrum
VaMs.102]
Length = 96
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL--PKTG 39
++S++NN +LL RV+AFDRHCNM + + + E P+ G
Sbjct: 49 LISIRNNRKLLARVKAFDRHCNMCVPPLHRVSPEASSPRPG 89
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+++G++ A+D HCN+VL + E + + + + K + KDR + ++LRGDSVI+V
Sbjct: 27 EIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VYLRGDSVILV 79
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 6/59 (10%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+++G++ A+D HCN+VL + E + + + + K + KDR + ++LRGDSVI+V
Sbjct: 142 EIVGKLHAYDNHCNLVLGDAVETISTVDENNELKTQT----KDRPM--VYLRGDSVILV 194
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Nomascus leucogenys]
Length = 102
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + +T + + + + R I +F+ GD
Sbjct: 33 MRNDRELRGRLHAYDQHLNMILGDVEETVTTI-ETDEETYEEIYKSTKRNIPMLFVWGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 10 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
L G ++AFD HCN+VL + E EL G+ +K++ +F+RGDSV ++
Sbjct: 27 LTGTLQAFDSHCNIVLSDAVETIYELDGNGELS------SKEKKSEMIFVRGDSVTLI 78
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ V K +F+RGDS
Sbjct: 32 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDANEEEVVRTVKKQS--EMLFVRGDS 89
Query: 64 VIIV 67
V+++
Sbjct: 90 VVLI 93
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N L G++ A+D+H NMVL +V E T + + ++ K R I +F+RGD V
Sbjct: 31 RNERVLRGKLHAYDQHLNMVLGDVEETVTTVEIDEETYEEIYKTTK-RSIPMLFVRGDGV 89
Query: 65 IIV 67
I+V
Sbjct: 90 ILV 92
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 41.6 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK ++ R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKTNEERDERRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R I +F+RG
Sbjct: 50 VKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFVRG 108
Query: 62 DSVIIV 67
D VI+V
Sbjct: 109 DGVILV 114
>gi|440294421|gb|ELP87438.1| snrnp sm protein, putative [Entamoeba invadens IP1]
Length = 79
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 15/67 (22%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++ N QL G++RAFD+H N+VL TE+ +T + PV +++R
Sbjct: 22 LVKLRGNRQLKGKLRAFDQHLNLVL-------TEVTETYNSVSRDFPV--------LYIR 66
Query: 61 GDSVIIV 67
GD V+IV
Sbjct: 67 GDLVVIV 73
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 41.6 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD--RFISKMFL 59
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK A +++ R + + L
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKPAEGADREDRRTLGLVLL 76
Query: 60 RGDSVI 65
RG+ VI
Sbjct: 77 RGEEVI 82
>gi|345571011|gb|EGX53826.1| hypothetical protein AOL_s00004g485 [Arthrobotrys oligospora ATCC
24927]
Length = 93
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL V E + + + + N + +F+RGDS
Sbjct: 30 LRGDRELRGRLHAYDSHCNLVLGEVEETIYVVDEDDDDTIRTVKKNSE----MLFVRGDS 85
Query: 64 VIIV 67
V+I+
Sbjct: 86 VVII 89
>gi|259489765|tpe|CBF90306.1| TPA: U6 small nuclear ribonucleoprotein (Lsm3), putative
(AFU_orthologue; AFUA_5G12570) [Aspergillus nidulans
FGSC A4]
Length = 96
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K + +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHIRTIKKQEEM--LFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++ + QL G + A+D+H NMVL NV E + + ++ + K R + +++R
Sbjct: 22 LVKMRGDRQLEGTLHAYDQHMNMVLSNVVETLATVDVDDETGEELVKTAK-RVLPMLYVR 80
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 81 GDGVILV 87
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 8/56 (14%)
Query: 12 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
G+++ +D HCNM+L + E ++P +G++ PV K+ +F+RGDSVI++
Sbjct: 37 GKLQGYDSHCNMILSDAVEYIYDVP---EGQE---PVTKN--TDMVFVRGDSVILI 84
>gi|400599588|gb|EJP67285.1| U6 snRNA-associated Sm-like protein LSm3 [Beauveria bassiana
ARSEF 2860]
Length = 95
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D HCN+VL V E + + + + K++ R +F+RGDS
Sbjct: 30 LRGDRELKGKLHAYDSHCNLVLGEVEETIYGVEEDDEEEAKSVS----RKSEMLFVRGDS 85
Query: 64 VIIV 67
V+++
Sbjct: 86 VVLI 89
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+N+ +L GR+ A+D++ NM+L +V E T + + ++ K R I +F+RGD V
Sbjct: 34 RNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEIYKSMK-RNIPMLFVRGDGV 92
Query: 65 IIV 67
++V
Sbjct: 93 VLV 95
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRATR-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|145249892|ref|XP_001401285.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS
513.88]
gi|134081970|emb|CAK46655.1| unnamed protein product [Aspergillus niger]
Length = 96
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K + +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQETLRTIKKQEEM--LFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWT 33
+ KN +L+GR++AFD HCNMVL V E T
Sbjct: 24 LKCKNGRELVGRLQAFDEHCNMVLSEVTETIT 55
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E+ T + + ++ + + R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D++ NM+L +V E T + + ++ K R I +F RGD
Sbjct: 33 MRNDQELRGRLHAYDQYSNMILGDVEETVTTIEIDEETYEEIYKSMK-RNIPMLFFRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N +L GR+ A+D++ NM+L V E T + + ++ K R I +F+RGD
Sbjct: 35 MRNERELKGRLNAYDQYLNMILGEVEETVTSIEIDEETYEEVYRTTK-RNIPMLFVRGDG 93
Query: 64 VIIV 67
VI+V
Sbjct: 94 VILV 97
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLRGDS 63
+N+ +L G++ AFD+H NMVL +V E T + + ++ VNK R + +F+RGD
Sbjct: 22 RNDRELRGKLHAFDQHLNMVLSDVEETITSTEEDDETGEEI--VNKRTRSVGMLFVRGDI 79
Query: 64 VIIV 67
V++V
Sbjct: 80 VVLV 83
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ + +L GR+ A+D HCN+VL +V E ++ + + V K + +F+
Sbjct: 23 ILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDDDDQEPRVRTVKKQSEM--LFI 80
Query: 60 RGDSVIIV 67
RGDSV+++
Sbjct: 81 RGDSVVLI 88
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ +L G++ A+D+H NMVL +V E T + + ++ + K R + +F+RGD
Sbjct: 34 LRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIKRRK-RTVEMLFVRGDG 92
Query: 64 VIIV 67
VI+V
Sbjct: 93 VILV 96
>gi|221053504|ref|XP_002258126.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807959|emb|CAQ38663.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 91
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMW--TELPKTGKGKKKALPVNKDRFISKMFL 59
+ K + ++ G++ A+D H NM+L N RE + T + + KK +R + +F+
Sbjct: 24 LKCKGDREIRGKLDAYDNHLNMILSNARETYKQTVMENDEESVKKI-----ERNLDMVFV 78
Query: 60 RGDSVIIV 67
RGDS+I+V
Sbjct: 79 RGDSIILV 86
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + L G++ AFDRH N+VL E PK G+ +A PV + R + + LR
Sbjct: 11 VTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSLGLVILR 70
Query: 61 GDSVI 65
G++V+
Sbjct: 71 GETVV 75
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D+H NM+L +V E + K + ++ + N R I +F+RGD
Sbjct: 28 MRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIR-NIKRNIKMLFIRGDG 86
Query: 64 VIIV 67
VI++
Sbjct: 87 VILI 90
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 40.8 bits (94), Expect = 0.090, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKNNEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|389582457|dbj|GAB65195.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium cynomolgi
strain B]
Length = 91
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 17/73 (23%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM---- 57
+ K + ++ G++ A+D H NM+L N RE + K+++ N + I K+
Sbjct: 24 LKCKGDREIRGKLDAYDNHLNMILSNARETY----------KQSVTENDEESIKKIERNL 73
Query: 58 ---FLRGDSVIIV 67
F+RGDS+I+V
Sbjct: 74 DMVFVRGDSIILV 86
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + QL G + A+D H N++L +V E M ++P+ + + V K R + +F+RG
Sbjct: 26 LRGDRQLEGVLHAYDGHMNLILSDVEETIMIVDVPEGAPESQGTVNVAK-RKMGMLFVRG 84
Query: 62 DSVIIV 67
D VI+V
Sbjct: 85 DGVILV 90
>gi|154283195|ref|XP_001542393.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410573|gb|EDN05961.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 98
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 31 LRGDRELRGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|295670537|ref|XP_002795816.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284901|gb|EEH40467.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 99
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K + +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEREMIKTIKKQEEM--LFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KK + + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTSEEREERRTLGLVLLRG 77
Query: 62 DSVI 65
+ VI
Sbjct: 78 EEVI 81
>gi|449446417|ref|XP_004140968.1| PREDICTED: LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like
protein LSm3-like [Cucumis sativus]
Length = 101
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+ ++++ +L G++ A+D+H NM+L +V E T + + ++ + ++ R + +F+R
Sbjct: 29 LXPLRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSR-RTVPFLFVR 87
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 88 GDGVILV 94
>gi|225561720|gb|EEH10000.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus G186AR]
gi|240275325|gb|EER38839.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H143]
gi|325091160|gb|EGC44470.1| U6 snRNP-associated protein Lsm3 [Ajellomyces capsulatus H88]
Length = 98
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEVIKTIKKQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKNNEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKNNEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKNNEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|429964879|gb|ELA46877.1| hypothetical protein VCUG_01651 [Vavraia culicis 'floridensis']
Length = 92
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++++++N +L G VR D H NM+L +V E+ K KG KK +R I + LR
Sbjct: 24 IVNLRSNRKLCGIVRVIDHHFNMILTDVTEIRKTKSK-NKGVKKREGTTVERKIKCLVLR 82
Query: 61 GDSVIIV 67
GD+VI V
Sbjct: 83 GDNVISV 89
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKNNEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + +L G + A+D H N++L +V E M + P+ G + + + K R + +F+RG
Sbjct: 27 LRGDRELTGILHAYDGHMNLILSDVEETIMIVDQPEGGPEEHSTVNIAK-RKMDMLFVRG 85
Query: 62 DSVIIV 67
D VI+V
Sbjct: 86 DGVILV 91
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++V + Q++GR AFDRH N+VL + E PK G ++ + R + + LRG
Sbjct: 18 VTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDR---EQRRVLGLVILRG 74
Query: 62 DSVI 65
D V+
Sbjct: 75 DEVV 78
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H NM+L +V E T + + ++ + ++ R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSR-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|358374818|dbj|GAA91407.1| U6 small nuclear ribonucleoprotein [Aspergillus kawachii IFO
4308]
Length = 96
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEILRTIKKQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGKKKALPVNKDRFISKMFLRG 61
+ + +L G ++A+D+H NMVL +V E T EL P+T + K R I +F+RG
Sbjct: 24 RGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEELIK----QSKRTIEMLFVRG 79
Query: 62 DSVIIV 67
D VI+V
Sbjct: 80 DVVILV 85
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D+H NM+L +V E + K + ++ + N R I +F+RGD
Sbjct: 28 MRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIR-NIKRNIKMLFVRGDG 86
Query: 64 VIIV 67
VI++
Sbjct: 87 VILI 90
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK----MFLRGDSV 64
+L G ++AFD HCN+VL + E EL RF +K +F+RGDSV
Sbjct: 26 KLTGTLQAFDSHCNIVLSDAEETIYELVDGNL-----------RFETKTSEMIFVRGDSV 74
Query: 65 IIVLRNPK 72
+V P+
Sbjct: 75 TLVTAQPE 82
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L G++ ++D+H NM+L V E+ T + ++ + NK R + +F+RGD+
Sbjct: 45 LRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEETYEEIIKSNK-RSVPYLFVRGDA 103
Query: 64 VIIV 67
V ++
Sbjct: 104 VTLI 107
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ + +L GR+ A+D HCN+VL +V E ++ + + + V K + +F+
Sbjct: 23 IVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEEDDDQEPRVRTVKKQSEM--LFV 80
Query: 60 RGDSVIIV 67
RGDSV+++
Sbjct: 81 RGDSVVLI 88
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD-RFISKMFLR 60
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK +D R + + LR
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKTTDGDREDRRTLGLVLLR 76
Query: 61 GDSVI 65
G+ VI
Sbjct: 77 GEEVI 81
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G+++++D H N+VLE+ E++ P + R + + +R
Sbjct: 18 LVKLKGNKEVRGKLKSYDHHLNIVLEDAEELF--------------PDGQARKLGTVIIR 63
Query: 61 GDSVIIV 67
GD+VII+
Sbjct: 64 GDNVIII 70
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++ + ++ G++ A+D+H NM+L +V E T + + ++ + K R + +F+RG
Sbjct: 25 VKLRGDREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIVKTTK-RAVRYLFVRG 83
Query: 62 DSVIIV 67
D+V +V
Sbjct: 84 DAVTLV 89
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L GR+ A+D+H NM+L +V E T + + ++ K R I +F+ GD
Sbjct: 33 LRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVWGDC 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|156089511|ref|XP_001612162.1| LSM domain containing protein [Babesia bovis]
gi|154799416|gb|EDO08594.1| LSM domain containing protein [Babesia bovis]
Length = 89
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISKMFL 59
+ K +++G++ A+D HCNM+L + E +T EL T + + +KD + +F+
Sbjct: 19 LKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEVTTI-TSKDSGV--VFV 75
Query: 60 RGDSVIIV 67
RGD++I++
Sbjct: 76 RGDALILL 83
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELP---KTGKGKKKALPVNKDRFISKM 57
++ ++ + +L G+++AFD+H N+VL +V E ++ +TG+ KA+ R + +
Sbjct: 18 LVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVEVDDETGEELIKAVK----RKMPML 73
Query: 58 FLRGDSVIIV 67
F+RGD VI+V
Sbjct: 74 FVRGDGVILV 83
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 10 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
L+G ++AFD HCN+VL + E EL G + + +R +F+RGD+V ++
Sbjct: 28 LVGTLQAFDSHCNIVLSDAIETIYELDDEGDLQ------SVERNSEMIFVRGDTVTLI 79
>gi|327356944|gb|EGE85801.1| GTP-binding protein AGP-1 [Ajellomyces dermatitidis ATCC 18188]
Length = 98
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYIVEEDESEQEIIKTIKKQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|241959048|ref|XP_002422243.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
gi|223645588|emb|CAX40247.1| U6 snRNA-associated Sm-like protein, putative [Candida
dubliniensis CD36]
Length = 96
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA-LPVNKDRFISKMFL 59
++ ++ +L G+++ +D HCNMVL + +E + G + + P+ K + +F+
Sbjct: 27 LVKLRGARELKGKLQGYDSHCNMVLSDAQETIYTSNEGGDSEDSSKEPIVKKT--AMVFV 84
Query: 60 RGDSVIIV 67
RGDSVI++
Sbjct: 85 RGDSVILI 92
>gi|238880144|gb|EEQ43782.1| hypothetical protein CAWG_02031 [Candida albicans WO-1]
Length = 96
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 9 QLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L G+++ +D HCNMVL + E ++T P+ K + +F+RGDSVI++
Sbjct: 35 ELKGKLQGYDSHCNMVLSDAEETIYTSNEDDDSENTSEEPIVKKT--AMVFVRGDSVILI 92
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E P GK + R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGGDREDRRTLGLVLLRG 78
Query: 62 DSVI 65
+ VI
Sbjct: 79 EEVI 82
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWT--EL-PKTGKGKKKALPVNKDRFISKMFLRG 61
+ + +L G ++A+D+H NMVL +V E T EL P+T + K R I +F+RG
Sbjct: 24 RGDRELRGVLQAYDQHLNMVLSDVEETITVQELDPETYEELIK----QSKRTIEMLFVRG 79
Query: 62 DSVIIV 67
D VI+V
Sbjct: 80 DVVILV 85
>gi|71417383|ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70875103|gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 7 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 66
N L+ V AFD+H N+VL +V EL K + K+R I MFLRG SV+
Sbjct: 54 NKSLVATVVAFDKHFNLVLRDV----VELAMVNKQQ-------KERSIRNMFLRGGSVVF 102
Query: 67 VLRNP 71
+++ P
Sbjct: 103 IVKLP 107
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KK + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGSKKTKEDREERRTLGLVLLRG 77
Query: 62 DSVI 65
+ VI
Sbjct: 78 EEVI 81
>gi|71406106|ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70869094|gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 7 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 66
N L+ V AFD+H N+VL +V EL K + K+R I MFLRG SV+
Sbjct: 54 NKSLVATVVAFDKHFNLVLRDV----VELAMVNKEQ-------KERSIRNMFLRGGSVVF 102
Query: 67 VLRNP 71
+++ P
Sbjct: 103 IVKLP 107
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D+H NM+L +V E + K + ++ + K R I +F+RGD
Sbjct: 28 MRQDRELRGKLHAYDQHLNMILSDVEETIRVVEKDEETDEEIVKSIK-RKIKMLFVRGDG 86
Query: 64 VIIV 67
VI++
Sbjct: 87 VILI 90
>gi|440637312|gb|ELR07231.1| hypothetical protein GMDG_02458 [Geomyces destructans 20631-21]
Length = 98
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + + ++K +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVVETVYVVDEDDEDGETLKTIHKKS--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis
subvermispora B]
Length = 184
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + +G++ AFDRH N+VL E PK G+ +A PV + R + + LR
Sbjct: 21 VTINDGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGETEAGPVQEMKRTLGLVILR 80
Query: 61 GDSVI 65
G++V+
Sbjct: 81 GETVV 85
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KK + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGLVLLRG 77
Query: 62 DSVI 65
+ VI
Sbjct: 78 EEVI 81
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ + +L GR+ A+D HCN+VL +V E ++ + + + K + +F+
Sbjct: 23 IVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDDDDQEPRVRTIKKQSEM--LFI 80
Query: 60 RGDSVIIV 67
RGDSV+++
Sbjct: 81 RGDSVVLI 88
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ + +L G + A+D+H NMVL V E T + + + + + R + +F+RGD+V
Sbjct: 24 RGDRELRGLLHAYDQHLNMVLSEVEETVT-VQELDEETYEEIIKQSKRQVEMLFIRGDAV 82
Query: 65 IIV 67
I+V
Sbjct: 83 ILV 85
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ Q++G+ AFD+ N+V+ + E +PK KG++ V + R + + +RG
Sbjct: 15 ITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEE----VEQKRSLGFLLIRG 70
Query: 62 DSVI-IVLRNP 71
+++I IV+ P
Sbjct: 71 ENIISIVVEGP 81
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ ++ G+++ +D HCNMVL + E ++ E +GK + +F+
Sbjct: 26 LVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQDKPQGKSTDM----------VFI 75
Query: 60 RGDSVIIV 67
RGDSVI++
Sbjct: 76 RGDSVILI 83
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++ ++ ++GR AFDRH N+VL + E PK G+ +++ ++ R + + LRG
Sbjct: 19 VTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEER---DQRRVLGLVLLRG 75
Query: 62 DSVI 65
D VI
Sbjct: 76 DEVI 79
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KK + R + + LRG
Sbjct: 19 VTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGLVLLRG 77
Query: 62 DSVI 65
+ VI
Sbjct: 78 EEVI 81
>gi|50303649|ref|XP_451766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640898|emb|CAH02159.1| KLLA0B05203p [Kluyveromyces lactis]
Length = 83
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+++ +L+G ++AFD HCN+VL + +E EL +G K +RF +F+RG
Sbjct: 21 LRDARELVGTLQAFDSHCNIVLSDSKETIYELV---EGDLK----TTERFSEMIFVRGGL 73
Query: 64 VIIV 67
V +V
Sbjct: 74 VALV 77
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
++V + +G++ AFDRH N+VL E PK G+ +A P + R + + LR
Sbjct: 11 VTVNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRTLGLVILR 70
Query: 61 GDSVI 65
G++V+
Sbjct: 71 GETVV 75
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 102
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++N+ +L R+ A+D+H NM+ +V E T + + ++ K R I +F+RGD
Sbjct: 33 MRNDRELRSRLHAYDQHLNMIYGDVEETVTTIEIDEETYEEIYKSTK-RNIPMLFVRGDG 91
Query: 64 VIIV 67
V++V
Sbjct: 92 VVLV 95
>gi|296423190|ref|XP_002841138.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637372|emb|CAZ85329.1| unnamed protein product [Tuber melanosporum]
Length = 95
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L GR+ A+D HCN+VL +V E ++T G ++ + +F+RGD
Sbjct: 29 LRGDRELRGRLHAYDSHCNLVLGDVEETIYT----VGDDEEDDSVKTIKKQSEMLFVRGD 84
Query: 63 SVIIV 67
SV+++
Sbjct: 85 SVVLI 89
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFD+H N+VL + E K GKG+++ + R + + LRG
Sbjct: 8 VTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEER----EEKRSLGLVILRG 63
Query: 62 DSVI 65
+SV+
Sbjct: 64 ESVV 67
>gi|300120504|emb|CBK20058.2| Like-Sm ribonucleoprotein, core [Blastocystis hominis]
Length = 458
Score = 39.7 bits (91), Expect = 0.25, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTEL---PKTGKGKKKALPVNKDRFISKM 57
++ ++ ++ G++ A+D+H NMV+ N +E T + P+T KK N R +
Sbjct: 387 VIKCRHGREIRGKLLAYDQHLNMVVSNAKETQTIVTVDPETNNEVKK----NVVRNFEAL 442
Query: 58 FLRGDSVIIV 67
+LRGD+VI++
Sbjct: 443 YLRGDAVILI 452
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++ + L G++ AFDRH N+VL + E PK G++ A R + + LRG
Sbjct: 11 VTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLVILRG 70
Query: 62 DSVI 65
++V+
Sbjct: 71 ETVV 74
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ L G++ AFDRH N+VL + E PK G++ A R + + LRG
Sbjct: 11 VTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTLGLVILRG 70
Query: 62 DSVIIV 67
++V+ +
Sbjct: 71 EAVVSI 76
>gi|212533023|ref|XP_002146668.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
gi|210072032|gb|EEA26121.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
marneffei ATCC 18224]
Length = 96
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQE--EMLFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|242777144|ref|XP_002478974.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722593|gb|EED22011.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 96
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETVKTIRKQE--EMLFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + +A+ + +F+RGDS
Sbjct: 31 LRGDRELAGRLHAYDSHCNLVLGDVTETVYVWDDEDEDNVRAVKKQSE----MLFVRGDS 86
Query: 64 VIIV 67
V+++
Sbjct: 87 VVLI 90
>gi|326516156|dbj|BAJ88101.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 123
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 16 AFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
A+D+H NM+L +V E+ T + + ++ + +K R I +F+RGD VI+V
Sbjct: 66 AYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSK-RTIPYLFVRGDGVILV 116
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 68
++ GR++ +D HCNMVL + E +L G+ V K + F+RGDSVI++
Sbjct: 34 EMKGRLQGYDSHCNMVLSDAVEYIYDL---GEEVNSNPTVKKSEMV---FVRGDSVILI- 86
Query: 69 RNP 71
NP
Sbjct: 87 -NP 88
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ + +L GR+ A+D HCN+VL +V E ++ + + + V K +F+
Sbjct: 23 IVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVRTVKKQS--EMLFV 80
Query: 60 RGDSVIIV 67
RGDSV+++
Sbjct: 81 RGDSVVLI 88
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
Length = 179
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++ + QL+G++ AFDRH N+VL E PK G++ R + + LRG
Sbjct: 21 VTINDGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGLVILRG 80
Query: 62 DSVI 65
++V+
Sbjct: 81 ETVV 84
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++ + L G++ AFDRH N+VL + E PK G++ A R + + LRG
Sbjct: 21 VTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLVILRG 80
Query: 62 DSVIIV 67
++V+ +
Sbjct: 81 ETVVSI 86
>gi|367026602|ref|XP_003662585.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
gi|347009854|gb|AEO57340.1| hypothetical protein MYCTH_2303370 [Myceliophthora thermophila
ATCC 42464]
Length = 96
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + K + + +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVDDEDDEDVKTVSKKSE----MLFVRGDS 85
Query: 64 VIIV 67
V+++
Sbjct: 86 VVLI 89
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + + + + +F+RGDS
Sbjct: 31 LRGDRELQGRLHAYDSHCNLVLGDVTETVYVVDEEDEDNVRTVKKQSE----MLFVRGDS 86
Query: 64 VIIV 67
V+++
Sbjct: 87 VVLI 90
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris
suum]
Length = 165
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++++++ +G RAFD+H N++L E PK G KK+ P + R + + LRG
Sbjct: 19 VALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPG---KKSAPEEEMRTLGLVLLRG 75
Query: 62 DSVI 65
+ ++
Sbjct: 76 EHIV 79
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++ ++ G++ A+D+H NM+L +V E T + + ++ + K R + +F+RG
Sbjct: 25 VKLRGEREIRGKLHAYDQHLNMILGDVEETITTVEIDDETYEEIIKTTK-RAVRFLFVRG 83
Query: 62 DSVIIV 67
D+V +V
Sbjct: 84 DAVTLV 89
>gi|115387369|ref|XP_001211190.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195274|gb|EAU36974.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 97
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + ++ + K +F+RGDS
Sbjct: 32 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDDENEEETIRTIKKQE--EMLFVRGDS 89
Query: 64 VIIV 67
V+++
Sbjct: 90 VVLI 93
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + ++ V K + +F+RGDS
Sbjct: 31 LRGDRELQGRLHAYDSHCNLVLGDVSETVYVVDEEDE-QENVRTVKKQSEM--LFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + L G++ AFDRH N+VL E PK G+ +A P + R + + LR
Sbjct: 21 VTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAGPEQEMKRTLGLVILR 80
Query: 61 GDSVIIV 67
G++V+ +
Sbjct: 81 GETVVSI 87
>gi|302309894|ref|XP_002999599.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049204|emb|CAR58072.1| unnamed protein product [Candida glabrata]
Length = 85
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 12 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
G ++AFD HCN+VL + E EL G+ K +++R +F+RGDSV ++
Sbjct: 30 GVLQAFDSHCNIVLSDAVETIYELV---DGELK----SQERASEMIFVRGDSVTLI 78
>gi|167375897|ref|XP_001733767.1| snrnp sm protein [Entamoeba dispar SAW760]
gi|165904941|gb|EDR30063.1| snrnp sm protein, putative [Entamoeba dispar SAW760]
Length = 99
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 15/59 (25%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L G++RAFD+H N++L +V E + E K + PV +++RGD V+++
Sbjct: 51 KLKGKLRAFDQHLNIILTDVNETYQE-------KTRTFPV--------LYVRGDLVVLI 94
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E P GK ++ + R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEER---EERRTLGLVLLRG 75
Query: 62 DSVI 65
+ VI
Sbjct: 76 EEVI 79
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKINEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|308161048|gb|EFO63510.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
P15]
Length = 132
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++NN+ + G + +FD H N++L N E L +RF + +RGDS
Sbjct: 75 LQNNSSITGLLASFDEHMNLILINAEETGHSL---------------NRFFPLLVIRGDS 119
Query: 64 VIIVLR 69
+I V R
Sbjct: 120 IIFVTR 125
>gi|9837176|gb|AAG00462.1|AF280394_1 Sm-D2 [Trypanosoma brucei]
gi|261326673|emb|CBH09635.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei gambiense
DAL972]
Length = 111
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 17/71 (23%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN---KDRFISKMFLRG 61
+ N L+ V AFD+H N+VL + E+ VN K+R I MFLRG
Sbjct: 52 RYNKSLVATVVAFDKHFNLVLRDAVELTM--------------VNNEQKERSIRNMFLRG 97
Query: 62 DSVIIVLRNPK 72
SV+ ++R P+
Sbjct: 98 ASVVFIVRLPQ 108
>gi|159118879|ref|XP_001709658.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
gi|157437775|gb|EDO81984.1| U6 snRNA-associated Sm-like protein LSm3, putative [Giardia lamblia
ATCC 50803]
Length = 126
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++NN+ + G + +FD H N++L N E L +RF + +RGDS
Sbjct: 69 LQNNSSITGLLASFDEHMNLILINAEETGHSL---------------NRFFPLLVIRGDS 113
Query: 64 VIIVLR 69
+I V R
Sbjct: 114 IIFVTR 119
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L G ++AFD HCN+VL + E EL G+ K+ N + +F+RGDSV ++
Sbjct: 27 ELSGILQAFDSHCNIVLSDAIETKYELV---DGELKSTERNSEM----LFVRGDSVTLI 78
>gi|84043878|ref|XP_951729.1| small nuclear ribonucleoprotein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|33348718|gb|AAQ16042.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358544|gb|AAX79005.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma brucei]
Length = 111
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 17/71 (23%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVN---KDRFISKMFLRG 61
+ N L+ V AFD+H N+VL + E+ VN K+R I MFLRG
Sbjct: 52 RYNKSLVATVVAFDKHFNLVLRDAVELTM--------------VNNEQKERSIRNMFLRG 97
Query: 62 DSVIIVLRNPK 72
SV+ ++R P+
Sbjct: 98 ASVVFIVRLPQ 108
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L G ++AFD HCN+VL + E EL G+ K+ ++ +F+RGDSV ++
Sbjct: 27 ELTGTLQAFDSHCNIVLSDAVESIYELV---DGELKS----TEKSSEMVFVRGDSVTLI 78
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + +G++ AFDRH N+VL E PK G+ +A P+ + R + + LR
Sbjct: 21 VTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPMQEMKRTLGLVILR 80
Query: 61 GDSVI 65
G++V+
Sbjct: 81 GETVV 85
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETLRTIKKQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + + + + +F+RGDS
Sbjct: 31 LRGDRELQGRLHAYDSHCNLVLGDVTETVYLVDEEDEDNVRTVKKQSE----MLFVRGDS 86
Query: 64 VIIV 67
V+++
Sbjct: 87 VVLI 90
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + ++ + K +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEEETLRTIKKQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 38.9 bits (89), Expect = 0.44, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ QL+G+ AFDRH N+VL + E + +LP KGKK R + + LRG
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKINEEREDRRTLGLVLLRG 76
Query: 62 DSVI 65
+ VI
Sbjct: 77 EEVI 80
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
+ ++ + L G + A+D H N+VL V E + G+ A P + R +F+R
Sbjct: 25 FIKLRGDRTLTGNLHAYDAHMNLVLSQVEE-NIHIVDVGEDGTAAPPRIERRGFEMLFIR 83
Query: 61 GDSVII 66
GDSVI+
Sbjct: 84 GDSVIL 89
>gi|171680906|ref|XP_001905397.1| hypothetical protein [Podospora anserina S mat+]
gi|170940411|emb|CAP65637.1| unnamed protein product [Podospora anserina S mat+]
Length = 97
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L GR+ A+D HCN+VL +V E ++ + + K + R +F+RGD
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEDEENDEEVKTIS----RKSEMLFVRGD 85
Query: 63 SVIIV 67
SV+++
Sbjct: 86 SVVLI 90
>gi|123493455|ref|XP_001326296.1| Sm protein [Trichomonas vaginalis G3]
gi|121909208|gb|EAY14073.1| Sm protein [Trichomonas vaginalis G3]
Length = 84
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
V+ +L G + A+D H N++L +V E L K G K +PV +++ I +F+RGD
Sbjct: 23 VQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNG----KFIPVRQNQ-IDMLFVRGDR 77
Query: 64 VI 65
++
Sbjct: 78 IV 79
>gi|320587366|gb|EFW99846.1| u6 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 99
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + + + + R +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVEETIYITDEDDEDESEQEVRTVSRKSEMLFVRGDS 89
Query: 64 VIIVLRNPK 72
V+++ P+
Sbjct: 90 VVLISPVPQ 98
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L+G ++AFD HCN+VL + E EL G+ K+ ++ +F+RGD+V ++
Sbjct: 27 ELVGILQAFDSHCNIVLSDAVETIYELV---DGELKS----NEKTSEMLFVRGDTVTLI 78
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + +G++ AFDRH N+VL E PK G+ +A P+ + R + + LR
Sbjct: 21 VTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAGPMQEMKRTLGLVILR 80
Query: 61 GDSVI 65
G++V+
Sbjct: 81 GETVV 85
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ + +L GR+ A+D HCN+VL +V E ++ + + + V K + +F+
Sbjct: 23 IVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEEEDLEPRVRTVKKQSEM--LFV 80
Query: 60 RGDSVIIV 67
RGDSV+++
Sbjct: 81 RGDSVVLI 88
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 8 TQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
T++ G++R FD N+V+++ E+ + PK+GK +K F+ ++ L+GD++ +V
Sbjct: 37 TRIRGKIRGFDEFMNVVIDDAFEIAVD-PKSGKESD-----DKAVFLGRIMLKGDNITLV 90
Query: 68 LRN 70
+ N
Sbjct: 91 VAN 93
>gi|255714250|ref|XP_002553407.1| KLTH0D16082p [Lachancea thermotolerans]
gi|238934787|emb|CAR22969.1| KLTH0D16082p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
++ G ++AFD HCN+VL N E EL G+ K+ + +F+RGDSV ++
Sbjct: 25 EMTGVLQAFDSHCNIVLSNATETIYELV---DGELKS----STKGSEMVFVRGDSVTLI 76
>gi|253744911|gb|EET01046.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia
intestinalis ATCC 50581]
Length = 83
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +++ + G ++A+DRH N+V E W E K KK+ LR
Sbjct: 24 LVQLRSGHFIAGVLKAYDRHLNLVFSEATETWEENGIEYKEDKKSF-----------MLR 72
Query: 61 GDSVIIVLRN 70
GD+VI+V+ N
Sbjct: 73 GDNVIMVVSN 82
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 44
+++++ QL+G+ AFDRH N+VL + E+ PK GK +++
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEE 61
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L GR+ A+D HCN+VL +V E ++ + + K + R +F+RGD
Sbjct: 30 LRGDRELKGRLHAYDSHCNIVLGDVEETIYVVDEDDDEEEAKTIS----RKSEMLFVRGD 85
Query: 63 SVIIV 67
SV+++
Sbjct: 86 SVVLI 90
>gi|156097859|ref|XP_001614962.1| U6 snRNA-associated Sm-like protein LSm3 [Plasmodium vivax Sal-1]
gi|148803836|gb|EDL45235.1| U6 snRNA-associated Sm-like protein LSm3, putative [Plasmodium
vivax]
Length = 91
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTE--LPKTGKGKKKALPVNKDRFISKMFL 59
+ K + ++ G++ A+D H NM+L N E + + + + KK +R + +F+
Sbjct: 24 LKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESVKKI-----ERNLDMVFV 78
Query: 60 RGDSVIIV 67
RGDS+I+V
Sbjct: 79 RGDSIILV 86
>gi|209879574|ref|XP_002141227.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556833|gb|EEA06878.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 106
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELP-KTGKGKKKALPVNKDRFISKMFLRGDS 63
+ + +L G + A+D H NMVL NV+E ++ G++ + V R I +FLRGD
Sbjct: 34 RGDRELEGILYAYDPHMNMVLGNVKETSQKITIDEVTGEESTMKVT--RRIEMLFLRGDL 91
Query: 64 VIIV 67
VI+V
Sbjct: 92 VILV 95
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G +R++D+H N+VL + E+ ++ G GKK + + +R
Sbjct: 18 LVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVIR 63
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 64 GDNVILI 70
>gi|310789782|gb|EFQ25315.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L GR+ A+D HCN+VL V E ++ + K + R +F+RGD
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEMLFVRGD 85
Query: 63 SVIIV 67
SV+++
Sbjct: 86 SVVLI 90
>gi|429850300|gb|ELA25589.1| u6 small nuclear ribonucleoprotein [Colletotrichum
gloeosporioides Nara gc5]
Length = 96
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L GR+ A+D HCN+VL V E ++ + K + R +F+RGD
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDEDEEDEEVKTIS----RKSEMLFVRGD 85
Query: 63 SVIIV 67
SV+++
Sbjct: 86 SVVLI 90
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ N L G++ A+D+H NMVL +V E T + + + + +R + +++RGD V
Sbjct: 25 RGNRVLSGQLHAYDQHLNMVLSDVVETIT-TSEIDEESYEEIIKTTERKMPMLYVRGDGV 83
Query: 65 IIV 67
I+V
Sbjct: 84 ILV 86
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREM-------WTELPKTGKGKKKALPVNKDRFISK 56
++ + +L+G + A+D H N++L NV E T L T + K+++P+
Sbjct: 24 LRGDRELIGVLHAYDSHMNLILGNVDEFVTVVDVDSTTLESTTRFVKRSMPM-------- 75
Query: 57 MFLRGDSVIIVLRN 70
+++RGD VI++ N
Sbjct: 76 LYIRGDGVILISPN 89
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + L G++ AFDRH N+VL + E PK G+ + P + R + + LR
Sbjct: 21 VTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRALGLVILR 80
Query: 61 GDSVI 65
G++V+
Sbjct: 81 GETVV 85
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREM------WTELPKTGKGKKKALPVNKD-RFI 54
+S + G++ AFD+H N+VL + E + EL K G + + VN+D RF+
Sbjct: 54 ISTLDGRSFTGQLLAFDKHMNLVLADTEEARTTKKSYQELAKAKVGSQ--VKVNEDKRFL 111
Query: 55 SKMFLRGDSVIIVL 68
+ LRG+ V+ V+
Sbjct: 112 GLIILRGEQVVSVV 125
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++++ +L G++ A+D+H N+VL +V E+ T + L K R + +F+RGD
Sbjct: 28 LRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVEIDDLLFSFLLQTTK-RTVPFLFVRGDG 86
Query: 64 VIIV 67
VI+V
Sbjct: 87 VILV 90
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 11/68 (16%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK----M 57
+++ + Q++GR AFDRH N+VL + E + +LP KK L +DR + + +
Sbjct: 19 ITIVDGRQIVGRFMAFDRHMNLVLSDAEE-FRKLP-----PKKGL-TEEDRAVRRVLGFI 71
Query: 58 FLRGDSVI 65
LRG+ V+
Sbjct: 72 LLRGEEVV 79
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVN-KDRFISKMFLR 60
++ + +L G + A+D H NM++ +V E M ++P G A + R + +F+R
Sbjct: 27 LRGDRELTGVLHAYDGHMNMIMSDVEETIMIVDVPADGVLLPGAGSIKVAKRRLEMLFVR 86
Query: 61 GDSVIIV 67
GD VI+V
Sbjct: 87 GDGVILV 93
>gi|342180098|emb|CCC89574.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma
congolense IL3000]
Length = 111
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ N L+ V AFD+H N+VL + E+ + K+R I MFLRG SV
Sbjct: 52 RYNKSLVATVVAFDKHFNLVLRDAVELMMINDE-----------QKERSIRNMFLRGASV 100
Query: 65 IIVLRNPK 72
+ +++ P+
Sbjct: 101 VFIVKLPQ 108
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 37.7 bits (86), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G +R++D+H N+VL + E+ ++ G GKK + + +R
Sbjct: 18 LVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVIR 63
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 64 GDNVILI 70
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 7 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 66
N L+ V AFD+H N+VL + E+ + K + ++R I MFLRG SV+
Sbjct: 54 NKSLVATVVAFDKHFNLVLRDAVELT--MVKNEQ---------RERSIRNMFLRGSSVVF 102
Query: 67 VLRNPK 72
V++ P+
Sbjct: 103 VVKLPQ 108
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K++ L G++R++D+H N+VL++V E+ G+G R + + +R
Sbjct: 18 LIKIKDDITLRGKLRSYDQHLNIVLDDVEEI-------GEGGST-------RKLGTVVIR 63
Query: 61 GDSVIIV 67
GD+V+ +
Sbjct: 64 GDTVVFI 70
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G +R++D+H N+VL + E+ ++ G GKK + + +R
Sbjct: 23 LVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVIR 68
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 69 GDNVILI 75
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK 44
+++++ QL+G+ AFDRH N+VL + E+ PK GK +++
Sbjct: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKTQEE 61
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL +V E + ++ + + + +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGDVVETIYVVEESEDDDGEEIVKTVVKKSEMLFVRGDS 89
Query: 64 VIIV 67
VI++
Sbjct: 90 VILI 93
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 13/65 (20%)
Query: 7 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 66
N ++ G++R FD + NMVLE+V E++ + K +++AL + L+GD++ +
Sbjct: 38 NLKIEGKIRGFDEYMNMVLEDVEELYVK-----KQERRAL--------GTILLKGDAMAL 84
Query: 67 VLRNP 71
+ P
Sbjct: 85 ITAAP 89
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G +R++D+H N+VL + E+ ++ G GKK + + +R
Sbjct: 21 LVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----GSGKK----------LGTIVIR 66
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 67 GDNVILI 73
>gi|358382874|gb|EHK20544.1| hypothetical protein TRIVIDRAFT_90246 [Trichoderma virens Gv29-8]
Length = 97
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D HCN+VL +V E + + + +++ +F+RGDS
Sbjct: 30 LRGDRELKGKLHAYDSHCNLVLGDVEETIYAVDDDEEEGDEVKTISRKS--EMLFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 38/67 (56%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K ++ GR++++D+H N+VLE+ E++ + + R + + +R
Sbjct: 18 LVKLKGANEVRGRLKSYDQHLNLVLEDAEEIYED--------------GRTRKLGTIVIR 63
Query: 61 GDSVIIV 67
GD+V+++
Sbjct: 64 GDTVLLI 70
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G ++++D+H N+VL + E+ ++ G GKK I + +R
Sbjct: 18 LVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GSGKK----------IGTIVIR 63
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 64 GDNVILI 70
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ K+N L G++R+FD+H N+VL++ E+ + R + + +R
Sbjct: 18 LIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTIVIR 63
Query: 61 GDSVIIV 67
GD+V+++
Sbjct: 64 GDTVVLI 70
>gi|443924031|gb|ELU43110.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 125
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMV 24
++S++NN +LL RV+AFDRH NMV
Sbjct: 91 LISLRNNKKLLARVKAFDRHSNMV 114
>gi|45190730|ref|NP_984984.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|44983709|gb|AAS52808.1| AER125Cp [Ashbya gossypii ATCC 10895]
gi|374108207|gb|AEY97114.1| FAER125Cp [Ashbya gossypii FDAG1]
Length = 83
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L G ++AFD HCN+VL + E +L G+ K+ + + +F+RGDSV +V
Sbjct: 26 KLSGTLQAFDSHCNIVLSDAEETIYQLI---DGELKS----ETKSSEMVFVRGDSVTLV 77
>gi|359417782|ref|ZP_09209851.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
gi|358031875|gb|EHK00710.1| like-Sm ribonucleoprotein core [Candidatus Haloredivivus sp. G17]
Length = 78
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 15/62 (24%)
Query: 6 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 65
N+ + G ++AFD+H N+ LEN R + TE +T G K+FLRGD+V+
Sbjct: 29 NDVTVSGELQAFDKHLNIWLENAR-VNTEDGQTDYG--------------KLFLRGDNVL 73
Query: 66 IV 67
V
Sbjct: 74 FV 75
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ +N QL+G++ AFDRH N+VL + E K +A+P + R + + LR
Sbjct: 11 VTLNDNRQLVGQMLAFDRHMNLVLADCEEFRRVKQKKKSADDEAVPSQELKRSLGLVILR 70
Query: 61 GDSVI 65
G+ ++
Sbjct: 71 GEMIV 75
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ K+N L G++R+FD+H N+VL++ E+ + R + + +R
Sbjct: 18 LIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSN--------------GSTRKLGTVVIR 63
Query: 61 GDSVIIV 67
GD+V+++
Sbjct: 64 GDTVVLI 70
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + +L G + A+D H N++L +V E M + P+ + + + K R + +F+RG
Sbjct: 27 LRGDRELTGILHAYDGHMNLILSDVEETIMIVDAPEGVPPSQSVVNMAK-RKVPMLFVRG 85
Query: 62 DSVIIV 67
D VI+V
Sbjct: 86 DGVILV 91
>gi|302891811|ref|XP_003044787.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
gi|256725712|gb|EEU39074.1| hypothetical protein NECHADRAFT_61990 [Nectria haematococca mpVI
77-13-4]
Length = 96
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L G++ A+D HCN+VL V E ++T + K + R +F+RGD
Sbjct: 30 LRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDEDDEVKTI----SRKSEMLFVRGD 85
Query: 63 SVIIV 67
SV+++
Sbjct: 86 SVVLI 90
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++ + Q++GR AFDRH N+VL + E PK G +++ R + + LRG
Sbjct: 19 VTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEER---QVRRVLGFLLLRG 75
Query: 62 DSVI 65
+ V+
Sbjct: 76 EEVV 79
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +KN + G++ AFD H N+ LEN E KK A + R + +F+R
Sbjct: 22 LVELKNGHAITGKLVAFDVHINVTLENAEE-----------KKDA---DTLRKLGNVFIR 67
Query: 61 GDSVIIV 67
GD++I++
Sbjct: 68 GDTIILI 74
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++ ++ GR++ +D HCNMVL E G ++ + V K + F+R
Sbjct: 26 LVKLRGAREMKGRLQGYDSHCNMVLSEAEEYI-----YSAGDEETV-VKKTEMV---FVR 76
Query: 61 GDSVIIV 67
GDSVI++
Sbjct: 77 GDSVILI 83
>gi|408389243|gb|EKJ68711.1| hypothetical protein FPSE_11107 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +L G++ A+D HCN+VL V E ++T + K + R +F+RGD
Sbjct: 30 LRGDRELKGKLHAYDSHCNLVLGEVEETIYTVDEDDDDDELKTI----SRKSEMLFVRGD 85
Query: 63 SVIIV 67
SV+++
Sbjct: 86 SVVLI 90
>gi|346320143|gb|EGX89744.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Cordyceps
militaris CM01]
Length = 96
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK----MFL 59
++ + +L G++ A+D HCN+VL V E T G + + + IS+ +F+
Sbjct: 30 LRGDRELKGKLHAYDSHCNLVLGEVEE-------TIYGVDEEDDEEEAKTISRKSEMLFV 82
Query: 60 RGDSVIIV 67
RGDSV+++
Sbjct: 83 RGDSVVLI 90
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 9 QLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L+G ++AFD HCN VL + E +L G+ K+ +++ +F+RGD+V ++
Sbjct: 27 ELVGTLQAFDSHCNFVLSDAVETIYQLI---DGELKS----REKSSEMIFVRGDTVALI 78
>gi|336260805|ref|XP_003345195.1| hypothetical protein SMAC_07871 [Sordaria macrospora k-hell]
gi|380088006|emb|CCC05133.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 97
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+VL V E + + +++ +F+RGDS
Sbjct: 30 LRGDRELKGRLHAYDSHCNLVLGEVEETIYVVDDEDADEDDLKTISRKS--EMLFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+K L G + A+D H NM++ +V E + E ++G + R + +F+RG
Sbjct: 27 LKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESGSTVQ-----TMKRAMEMLFVRG 81
Query: 62 DSVIIV 67
DSVI+V
Sbjct: 82 DSVILV 87
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWT--ELPKTGKGKKKALPVNKDRFISKMF 58
++ ++ + ++ G + A+D H NMVL +V E T E+P++ + V ++ +F
Sbjct: 13 LIKLRGDREVTGTLHAYDGHMNMVLSDVTESITIVEVPESPNQEPTIRIVKRN--CEMLF 70
Query: 59 LRGDSVIIVL 68
+RGD V++V+
Sbjct: 71 VRGDGVVLVI 80
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 11/60 (18%)
Query: 9 QLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
++ G+++ +D HCNMVL + +E ++ E + KK + +F+RGDSVI++
Sbjct: 76 EMKGKLQGYDSHCNMVLSDAQETIYGENEEDTVVKKTEM----------VFVRGDSVILI 125
>gi|358397340|gb|EHK46715.1| hypothetical protein TRIATDRAFT_299236 [Trichoderma atroviride
IMI 206040]
Length = 97
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G++ A+D HCN+VL V E + + + +++ +F+RGDS
Sbjct: 30 LRGDRELKGKLHAYDSHCNLVLGEVEETIYAVDDDEEESDEVKTISRKS--EMLFVRGDS 87
Query: 64 VIIV 67
V+++
Sbjct: 88 VVLI 91
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ + +L+G +R FD + NMVL++V E +T LP GK K I + L G SV
Sbjct: 37 RGDRELVGTLRGFDDYVNMVLDDVTE-YTILPDGGKRVDK---------IESILLNGSSV 86
Query: 65 IIVL 68
+++
Sbjct: 87 AMLV 90
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + ++ GR+ A+D H NMVL +V E ++ +T + K + +F+RG
Sbjct: 32 LRGDREIKGRLHAYDSHLNMVLSDVEETVYIVDIDETEEHIS-----TKKKHSEMIFVRG 86
Query: 62 DSVIIV 67
DSVI++
Sbjct: 87 DSVILI 92
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMW----TELPKTGKGKKKALPVNKDRFISKMFL 59
++ + +L G + A+D H N+++ +V E T+ TG+G L V K R + +F+
Sbjct: 27 LRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPTGQG---VLQVAK-RKMEMLFV 82
Query: 60 RGDSVIIV 67
RGD VI+V
Sbjct: 83 RGDGVILV 90
>gi|357126031|ref|XP_003564692.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Brachypodium distachyon]
Length = 114
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 10 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
+L + A+D+H NM+L +V E+ T + + ++ + + R I +F+RGD VI+V
Sbjct: 51 ILNLLMAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTR-RTIPFLFVRGDGVILV 107
>gi|159111944|ref|XP_001706202.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
gi|157434296|gb|EDO78528.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
ATCC 50803]
Length = 124
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 10 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 69
+ G ++A+DRH N+V E W E + ++R LRGD+VI+V+
Sbjct: 74 ITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFMLRGDNVIMVVS 122
Query: 70 N 70
N
Sbjct: 123 N 123
>gi|303279124|ref|XP_003058855.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460015|gb|EEH57310.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 403
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 14 VRAFDRHCNMVLENVREMWT--------ELPKTGKG--KKKALPVNKDRFISKMFLRGDS 63
V+AFD++ NM+L++VRE++T + K GK K K ++R + ++FLRG+
Sbjct: 308 VKAFDKYMNMLLQDVREIYTVRLKHRVEYVDKNGKTRYKIKHRLEGRERTMDQVFLRGEQ 367
Query: 64 VIIV 67
++ V
Sbjct: 368 IVTV 371
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+S+K+ + +G AFDRH N+VL + E L KG K+ P+ R + + LRG
Sbjct: 18 VSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTL---NKGLKE--PIEVKRTLGFILLRG 72
Query: 62 DSVI 65
++++
Sbjct: 73 ENIV 76
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+++ +G +AFD+H N++L E + + K A P + R + + LRGDS
Sbjct: 21 LQDGRTFIGTFKAFDKHMNLILSECDEY-----RKYRTKGDAPPREEKRTLGFVLLRGDS 75
Query: 64 VIIV 67
V+ V
Sbjct: 76 VVTV 79
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE---MWTELPKTGKGKKKALPVN-KDRFISKMFL 59
++ + +L G + A+D H N++L +V E + ++ G+G++ VN R + +F+
Sbjct: 26 LRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAGEGQQT---VNMAKRKMEMLFV 82
Query: 60 RGDSVIIV 67
RGD VI+V
Sbjct: 83 RGDGVILV 90
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKD---RFISKMF 58
+++ + L+G + AFDRH N+VL + E PK G+ P + R + +
Sbjct: 21 VTLNDGRALVGHMLAFDRHMNLVLADCEEFRRVRPKKKAGESSEGPAPEQEIKRTLGLVI 80
Query: 59 LRGDSVI 65
LRG++V+
Sbjct: 81 LRGETVV 87
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 21/74 (28%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENV----------REMWTELPKTGKGKKKALPVNKDRF 53
++N +L GR+ A+D+H NMVL V E + E+ +T K R
Sbjct: 33 MRNERELRGRLHAYDQHLNMVLGEVEETVTTVEIDEETYEEVYRTTK-----------RN 81
Query: 54 ISKMFLRGDSVIIV 67
I +F+RGD VI+V
Sbjct: 82 IPMLFVRGDGVILV 95
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Query: 6 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 65
N+ + G++ FD NMVLE+VRE+ ++ V D+ I KM L G V
Sbjct: 22 NDKEFTGKLVGFDDFVNMVLEDVREIDSD-------------VKSDKVIKKMLLNGGQVA 68
Query: 66 IVL 68
+++
Sbjct: 69 MII 71
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G + A+D H NMVL V E T + + ++ + K R +F+RGD
Sbjct: 34 LRGDRELTGILHAYDGHLNMVLGEVEETITMVDVNEETLEEVIRTVK-RTFEMLFVRGDG 92
Query: 64 VIIV 67
VI+V
Sbjct: 93 VILV 96
>gi|226468892|emb|CAX76474.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 231
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 3 SVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++++ QL+G +AFDRH N++L + E KT K K + R + + LRG+
Sbjct: 20 TMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRSLGLVLLRGE 76
Query: 63 SVI 65
V+
Sbjct: 77 HVV 79
>gi|296809782|ref|XP_002845229.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
gi|238842617|gb|EEQ32279.1| U6 snRNP-associated protein Lsm3 [Arthroderma otae CBS 113480]
Length = 109
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + +L GR+ A+D HCN+VL +V E + + G++ + K + +F+RG
Sbjct: 32 LRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEEDEAGEETVKTIKKQEEM--LFVRG 87
>gi|238499899|ref|XP_002381184.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
gi|317150537|ref|XP_003190430.1| U6 snRNA-associated Sm-like protein LSm3 [Aspergillus oryzae
RIB40]
gi|220692937|gb|EED49283.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Aspergillus
flavus NRRL3357]
Length = 96
Score = 36.2 bits (82), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L GR+ A+D HCN+V+ +V E + + ++ + + +F+RGDS
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVMGDVEETIYVVEEDENEEEIIRTIKRQE--EMLFVRGDS 88
Query: 64 VIIV 67
V+++
Sbjct: 89 VVLI 92
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G ++++D+H N+VL + E+ ++ G+GKK + + +R
Sbjct: 18 LVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GEGKK----------MGTIVIR 63
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 64 GDNVILI 70
>gi|367054976|ref|XP_003657866.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
gi|347005132|gb|AEO71530.1| hypothetical protein THITE_2124020 [Thielavia terrestris NRRL 8126]
Length = 179
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M+++++ +LLG +R++D+ N+VL++ +E P T + + L + DR + +R
Sbjct: 55 MVALRDGRKLLGILRSWDQFANLVLQSTKERIFVPPGTAPNQTRGLYADIDRGL--FLVR 112
Query: 61 GDSVIIV 67
G++V+++
Sbjct: 113 GENVLLM 119
>gi|378726255|gb|EHY52714.1| hypothetical protein HMPREF1120_00923 [Exophiala dermatitidis
NIH/UT8656]
Length = 104
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + +L GR+ A+D HCN+VL V E + + +G++ K +F+RG
Sbjct: 31 LRGDRELKGRLHAYDSHCNLVLGEVEETIYTIEEDDEGEETVKTTKKQS--DMLFVRG 86
>gi|412991162|emb|CCO16007.1| predicted protein [Bathycoccus prasinos]
Length = 246
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 14 VRAFDRHCNMVLENVREMWTELPK------TGKGKKKA----LPVNKDRFISKMFLRGDS 63
+ AFD++ N V ++ E ++ + GKG+ K + ++R +S+MFLRG+S
Sbjct: 148 ISAFDKYFNFVAHDIEERYSVRVRKEKEYVNGKGETKTRRRRVIEQRERKVSQMFLRGES 207
Query: 64 VIIV 67
V++V
Sbjct: 208 VVLV 211
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 6 NNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 65
++ Q++GR AFDRH N+VL + E PK GK +++ + R + + LRG+ +I
Sbjct: 23 DSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGKSEEER---EERRVLGLVLLRGEEII 79
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVRE--MWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++ + +L G + A+D H N++L +V E M + + + + + K R I +F+RG
Sbjct: 27 LRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQNTVNIAK-RKIDMLFVRG 85
Query: 62 DSVIIV 67
D VI+V
Sbjct: 86 DGVILV 91
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 64
+ + +L G++ +D+H NM+L +V E T + + + + + R + +F+RGD V
Sbjct: 21 RGDRELRGKLHGYDQHLNMILGDVEETVTS-TEIDEETDEQIVKKQTRKVGMLFVRGDIV 79
Query: 65 IIV 67
++V
Sbjct: 80 VLV 82
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + +G++ AFDRH N+V+ E PK G+ + P + R + + LR
Sbjct: 21 VTINDGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKKKAGETETPPEQEMKRTLGLVILR 80
Query: 61 GDSVIIV 67
G++V+ +
Sbjct: 81 GETVVSI 87
>gi|344303705|gb|EGW33954.1| hypothetical protein SPAPADRAFT_59353 [Spathaspora passalidarum
NRRL Y-27907]
Length = 80
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVRE-MWTELPKTGKGKKKALPVNKDRFISKMFL 59
++ ++ ++ G+++ +D HCNMVL E ++ + + KK + +F+
Sbjct: 20 LIKLRGAREIKGKLQGYDSHCNMVLSEAEEYIYNDSNDDVETKKTEM----------VFV 69
Query: 60 RGDSVIIV 67
RGDSVI++
Sbjct: 70 RGDSVILI 77
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 12/64 (18%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+KN +Q++G++ +D N+VL++ RE+ P +G+ K R + +F+RG++
Sbjct: 24 LKNGSQIVGKLIVYDEMMNLVLDSAREVD---PASGEVK---------RSVGTLFIRGNN 71
Query: 64 VIIV 67
V+ V
Sbjct: 72 VLFV 75
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G + A+D H N+++ +V E + + L V K R + +F+RGD
Sbjct: 27 LRGDRELTGILHAYDGHMNLIMSDVEETILIVDTDSVPNGQGLQVAK-RKMEMLFVRGDG 85
Query: 64 VIIV 67
VI+V
Sbjct: 86 VILV 89
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ K++ L G++R+FD+H N+VL++ E+ G G + L + +R
Sbjct: 18 LIKTKDSVSLRGKLRSFDQHLNIVLDDTEEIR------GDGSVRKL--------GTVVIR 63
Query: 61 GDSVIIV 67
GD+V+++
Sbjct: 64 GDTVVLI 70
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 13/67 (19%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +KNN + G+V +FD H N+VL+N EL G+ K K + + LR
Sbjct: 19 LIRLKNNLNIRGKVTSFDAHMNIVLDNAE----ELDANGELKAK---------LGTILLR 65
Query: 61 GDSVIIV 67
G ++I V
Sbjct: 66 GGNIIFV 72
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++ + L G + A+D H NMVL +V E T + + + R +F+R
Sbjct: 25 LIKLRGDRVLNGTLHAYDGHMNMVLSDVIETITVVEPAANPDDEPIIRTVKRNCEMLFVR 84
Query: 61 GDSVIIV 67
GD V++V
Sbjct: 85 GDGVVLV 91
>gi|308162403|gb|EFO64802.1| Small nuclear ribonucleoprotein Sm D2, putative [Giardia lamblia
P15]
Length = 83
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 10 LLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 69
+ G ++A+DRH N+V E W E + ++R LRGD+VI+V+
Sbjct: 33 ITGVLKAYDRHLNLVFSEATETWEE---------NGIEYTEER--KNFMLRGDNVIMVVS 81
Query: 70 N 70
N
Sbjct: 82 N 82
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G + A+D H N++L +V E + + K+ + V K R +F+RGDS
Sbjct: 41 LRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGKETVRVVK-RQSEMLFVRGDS 99
Query: 64 VIIV 67
VI+V
Sbjct: 100 VILV 103
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK----DRFISKM 57
+ ++ + ++ G + A+D+H NM+L V E T + + A PV R I +
Sbjct: 27 IKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLD---ESAAQPVGTLRQVKRQIDCL 83
Query: 58 FLRGDSVIIV 67
F+RGDSV+++
Sbjct: 84 FVRGDSVVLL 93
>gi|367035444|ref|XP_003667004.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
gi|347014277|gb|AEO61759.1| hypothetical protein MYCTH_57908 [Myceliophthora thermophila ATCC
42464]
Length = 159
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M+++++ +LLG +R++D+ N+VL++ +E P T + + L + DR + +R
Sbjct: 35 MVALRDGRKLLGILRSWDQFANLVLQSTKERIFVAPGTVPNQPRGLYADIDRGL--FLVR 92
Query: 61 GDSVIIV 67
G++V+++
Sbjct: 93 GENVLLL 99
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 12 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKA-------------LPVNKDRFISKMF 58
G + AFD+H N+VL +V E +T L + + K A ++ R + ++F
Sbjct: 139 GLLVAFDKHMNLVLRDVEEQYTVLLQVQRVKPPAPGSSGLERTRWVRQQEHRRRQLRQVF 198
Query: 59 LRGDSVIIVLRNP 71
+RGDSV++V P
Sbjct: 199 VRGDSVVLVSAGP 211
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + + GR+ A+D+H NM+L +V E+ T + ++ K R + +F+RGD+
Sbjct: 29 LRGDREARGRLHAYDQHLNMILGDVEEVITSTETDEETFEEFTKTTK-RSVPFLFIRGDA 87
Query: 64 VIIV 67
V +V
Sbjct: 88 VTLV 91
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 12 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK--DRFISKMFLRGDSVIIVL 68
G + AFD+H N++L +V E + L + + P+ R+ ++F++GD+V+ V+
Sbjct: 196 GYIIAFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVI 254
>gi|326472596|gb|EGD96605.1| GTP-binding protein [Trichophyton tonsurans CBS 112818]
Length = 779
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++ + +L GR+ A+D HCN+VL +V E + + G++ + K +F+RG
Sbjct: 30 VKLRGDRELKGRLHAYDSHCNIVLGDVEETIYIVEENEAGEETIKTIKKQE--EMLFVRG 87
Query: 62 DS 63
S
Sbjct: 88 TS 89
>gi|388579060|gb|EIM19389.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 179
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++ + QL+G++ AFDRH N+VL + E + L G + +P R + + LRG
Sbjct: 21 VTLNDTRQLVGQMLAFDRHMNLVLVDTIE-FRRL--KGPSSQGDIPKEMKRALGLIVLRG 77
Query: 62 DSVIIV 67
+++I +
Sbjct: 78 ETIISI 83
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G + A+D H N++L +V E + + + + V K R +F+RGDS
Sbjct: 42 LRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGSETVRVVK-RQSEMLFVRGDS 100
Query: 64 VIIV 67
VI+V
Sbjct: 101 VILV 104
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 12 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67
G++R FD N+V++ E+ + GKG+ +A ++ R + ++ L+GD+V ++
Sbjct: 44 GKIRGFDEFMNLVIDEA----VEVKQPGKGQTEADVKDQRRELGQILLKGDNVCLI 95
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 14/67 (20%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K N ++ G ++++D+H N+VL + E+ ++ G GKK + + +R
Sbjct: 21 LVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSD----GGGKK----------MGTIVIR 66
Query: 61 GDSVIIV 67
GD+VI++
Sbjct: 67 GDNVILI 73
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ ++NN + G ++ FD H N+ LEN ++ E P I K+ LR
Sbjct: 21 LLRLRNNKTVQGTLKDFDIHMNLTLENAEDVSEEKPNP---------------IGKVLLR 65
Query: 61 GDSVIIV 67
GD+++ +
Sbjct: 66 GDNILAI 72
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+++++ +G++ AFD+H N+VL E PKT +++ + R + + LRG
Sbjct: 18 ITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRPKTKSQQER----EEKRSLGLVILRG 73
Query: 62 DSVI 65
+++I
Sbjct: 74 ETII 77
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 29/81 (35%)
Query: 14 VRAFDRHCNMVLENVREMWT-----ELPKTG--------------------KGKKKALPV 48
V AFD+H N+ LE+ E+WT + P G +GK++ L
Sbjct: 145 VAAFDKHWNLALEDCFEVWTRKVKRKAPALGAPSGVKRKEDTAPKVVVKKIEGKEETL-- 202
Query: 49 NKDRFISKMFLRGDSVIIVLR 69
+R + +M LRG+ V I+++
Sbjct: 203 --ERHVPQMLLRGEQVAIIVK 221
>gi|116204657|ref|XP_001228139.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
gi|88176340|gb|EAQ83808.1| hypothetical protein CHGG_10212 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
M+++++ +L+G +R++D+ N+VL++ +E P T + + L + DR + +R
Sbjct: 58 MLALRDGRKLVGILRSWDQFANLVLQSTKERIFVPPGTAPDQVRGLYADVDRGL--FLVR 115
Query: 61 GDSVIIV 67
G++V+++
Sbjct: 116 GENVLLL 122
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 1 MMSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 60
++ +K ++ G+++++D H N+VLEN E+ + R + + +R
Sbjct: 18 LVKLKGGREIRGQLKSYDYHLNLVLENAEEIRG---------------TRTRQLGTIIVR 62
Query: 61 GDSVIIVLRNP 71
GD+VI+V P
Sbjct: 63 GDNVILVSPAP 73
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++++++ +G +AFD+H NM+L + E PK K +++ + R + + LRG
Sbjct: 17 ITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKRVLGFVLLRG 71
Query: 62 DSVI 65
+S++
Sbjct: 72 ESIV 75
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
++++++ +G +AFD+H NM+L + E PK K +++ + R + + LRG
Sbjct: 19 ITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVERE-----EKRVLGFVLLRG 73
Query: 62 DSVI 65
+S++
Sbjct: 74 ESIV 77
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 14 VRAFDRHCNMVLENVREMWTE----------LPKTGKGKKKALP---VNK--------DR 52
V AFD+H N+ LE+ E+WT P K K+ P V K +R
Sbjct: 145 VAAFDKHWNLALEDCFEVWTRKVKRKAPALGAPSGVKRKEDTAPKVVVKKIEGKEETLER 204
Query: 53 FISKMFLRGDSVIIVLR 69
+ +M LRG+ V I+++
Sbjct: 205 HVPQMLLRGEQVAIIVK 221
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKG--KKKALPVNKDRFISKMFL 59
+++ + L+G++ A+D+H N VL E T K KG + A + R + + L
Sbjct: 11 VTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKRTLGLVIL 70
Query: 60 RGDSVIIV 67
RG++++ V
Sbjct: 71 RGETIVSV 78
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 10/61 (16%)
Query: 7 NTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 66
+ +L GR+ FD + N++L++V E++ GKK++ P N + ++ L+GD++ +
Sbjct: 35 DCRLEGRIIGFDEYMNVILDDVEEVFY-------GKKQSQPRNS---LGRILLKGDNITL 84
Query: 67 V 67
+
Sbjct: 85 I 85
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 34.7 bits (78), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 61
+ ++NN +L G + ++D H NM++ E T + K K+K + ++LRG
Sbjct: 21 IKMRNNIELKGTLVSYDNHLNMIISKAEE--TSFQEGIKTKRK---------LDALYLRG 69
Query: 62 DSVIIV 67
D +I++
Sbjct: 70 DGIILI 75
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNK-DRFISKMFLR 60
+++ + L G++ AFDRH N+VL + E K G++ P + R + + LR
Sbjct: 21 ITLNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGEEGPAPEQEIKRSLGLVILR 80
Query: 61 GDSVI 65
G+SV+
Sbjct: 81 GESVV 85
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
++ + +L G + A+D H N++L +V E + + + + V K R +F+RGDS
Sbjct: 36 LRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENGHETVRVVK-RQSEMLFVRGDS 94
Query: 64 VIIV 67
VI+V
Sbjct: 95 VILV 98
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK 43
+K + +++G +R FD + NMVLE+V TE+ T +GKK
Sbjct: 34 MKGDKEIVGTLRGFDVYVNMVLEDV----TEIEDTPEGKK 69
>gi|56759110|gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
gi|226468894|emb|CAX76475.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468896|emb|CAX76476.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468898|emb|CAX76477.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468900|emb|CAX76478.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468904|emb|CAX76480.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468906|emb|CAX76481.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226472872|emb|CAX71122.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 3 SVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++++ QL+G +AFDRH N++L + E KT K K + R + + LRG+
Sbjct: 20 TMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRALGLVLLRGE 76
Query: 63 SVI 65
V+
Sbjct: 77 HVV 79
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTEL-PKTGKGKKKALPVNKDRFISKMFLRGD 62
++ + +++G + A+D H N++L +V E + P G + R ++ +F+RGD
Sbjct: 27 LRGDREVVGILHAYDGHMNLILSDVEETIMIVDPIEGSPNSEGTVKVAKRKMNMLFVRGD 86
Query: 63 SVIIV 67
VI+V
Sbjct: 87 GVILV 91
>gi|226468890|emb|CAX76473.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468902|emb|CAX76479.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 3 SVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 62
++++ QL+G +AFDRH N++L + E KT K K + R + + LRG+
Sbjct: 20 TMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDR---QEKRSLGLVLLRGE 76
Query: 63 SVI 65
V+
Sbjct: 77 HVV 79
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 4 VKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 63
+K+N + +G AFDRH N+VL + E + + K K+ PV R + + LRG++
Sbjct: 19 IKDNRRFIGVFIAFDRHMNLVLADCEE-YRMIKKQPSDKE---PVEIKRTLGFVLLRGEN 74
Query: 64 VI 65
V+
Sbjct: 75 VV 76
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,065,948,802
Number of Sequences: 23463169
Number of extensions: 33853267
Number of successful extensions: 69097
Number of sequences better than 100.0: 765
Number of HSP's better than 100.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 68190
Number of HSP's gapped (non-prelim): 785
length of query: 72
length of database: 8,064,228,071
effective HSP length: 44
effective length of query: 28
effective length of database: 7,031,848,635
effective search space: 196891761780
effective search space used: 196891761780
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)