Query 035132
Match_columns 72
No_of_seqs 115 out of 1101
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.3 2.4E-12 8.2E-17 92.3 3.2 65 2-70 17-86 (445)
2 3gia_A Uncharacterized protein 99.3 2.2E-12 7.6E-17 92.6 3.1 64 2-68 15-83 (444)
3 4djk_A Probable glutamate/gamm 98.4 1.6E-07 5.3E-12 68.5 4.5 61 2-70 20-88 (511)
4 1ter_A Tertiapin; toxin; NMR { 89.0 0.072 2.5E-06 25.9 -0.1 7 66-72 12-18 (26)
5 3cjh_B Mitochondrial import in 33.1 17 0.00057 20.1 1.1 15 58-72 11-25 (64)
6 2bsk_B Mitochondrial import in 33.0 17 0.00058 21.5 1.2 16 57-72 18-33 (90)
7 2bsk_A Mitochondrial import in 31.0 21 0.00073 21.1 1.4 16 57-72 17-32 (89)
8 3dxr_B Mitochondrial import in 30.9 21 0.00073 21.6 1.4 16 57-72 31-46 (95)
9 3dxr_A Mitochondrial import in 30.6 22 0.00075 21.1 1.4 16 57-72 26-41 (89)
10 3cqc_B Nuclear pore complex pr 26.7 18 0.00061 24.9 0.6 11 62-72 138-148 (227)
11 3kfo_A Nucleoporin NUP133; nuc 26.5 24 0.00083 25.4 1.3 14 59-72 155-168 (288)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.25 E-value=2.4e-12 Score=92.27 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=57.1
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHhhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
++.+|++||+|+|..|+.+. .+||..+++|+++ +.+++|+|++ ++ +|++||.|+|+++..|+-+.
T Consensus 17 ~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~-~~-~p~~Gg~y~~~~~~~G~~~g 86 (445)
T 3l1l_A 17 LMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMS-FL-DPSPGGSYAYARRCFGPFLG 86 (445)
T ss_dssp HHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCTTTHHHHHHHHSCHHHH
T ss_pred HHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHH-cc-CCCCCCchhhHHhHcCChHH
Confidence 35689999999999999854 3799988999888 8889999999 98 99999999999999887653
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.25 E-value=2.2e-12 Score=92.61 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=57.9
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH-----HHHHHHHHhHhhccCCCCCcHHHHHHHHHHHh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS-----WNSFCFFSLLLCRACKSLAICWECLSLFIHMC 68 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~-----~~al~yaEL~~~~~~P~~Gg~~~~~~~~~~~~ 68 (72)
++++|.+||+|+|..++..++ .+||..+++|+++ +.+++|+|++ ++ +|++||.|+|+++..|+-
T Consensus 15 ~l~~g~~iG~gi~~~~~~~~~-~~G~~~~~~~li~~~~~~~~~~~~~el~-~~-~P~~Gg~y~~~~~~~G~~ 83 (444)
T 3gia_A 15 SMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYTKLG-AK-IVSNAGPIAFIHKAIGDN 83 (444)
T ss_dssp HHHHHHHHHHHTTTSHHHHHH-HHGGGHHHHHHHHHHHHHHHHHHHHHHH-TT-CCCTTTHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHH-hh-CCCCCcHHHhHHHHhCcc
Confidence 357889999999999998774 6899999999988 8889999999 98 999999999999999874
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.45 E-value=1.6e-07 Score=68.45 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=46.6
Q ss_pred eEeecceecchhhhhhHHHHHhccchHHHHHHHHH------HHHHHHHHhHhh--ccCCCCCcHHHHHHHHHHHhhh
Q 035132 2 NKSVDSTLGAGAYILVGTVAREHSGPALTLSFPYS------WNSFCFFSLLLC--RACKSLAICWECLSLFIHMCWR 70 (72)
Q Consensus 2 ~l~vG~~IGsGIF~~~g~v~~~~aGp~~~la~li~------~~al~yaEL~~~--~~~P~~Gg~~~~~~~~~~~~~~ 70 (72)
+++++.++| ++..++ . ..+||..++.++++ ..+++|+|++ + + +| +||.|.|+++..|+-|.
T Consensus 20 ~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~-s~~~-~P-~GG~y~~~~~~~g~~~g 88 (511)
T 4djk_A 20 AITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMA-TVDG-WE-EGGVFAWVSNTLGPRWG 88 (511)
T ss_dssp HHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHH-TTSC-C----CHHHHHHHHHCHHHH
T ss_pred HHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccc-CC-CCChhhhHHhhcCchHH
Confidence 356788885 666665 2 35899988888777 3799999999 8 8 99 99999999999998764
No 4
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=89.01 E-value=0.072 Score=25.93 Aligned_cols=7 Identities=71% Similarity=2.513 Sum_probs=6.3
Q ss_pred HHhhhcC
Q 035132 66 HMCWRRC 72 (72)
Q Consensus 66 ~~~~~~~ 72 (72)
||||++|
T Consensus 12 hmcwkkc 18 (26)
T 1ter_A 12 HMCWKKC 18 (26)
T ss_dssp HHHHHHH
T ss_pred hHHHHHh
Confidence 8999987
No 5
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=33.14 E-value=17 Score=20.15 Aligned_cols=15 Identities=20% Similarity=0.855 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhcC
Q 035132 58 WECLSLFIHMCWRRC 72 (72)
Q Consensus 58 ~~~~~~~~~~~~~~~ 72 (72)
-+-.++...+||.+|
T Consensus 11 ~~~~~~lt~~Cf~kC 25 (64)
T 3cjh_B 11 QMSIHQFTNICFKKC 25 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678888999987
No 6
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=33.01 E-value=17 Score=21.52 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhcC
Q 035132 57 CWECLSLFIHMCWRRC 72 (72)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (72)
+-+-.+++..+||++|
T Consensus 18 ~~~l~n~lte~Cf~KC 33 (90)
T 2bsk_B 18 MADMYNRMTSACHRKC 33 (90)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456788899999988
No 7
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=31.03 E-value=21 Score=21.14 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhcC
Q 035132 57 CWECLSLFIHMCWRRC 72 (72)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (72)
+-+..++...+||.+|
T Consensus 17 ~~~l~n~lte~Cf~KC 32 (89)
T 2bsk_A 17 FLGTYNKLTETCFLDC 32 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455677889999988
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=30.91 E-value=21 Score=21.61 Aligned_cols=16 Identities=13% Similarity=0.744 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhcC
Q 035132 57 CWECLSLFIHMCWRRC 72 (72)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (72)
+-+-.++...+||++|
T Consensus 31 ~~~l~nklte~Cf~KC 46 (95)
T 3dxr_B 31 VTDMFNKLVNNCYKKC 46 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566788899999988
No 9
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=30.63 E-value=22 Score=21.05 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhcC
Q 035132 57 CWECLSLFIHMCWRRC 72 (72)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (72)
+.+-.++...+||.+|
T Consensus 26 ~~~l~~~lte~Cf~kC 41 (89)
T 3dxr_A 26 FMRLYSNLVERCFTDC 41 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455778888999887
No 10
>3cqc_B Nuclear pore complex protein NUP133; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3cqg_B
Probab=26.69 E-value=18 Score=24.90 Aligned_cols=11 Identities=0% Similarity=-0.236 Sum_probs=8.6
Q ss_pred HHHHHHhhhcC
Q 035132 62 SLFIHMCWRRC 72 (72)
Q Consensus 62 ~~~~~~~~~~~ 72 (72)
+.+-.++||||
T Consensus 138 ~~L~~~IWrRa 148 (227)
T 3cqc_B 138 NDLKLEILCKA 148 (227)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45568999998
No 11
>3kfo_A Nucleoporin NUP133; nuclear pore complex, yeast, proteolysis, structural genomics, PSI2, protein structure initiative; HET: MSE; 1.90A {Saccharomyces cerevisiae}
Probab=26.48 E-value=24 Score=25.37 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhcC
Q 035132 59 ECLSLFIHMCWRRC 72 (72)
Q Consensus 59 ~~~~~~~~~~~~~~ 72 (72)
++.+.+..+-||||
T Consensus 155 e~~~~l~~lIWRRc 168 (288)
T 3kfo_A 155 EVKKFLNALVWRRI 168 (288)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34466778999998
Done!