Query 035132
Match_columns 72
No_of_seqs 115 out of 1101
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10197 gamma-aminobutyrate t 99.6 6E-15 1.3E-19 110.7 6.2 65 2-69 1-70 (446)
2 PRK10836 lysine transporter; P 99.5 3.8E-15 8.3E-20 112.7 4.0 65 2-69 24-94 (489)
3 PRK11021 putative transporter; 99.5 4.4E-15 9.5E-20 109.5 3.5 65 2-69 8-77 (410)
4 PRK10249 phenylalanine transpo 99.5 2.7E-14 5.8E-19 107.5 5.8 65 2-69 30-99 (458)
5 PRK15049 L-asparagine permease 99.5 2.3E-14 4.9E-19 109.5 5.1 65 2-69 37-106 (499)
6 TIGR00906 2A0303 cationic amin 99.5 1.4E-14 3.1E-19 112.4 2.9 66 2-69 37-107 (557)
7 PRK11387 S-methylmethionine tr 99.5 3.5E-14 7.5E-19 106.9 3.8 65 2-69 23-93 (471)
8 PRK10746 putative transport pr 99.5 5.2E-14 1.1E-18 106.4 4.5 65 2-69 19-88 (461)
9 PRK10238 aromatic amino acid t 99.4 7.3E-14 1.6E-18 105.1 4.3 65 2-69 21-90 (456)
10 PRK10435 cadB lysine/cadaverin 99.4 6.6E-14 1.4E-18 104.4 3.6 63 2-69 14-81 (435)
11 PRK10580 proY putative proline 99.4 1.1E-13 2.3E-18 103.7 3.4 65 2-69 18-87 (457)
12 TIGR01773 GABAperm gamma-amino 99.4 1.4E-13 3.1E-18 102.5 4.0 65 2-69 21-90 (452)
13 KOG1286 Amino acid transporter 99.4 1.2E-13 2.7E-18 108.7 1.5 67 1-69 38-110 (554)
14 PRK10655 potE putrescine trans 99.4 3.3E-13 7.2E-18 100.1 3.5 64 2-69 15-83 (438)
15 PRK10644 arginine:agmatin anti 99.4 4.4E-13 9.5E-18 99.9 3.5 64 2-69 17-85 (445)
16 KOG1287 Amino acid transporter 99.3 3.7E-12 8E-17 99.5 5.7 66 1-69 20-92 (479)
17 TIGR03810 arg_ornith_anti argi 99.3 1.3E-12 2.9E-17 98.2 3.1 65 2-69 10-81 (468)
18 TIGR00913 2A0310 amino acid pe 99.3 5E-12 1.1E-16 94.7 4.0 65 2-69 11-82 (478)
19 TIGR00905 2A0302 transporter, 99.2 3.3E-12 7.1E-17 96.3 2.9 65 2-69 16-87 (473)
20 PRK11357 frlA putative fructos 99.2 2.9E-12 6.4E-17 95.4 2.1 66 2-69 17-88 (445)
21 PRK11049 D-alanine/D-serine/gl 99.2 9.2E-12 2E-16 93.9 3.6 64 2-68 29-97 (469)
22 TIGR00911 2A0308 L-type amino 99.2 1.4E-11 3E-16 93.3 4.5 65 2-69 51-122 (501)
23 COG1113 AnsP Gamma-aminobutyra 99.2 2E-11 4.4E-16 95.1 3.3 65 2-69 22-91 (462)
24 COG0833 LysP Amino acid transp 99.1 3.3E-11 7.1E-16 95.4 2.7 65 2-69 53-123 (541)
25 TIGR00909 2A0306 amino acid tr 99.1 7.8E-11 1.7E-15 86.7 2.3 65 2-69 12-81 (429)
26 TIGR00837 araaP aromatic amino 99.0 1.1E-09 2.4E-14 79.9 6.4 67 1-70 3-74 (381)
27 TIGR03428 ureacarb_perm permea 99.0 3E-10 6.5E-15 85.7 2.9 63 4-69 24-92 (475)
28 PF00324 AA_permease: Amino ac 98.9 3E-10 6.6E-15 85.3 1.7 65 2-69 4-74 (478)
29 PF13520 AA_permease_2: Amino 98.9 1.4E-09 3.1E-14 79.5 4.3 64 2-70 8-77 (426)
30 TIGR00907 2A0304 amino acid pe 98.8 1.8E-09 3.9E-14 81.2 2.4 57 11-70 31-93 (482)
31 TIGR00908 2A0305 ethanolamine 98.8 6.3E-09 1.4E-13 77.4 3.5 64 2-69 16-85 (442)
32 TIGR00930 2a30 K-Cl cotranspor 98.7 1.6E-08 3.6E-13 83.8 4.6 63 5-69 89-157 (953)
33 COG0531 PotE Amino acid transp 98.4 9.9E-08 2.1E-12 69.8 2.2 63 3-69 23-90 (466)
34 TIGR00912 2A0309 spore germina 98.4 1.1E-07 2.3E-12 69.0 2.3 64 2-69 10-78 (359)
35 PRK15238 inner membrane transp 98.4 1.8E-07 4E-12 71.1 3.3 64 2-71 16-86 (496)
36 TIGR03813 put_Glu_GABA_T putat 98.2 9.8E-07 2.1E-11 66.6 3.5 45 23-69 26-76 (474)
37 PHA02764 hypothetical protein; 98.0 5.6E-06 1.2E-10 63.7 3.1 44 24-69 43-91 (399)
38 PF03222 Trp_Tyr_perm: Tryptop 97.2 0.00049 1.1E-08 52.1 4.1 66 2-71 10-81 (394)
39 TIGR00910 2A0307_GadC glutamat 97.1 0.0003 6.6E-09 54.3 2.6 54 12-70 21-81 (507)
40 KOG1289 Amino acid transporter 96.7 0.0023 4.9E-08 51.5 4.4 44 26-71 82-130 (550)
41 PRK09664 tryptophan permease T 96.4 0.0059 1.3E-07 47.3 4.5 66 2-71 16-87 (415)
42 TIGR00814 stp serine transport 96.4 0.0025 5.5E-08 48.5 2.5 65 3-71 11-82 (397)
43 PRK10483 tryptophan permease; 96.3 0.005 1.1E-07 47.7 3.8 65 2-70 18-88 (414)
44 PRK15132 tyrosine transporter 96.1 0.0096 2.1E-07 45.7 4.3 65 2-70 10-80 (403)
45 COG0814 SdaC Amino acid permea 95.9 0.0071 1.5E-07 46.1 3.1 65 3-71 17-88 (415)
46 PRK13629 threonine/serine tran 94.6 0.089 1.9E-06 41.4 5.4 64 4-71 28-98 (443)
47 TIGR00796 livcs branched-chain 93.0 0.24 5.2E-06 37.8 5.1 59 7-69 7-68 (378)
48 PF03845 Spore_permease: Spore 92.4 0.2 4.4E-06 36.1 3.7 62 4-70 11-77 (320)
49 PF01235 Na_Ala_symp: Sodium:a 84.2 1.9 4E-05 33.8 4.3 65 4-69 28-102 (416)
50 TIGR00835 agcS amino acid carr 65.1 5.3 0.00012 31.3 2.2 65 3-69 55-130 (425)
51 PF01490 Aa_trans: Transmembra 54.8 5.5 0.00012 28.8 0.7 64 4-71 12-84 (409)
52 PF02953 zf-Tim10_DDP: Tim10/D 52.4 10 0.00022 21.6 1.4 16 57-72 13-28 (66)
53 PTZ00206 amino acid transporte 39.0 91 0.002 24.1 5.2 62 5-69 70-135 (467)
54 COG1115 AlsT Na+/alanine sympo 36.3 38 0.00083 27.1 2.8 66 3-69 71-146 (452)
55 PLN03074 auxin influx permease 35.6 99 0.0022 24.2 5.0 46 6-55 57-112 (473)
56 PF10155 DUF2363: Uncharacteri 34.9 26 0.00056 23.1 1.4 16 57-72 51-66 (126)
57 KOG3489 Mitochondrial import i 30.2 40 0.00087 21.4 1.7 15 58-72 28-42 (86)
58 COG1428 Deoxynucleoside kinase 26.1 33 0.00071 25.0 0.9 19 2-20 6-24 (216)
59 PRK00733 hppA membrane-bound p 21.5 2E+02 0.0043 24.4 4.6 37 26-67 572-610 (666)
No 1
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.56 E-value=6e-15 Score=110.66 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=60.4
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|+|++||..++ .+||..+++|+++ +.++||+||+ ++ +|++||.|+|++++.|+-|
T Consensus 1 ~~~ig~~IGsGif~~~g~~~~-~aG~~~ll~~~i~gi~~~~~al~~aEL~-s~-~P~~Gg~y~y~~~~~G~~~ 70 (446)
T PRK10197 1 MLSIAGVIGASLFVGSSVAIA-EAGPAVLLAYLFAGLLVVMIMRMLAEMA-VA-TPDTGSFSTYADKAIGRWA 70 (446)
T ss_pred CeeecchhHhHHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHcChHH
Confidence 589999999999999999885 6899999999998 8899999999 98 9999999999999999754
No 2
>PRK10836 lysine transporter; Provisional
Probab=99.54 E-value=3.8e-15 Score=112.65 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=59.5
Q ss_pred eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||++||.+++ .+||. ++++|+++ ++++||+||+ ++ +|++||.|.|+++|.++-|
T Consensus 24 ~l~vG~~IGsGif~~~g~~~~-~aGp~~~l~a~~i~g~~~~~~al~~aEL~-s~-~P~sGg~y~y~~~~~g~~~ 94 (489)
T PRK10836 24 MIAIGGSIGTGLFVASGATIS-QAGPGGALLSYMLIGLMVYFLMTSLGELA-AY-MPVSGSFATYGQNYVEEGF 94 (489)
T ss_pred HHHHhhhhhhhhhHhhhHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCCCHHHHHHHHcChHH
Confidence 578999999999999999986 68995 78899998 8999999999 98 9999999999999998765
No 3
>PRK11021 putative transporter; Provisional
Probab=99.53 E-value=4.4e-15 Score=109.47 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=60.0
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++.+|+|||+|||++||.+++ .+||..+++|+++ +.++||+||+ ++ +|++||.|.|+++..|+.|
T Consensus 8 ~l~~g~~IGsGif~~~g~~~~-~aG~~~~~~~~i~~~~~~~~al~~aEl~-s~-~P~aGG~y~y~~~~~G~~~ 77 (410)
T PRK11021 8 GLLSTSLLGTGVFAVPALAAL-VAGNNSLWAWPLLILLIFPIAIVFARLG-RH-FPHAGGPAHFVGMAFGPRL 77 (410)
T ss_pred HHHHHHHHhhHHHHhHHHHHH-hcCchHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHhHHHHhCchh
Confidence 467899999999999999885 6899999999998 8999999999 98 9999999999999998865
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=99.50 E-value=2.7e-14 Score=107.49 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=60.5
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|||++||..++ .+||+.+++|+++ +.++||+||+ ++ +|++||.|.|+++++|+-|
T Consensus 30 ~i~ig~~IGsGif~~~g~~~~-~aGp~~~l~~li~~~~~~~~~~~~aEl~-~~-~P~~Gg~~~y~~~~~g~~~ 99 (458)
T PRK10249 30 LIALGGAIGTGLFLGIGPAIQ-MAGPAVLLGYGVAGIIAFLIMRQLGEMV-VE-EPVSGSFAHFAYKYWGPFA 99 (458)
T ss_pred hhhhhcccchhHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhChHH
Confidence 678999999999999999885 6999999999998 9999999999 98 9999999999999999854
No 5
>PRK15049 L-asparagine permease; Provisional
Probab=99.50 E-value=2.3e-14 Score=109.51 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=60.1
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||++||.+++ .+||..+++|+++ +.++||+||+ ++ +|++||.|.|++++.|+-+
T Consensus 37 ~i~~G~~IGsGiF~~~g~~~~-~aGp~~il~~li~~i~~~~v~~slaELa-s~-~P~aGg~y~y~~~~~G~~~ 106 (499)
T PRK15049 37 MIAIGGAIGTGLFLGAGARLQ-MAGPALALVYLICGLFSFFILRALGELV-LH-RPSSGSFVSYAREFLGEKA 106 (499)
T ss_pred HHhhhccccchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhCcHh
Confidence 578999999999999999885 7999999999998 8899999999 98 9999999999999998754
No 6
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.48 E-value=1.4e-14 Score=112.44 Aligned_cols=66 Identities=35% Similarity=0.616 Sum_probs=61.0
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|.|||+|||+++|.++.+.+||+++++|+++ +.++||+|++ ++ +|++||.|.|.++-.|+.|
T Consensus 37 ~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaEla-s~-~P~sGg~Y~y~~~~~G~~~ 107 (557)
T TIGR00906 37 ALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFG-AR-VPKAGSAYLYSYVTVGELW 107 (557)
T ss_pred HHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCcceeeHHHHhCcHH
Confidence 56889999999999999988778999999999998 8999999999 98 9999999999999988764
No 7
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.46 E-value=3.5e-14 Score=106.85 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=59.0
Q ss_pred eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||++||.+++ .+|| +++++|+++ ++++||+||+ ++ +|++||.|.|+++..|+-|
T Consensus 23 ~l~ig~~IG~Gif~~~g~~~~-~~G~~~~~l~~~i~~~~~~~~~~~~aELa-s~-~P~aGG~y~y~~~~~g~~~ 93 (471)
T PRK11387 23 MLSLGGVIGTGLFFNTGYIIS-TTGAAGTLLAYLIGALVVYLVMQCLGELS-VA-MPETGAFHVYAARYLGPAT 93 (471)
T ss_pred HHHHHhhhhhHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCCCHHHHHHHhcChHH
Confidence 578999999999999999886 6887 688899998 8999999999 98 9999999999999988764
No 8
>PRK10746 putative transport protein YifK; Provisional
Probab=99.46 E-value=5.2e-14 Score=106.36 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=60.1
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|+|+.||...+ .+||+++++|+++ ++++|++||+ ++ +|++||.++|+++++|+-|
T Consensus 19 ~i~ig~~IGtGlf~~~g~~l~-~aGp~~~l~~~i~g~~~~~v~~~~aEl~-~~-~P~sGg~~~y~~~~~g~~~ 88 (461)
T PRK10746 19 LIALGGTIGVGLFMGAASTLK-WAGPSVLLAYIIAGLFVFFIMRSMGEML-FL-EPVTGSFAVYAHRYMSPFF 88 (461)
T ss_pred HHHHHhhhhhhHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHhCcHH
Confidence 578999999999999999885 6999999999998 8899999999 88 9999999999999999865
No 9
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.44 E-value=7.3e-14 Score=105.08 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=59.6
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|+|+.||.+++ .+||.++++|+++ ++++|++|++ ++ +|.+||.|.|++++.|+-+
T Consensus 21 ~i~ig~~IGsGif~~~g~~~~-~~Gp~~i~~~~i~gi~~~~v~~s~aEl~-s~-~P~aGg~y~~~~~~~g~~~ 90 (456)
T PRK10238 21 LIALGGAIGTGLFLGSASVIQ-SAGPGIILGYAIAGFIAFLIMRQLGEMV-VE-EPVAGSFSHFAYKYWGSFA 90 (456)
T ss_pred HHHhhccccchHHHhhHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHcCcHH
Confidence 578999999999999999986 6899999999998 8999999999 98 9999999999999988743
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.44 E-value=6.6e-14 Score=104.44 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=55.8
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||.+|+.++ + +||..+++|+++ +.++||+||+ ++ +|++||.|+|+++ .|+-|
T Consensus 14 ~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~-s~-~P~~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 14 GVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLA-TK-NPQQGGPIAYAGE-ISPAF 81 (435)
T ss_pred HHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCChhHHHHH-HCcHH
Confidence 46789999999999999875 3 799999999998 8999999999 98 9999999999998 56543
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.42 E-value=1.1e-13 Score=103.71 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=59.8
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|+|+.||..++ .+||..+++|+++ +.++||+||+ ++ +|++||.|.|+++.+|+.+
T Consensus 18 ~i~vg~~IG~Gif~~~g~~~~-~aG~~~~l~~~i~~i~~~~~a~~~aEl~-s~-~P~~Gg~y~y~~~~~G~~~ 87 (457)
T PRK10580 18 FMALGSAIGTGLFYGSADAIK-MAGPSVLLAYIIGGVAAYIIMRALGEMS-VH-NPAASSFSRYAQENLGPLA 87 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCCCHHHHHHHHcCcHH
Confidence 467899999999999999875 7999999999998 8899999999 98 9999999999999998865
No 12
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.41 E-value=1.4e-13 Score=102.52 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|+|++||...+ .+||..+++|+++ +.++||+||+ ++ +|++||.|+|+++..|+-+
T Consensus 21 ~i~ig~~IGsGif~~~g~~~~-~~G~~~~i~~~i~~v~~~~~a~~~aEl~-s~-~P~~Gg~~~~~~~~~g~~~ 90 (452)
T TIGR01773 21 MLSIAGVIGAGLFVGSGSAIA-SAGPAALLAYLLAGLLVVFIMRMLGEMA-VA-NPDTGSFSTYADDAIGRWA 90 (452)
T ss_pred HHHHhhhhhchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCCHHHHHHHHhCcHH
Confidence 467899999999999999886 6899988999998 9999999999 98 9999999999999998754
No 13
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.37 E-value=1.2e-13 Score=108.66 Aligned_cols=67 Identities=18% Similarity=0.341 Sum_probs=62.5
Q ss_pred CeEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhh
Q 035132 1 MNKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCW 69 (72)
Q Consensus 1 ~~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~ 69 (72)
+++++|++||+|+|+.+|.++++.+||+++++|+++ ++++||+|++ ++ +|+ +|+++.|+.++++.-|
T Consensus 38 ~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~-~~-~P~~aGs~~~ya~~~i~e~~ 110 (554)
T KOG1286|consen 38 QMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFA-VR-FPVSAGSFYTYAYRFVGESL 110 (554)
T ss_pred EEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHh-ee-cccccccceeeeeeeeCcHH
Confidence 479999999999999999999988888999999998 9999999999 99 999 5999999999998876
No 14
>PRK10655 potE putrescine transporter; Provisional
Probab=99.37 E-value=3.3e-13 Score=100.07 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=57.2
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||.+|+.+. + +||..+++|+++ +.++||+||+ ++ +|++||.|+|+++..|+-+
T Consensus 15 ~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~-~~-~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 15 ILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCG-MF-SRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred HHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHh-hh-CCCCCchHHHHHHHcCcch
Confidence 46789999999999999865 3 799888999998 7899999999 98 9999999999999988754
No 15
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.36 E-value=4.4e-13 Score=99.94 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=55.8
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||.+|+.+++ .||..+++|+++ ..+++|+||+ ++ +|++||.|+|+++..|+-+
T Consensus 17 ~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~-s~-~P~aGG~y~~~~~~~g~~~ 85 (445)
T PRK10644 17 LMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMS-SL-DPSPGGSYAYARRCFGPFL 85 (445)
T ss_pred HHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCChhHHHHHHcCchH
Confidence 467899999999999998764 366777889886 8899999999 98 9999999999999887653
No 16
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.30 E-value=3.7e-12 Score=99.51 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=53.4
Q ss_pred CeEeecceecchhhhhhHHHHHhccch-HHHH-HHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 1 MNKSVDSTLGAGAYILVGTVAREHSGP-ALTL-SFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 1 ~~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~l-a~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
+.+.+|.|||+|||++|..+.+ .+|+ +.-+ -|++. .+++||+||+ ++ +|++||+|.|+....|+-|
T Consensus 20 v~livg~iIGsGIFvsp~~Vl~-~~gsvg~sL~iWv~~gi~s~~galcyaELG-T~-ipksGgd~ayi~~afg~~~ 92 (479)
T KOG1287|consen 20 VSLIVGNIIGSGIFVSPKGVLA-NTGSVGLSLIIWVFCGIISIIGALCYAELG-TS-IPKSGGDYAYISEAFGPFP 92 (479)
T ss_pred eeEEEEeeEecccccCcHHHHH-cCCchhHHHHHHHHHHHHHHHHHHHHHHHh-cc-ccCCCcchhhHHHHhccch
Confidence 3578999999999999999986 5665 2222 23333 9999999999 88 9999999999999887654
No 17
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.30 E-value=1.3e-12 Score=98.22 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=56.7
Q ss_pred eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCC-CcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSL-AICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~-Gg~~~~~~~~~~~~~ 69 (72)
++++|+|||+|||.+|+.+++ .+||. .+++|+++ +.++||+||+ ++ +|++ ||.|+|+++..|+-+
T Consensus 10 ~l~vg~~IGsGif~~~~~~~~-~ag~~~~l~~w~i~~~~~~~~al~~aeL~-s~-~P~~gGG~y~y~~~~fG~~~ 81 (468)
T TIGR03810 10 ALVVGSMIGSGIFSLPSDMAA-GAAAGAVLIGWVITGVGMLALAFSFQNLA-NK-KPELDGGVYSYAKAGFGPFM 81 (468)
T ss_pred HHHHHhHHhhHHHHhHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCCChhhhHHhHcCcHH
Confidence 467899999999999999885 68885 67789888 8899999999 98 9997 599999999888743
No 18
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.25 E-value=5e-12 Score=94.70 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=56.3
Q ss_pred eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCC-CcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSL-AICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~-Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|||.+++..++ .+||. .+++|+++ +.++||+||+ ++ +|++ |+.++|++++.|+.|
T Consensus 11 ~l~vg~~IGsGif~~~~~~~~-~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~-s~-~P~~gG~~~~~~~~~~g~~~ 82 (478)
T TIGR00913 11 MIALGGTIGTGLLVGSGTALA-TGGPAGLLIGYAIMGSIIYCVMQSLGEMA-TF-YPVVSGSFATYASRFVDPAF 82 (478)
T ss_pred HHHHhccccchhhhcchhHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCCHHHHHHHHcCcHH
Confidence 467899999999999999986 68984 68899988 8999999999 98 9954 567789999998765
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.25 E-value=3.3e-12 Score=96.25 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=57.2
Q ss_pred eEeecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|||..|+.+++ .+||. .+++|+++ +.+++|+|++ ++ +|+ +||.|+|+++-.|+-+
T Consensus 16 ~l~ig~vIGsGif~~~~~~~~-~~g~~~~~~~wli~~~~~~~~al~~aEl~-s~-~P~~sGG~y~y~~~~~G~~~ 87 (473)
T TIGR00905 16 ALVIGSMIGSGIFSLPQNLAS-VAGPGAVIIGWIITGVGMLALAFVFAILA-TK-KPELDGGIYAYAREGFGPYI 87 (473)
T ss_pred HHHHHHHHhHHHHHhHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCCChhhhHHhHccccc
Confidence 467899999999999999875 68885 67889998 8899999999 98 999 9999999999888754
No 20
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.24 E-value=2.9e-12 Score=95.36 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=55.8
Q ss_pred eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|.+||+|||.+++.++++..+| ..+++|+++ ..++||+||+ ++ +|++||.|.|+++..|+.+
T Consensus 17 ~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~-s~-~P~~GG~y~y~~~~~g~~~ 88 (445)
T PRK11357 17 AIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELS-TA-YPENGADYVYLKNAGSRPL 88 (445)
T ss_pred HHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCCceeeHHHhcCChh
Confidence 46788999999999999987643334 367788887 8999999999 98 9999999999999888754
No 21
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.21 E-value=9.2e-12 Score=93.89 Aligned_cols=64 Identities=13% Similarity=0.161 Sum_probs=57.9
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMC 68 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~ 68 (72)
++++|++||+|+|+.||..++ .+||+.+++|+++ +.++|++|++ +. .|+.|+.++|+++..|+-
T Consensus 29 ~i~vG~~IGsGif~~~g~~~~-~aGp~~i~~~~i~~i~~~~~~~s~aEl~-s~-~~~~~~~~~ya~~~~g~~ 97 (469)
T PRK11049 29 LIAIGGAIGTGLFMGSGKTIS-LAGPSIIFVYMIIGFMLFFVMRAMGELL-LS-NLEYKSFSDFASDLLGPW 97 (469)
T ss_pred HHHHhhHHHhHHHHHhhHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCCCcHHHHHHHHhCcH
Confidence 467999999999999999985 6999988899887 7899999999 87 999999999999998874
No 22
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.21 E-value=1.4e-11 Score=93.26 Aligned_cols=65 Identities=9% Similarity=0.130 Sum_probs=55.6
Q ss_pred eEeecceecchhhhhhHHHHHhccchH--HHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPA--LTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~--~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|++||+|||.+|+.+++ .+||. .+++|+++ ..++||+||+ ++ +|++||.|+|+++..|+-+
T Consensus 51 ~l~vg~iiGsGif~~~~~~~~-~~G~~g~~~~~~ii~~i~~~~~al~~aELa-s~-~P~sGG~y~~~~~~~g~~~ 122 (501)
T TIGR00911 51 GIIVGTIIGSGIFVSPKGVLK-NAGSVGLALIMWAVCGIFSIVGALVYAELG-TT-IPKSGGEYNYILEVFGPLL 122 (501)
T ss_pred HhheeceEEeeEeecHHHHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCchhhhHHhHhCCHH
Confidence 567899999999999999886 57763 34677776 8899999999 98 9999999999999988754
No 23
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.16 E-value=2e-11 Score=95.11 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=60.4
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+.||+|.|+.+|..++ .+||+++++|+++ +++.+.+||. .. .|++|++.+|+++|+|..+
T Consensus 22 lIAiGGaIGtGLFlGSg~~I~-~AGPSvlLaY~I~G~~~f~iMRaLGEm~-~~-~p~~gSF~~~a~~~lG~~A 91 (462)
T COG1113 22 LIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFLIMRALGEML-VA-NPVSGSFSDYARKYLGPWA 91 (462)
T ss_pred HHHHhhhhhhhhhcccchhhh-hhCcHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCcHHHHHHHHhcchH
Confidence 578999999999999999995 7999999999999 9999999999 76 9999999999999998754
No 24
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.11 E-value=3.3e-11 Score=95.38 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=59.3
Q ss_pred eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
|+++|+.||+|.|+.+|...+ .+|| +++++|++. +++.|.+||+ +. +|.+|++..|+++|++..|
T Consensus 53 MIAiGG~IGTGLfvgsG~~l~-~aGP~g~li~y~i~G~~vy~vm~sLGEma-~~-~P~sGsF~~ya~rfvdpa~ 123 (541)
T COG0833 53 MIAIGGAIGTGLFVGSGKALS-QAGPAGLLIAYLIIGIMVYFVMQSLGELA-VF-YPVSGSFSTYATRFVDPAF 123 (541)
T ss_pred HHHhccccccceeeecchhhh-ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCchhhhhhhhcCchH
Confidence 688999999999999999986 6999 677789887 8999999999 88 9999999999999998775
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.05 E-value=7.8e-11 Score=86.74 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=57.7
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++.++.+||+|+|.+|+.+.. .+||..+++|+++ ..+++|+|++ ++ +|++||.|+|.++..||-+
T Consensus 12 ~~~i~~~ig~gi~~~~~~~~~-~~G~~~~l~~li~~~~~~~~a~~~~el~-~~-~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 12 MLGIGAMIGTGIFVVTGIAAG-KAGPAVILSFVLAGLTALFIALVYAELA-AM-LPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred HHHHhhhhcchHHHhHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHH-hh-cCCCCcceeeHHHHhCcHH
Confidence 356789999999999999875 6899998999887 7899999999 98 9999999999999988754
No 26
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.99 E-value=1.1e-09 Score=79.87 Aligned_cols=67 Identities=13% Similarity=-0.012 Sum_probs=54.4
Q ss_pred CeEeecceecchhhhhhHHHHHhccch-HHH---HHHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 1 MNKSVDSTLGAGAYILVGTVAREHSGP-ALT---LSFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 1 ~~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~---la~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
+++.+|++||+|||.+|+..++ ..++ +.+ ++|++. ..+++|+|+. ++ +|+++|.++|.++..||-++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~-~g~~~~~~~~i~~~~~~~~~~l~~~el~-~~-~p~~~~~~~~~~~~~G~~~g 74 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAG-AWFIWTLLLLILLWFLMLHSGLLLLEVY-LT-YPGGASFNTIAKDLLGKTGN 74 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhCHHHH
Confidence 3688999999999999998774 4433 332 244445 9999999999 88 99999999999999998764
No 27
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.97 E-value=3e-10 Score=85.68 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=55.3
Q ss_pred eecce-ecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 4 SVDST-LGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 4 ~vG~~-IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
+++.+ +++|||.+++.... .+||+.+++|+++ +.+++|+||+ ++ +|++||.|+|+++..|+-|
T Consensus 24 ~~~~~~~~~gi~~~~~~~~~-~~Gp~~~~~~li~~i~~l~~als~aEL~-s~-~P~aGG~Y~~~~~~~g~~~ 92 (475)
T TIGR03428 24 GFSFVSILTTIFQLFGFGYG-FGGPAFFWTWPVVFVGQLLVALNFAELA-AR-YPISGAIYQWSRRMGGEVI 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCCHHHHHHHHcCccc
Confidence 44543 89999999999885 7999999999988 8999999999 98 9999999999999988743
No 28
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.94 E-value=3e-10 Score=85.26 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=59.0
Q ss_pred eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|+++|+|+|+..+.++. .+|| +.+++|+++ +.+.|++|++ .+ +|++||.|+|+++++|+-+
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~-~~G~~~~~la~li~~i~~~~~~~~~~ems-~~-~p~~Gg~y~y~~~~lg~~~ 74 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIA-AAGPGGAPLAYLIAGIIVLLVALSLAEMS-RR-FPSAGGFYAYASRGLGPAL 74 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHH-hcccccchhHhHHHHHHHHhhhhhhhhhh-hh-hccccchhhhhhhccCCcC
Confidence 688999999999999999886 6888 788888888 8899999999 98 9999999999999998743
No 29
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.91 E-value=1.4e-09 Score=79.51 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=54.8
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
++.+|.++|+|+|..| .+ +.+||..+++|+++ ..+++|+|++ ++ +|++||.|+|+++..|+.|.
T Consensus 8 ~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~~el~-~~-~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 8 ALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSYAELS-SA-YPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp HHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHHHHHH-TT-TTSSTTHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-cc-CCCcCeeeehhhhcccccch
Confidence 3568899999999988 34 35899999888887 6889999999 88 99999999999999998774
No 30
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.82 E-value=1.8e-09 Score=81.18 Aligned_cols=57 Identities=5% Similarity=-0.072 Sum_probs=50.0
Q ss_pred chhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 11 AGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 11 sGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
+|+|.+.+...+ .+|| +++++|+++ +.+++|+||+ ++ +|++||.|.|++++.++-|+
T Consensus 31 ~g~~~~~~~~~~-~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~-s~-~P~~Gg~y~~~~~~~g~~~g 93 (482)
T TIGR00907 31 TGISTTYNYGLS-SGGAMSIVWGWIIAGAGSICIALSLAELS-SA-YPTSGGQYFWSAKLAPPRQM 93 (482)
T ss_pred HHHHHHHHHhhh-cCCccchhHHHHHHHHHHHHHHHHHHHHH-hh-CCCCccHHHHHHHhcccccc
Confidence 799998887664 6898 678899998 8999999999 98 99999999999999987654
No 31
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.76 E-value=6.3e-09 Score=77.37 Aligned_cols=64 Identities=9% Similarity=-0.062 Sum_probs=52.0
Q ss_pred eEeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++++|.+|| |+|...+...+ .+|| +.+++|++. ..++||+|++ ++ +|++||.|.|+++..|+-+
T Consensus 16 ~l~~~~~ig-g~~~~~~~~~~-~~G~~~~~~~~~i~~~~~~~~a~~~aEl~-s~-~P~~Gg~y~~~~~~~G~~~ 85 (442)
T TIGR00908 16 GIGVGYVIS-GDYAGWNFGLA-QGGWGGFVVATLLVATMYLTFCFSLAELS-TM-IPTAGGGYGFARRAFGPWG 85 (442)
T ss_pred HhHHHHHhh-ccchhHhhHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCCCHHHHHHHHhCcHH
Confidence 456788897 88888776664 5788 456677766 7789999999 98 9999999999999988754
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.70 E-value=1.6e-08 Score=83.76 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=53.7
Q ss_pred ecceecchhhhhhHHHHHhccchH-HHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 5 VDSTLGAGAYILVGTVAREHSGPA-LTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 5 vG~~IGsGIF~~~g~v~~~~aGp~-~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
+++|+|+|||+.++.++. .+|+. .++.|+++ ++++||+|++ ++.+|++||.|.|+++.+|.-+
T Consensus 89 ~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaLS~seia-Tng~p~aGG~Y~yisralGp~~ 157 (953)
T TIGR00930 89 LLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGLSMSAIA-TNGVVKGGGAYYLISRSLGPEF 157 (953)
T ss_pred hHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCccHHHHHHHHHhCcHH
Confidence 789999999999999996 57865 45667776 9999999999 6449999999999999888643
No 33
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.44 E-value=9.9e-08 Score=69.80 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=52.3
Q ss_pred EeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 3 KSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 3 l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
+.++.++|+|+|..++..+. .+ |...++|+++ +.+++|+|++ +. +|++||.|.|+++-.|+.+
T Consensus 23 ~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~~~~el~-~~-~p~~GG~y~~~~~~~g~~~ 90 (466)
T COG0531 23 LGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLALSYAELS-SA-IPSAGGAYAYAKRALGPRL 90 (466)
T ss_pred HHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCeeeehhhhcCcch
Confidence 45788999999999998875 34 5555557776 6689999999 87 9999999999999998754
No 34
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.44 E-value=1.1e-07 Score=68.98 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=55.5
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
++.++.+||+|++..|+.+++ .+|+..+++++++ ..+++|+|+. .+ +|+. +.++|.++..||-+
T Consensus 10 ~l~~~~~iG~gil~~P~~~~~-~a~~~~wi~~ll~~~~~~~~~~~~~~l~-~~-~p~~-~~~~~~~~~~Gk~~ 78 (359)
T TIGR00912 10 FLISSTMIGSGLLTLPALVSQ-SAGQDGWISIILGGLIIIFLLCLMIKIM-SK-FPEK-NFSEILSKYLGKIL 78 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHh-ccCCCeeHHHHHHHHHHHHHHHHHHHHH-HH-CCCC-CHHHHHHHHhhHHH
Confidence 356789999999999998885 6888888888877 7889999999 98 9987 69999999999854
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.42 E-value=1.8e-07 Score=71.10 Aligned_cols=64 Identities=8% Similarity=-0.129 Sum_probs=49.7
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhhhc
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCWRR 71 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~~~ 71 (72)
++++++++|.+- .|.. . +..||+.++.|+++ ..++||+||+ ++ +|+ +||.|.|.++..|+-|.+
T Consensus 16 ~~~~~~vig~~~--~~~~-~-~~~G~~~i~~~~i~~~~~~l~~al~~aEL~-s~-~P~~aGG~Y~w~~~~~G~~~gf 86 (496)
T PRK15238 16 LMIFTSVFGFAN--SPRA-F-YLMGYSAIPWYILSAILFFIPFALMMAEYG-SA-FKDEKGGIYSWMNKSVGPKFAF 86 (496)
T ss_pred HHHHHHHHhCCc--hHHH-H-HHcChHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCcHHHHHHHHcCchHHH
Confidence 356678888653 2322 2 24799998888877 4789999999 88 997 899999999999988753
No 36
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.23 E-value=9.8e-07 Score=66.59 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=40.1
Q ss_pred hccchHHHHHHHHH------HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 23 EHSGPALTLSFPYS------WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 23 ~~aGp~~~la~li~------~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
...||+.+++|+++ ..++||+||+ ++ +|++||.|.|+++..|+-|
T Consensus 26 a~~G~~~~~~~~i~~~~~~ip~al~~aEL~-~~-~P~~GG~y~~~~~a~G~~~ 76 (474)
T TIGR03813 26 AEYGLSAAFYYLFAAIFFLVPVSLVAAELA-TA-WPEKGGVFRWVGEAFGARW 76 (474)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-CCCCCCceeeHhhhcChhH
Confidence 35899999999888 4888999999 88 9999999999999999765
No 37
>PHA02764 hypothetical protein; Provisional
Probab=97.97 E-value=5.6e-06 Score=63.66 Aligned_cols=44 Identities=5% Similarity=-0.028 Sum_probs=38.9
Q ss_pred ccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 24 HSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 24 ~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
..|+..+++|+++ ..++||+|++ ++ +|++||.|.|+++-.|+.+
T Consensus 43 ~pG~nlLLAWLLGGLlALPgAL~YAELG-SA-mPrAGGdYVYISRAFGP~~ 91 (399)
T PHA02764 43 LKNVNLLFAILIGAVFEIPLLLMYYKLT-TK-FPLNGGDYAYIRTAFSSKF 91 (399)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCceEEEhHHhhCccH
Confidence 4677888899988 8899999999 88 9999999999999888743
No 38
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.19 E-value=0.00049 Score=52.11 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=52.0
Q ss_pred eEeecceecchhhhhhHHHHHhccch--HHHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhhc
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGP--ALTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRR 71 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp--~~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~~ 71 (72)
++..|+.||+|+..+|-... .+|. ..++ +|.+. ..++.++|+. .+ .|+.-+..+.+++|.||-|+.
T Consensus 10 ~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~-~~-~~~~~~~~~~a~~~lG~~g~~ 81 (394)
T PF03222_consen 10 LLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSGLLLAEVS-LN-TPEGSSLTSMAEKYLGKKGGI 81 (394)
T ss_pred HHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCCCHHHHHHHHhChHHHH
Confidence 35689999999999997654 3563 2222 34444 8999999999 87 999999999999999999874
No 39
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.14 E-value=0.0003 Score=54.29 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=42.4
Q ss_pred hhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhhccCC-CCCcHHHHHHHHHHHhhh
Q 035132 12 GAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLCRACK-SLAICWECLSLFIHMCWR 70 (72)
Q Consensus 12 GIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~~~~P-~~Gg~~~~~~~~~~~~~~ 70 (72)
+++-.|. .+ ..|++.+.-|+++ ..++|++||+ ++ +| ++||.|.|+++..|+-|.
T Consensus 21 ~~~~~~~-~a--~~G~~~i~~~i~~~l~~~lp~al~~AELa-s~-~p~~~GG~y~wv~~a~G~~~G 81 (507)
T TIGR00910 21 AVYEYPT-FA--TSGFHLVFFLLLGGILWFIPVALCAAEMA-TV-DGWEEGGIFAWVSNTLGERFG 81 (507)
T ss_pred HHHhhHH-HH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCCCeeeehhhccCccHH
Confidence 4555553 22 4688887777776 4799999999 87 97 999999999999998764
No 40
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0023 Score=51.52 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=39.4
Q ss_pred chHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhhc
Q 035132 26 GPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRR 71 (72)
Q Consensus 26 Gp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~~ 71 (72)
+|.++.+|+++ .++++.+|++ +. +|.+||-|.-+.++..+-|+|
T Consensus 82 ~~~~vwgwlIa~~~~i~va~slaEl~-Sa-~PtsGgLy~waa~lap~k~~~ 130 (550)
T KOG1289|consen 82 PPTLVWGWLIAGFFSICVALSLAELC-SA-MPTSGGLYFWAAVLAPPKYGP 130 (550)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHH-hh-CCCCCcHHHHHHHhcCcchhh
Confidence 45777799999 8999999999 97 999999999999999888876
No 41
>PRK09664 tryptophan permease TnaB; Provisional
Probab=96.37 E-value=0.0059 Score=47.32 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=51.8
Q ss_pred eEeecceecchhhhhhHHHHHhccc--hHHHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhhc
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSG--PALTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWRR 71 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aG--p~~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~~ 71 (72)
++..|++||+|++-+|-..+ .+| |+.++ +|++- .+++.+.|.. .. +|+.-+...-+++++||-|+.
T Consensus 16 ~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~LlllEv~-l~-~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 16 MVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGLLLLEAN-LN-YPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred HHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCHHHHHHHHcChHHHH
Confidence 56789999999999996443 355 33333 34444 8889999999 88 999889999999999999874
No 42
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=96.37 E-value=0.0025 Score=48.48 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=43.3
Q ss_pred EeecceecchhhhhhHHHHHhccch-HHHHHHHHH-----HHHHHHHHhHhhccCCC-CCcHHHHHHHHHHHhhhc
Q 035132 3 KSVDSTLGAGAYILVGTVAREHSGP-ALTLSFPYS-----WNSFCFFSLLLCRACKS-LAICWECLSLFIHMCWRR 71 (72)
Q Consensus 3 l~vG~~IGsGIF~~~g~v~~~~aGp-~~~la~li~-----~~al~yaEL~~~~~~P~-~Gg~~~~~~~~~~~~~~~ 71 (72)
...|.+||+|++.+|.... ..|- ..++..+++ ...+.+.|.. .. .|. ..+..++.+++.||-|..
T Consensus 11 ~l~gt~IGaGiL~LP~~ag--~~G~i~~li~~l~~~pl~~~~~~ll~~~~-l~-~~~p~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 11 GLYGTAIGAGVLFLPIQAG--LGGLWVLVLMAIIAYPLTYFGHRALARFL-LS-SKNPCEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCCHHHHHHHHcCHHHHH
Confidence 3468899999999998632 3442 222222222 4455677775 33 454 788999999999998763
No 43
>PRK10483 tryptophan permease; Provisional
Probab=96.31 E-value=0.005 Score=47.67 Aligned_cols=65 Identities=8% Similarity=0.025 Sum_probs=51.1
Q ss_pred eEeecceecchhhhhhHHHHHhccc--hHHHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSG--PALTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aG--p~~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
++..|++||+|++-+|-..+ .+| |+.++ +|++- ..++...|.. .+ +|+.-+...-+++++||-|+
T Consensus 18 ~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~taLlllEv~-l~-~~~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 18 VIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSGLMILEAN-LN-YRIGSSFDTITKDLLGKGWN 88 (414)
T ss_pred HHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-CCCCCCHHHHHHHHcChHHH
Confidence 45679999999999996443 345 34333 34444 8889999999 88 89988999999999999987
No 44
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=96.07 E-value=0.0096 Score=45.66 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=49.0
Q ss_pred eEeecceecchhhhhhHHHHHhccchH--HHH---HHHHH-HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPA--LTL---SFPYS-WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~--~~l---a~li~-~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
++..|+.||+|++.+|=... .+|.. .++ +|.+- ..++.++|.. .. .|+.-+..+-+++++||-|+
T Consensus 10 ~li~GTaIGAGmLaLPi~~~--~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~-~~-~~~~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 10 FIVAGTTIGAGMLAMPLAAA--GVGFSVTLILLIGLWALMCYTALLLLEVY-QH-VPADTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred HHHHhcchhHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CCCCCCHHHHHHHHhChHHH
Confidence 45679999999999997554 36643 222 34422 7778899977 76 78778899999999999886
No 45
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0071 Score=46.13 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=49.7
Q ss_pred EeecceecchhhhhhHHHHHhccch--HHHH---HHHHH-HHHHHHHHhHhhccCCCCC-cHHHHHHHHHHHhhhc
Q 035132 3 KSVDSTLGAGAYILVGTVAREHSGP--ALTL---SFPYS-WNSFCFFSLLLCRACKSLA-ICWECLSLFIHMCWRR 71 (72)
Q Consensus 3 l~vG~~IGsGIF~~~g~v~~~~aGp--~~~l---a~li~-~~al~yaEL~~~~~~P~~G-g~~~~~~~~~~~~~~~ 71 (72)
+..|++||+|+...|=.. ..+|- .+++ +|... ...+++.|.. .. .|+.. +..+-+++|+|+-||.
T Consensus 17 ~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~-~~-~~~~~~~~~~~~~~~~G~~~~~ 88 (415)
T COG0814 17 ILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEAL-LS-SPNGKASITSLVEDYLGKKGGI 88 (415)
T ss_pred HHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-CCCCcccHHHHHHHHhCcchHH
Confidence 457899999999999532 24553 2222 34444 9999999999 87 99884 9999999999999973
No 46
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=94.60 E-value=0.089 Score=41.36 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred eecceecchhhhhhHHHHHhccchHHHH-----HHHHH-HHHHHHHHhHhhccC-CCCCcHHHHHHHHHHHhhhc
Q 035132 4 SVDSTLGAGAYILVGTVAREHSGPALTL-----SFPYS-WNSFCFFSLLLCRAC-KSLAICWECLSLFIHMCWRR 71 (72)
Q Consensus 4 ~vG~~IGsGIF~~~g~v~~~~aGp~~~l-----a~li~-~~al~yaEL~~~~~~-P~~Gg~~~~~~~~~~~~~~~ 71 (72)
..|..||+|++.+|=... ..|....+ +|.+. +..+.++|.. .. . |+..+..+-++++.||-|+.
T Consensus 28 l~GTAIGAGmLfLPI~~g--~~Gf~p~lillll~~p~m~~s~l~L~e~~-L~-~~~~~~~i~~v~~~~lG~~g~~ 98 (443)
T PRK13629 28 LFGTAIGAGVLFFPIRAG--FGGLIPILLMLVLAYPIAFYCHRALARLC-LS-GSNPSGNITETVEEHFGKTGGV 98 (443)
T ss_pred HHHHHHhHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc-cCCCCCCHHHHHHHHcChhHHH
Confidence 468999999999996543 46653222 33333 7789999999 65 6 66677899999999999874
No 47
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.04 E-value=0.24 Score=37.85 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=40.9
Q ss_pred ceecchhhhhhHHHHHhccchHH---HHHHHHHHHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhh
Q 035132 7 STLGAGAYILVGTVAREHSGPAL---TLSFPYSWNSFCFFSLLLCRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 7 ~~IGsGIF~~~g~v~~~~aGp~~---~la~li~~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
--+|+|.++.|..+.+ .+|..+ ++.|+++-+.+-..=+. . .|++||.++++++-+||.+
T Consensus 7 mffGAGNlIfPp~lG~-~aG~~~~~a~lgf~ltgV~lpllgl~--a-v~~~gG~~~~l~~~~g~~f 68 (378)
T TIGR00796 7 LFFGAGNIIFPPMLGL-AAGEHVWTAALGFLLTGVGLPLLGLI--A-LALVGGGYDSLSARIGKVF 68 (378)
T ss_pred HHHhhhHHhhhHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHh--e-eeecCCCHHHHHHHhChHH
Confidence 3479999999999886 577553 44666662222222222 3 8999999999999888754
No 48
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=92.37 E-value=0.2 Score=36.07 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=48.2
Q ss_pred eecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 4 SVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 4 ~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
.+..++|+++...|+..+++ +| ..+++.+++ +.++.+..+. .+ +|+. ...|+.++..||-+.
T Consensus 11 ~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~-~~-~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 11 LISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLL-KR-FPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHH-HH-CCCC-CHHHHHHHHhCcHHH
Confidence 34578899999999999864 56 666666665 7778888899 88 8865 488999998887553
No 49
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=84.25 E-value=1.9 Score=33.76 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=45.2
Q ss_pred eecceecchhhhhhHHHHHhccchHHHH-HHHHH--HHHHHHHHhHhhccCC-------CCCcHHHHHHHHHHHhh
Q 035132 4 SVDSTLGAGAYILVGTVAREHSGPALTL-SFPYS--WNSFCFFSLLLCRACK-------SLAICWECLSLFIHMCW 69 (72)
Q Consensus 4 ~vG~~IGsGIF~~~g~v~~~~aGp~~~l-a~li~--~~al~yaEL~~~~~~P-------~~Gg~~~~~~~~~~~~~ 69 (72)
++++.||+|=-......+ ...||++++ -|+.+ -.+..|+|-.++.-+. ..||...|+++.+++-|
T Consensus 28 ala~~vG~GNI~GVa~AI-~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~ 102 (416)
T PF01235_consen 28 ALAGTVGTGNIAGVATAI-AIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKW 102 (416)
T ss_pred HHHhccCcchHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccch
Confidence 456778888666666555 479997776 56666 4557888876442122 23789999999998776
No 50
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=65.05 E-value=5.3 Score=31.28 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=39.4
Q ss_pred Eeecceecch-hhhhhHHHHHhccchHHHH-HHHHH--HHHHHHHHhHhhccCC---C----CCcHHHHHHHHHHHhh
Q 035132 3 KSVDSTLGAG-AYILVGTVAREHSGPALTL-SFPYS--WNSFCFFSLLLCRACK---S----LAICWECLSLFIHMCW 69 (72)
Q Consensus 3 l~vG~~IGsG-IF~~~g~v~~~~aGp~~~l-a~li~--~~al~yaEL~~~~~~P---~----~Gg~~~~~~~~~~~~~ 69 (72)
..+++.||.| |.-.+.- + +.+||.+++ -|+.+ -.+..|+|..+..-+- + .||...|.++-+++-|
T Consensus 55 ~ala~~VG~GnI~Gva~A-i-~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~ 130 (425)
T TIGR00835 55 TSLAARVGIGNIVGVATA-I-AIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRW 130 (425)
T ss_pred HHHHHHHhhhHHHHHHHH-H-HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccH
Confidence 3567889998 8655553 4 478997754 34444 4455677765332132 1 2455588888777555
No 51
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=54.77 E-value=5.5 Score=28.80 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=35.0
Q ss_pred eecceecchhhhhhHHHHHhccch--HHHHHHHHH----HHHHHHHHhHhhccCC---CCCcHHHHHHHHHHHhhhc
Q 035132 4 SVDSTLGAGAYILVGTVAREHSGP--ALTLSFPYS----WNSFCFFSLLLCRACK---SLAICWECLSLFIHMCWRR 71 (72)
Q Consensus 4 ~vG~~IGsGIF~~~g~v~~~~aGp--~~~la~li~----~~al~yaEL~~~~~~P---~~Gg~~~~~~~~~~~~~~~ 71 (72)
.+++++|+|++..|-... .+|- +.++..+.+ ....-+.|.. .. .| +.-..-+-+++..|+.|++
T Consensus 12 l~~~~iG~G~L~lP~af~--~~G~~~g~i~l~~~~~~s~~t~~~l~~~~-~~-~~~~~~~~~y~~l~~~~~G~~~~~ 84 (409)
T PF01490_consen 12 LINSIIGAGILSLPYAFA--QSGWVLGIILLVLVALLSYYTMYLLVRAA-NA-MPNGTGRRSYGDLARRAFGPKGKW 84 (409)
T ss_pred HHHHHHhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHhhhhhhccc-cc-cccccccccccccccccccccccc
Confidence 357899999999997654 3553 222222222 4444455555 33 33 3333344446666665543
No 52
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=52.37 E-value=10 Score=21.61 Aligned_cols=16 Identities=19% Similarity=0.594 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhcC
Q 035132 57 CWECLSLFIHMCWRRC 72 (72)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (72)
+.+..++...+||.+|
T Consensus 13 ~~~~~~~~t~~Cf~kC 28 (66)
T PF02953_consen 13 FQELFNKLTERCFDKC 28 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455678899999988
No 53
>PTZ00206 amino acid transporter; Provisional
Probab=38.99 E-value=91 Score=24.08 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=32.1
Q ss_pred ecceecchhhhhhHHHHHhccch--HHHHHHHHH-HHHHHHHHhHh-hccCCCCCcHHHHHHHHHHHhh
Q 035132 5 VDSTLGAGAYILVGTVAREHSGP--ALTLSFPYS-WNSFCFFSLLL-CRACKSLAICWECLSLFIHMCW 69 (72)
Q Consensus 5 vG~~IGsGIF~~~g~v~~~~aGp--~~~la~li~-~~al~yaEL~~-~~~~P~~Gg~~~~~~~~~~~~~ 69 (72)
+.++||+||.-.|.-.. .+|- +.++..+++ +..++.-.+.- .. .++.-+.-+-.++..|+-+
T Consensus 70 ~~~~iGaGILsLP~Af~--~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g 135 (467)
T PTZ00206 70 ASSTVGAGIVGLPSAAN--SSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWG 135 (467)
T ss_pred HHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHH
Confidence 45789999999997543 3563 333344444 44444444331 12 2333444444555455543
No 54
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=36.35 E-value=38 Score=27.14 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=42.9
Q ss_pred EeecceecchhhhhhHHHHHhccchHHHH-HHHHH--HHHHHHHHhHhhccCC-------CCCcHHHHHHHHHHHhh
Q 035132 3 KSVDSTLGAGAYILVGTVAREHSGPALTL-SFPYS--WNSFCFFSLLLCRACK-------SLAICWECLSLFIHMCW 69 (72)
Q Consensus 3 l~vG~~IGsGIF~~~g~v~~~~aGp~~~l-a~li~--~~al~yaEL~~~~~~P-------~~Gg~~~~~~~~~~~~~ 69 (72)
.++++-||+|=-..-...+ ...||++++ =|+.+ =.+-.|+|-.+...|. ..||...|++|=+++-|
T Consensus 71 ~sla~~VGtGNIaGVAtAI-~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~ 146 (452)
T COG1115 71 TSLAARVGTGNIAGVATAI-ALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRW 146 (452)
T ss_pred HHHHhccCcchHHHHHHHH-HcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcH
Confidence 3456778888666666555 479997666 57666 3445788866432133 23778888888777655
No 55
>PLN03074 auxin influx permease; Provisional
Probab=35.60 E-value=99 Score=24.16 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=27.1
Q ss_pred cceecchhhhhhHHHHHhccch--HHHHHHHHH--------HHHHHHHHhHhhccCCCCC
Q 035132 6 DSTLGAGAYILVGTVAREHSGP--ALTLSFPYS--------WNSFCFFSLLLCRACKSLA 55 (72)
Q Consensus 6 G~~IGsGIF~~~g~v~~~~aGp--~~~la~li~--------~~al~yaEL~~~~~~P~~G 55 (72)
.+.||.||.-+|-... ..|- ++++-.+++ +..-+|-|.. .+ .|+.+
T Consensus 57 ~~~vG~GILaLP~Af~--~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~-~r-~~~~~ 112 (473)
T PLN03074 57 SNQVAQVLLTLPYSFS--QLGMLSGILFQIFYGLLGSWTAYLISVLYVEYR-AR-KEREK 112 (473)
T ss_pred HHHHhHHHHhHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcCC
Confidence 4568999999997543 3552 333222222 4555677777 66 66644
No 56
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=34.90 E-value=26 Score=23.14 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhcC
Q 035132 57 CWECLSLFIHMCWRRC 72 (72)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (72)
.-+|++.||.+|-+.|
T Consensus 51 p~efl~~yI~~cI~~c 66 (126)
T PF10155_consen 51 PQEFLHMYISNCIKSC 66 (126)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4689999999998877
No 57
>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.18 E-value=40 Score=21.39 Aligned_cols=15 Identities=33% Similarity=1.052 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhcC
Q 035132 58 WECLSLFIHMCWRRC 72 (72)
Q Consensus 58 ~~~~~~~~~~~~~~~ 72 (72)
-+-+..|.+.||..|
T Consensus 28 ~~~VHqft~~CWdKC 42 (86)
T KOG3489|consen 28 QEQVHQFTEICWDKC 42 (86)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667888999887
No 58
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=26.12 E-value=33 Score=24.97 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=13.5
Q ss_pred eEeecceecchhhhhhHHH
Q 035132 2 NKSVDSTLGAGAYILVGTV 20 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v 20 (72)
.++|++|||+|==.+.-..
T Consensus 6 ~IvI~G~IG~GKSTLa~~L 24 (216)
T COG1428 6 VIVIEGMIGAGKSTLAQAL 24 (216)
T ss_pred EEEEecccccCHHHHHHHH
Confidence 6889999999974444333
No 59
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=21.52 E-value=2e+02 Score=24.36 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=23.3
Q ss_pred chHHHHHHHHH--HHHHHHHHhHhhccCCCCCcHHHHHHHHHHH
Q 035132 26 GPALTLSFPYS--WNSFCFFSLLLCRACKSLAICWECLSLFIHM 67 (72)
Q Consensus 26 Gp~~~la~li~--~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~ 67 (72)
||..+..++++ ...+-.|=+ +-.+||.|+=++|||+.
T Consensus 572 G~~al~G~L~G~~vsG~~lAi~-----m~NaGGAWDNAKKyIE~ 610 (666)
T PRK00733 572 GPEALGGLLAGAIVTGLLLAIF-----MANAGGAWDNAKKYIED 610 (666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HcccchhHHHHHHHHhc
Confidence 55555555555 333333222 44699999999999975
Done!