Query 035130
Match_columns 72
No_of_seqs 121 out of 1041
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 15:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_B Protein (small nuclear 99.9 1.1E-24 3.8E-29 133.9 6.9 71 2-72 44-114 (118)
2 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.1E-23 1E-27 123.6 7.8 63 2-71 25-87 (96)
3 4emg_A Probable U6 snRNA-assoc 99.9 2.6E-23 8.9E-28 123.4 7.3 68 2-70 24-91 (93)
4 4emk_A U6 snRNA-associated SM- 99.9 2.1E-22 7.1E-27 119.9 8.4 57 2-71 35-91 (94)
5 1d3b_B Protein (small nuclear 99.9 2E-22 6.9E-27 118.5 7.8 65 2-70 19-83 (91)
6 3s6n_E Small nuclear ribonucle 99.9 4E-22 1.4E-26 118.2 7.4 54 5-71 38-91 (92)
7 4emk_C U6 snRNA-associated SM- 99.9 7.8E-22 2.7E-26 120.7 7.7 62 2-70 38-99 (113)
8 1h64_1 SnRNP SM-like protein; 99.9 9E-22 3.1E-26 112.2 7.4 56 2-71 19-74 (75)
9 3pgw_B SM B; protein-RNA compl 99.9 1.4E-21 4.8E-26 131.4 8.7 64 2-69 19-82 (231)
10 1i4k_A Putative snRNP SM-like 99.9 1.4E-21 4.8E-26 111.7 7.4 56 2-71 19-74 (77)
11 1mgq_A SM-like protein; LSM, R 99.9 1.2E-21 4.3E-26 113.7 7.0 54 2-69 30-83 (83)
12 1th7_A SnRNP-2, small nuclear 99.9 1.6E-21 5.4E-26 112.7 7.4 56 2-71 24-79 (81)
13 2fwk_A U6 snRNA-associated SM- 99.9 3.6E-22 1.2E-26 123.2 5.0 70 2-71 43-113 (121)
14 3s6n_G Small nuclear ribonucle 99.9 1.1E-21 3.8E-26 112.3 6.4 55 2-70 19-73 (76)
15 1ljo_A Archaeal SM-like protei 99.9 1.9E-21 6.4E-26 111.4 7.3 56 2-71 20-76 (77)
16 1i8f_A Putative snRNP SM-like 99.8 4E-21 1.4E-25 111.1 6.9 55 2-71 26-80 (81)
17 4emk_B U6 snRNA-associated SM- 99.8 2.1E-21 7.3E-26 110.8 5.2 56 2-71 19-74 (75)
18 3s6n_F Small nuclear ribonucle 99.8 8.5E-21 2.9E-25 111.1 7.5 56 2-71 21-76 (86)
19 1n9r_A SMF, small nuclear ribo 99.8 6.9E-21 2.4E-25 113.0 7.2 56 2-71 36-92 (93)
20 1d3b_A Protein (small nuclear 99.8 7.7E-20 2.6E-24 104.5 7.3 55 2-70 20-74 (75)
21 4emh_A Probable U6 snRNA-assoc 99.8 4.5E-20 1.5E-24 111.7 6.6 57 2-71 31-87 (105)
22 1b34_A Protein (small nuclear 99.8 1.2E-19 4.1E-24 111.6 7.0 56 2-71 17-72 (119)
23 1m5q_A SMAP3, small nuclear ri 99.8 9.5E-19 3.2E-23 109.2 5.6 52 2-71 15-66 (130)
24 2y9a_D Small nuclear ribonucle 99.7 1E-17 3.6E-22 104.0 7.0 56 2-71 20-75 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 97.3 0.0003 1E-08 40.8 3.9 46 2-67 22-68 (86)
26 1u1s_A HFQ protein; SM-like ba 96.2 0.0044 1.5E-07 35.6 3.0 25 2-26 24-48 (82)
27 2ylb_A Protein HFQ; RNA-bindin 96.1 0.0053 1.8E-07 34.5 3.0 25 2-26 26-50 (74)
28 3sb2_A Protein HFQ; SM-like, R 96.0 0.006 2E-07 34.8 3.0 23 2-24 25-47 (79)
29 3ahu_A Protein HFQ; SM-like mo 95.9 0.01 3.6E-07 33.7 3.8 26 2-27 28-53 (78)
30 2qtx_A Uncharacterized protein 95.7 0.013 4.4E-07 32.7 3.7 26 2-27 30-55 (71)
31 1kq1_A HFQ, HOST factor for Q 95.2 0.025 8.5E-07 32.0 3.7 26 2-27 24-49 (77)
32 2y90_A Protein HFQ; RNA-bindin 94.4 0.049 1.7E-06 32.4 3.8 26 2-27 26-51 (104)
33 3hfo_A SSR3341 protein; HFQ, S 85.4 1.3 4.5E-05 24.4 3.7 25 2-26 26-50 (70)
34 3hfn_A ASL2047 protein; HFQ, S 79.8 2.8 9.6E-05 23.2 3.7 26 2-27 28-53 (72)
35 1nvp_D Transcription initiatio 77.6 2.8 9.4E-05 24.8 3.4 27 4-30 51-80 (108)
36 1nh2_D Transcription initiatio 76.0 3.2 0.00011 25.1 3.4 27 4-30 55-84 (121)
37 1y96_B Gemin7, SIP3, GEM-assoc 67.7 12 0.00042 21.2 4.5 50 2-70 34-84 (85)
38 1x4r_A PARP14 protein; WWE dom 65.2 0.25 8.6E-06 29.1 -3.1 18 12-29 35-52 (99)
39 1ycy_A Conserved hypothetical 56.9 14 0.00049 20.0 3.2 27 5-32 24-50 (71)
40 2xk0_A Polycomb protein PCL; t 55.9 16 0.00056 19.9 3.4 33 2-34 24-57 (69)
41 4a53_A EDC3; RNA binding prote 54.1 11 0.00037 22.9 2.7 27 2-29 17-45 (125)
42 4a8c_A Periplasmic PH-dependen 49.4 18 0.0006 25.3 3.6 27 2-28 92-118 (436)
43 1ky9_A Protease DO, DEGP, HTRA 47.0 16 0.00053 25.8 3.0 27 2-28 115-141 (448)
44 3rux_A BIRA bifunctional prote 46.7 24 0.00082 23.3 3.8 28 2-29 227-256 (270)
45 1ib8_A Conserved protein SP14. 39.8 21 0.00072 22.0 2.5 16 5-20 116-131 (164)
46 3stj_A Protease DEGQ; serine p 35.4 27 0.00091 23.7 2.7 27 2-28 92-118 (345)
47 4bbk_A Kindlin-1, fermitin fam 35.1 20 0.00068 22.7 1.8 42 13-65 41-82 (165)
48 3pv2_A DEGQ; trypsin fold, PDZ 33.8 22 0.00076 25.1 2.1 27 2-28 106-132 (451)
49 3sti_A Protease DEGQ; serine p 30.4 38 0.0013 21.9 2.7 27 2-28 92-118 (245)
50 2eay_A Biotin [acetyl-COA-carb 29.4 61 0.0021 20.7 3.5 18 10-27 199-216 (233)
51 1te0_A Protease DEGS; two doma 28.8 41 0.0014 22.2 2.7 27 2-28 70-96 (318)
52 2e12_A SM-like motif, hypothet 28.5 37 0.0013 19.6 2.1 13 2-14 33-45 (101)
53 3lgi_A Protease DEGS; stress-s 27.4 47 0.0016 20.9 2.7 27 2-28 81-107 (237)
54 2vc8_A Enhancer of mRNA-decapp 27.3 70 0.0024 18.0 3.1 26 4-29 16-43 (84)
55 4f7h_A Fermitin family homolog 26.9 21 0.00072 22.8 0.9 42 13-65 62-103 (173)
56 1lcy_A HTRA2 serine protease; 25.6 50 0.0017 21.9 2.7 27 2-28 75-101 (325)
57 1y8t_A Hypothetical protein RV 24.9 48 0.0016 21.8 2.5 27 2-28 68-94 (324)
58 2jub_A IPI, internal protein I 24.8 5.9 0.0002 21.4 -1.7 18 1-18 19-36 (76)
59 3tjo_A Serine protease HTRA1; 23.7 60 0.0021 20.4 2.7 27 2-28 91-117 (231)
60 2wr8_A Putative uncharacterize 23.3 66 0.0022 21.4 2.9 21 7-27 171-191 (259)
61 4hcz_A PHD finger protein 1; p 22.6 71 0.0024 16.7 2.4 32 3-34 13-47 (58)
62 1bia_A BIRA bifunctional prote 22.5 1E+02 0.0035 20.5 3.7 23 5-27 280-302 (321)
63 3mkv_A Putative amidohydrolase 22.3 29 0.001 21.5 0.9 18 3-20 404-421 (426)
64 2zbv_A Uncharacterized conserv 22.2 70 0.0024 21.3 2.8 21 7-27 167-187 (263)
65 3bfm_A Biotin protein ligase-l 22.1 1E+02 0.0034 19.6 3.5 19 10-28 202-220 (235)
66 3rkx_A Biotin-[acetyl-COA-carb 22.0 85 0.0029 21.1 3.3 23 5-27 286-308 (323)
67 4fln_A Protease DO-like 2, chl 21.9 49 0.0017 24.2 2.2 26 2-27 101-127 (539)
68 3qo6_A Protease DO-like 1, chl 21.1 71 0.0024 21.4 2.8 27 2-28 81-107 (348)
No 1
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.91 E-value=1.1e-24 Score=133.91 Aligned_cols=71 Identities=79% Similarity=1.315 Sum_probs=49.7
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 72 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~~ 72 (72)
|.|++||++.|+|+|||+||||+|+||+|++...++.+++....+...++|++|+++|||+||++|++.|+
T Consensus 44 V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I~~~~~ 114 (118)
T 1b34_B 44 INCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPL 114 (118)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECCC
T ss_pred EEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEEEeCch
Confidence 78999999999999999999999999999986544332221111122346889999999999999999875
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-23 Score=123.56 Aligned_cols=63 Identities=29% Similarity=0.565 Sum_probs=53.0
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|+|+|||++.|+|+|||+||||+|+||+|++...++... ....+.+|.++|||+||++|++.+
T Consensus 25 V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~-------~~~~r~lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 25 IKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEEL-------SESERRCEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp EEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCC-------CEEEEEEEEEEECGGGEEEEECCC
T ss_pred EEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccccc-------CcceeEcCEEEECCCEEEEEEecC
Confidence 789999999999999999999999999999875432111 123688999999999999999875
No 3
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.6e-23 Score=123.37 Aligned_cols=68 Identities=29% Similarity=0.495 Sum_probs=50.3
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~ 70 (72)
|.|++||++.|+|+|||+||||+|+||+|++...+++++..+ ......++.+|+++|||+||++|+|.
T Consensus 24 V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~-~~~~~~~r~lG~v~iRG~nVv~I~p~ 91 (93)
T 4emg_A 24 VKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD-KALKTIRKHYEMLFVRGDSVILIAPP 91 (93)
T ss_dssp EEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEECGGGEEEEECC
T ss_pred EEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCcccc-ccccccEeEeceEEECCCeEEEEEec
Confidence 789999999999999999999999999999875443322100 00112468999999999999999985
No 4
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.88 E-value=2.1e-22 Score=119.89 Aligned_cols=57 Identities=25% Similarity=0.372 Sum_probs=49.9
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++||+++|+|+|||+||||+|+||+|++.. .+ ..+.+|.++|||+||++|++..
T Consensus 35 V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 35 VIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----TG---------VTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp EEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----TC---------CEEEEEEEEECSTTEEEEEECC
T ss_pred EEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----CC---------cEeEcCEEEEcCCEEEEEEeCC
Confidence 789999999999999999999999999998731 11 2578999999999999999864
No 5
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.88 E-value=2e-22 Score=118.49 Aligned_cols=65 Identities=23% Similarity=0.477 Sum_probs=51.8
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~ 70 (72)
|.|+|||++.|+|+|||+||||+|+||+|++...+.+.+.. .....+.+|.++|||+||++|++.
T Consensus 19 V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~----~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA----EREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp EEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSC----CEEEEEEEEEEEECGGGEEEEEEE
T ss_pred EEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccc----cCccEeECCEEEECCCeEEEEEcC
Confidence 78999999999999999999999999999875433211100 112468899999999999998864
No 6
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.87 E-value=4e-22 Score=118.20 Aligned_cols=54 Identities=22% Similarity=0.496 Sum_probs=47.1
Q ss_pred ecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 5 KNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 5 ~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
++||+++|+|+|||+||||+|+||+|++... + ..+.+|.++|||+||++|++.+
T Consensus 38 ~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~----~---------~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 38 QVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT----K---------SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp SCSSEEEEEEEEECTTCCEEEEEEEEECSSS----C---------CEEEEEEEEECGGGEEEEEEC-
T ss_pred cCCEEEEEEEEEEcCcCcEEEeeeEEEecCC----C---------ceeEcCeEEEeCCEEEEEEeCC
Confidence 9999999999999999999999999986421 1 2578999999999999999875
No 7
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.86 E-value=7.8e-22 Score=120.67 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=49.3
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~ 70 (72)
|.|+|||++.|+|+|||+||||||+||+|++... + +. ......+.+|.++|||+||++|++.
T Consensus 38 V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~-~-~~-----~~~~~~r~lG~v~IRG~nIv~I~~~ 99 (113)
T 4emk_C 38 ATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP-E-DG-----KLTGAIRKLGLVVVRGTTLVLIAPM 99 (113)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------------CCEEEEEEEEECTTTEEEEEEC
T ss_pred EEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCC-C-Cc-----ccccceeEccEEEECCCeEEEEEec
Confidence 7899999999999999999999999999997631 1 10 0012368899999999999999975
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.86 E-value=9e-22 Score=112.16 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=49.4
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|+|||+++|+|+|||+|||++|+||+|++.. ...+.+|.++|||+||++|++..
T Consensus 19 V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 19 VILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG--------------EVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp EEETTSEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGGEEEEEEC-
T ss_pred EEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC--------------CceeECCEEEECCCEEEEEEeCC
Confidence 789999999999999999999999999998741 12578999999999999999854
No 9
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=1.4e-21 Score=131.44 Aligned_cols=64 Identities=23% Similarity=0.480 Sum_probs=52.0
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEe
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 69 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~ 69 (72)
|+|+|||+|+|+|+|||+||||||+||+|++...+++.+.. ...++|++|+++||||||++|+.
T Consensus 19 V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~----~~~~~R~LGlV~IRGdnIV~Isv 82 (231)
T 3pgw_B 19 CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA----EREEKRVLGLVLLRGENLVSMTV 82 (231)
T ss_pred EEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccc----cccceeEeceEEECCCcEEEEEe
Confidence 78999999999999999999999999999986433322111 11246899999999999999984
No 10
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.86 E-value=1.4e-21 Score=111.74 Aligned_cols=56 Identities=27% Similarity=0.506 Sum_probs=49.9
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|+|||++.|+|+|||+|||++|+||+|++.. ...+.+|.++|||+||++|++.+
T Consensus 19 V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 19 VRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG--------------EVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGGEEEEEECC
T ss_pred EEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC--------------CcEeECCEEEECCCEEEEEEeCC
Confidence 789999999999999999999999999998742 12578999999999999999864
No 11
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.86 E-value=1.2e-21 Score=113.74 Aligned_cols=54 Identities=24% Similarity=0.545 Sum_probs=48.5
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEe
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 69 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~ 69 (72)
|.|+|||++.|+|+|||+||||+|+||+|++.. ...+.+|.++|||+||++|+|
T Consensus 30 V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 30 IKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG--------------EVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp EEETTTEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGGEEEEEC
T ss_pred EEEcCCcEEEEEEEEECCCceeEEccEEEEecC--------------CcccCCCEEEECCCEEEEEEC
Confidence 789999999999999999999999999998741 135889999999999999986
No 12
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.86 E-value=1.6e-21 Score=112.72 Aligned_cols=56 Identities=27% Similarity=0.571 Sum_probs=49.2
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|+|||++.|+|+|||+||||+|+||+|++.. . ..+.+|.++|||+||++|++.+
T Consensus 24 V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~~I~~i~~~~ 79 (81)
T 1th7_A 24 VKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-----G---------SGKKLGTIVIRGDNVILISPLQ 79 (81)
T ss_dssp EEETTTEEEEEEEEEECTTCCEEEEEEEEECSS-----S---------CEEEEEEEEECGGGEEEEEEC-
T ss_pred EEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC-----C---------ceeECCEEEECCCEEEEEEecC
Confidence 789999999999999999999999999998742 1 2578999999999999998754
No 13
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.85 E-value=3.6e-22 Score=123.16 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=50.5
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccc-cccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK-ALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~-~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|+|||+++|+|+|||+||||+|+||+|++...++.....+. .......+.+|+++|||+||++|++.+
T Consensus 43 V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~~~~ 113 (121)
T 2fwk_A 43 VVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGG 113 (121)
T ss_dssp EEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESSS
T ss_pred EEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEEecC
Confidence 7899999999999999999999999999998642111100000 000122578999999999999999865
No 14
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.85 E-value=1.1e-21 Score=112.33 Aligned_cols=55 Identities=27% Similarity=0.512 Sum_probs=46.7
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~ 70 (72)
|.|+|||+++|+|.|||+||||+|+||+|++.. + ..+.+|.++|||+||++|++.
T Consensus 19 V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~----------~~~~lg~v~iRG~~I~~i~~~ 73 (76)
T 3s6n_G 19 LKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----G----------QQNNIGMVVIRGNSIIMLEAL 73 (76)
T ss_dssp EEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSSEEEEEC-
T ss_pred EEECCCcEEEEEEEEECCcceEEEeceEEEccC----C----------cEeEcCEEEECCCeEEEEEec
Confidence 789999999999999999999999999998642 1 147799999999999999874
No 15
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.85 E-value=1.9e-21 Score=111.39 Aligned_cols=56 Identities=29% Similarity=0.490 Sum_probs=49.1
Q ss_pred eEEecC-eEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNN-TQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~g-r~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++| |++.|+|+|||+||||+|+||+|++.. ...+.+|.++|||+||++|++..
T Consensus 20 V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 20 VEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE--------------EKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp EEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGGEEEEEEC-
T ss_pred EEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC--------------CcEeECCeEEEeCCeEEEEEeCC
Confidence 789999 999999999999999999999998731 12578999999999999999753
No 16
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.84 E-value=4e-21 Score=111.10 Aligned_cols=55 Identities=25% Similarity=0.563 Sum_probs=48.9
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++||++.|+|+|||+||||+|+||+|+ .. . ..+.+|.++|||+||++|++..
T Consensus 26 V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~-----~---------~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 26 VKLRDSHEIRGILRSFDQHVNLLLEDAEEI-ID-----G---------NVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp EEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ET-----T---------EEEEEEEEEECGGGEEEEEECC
T ss_pred EEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cC-----C---------cccCCCEEEECCCEEEEEEeCC
Confidence 789999999999999999999999999998 21 1 2588999999999999999864
No 17
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.84 E-value=2.1e-21 Score=110.84 Aligned_cols=56 Identities=23% Similarity=0.369 Sum_probs=48.6
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|+|||++.|+|.|||+||||+|+||+|+... + ..+.+|.++|||+||++|++..
T Consensus 19 V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 19 IRLSSGVDYKGILSCLDGYMNLALERTEEYVNG-----K---------KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp EECTTSCEEEEEEEEECTTCEEEEEEEEEEETT-----E---------EEEEEEEEEEEGGGSSEEEEC-
T ss_pred EEEcCCcEEEEEEEEEcCcceEEEccEEEEecC-----C---------cccEecEEEEcCCeEEEEEecC
Confidence 789999999999999999999999999998521 1 2577999999999999999853
No 18
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.84 E-value=8.5e-21 Score=111.06 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=49.2
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++||++.|+|+|||+||||+|+||+|+.. ++ ..+.+|.++|||+||++|++.+
T Consensus 21 V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g~---------~~~~lg~v~IRG~nI~~i~~~d 76 (86)
T 3s6n_F 21 VKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----GA---------LSGHLGEVLIRCNNVLYIRGVE 76 (86)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEESSEEECGGGEEEEEECC
T ss_pred EEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----Cc---------eeeEccEEEEeCCeEEEEEeCC
Confidence 78999999999999999999999999999752 11 2578999999999999999864
No 19
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.84 E-value=6.9e-21 Score=112.99 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=49.5
Q ss_pred eEEecC-eEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNN-TQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~g-r~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++| |+++|+|+|||+||||+|+||+|++.. + ..+.+|.++|||+||++|.+.+
T Consensus 36 V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~-----~---------~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 36 VKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-----V---------SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp EEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT-----E---------EEEECCSEEECGGGEEEEEECC
T ss_pred EEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC-----C---------eEeEcCEEEEcCCeEEEEEeCC
Confidence 789999 999999999999999999999998621 1 2578999999999999999865
No 20
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.81 E-value=7.7e-20 Score=104.52 Aligned_cols=55 Identities=11% Similarity=0.305 Sum_probs=48.1
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~ 70 (72)
|.|++|++++|+|.|||+|||++|+||+|+... + ..+.+|.++|||+||.+|+..
T Consensus 20 VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~----~----------~~~~lg~v~IRG~nI~~i~lP 74 (75)
T 1d3b_A 20 CETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----G----------RVAQLEQVYIRGCKIRFLILP 74 (75)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CEEEEEEEEECGGGEEEEEEC
T ss_pred EEECCCcEEEEEEEEEccceeEEEEeEEEECCC----C----------cEEEcCeEEEeCCEEEEEEcC
Confidence 789999999999999999999999999997521 1 147799999999999999864
No 21
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.81 E-value=4.5e-20 Score=111.67 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=48.2
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++|++++|+|.|||+||||+|+||+|++.. ++ ..+.+|.++|||+||++|++.+
T Consensus 31 V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~d----g~---------~~~~lg~v~IRG~nI~~I~~pd 87 (105)
T 4emh_A 31 VELKNGETFNGHLENCDNYMNLTLREVIRTMPD----GD---------KFFRLPECYIRGNNIKYLRIQD 87 (105)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----SC---------EEEEEEEEEECGGGEEEEEC--
T ss_pred EEECCCCEEEEEEEEEcCCceEEEEEEEEEccC----Cc---------eeeEcCeEEEeCCeEEEEecCH
Confidence 789999999999999999999999999997531 11 2477999999999999998754
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.80 E-value=1.2e-19 Score=111.61 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=48.8
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++|++|.|+|.|||+||||+|+||+|+... . ..+.+|.++|||+||++|++..
T Consensus 17 V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~----~----------~~~~lg~v~IRG~nI~~I~~pd 72 (119)
T 1b34_A 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN----R----------EPVQLETLSIRGNNIRYFILPD 72 (119)
T ss_dssp EEETTCCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CCEEEEEEEECGGGEEEEECCT
T ss_pred EEEcCCCEEEEEEEEEcccceEEeccEEEecCC----C----------ceeEcceEEEcCCeEEEEEecc
Confidence 789999999999999999999999999997421 1 1467999999999999999764
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.75 E-value=9.5e-19 Score=109.22 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=46.7
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++||++.|+|.|||+||||+|+||+|+. .+.+|.++|||+||++|++.+
T Consensus 15 V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------------------~~~lg~v~IRG~nI~~I~~~d 66 (130)
T 1m5q_A 15 VVLSNGEVYKGVLHAVDNQLNIVLANASNKA------------------GEKFNRVFIMYRYIVHIDSTE 66 (130)
T ss_dssp EEETTSCEEEEEEEEECTTCCEEEEEEECTT------------------CCEEEEEEECGGGEEEEEECC
T ss_pred EEECCCcEEEEEEEEEcccceeEEeeEEEEc------------------CCEeceEEEeCCeEEEEEcCC
Confidence 7899999999999999999999999999961 145899999999999998764
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.72 E-value=1e-17 Score=104.03 Aligned_cols=56 Identities=11% Similarity=0.301 Sum_probs=48.2
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeCC
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 71 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~~ 71 (72)
|.|++|++|.|+|.+||.|||++|+||+|+.. ++ ....++.++|||+||.+|+...
T Consensus 20 VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~----~g----------~~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 20 CETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----DG----------RVAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp EEESSCCEEEEEEEEECTTSCEEEEEEEEECT----TS----------CCEEEEEEEECGGGEEEEECCS
T ss_pred EEECCCcEEEEEEEEEcCceEEEEeeEEEEcC----CC----------cEeecccEEEeCCEEEEEEccc
Confidence 78999999999999999999999999999742 11 1367999999999999998643
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=97.29 E-value=0.0003 Score=40.79 Aligned_cols=46 Identities=26% Similarity=0.268 Sum_probs=36.0
Q ss_pred eEEecCeEEEEEEEEec-CeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEE
Q 035130 2 MSVKNNTQLLGRVRAFD-RHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 67 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I 67 (72)
|.+.+|+.++|.|.+|| .-.|++|.++.| + .....++|-|..|.-|
T Consensus 22 V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~-------~-------------~~~~~~iI~G~aI~eI 68 (86)
T 1y96_A 22 VTASEKNEYKGWVLTTDPVSANIVLVNFLE-------D-------------GSMSVTGIMGHAVQTV 68 (86)
T ss_dssp EEETTTEEEEEEEEEECTTTCCEEEEEECT-------T-------------SCEEEEEECGGGEEEE
T ss_pred EEEcCCCEEEEEEEEECCCceEEEEeeccc-------C-------------CeEEEEEEecceEEEE
Confidence 67899999999999999 889999999821 0 1135778888877644
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.16 E-value=0.0044 Score=35.58 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEecCeEEEEEEEEecCeeceEEc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLE 26 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~ 26 (72)
|.|.+|-.++|.+.|||+|+=|+-+
T Consensus 24 v~L~NG~~l~G~I~~fD~ftVlL~~ 48 (82)
T 1u1s_A 24 IYLVNGIKLQGQIESFDQFVILLKN 48 (82)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEES
T ss_pred EEEeCCcEEEEEEEEEcceEEEEec
Confidence 6899999999999999999855543
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.06 E-value=0.0053 Score=34.52 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEecCeEEEEEEEEecCeeceEEc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLE 26 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~ 26 (72)
|.|.+|-.++|.+.+||+|+=++-+
T Consensus 26 i~L~nG~~l~G~I~~fD~f~vlL~~ 50 (74)
T 2ylb_A 26 IYLVNGIKLQGQIESFDQFVILLKN 50 (74)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEES
T ss_pred EEEeCCCEEEEEEEEECCcEEEEEC
Confidence 6899999999999999999855543
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=95.99 E-value=0.006 Score=34.78 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.8
Q ss_pred eEEecCeEEEEEEEEecCeeceE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMV 24 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlv 24 (72)
|.|.+|-.++|.+.+||+|+=++
T Consensus 25 I~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 25 IYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp EEETTSCEEEEEEEEECSSEEEE
T ss_pred EEEeCCCEEEEEEEEECCcEEEE
Confidence 78999999999999999998554
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.89 E-value=0.01 Score=33.69 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.1
Q ss_pred eEEecCeEEEEEEEEecCeeceEEcc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
|.|.+|-.++|.+.|||+|+=|+-.+
T Consensus 28 v~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 28 VFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEESS
T ss_pred EEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 68999999999999999998655433
No 30
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.75 E-value=0.013 Score=32.74 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.1
Q ss_pred eEEecCeEEEEEEEEecCeeceEEcc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
|.|.+|-.++|.+.|||+|+=|+-.+
T Consensus 30 v~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 30 IFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEET
T ss_pred EEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 67899999999999999998665443
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=95.22 E-value=0.025 Score=31.98 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.2
Q ss_pred eEEecCeEEEEEEEEecCeeceEEcc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
|.|.+|-.++|.+.+||+|+=++-++
T Consensus 24 I~L~nG~~l~G~I~~fD~f~VlL~~~ 49 (77)
T 1kq1_A 24 VFFLNGFQMKGVIEEYDKYVVSLNSQ 49 (77)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEET
T ss_pred EEEeCCCEEEEEEEEECCcEEEEEEC
Confidence 78999999999999999998665543
No 32
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=94.45 E-value=0.049 Score=32.43 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=22.4
Q ss_pred eEEecCeEEEEEEEEecCeeceEEcc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
|.|.+|-.++|.+.+||+|+=|+-++
T Consensus 26 I~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 26 IYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEESS
T ss_pred EEEeCCCEEEEEEEEECCcEEEEECC
Confidence 78999999999999999998655544
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=85.37 E-value=1.3 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.7
Q ss_pred eEEecCeEEEEEEEEecCeeceEEc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLE 26 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~ 26 (72)
|+|-+|-.++|.+.-||.|+=++.+
T Consensus 26 I~L~tG~~l~G~i~WQD~~cl~L~~ 50 (70)
T 3hfo_A 26 IKLLTGDSLFGTIRWQDTDGLGLVD 50 (70)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEC
T ss_pred EEecCCCEEEEEEEEeCCCEEEEEc
Confidence 7899999999999999999865544
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=79.81 E-value=2.8 Score=23.16 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=21.5
Q ss_pred eEEecCeEEEEEEEEecCeeceEEcc
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
|+|-+|..++|.+.-+|.|+=.+.++
T Consensus 28 I~L~tGd~l~G~i~WQD~~cl~L~~~ 53 (72)
T 3hfn_A 28 IKLVTGDAITGRVLWQDPTCVCIADE 53 (72)
T ss_dssp EEETTSCEEEEEEEEECSSEEEEEC-
T ss_pred EEecCCCEEEEEEEEECCCEEEEEcC
Confidence 78999999999999999998555433
No 35
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=77.64 E-value=2.8 Score=24.84 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.3
Q ss_pred EecCeEEEEEEEEe---cCeeceEEccEEE
Q 035130 4 VKNNTQLLGRVRAF---DRHCNMVLENVRE 30 (72)
Q Consensus 4 l~~gr~~~G~L~~f---D~~mNlvL~d~~E 30 (72)
+++...+.|.|.-| |..|.++|.|++=
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~f 80 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEF 80 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEE
Confidence 45667899998766 9999999999873
No 36
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=75.96 E-value=3.2 Score=25.10 Aligned_cols=27 Identities=11% Similarity=0.356 Sum_probs=22.6
Q ss_pred EecCeEEEEEEEEe---cCeeceEEccEEE
Q 035130 4 VKNNTQLLGRVRAF---DRHCNMVLENVRE 30 (72)
Q Consensus 4 l~~gr~~~G~L~~f---D~~mNlvL~d~~E 30 (72)
+++...+.|.|.-| |..|.++|.|++=
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~f 84 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQV 84 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEE
Confidence 45667899999776 9999999999874
No 37
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=67.67 E-value=12 Score=21.19 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=37.2
Q ss_pred eEEecCeEEEEEEEEecCe-eceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEEEEEeC
Q 035130 2 MSVKNNTQLLGRVRAFDRH-CNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRN 70 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~-mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~~I~~~ 70 (72)
+.|..+-++.|...|+|.. .|+..++-+ + | -..++..++|+.-|++++..
T Consensus 34 f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-T----P--------------iGv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 34 FTLHEGVRVAAHFGATDLDVANFYVSQLQ-T----P--------------IGVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp EEEGGGCEEEEEEEEECTTCCEEEEEEEC-C----T--------------TCCEEEEEEEGGGEEEEEEC
T ss_pred EEEeCCeEEEEEEEecCcccceeEhhhcC-C----C--------------cccchhhhhhcCCEEEEEec
Confidence 5688899999999999987 476665522 1 1 12256889999999999875
No 38
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=65.19 E-value=0.25 Score=29.05 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=16.4
Q ss_pred EEEEEecCeeceEEccEE
Q 035130 12 GRVRAFDRHCNMVLENVR 29 (72)
Q Consensus 12 G~L~~fD~~mNlvL~d~~ 29 (72)
|+...||+-.||.|++|.
T Consensus 35 ~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SCEEECCTTHHHHHHHHH
T ss_pred CeEeechHHHHHHHHHHH
Confidence 578999999999999987
No 39
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=56.92 E-value=14 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=19.2
Q ss_pred ecCeEEEEEEEEecCeeceEEccEEEee
Q 035130 5 KNNTQLLGRVRAFDRHCNMVLENVREMW 32 (72)
Q Consensus 5 ~~gr~~~G~L~~fD~~mNlvL~d~~E~~ 32 (72)
.+.-.++|+|.-||.-. +.|.|+..+.
T Consensus 24 g~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 24 GGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp C----CEEEEEEECSSE-EEEEEEEETT
T ss_pred cCcceeeeehhhcCcce-eehhhHHHHh
Confidence 34456999999999985 6788888764
No 40
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=55.92 E-value=16 Score=19.92 Aligned_cols=33 Identities=15% Similarity=0.351 Sum_probs=25.2
Q ss_pred eEEecCeEEEEEEEEecCeeceEE-ccEEEeeec
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVL-ENVREMWTE 34 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL-~d~~E~~~~ 34 (72)
++-+||+.|-|+++...+.-=||. +|-.|+|..
T Consensus 24 ~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 24 IKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp EECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred EEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 356799999999988877654544 888888864
No 41
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=54.12 E-value=11 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.1
Q ss_pred eEEecCeEEEEEEEEecCeeceEE--ccEE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVL--ENVR 29 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL--~d~~ 29 (72)
|.|++|..++|++..+|. -+|.| .+|.
T Consensus 17 v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~ 45 (125)
T 4a53_A 17 VLLNNDSKARGVITNFDS-SNSILQLRLAN 45 (125)
T ss_dssp EEETTSCEEEEEEEEEET-TTTEEEEEETT
T ss_pred EEECCCCEeeEEEEeecC-CeeEEeccccc
Confidence 689999999999999975 36666 7764
No 42
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=49.35 E-value=18 Score=25.35 Aligned_cols=27 Identities=7% Similarity=0.288 Sum_probs=23.6
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+++.++|...+|.|=.+
T Consensus 92 V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 92 IQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred EEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 567899999999999999999887554
No 43
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=46.96 E-value=16 Score=25.84 Aligned_cols=27 Identities=7% Similarity=0.249 Sum_probs=23.4
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+++.+++.++|...+|.|=.+
T Consensus 115 V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 115 VQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred EEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 567899999999999999999887544
No 44
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=46.69 E-value=24 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=22.5
Q ss_pred eEEe--cCeEEEEEEEEecCeeceEEccEE
Q 035130 2 MSVK--NNTQLLGRVRAFDRHCNMVLENVR 29 (72)
Q Consensus 2 i~l~--~gr~~~G~L~~fD~~mNlvL~d~~ 29 (72)
|.+. +|..++|+..|.|..-.|+|++..
T Consensus 227 V~v~~~~~~~~~G~~~gId~~G~L~v~~~~ 256 (270)
T 3rux_A 227 VRVELPGGQDVVGIARDIDDQGRLCLDVGG 256 (270)
T ss_dssp EEEECTTSCEEEEEEEEECTTSCEEEEETT
T ss_pred EEEEECCCeEEEEEEEEECCCCeEEEEECC
Confidence 3444 578999999999999999997543
No 45
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=39.79 E-value=21 Score=22.04 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.0
Q ss_pred ecCeEEEEEEEEecCe
Q 035130 5 KNNTQLLGRVRAFDRH 20 (72)
Q Consensus 5 ~~gr~~~G~L~~fD~~ 20 (72)
.+.+.++|+|.++|.-
T Consensus 116 ~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 116 DKQKVFEGTLLAFEED 131 (164)
T ss_dssp SSCSEEEEEEEEEETT
T ss_pred CCceEEEEEEEEEeCC
Confidence 4558999999999754
No 46
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=35.43 E-value=27 Score=23.70 Aligned_cols=27 Identities=7% Similarity=0.288 Sum_probs=22.7
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
+.+.+|+.+.+.+.++|....|.|=..
T Consensus 92 V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 92 IQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred EEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 566799999999999999998877444
No 47
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=35.07 E-value=20 Score=22.72 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=23.3
Q ss_pred EEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEE
Q 035130 13 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 65 (72)
Q Consensus 13 ~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~ 65 (72)
+|+||-+|| .++.|..=.++..+++.. ...++++-+||-.|.
T Consensus 41 tLKgfKryW-fv~kDt~LsyYKSkEe~~----------geP~~~inLrGCEVt 82 (165)
T 4bbk_A 41 MLKACKQYW-FVFKDTSIAYFKNKELEQ----------GEPIEKLNLRGCEIV 82 (165)
T ss_dssp ---CCEEEE-EEEETTEEEEESSGGGTT----------SCCSEEEECTTCEEE
T ss_pred ccccceeEE-EEEeCCEEEEEcCHHHhc----------CCCceEEecCccEEe
Confidence 578888887 455555545543322211 234678899997766
No 48
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=33.76 E-value=22 Score=25.07 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=23.3
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.++|...+|.|=.+
T Consensus 106 V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 106 VTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred EEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 567899999999999999999887554
No 49
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=30.43 E-value=38 Score=21.86 Aligned_cols=27 Identities=7% Similarity=0.288 Sum_probs=22.5
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.++|....|.|=..
T Consensus 92 V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 92 IQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred EEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 567799999999999999988877444
No 50
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=29.37 E-value=61 Score=20.70 Aligned_cols=18 Identities=6% Similarity=0.272 Sum_probs=16.7
Q ss_pred EEEEEEEecCeeceEEcc
Q 035130 10 LLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 10 ~~G~L~~fD~~mNlvL~d 27 (72)
++|+..|.|..-.|+|++
T Consensus 199 ~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 199 ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred EEEEEEEECCCCeEEEEE
Confidence 999999999999999965
No 51
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=28.75 E-value=41 Score=22.22 Aligned_cols=27 Identities=4% Similarity=0.106 Sum_probs=21.9
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.+||...+|.|=..
T Consensus 70 V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 70 VALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred EEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 456688999999999999988887444
No 52
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=28.48 E-value=37 Score=19.59 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=11.4
Q ss_pred eEEecCeEEEEEE
Q 035130 2 MSVKNNTQLLGRV 14 (72)
Q Consensus 2 i~l~~gr~~~G~L 14 (72)
|.|.||+.+.||+
T Consensus 33 i~l~DGs~l~GTv 45 (101)
T 2e12_A 33 IELDDGSMIAGTV 45 (101)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEEcCCCeEeeee
Confidence 6789999999986
No 53
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=27.37 E-value=47 Score=20.90 Aligned_cols=27 Identities=4% Similarity=0.150 Sum_probs=22.0
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.++|....|.|=..
T Consensus 81 V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 81 VALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred EEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 456789999999999999988877443
No 54
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=27.29 E-value=70 Score=17.98 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.4
Q ss_pred EecCe-EEEEEEEEecCe-eceEEccEE
Q 035130 4 VKNNT-QLLGRVRAFDRH-CNMVLENVR 29 (72)
Q Consensus 4 l~~gr-~~~G~L~~fD~~-mNlvL~d~~ 29 (72)
.+++- .|+|.|...|.. -|+.|.+|.
T Consensus 16 c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 16 CGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 34555 899999999988 589999995
No 55
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=26.93 E-value=21 Score=22.75 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=24.3
Q ss_pred EEEEecCeeceEEccEEEeeeccCCCcCCccccccCceeeeeCeEEEeCCcEE
Q 035130 13 RVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 65 (72)
Q Consensus 13 ~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~iRG~nV~ 65 (72)
+|+||-+|| .++.|..=.++..+++.. ...++.+-+||-.|.
T Consensus 62 tLKgyKryW-Fv~kd~~LsyYKskEe~~----------geP~~~I~LrGCEVt 103 (173)
T 4f7h_A 62 TLKGYKQYW-CTFKDTSISCYKSKEESS----------GTPAHQMNLRGCEVT 103 (173)
T ss_dssp BCCCCEEEE-EEEETTEEEEESCGGGCS----------SCCSEEEECTTCEEE
T ss_pred ccccceeEE-EEEeCCEEEEEcCHhHhc----------CCCceEEecCceEEe
Confidence 466777777 455555555553222211 234788889997766
No 56
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=25.63 E-value=50 Score=21.93 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=21.8
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.++|....|.|=..
T Consensus 75 V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 75 VRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred EEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 456688999999999999888877443
No 57
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=24.93 E-value=48 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=21.8
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.+||...+|.|=..
T Consensus 68 V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 68 VTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp EEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred EEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 456688899999999999988887444
No 58
>2jub_A IPI, internal protein I; T4 phage, solution, endonuclease inhibitor; NMR {Enterobacteria phage T4}
Probab=24.83 E-value=5.9 Score=21.41 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.6
Q ss_pred CeEEecCeEEEEEEEEec
Q 035130 1 MMSVKNNTQLLGRVRAFD 18 (72)
Q Consensus 1 ~i~l~~gr~~~G~L~~fD 18 (72)
||+|-||.++.|++--=|
T Consensus 19 mislvdgeeikgtvylgd 36 (76)
T 2jub_A 19 MISLVDGEEIKGTVYLGD 36 (76)
T ss_dssp EECTTTCCEEETCSSTTT
T ss_pred eEEeecccceeeeEEecC
Confidence 788889999998864333
No 59
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=23.71 E-value=60 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=22.0
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
|.+.+|+.+.+.+.++|....|.|=..
T Consensus 91 V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 91 VELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred EEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 456789999999999999888877443
No 60
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=23.30 E-value=66 Score=21.44 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=17.4
Q ss_pred CeEEEEEEEEecCeeceEEcc
Q 035130 7 NTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 7 gr~~~G~L~~fD~~mNlvL~d 27 (72)
+..+.|.+.-.|.|-|++..=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 446899999999999998643
No 61
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=22.63 E-value=71 Score=16.75 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=24.0
Q ss_pred EEecCeEEEEEEEEecCe---eceEEccEEEeeec
Q 035130 3 SVKNNTQLLGRVRAFDRH---CNMVLENVREMWTE 34 (72)
Q Consensus 3 ~l~~gr~~~G~L~~fD~~---mNlvL~d~~E~~~~ 34 (72)
.-.||+.|-|+++..|+. +=+..+|-.|.|..
T Consensus 13 rwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 13 RWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp ECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred EecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 457999999999998765 44555777777753
No 62
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=22.54 E-value=1e+02 Score=20.50 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.1
Q ss_pred ecCeEEEEEEEEecCeeceEEcc
Q 035130 5 KNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 5 ~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
.++..++|+..|.|..-.|+|++
T Consensus 280 ~~~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 280 IGDKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEE
T ss_pred ECCcEEEEEEEEECCCCeEEEEE
Confidence 45678999999999999999965
No 63
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=22.31 E-value=29 Score=21.51 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=11.4
Q ss_pred EEecCeEEEEEEEEecCe
Q 035130 3 SVKNNTQLLGRVRAFDRH 20 (72)
Q Consensus 3 ~l~~gr~~~G~L~~fD~~ 20 (72)
++++||.+...|.|.|-|
T Consensus 404 Vi~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 404 VMKDGRLFVNELEGHEGH 421 (426)
T ss_dssp EEETTEEEEECCC-----
T ss_pred EEECCEEEECCccCCCCC
Confidence 578999999999888876
No 64
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=22.16 E-value=70 Score=21.34 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=17.4
Q ss_pred CeEEEEEEEEecCeeceEEcc
Q 035130 7 NTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 7 gr~~~G~L~~fD~~mNlvL~d 27 (72)
+..+.|.+.-.|.|-|++..=
T Consensus 167 ~~~i~g~V~~iD~FGN~iTnI 187 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTNI 187 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 446899999999999998643
No 65
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=22.11 E-value=1e+02 Score=19.59 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.1
Q ss_pred EEEEEEEecCeeceEEccE
Q 035130 10 LLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 10 ~~G~L~~fD~~mNlvL~d~ 28 (72)
++|+..|.|..-.|+|++.
T Consensus 202 ~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 202 RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp EEEEEEEECTTCCEEEECS
T ss_pred EEEEEEEECCCCeEEEEeC
Confidence 8999999999999999643
No 66
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=21.99 E-value=85 Score=21.12 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.2
Q ss_pred ecCeEEEEEEEEecCeeceEEcc
Q 035130 5 KNNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 5 ~~gr~~~G~L~~fD~~mNlvL~d 27 (72)
.++..++|+..|.|..-.|+|++
T Consensus 286 ~~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 286 ENDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CC-CEEEEEEEEECTTSCEEEEE
T ss_pred ECCeEEEEEEEEECCCCEEEEEE
Confidence 35678999999999999999964
No 67
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=21.90 E-value=49 Score=24.24 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEe-cCeEEEEEEEEecCeeceEEcc
Q 035130 2 MSVK-NNTQLLGRVRAFDRHCNMVLEN 27 (72)
Q Consensus 2 i~l~-~gr~~~G~L~~fD~~mNlvL~d 27 (72)
|.+. ||+++.+++.++|....|.|=.
T Consensus 101 V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 101 VKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred EEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 3443 8999999999999999888744
No 68
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=21.13 E-value=71 Score=21.39 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEecCeEEEEEEEEecCeeceEEccE
Q 035130 2 MSVKNNTQLLGRVRAFDRHCNMVLENV 28 (72)
Q Consensus 2 i~l~~gr~~~G~L~~fD~~mNlvL~d~ 28 (72)
+.+.+|+.+.+.+.++|....|.|=..
T Consensus 81 V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 81 VTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp EECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred EEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 456789999999999999988877443
Done!