BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035136
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
(Ppm1a) Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 77.8 bits (190), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS---STSFFGVYD 57
MG +L PK EK + GQ +RYGLSSMQGWR MEDAH A L S S SFF VYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGG 61
GH G
Sbjct: 61 GHAG 64
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS---STSFFGVYD 57
MG +L PK EK + GQ +RYGLSSMQGWR MEDAH A L S S SFF VYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGG 61
GH G
Sbjct: 61 GHAG 64
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR
PHOSPHATASE COMPLEXED With Zn2+
Length = 304
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 38/61 (62%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHG 60
+G YLS P T K S D NE + G SSMQGWR + EDAH + D SFF VYDGHG
Sbjct: 2 LGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDDQCSFFAVYDGHG 61
Query: 61 G 61
G
Sbjct: 62 G 62
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAA---YPDLDSSTSFFGVYD 57
+G +L PKTEK + G +RYGLSSMQGWR MEDAH A P SFF VYD
Sbjct: 3 LGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYD 62
Query: 58 GHGG 61
GH G
Sbjct: 63 GHAG 66
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 15/53 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYP---------------DLDSSTSFFGVYDGHGG 61
YG +S+ G R MEDA + P D S+ FFGVYDGHGG
Sbjct: 14 YGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGG 66
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 15/53 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYP---------------DLDSSTSFFGVYDGHGG 61
YG +S+ G R MEDA + P D S+ FFGVYDGHGG
Sbjct: 26 YGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGG 78
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 15/53 (28%)
Query: 24 YGLSSMQGWRATMEDAHAAYP---------------DLDSSTSFFGVYDGHGG 61
YG +S+ G R MEDA + P D S+ FFGVYDGHGG
Sbjct: 11 YGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGG 63
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGG 61
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 5 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 62
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGG 61
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 29 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 86
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGG 61
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 22 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 79
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With
The Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGG 61
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 16 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 73
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGG 61
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 20 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 77
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
Length = 340
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 20/58 (34%)
Query: 24 YGLSSMQGWRATMEDAHAAYPDL--------------------DSSTSFFGVYDGHGG 61
+G S+QG R+ MEDA A P + FFGVYDGHGG
Sbjct: 19 WGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGG 76
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 19/57 (33%)
Query: 24 YGLSSMQGWRATMEDAHAAYPD---------LDS----------STSFFGVYDGHGG 61
YG++S+ G R MED+ + P LD S FFGVYDGHGG
Sbjct: 14 YGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGG 70
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 16 DGQNENVRYGLSSMQ-GWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVISE 70
DG+N + G S Q A +ED +A L + GV+DGH G +SE
Sbjct: 31 DGKNVSSVLGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSE 86
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 20 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGG 61
ENV G +S G R ED + L +F VYDGHGG
Sbjct: 8 ENV--GCASQIGKRKENED-RFDFAQLTDEVLYFAVYDGHGG 46
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 20 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGG 61
ENV G +S G R ED + L +F VYDGHGG
Sbjct: 122 ENV--GCASQIGKRKENED-RFDFAQLTDEVLYFAVYDGHGG 160
>pdb|3BS6|A Chain A, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
pdb|3BS6|B Chain B, 1.8 Angstrom Crystal Structure Of The Periplasmic Domain
Of The Membrane Insertase Yidc
Length = 280
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 GVYLSTP--KTEKFSEDGQNENVRYGLSSMQGWRATMED--AHAAYPDLDSSTSFFGVYD 57
G STP K EK+ D +N +SS GW A ++ A A P D + +F+
Sbjct: 165 GAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAXLQQYFATAWIPHNDGTNNFYTANL 224
Query: 58 GHG 60
G+G
Sbjct: 225 GNG 227
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase
1 (Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase
1 (Pdp1)
Length = 467
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 16 DGQNENVRYGLSSMQ-GWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVISE 70
DG+N + G S + A +ED +A L + GV+DGH G +SE
Sbjct: 31 DGKNVSSILGFDSNRLPANAPIEDRRSATTCLQTRGMLLGVFDGHAGCACSQAVSE 86
>pdb|1RZ2|A Chain A, 1.6a Crystal Structure Of The Protein Ba4783Q81L49
(SIMILAR TO Sortase B) From Bacillus Anthracis
Length = 254
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 2 GVYLSTPKTEKFSEDGQNENVRYGLSSMQ-------GWRATMEDAHAAYPDLDSSTSFFG 54
+Y +P E+ S+DG+ VR ++Q GW TM+D YP + + + +
Sbjct: 51 NIYEKSPMEEQ-SQDGE---VRKQFKALQQINQEIVGW-ITMDDTQINYPIVQAKDNDYY 105
Query: 55 VYDGHGGKYMRS 66
++ + G+ MR+
Sbjct: 106 LFRNYKGEDMRA 117
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From
Synechocystis Sp. Pcc 6803
Length = 473
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 11 EKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSST 50
++ E+ E + + SS++GW+A E PD +++T
Sbjct: 39 DQLDENSFTEGIPFDGSSIRGWKAINESDMCMVPDPNTAT 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,375,588
Number of Sequences: 62578
Number of extensions: 77726
Number of successful extensions: 152
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 21
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)