Query 035136
Match_columns 72
No_of_seqs 149 out of 1010
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:29:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 99.9 3.1E-24 6.6E-29 151.1 5.0 71 1-71 1-74 (379)
2 KOG0699 Serine/threonine prote 99.9 7.4E-24 1.6E-28 153.4 3.9 71 1-71 1-71 (542)
3 PTZ00224 protein phosphatase 2 99.8 2E-18 4.3E-23 124.7 6.9 69 1-71 1-69 (381)
4 KOG0698 Serine/threonine prote 99.5 8.4E-14 1.8E-18 98.5 5.9 49 23-71 41-96 (330)
5 PLN03145 Protein phosphatase 2 99.4 1.9E-13 4E-18 98.4 5.9 53 19-71 62-124 (365)
6 PF00481 PP2C: Protein phospha 99.4 1.5E-13 3.3E-18 93.0 2.0 49 23-71 1-54 (254)
7 smart00332 PP2Cc Serine/threon 98.8 1.8E-08 3.8E-13 66.8 6.3 51 20-70 4-54 (255)
8 KOG0700 Protein phosphatase 2C 98.8 4.4E-09 9.5E-14 76.6 3.4 36 36-71 85-120 (390)
9 cd00143 PP2Cc Serine/threonine 98.7 3.5E-08 7.6E-13 65.0 5.3 48 23-70 2-50 (254)
10 COG0631 PTC1 Serine/threonine 98.7 3E-08 6.6E-13 68.4 4.4 49 23-71 10-59 (262)
11 PRK14559 putative protein seri 98.4 4E-07 8.6E-12 70.0 4.7 48 21-68 374-432 (645)
12 PF13672 PP2C_2: Protein phosp 95.2 0.015 3.3E-07 37.8 2.3 38 28-67 4-41 (212)
13 KOG1323 Serine/threonine phosp 92.9 0.089 1.9E-06 39.0 2.5 21 49-69 143-163 (493)
14 smart00331 PP2C_SIG Sigma fact 89.4 0.65 1.4E-05 29.6 3.7 33 36-69 17-49 (193)
15 KOG0618 Serine/threonine phosp 58.6 9.4 0.0002 31.8 2.6 49 21-69 521-570 (1081)
16 PF14808 TMEM164: TMEM164 fami 56.8 5.8 0.00013 27.8 1.0 20 50-69 4-26 (252)
17 COG0852 NuoC NADH:ubiquinone o 51.9 8.3 0.00018 25.6 1.1 12 49-60 115-127 (176)
18 KOG1379 Serine/threonine prote 42.1 22 0.00048 26.0 2.1 25 35-61 90-114 (330)
19 KOG4530 Predicted flavoprotein 32.6 31 0.00066 23.3 1.5 22 49-70 119-140 (199)
20 PF00733 Asn_synthase: Asparag 30.8 26 0.00057 22.6 1.0 12 54-65 123-134 (255)
21 smart00207 TNF Tumour necrosis 28.8 42 0.00092 20.3 1.6 25 32-56 93-123 (125)
22 cd02039 cytidylyltransferase_l 28.2 38 0.00082 20.0 1.3 13 51-63 3-16 (143)
23 cd00184 TNF Tumor Necrosis Fac 28.1 41 0.00089 20.7 1.5 25 32-56 107-137 (137)
24 KOG4398 Predicted coiled-coil 24.3 29 0.00064 25.3 0.3 10 55-64 136-145 (359)
25 PF01693 Cauli_VI: Caulimoviru 23.9 60 0.0013 16.3 1.4 9 52-60 2-10 (44)
26 PF13825 Paramyxo_PNT: Paramyx 23.4 63 0.0014 23.5 1.9 15 49-64 103-117 (309)
27 PF13292 DXP_synthase_N: 1-deo 23.0 1E+02 0.0022 22.0 2.8 21 49-69 235-255 (270)
28 PF11884 DUF3404: Domain of un 21.6 59 0.0013 23.1 1.4 13 60-72 114-126 (262)
29 COG3130 Rmf Ribosome modulatio 20.2 25 0.00053 19.1 -0.6 13 29-41 41-53 (55)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-24 Score=151.07 Aligned_cols=71 Identities=51% Similarity=0.897 Sum_probs=67.8
Q ss_pred CCCCCCCcceeeeeecCCCCceEEEEEcccccccccccceeEeccCCC---CeeEEEEecCCCcHHHHHHHhhc
Q 035136 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDS---STSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 1 mg~~L~~p~~~k~~~~~~~~~~~~g~~s~~G~R~~mED~~~~~~~~~~---~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
||.||.+|.++|....++++.++||++||||||..|||.|+....++. +|+||+|||||.|..+|+||++|
T Consensus 1 MGaFLdKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~h 74 (379)
T KOG0697|consen 1 MGAFLDKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEH 74 (379)
T ss_pred CCccccCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877753 99999999999999999999986
No 2
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=7.4e-24 Score=153.37 Aligned_cols=71 Identities=54% Similarity=0.873 Sum_probs=68.4
Q ss_pred CCCCCCCcceeeeeecCCCCceEEEEEcccccccccccceeEeccCCCCeeEEEEecCCCcHHHHHHHhhc
Q 035136 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 1 mg~~L~~p~~~k~~~~~~~~~~~~g~~s~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
||.||++|+++|.+..+.+..+.||.++|||||.+|||.|-++.+|+.++++|||||||||.++|+||+.+
T Consensus 1 MGAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa~yca~k 71 (542)
T KOG0699|consen 1 MGAYLSKPITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVAKYCAAK 71 (542)
T ss_pred CcccccCCccccccccccCccchhchhhhhccccchhhhhcccccccCcceEEEEecCCCcHHHHHHHHHh
Confidence 99999999999999988888899999999999999999999999999999999999999999999999864
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.75 E-value=2e-18 Score=124.69 Aligned_cols=69 Identities=32% Similarity=0.565 Sum_probs=63.0
Q ss_pred CCCCCCCcceeeeeecCCCCceEEEEEcccccccccccceeEeccCCCCeeEEEEecCCCcHHHHHHHhhc
Q 035136 1 MGVYLSTPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 1 mg~~L~~p~~~k~~~~~~~~~~~~g~~s~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
||..|++|+.++.++..++..+.+|.++++|+|++|||++++.. ..+..||||||||+|.+||+|++++
T Consensus 1 mg~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~--~~~~~lfgVfDGHgG~~~S~~~~~~ 69 (381)
T PTZ00224 1 MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYL--TDDWGFFGVFDGHVNDECSQYLARA 69 (381)
T ss_pred CCccCCCCccccccccCCCccEEEEEEeCCCCCCCCCCeeEecc--CCCceEEEEEeCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998754 2356799999999999999999864
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.47 E-value=8.4e-14 Score=98.51 Aligned_cols=49 Identities=41% Similarity=0.710 Sum_probs=42.4
Q ss_pred EEEEEcccccccccccceeEeccCC------C-CeeEEEEecCCCcHHHHHHHhhc
Q 035136 23 RYGLSSMQGWRATMEDAHAAYPDLD------S-STSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 23 ~~g~~s~~G~R~~mED~~~~~~~~~------~-~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
..+.++++|+|+.|||++....++. . ..+||||||||||..||+||++|
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~ 96 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKH 96 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 3555699999999999999988754 1 58999999999999999999975
No 5
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.44 E-value=1.9e-13 Score=98.41 Aligned_cols=53 Identities=32% Similarity=0.486 Sum_probs=45.1
Q ss_pred CCceEEEEEcccccccccccceeEeccCC----------CCeeEEEEecCCCcHHHHHHHhhc
Q 035136 19 NENVRYGLSSMQGWRATMEDAHAAYPDLD----------SSTSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 19 ~~~~~~g~~s~~G~R~~mED~~~~~~~~~----------~~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
.+.++++..+.+|.|++|||+|++..++. .+..||||||||||..+++|++++
T Consensus 62 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~ 124 (365)
T PLN03145 62 IPVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYH 124 (365)
T ss_pred cCceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHH
Confidence 35579999999999999999998866542 246899999999999999999874
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.38 E-value=1.5e-13 Score=92.97 Aligned_cols=49 Identities=45% Similarity=0.751 Sum_probs=44.3
Q ss_pred EEEEEcccccccccccceeEeccCC-----CCeeEEEEecCCCcHHHHHHHhhc
Q 035136 23 RYGLSSMQGWRATMEDAHAAYPDLD-----SSTSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 23 ~~g~~s~~G~R~~mED~~~~~~~~~-----~~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
.+|+++++|+|.+|||++++..++. .+..+|||||||||..+|+|++++
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~ 54 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQN 54 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHH
Confidence 4799999999999999999988663 388999999999999999999864
No 7
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.80 E-value=1.8e-08 Score=66.82 Aligned_cols=51 Identities=57% Similarity=0.929 Sum_probs=44.2
Q ss_pred CceEEEEEcccccccccccceeEeccCCCCeeEEEEecCCCcHHHHHHHhh
Q 035136 20 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVISE 70 (72)
Q Consensus 20 ~~~~~g~~s~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~ 70 (72)
..+.++.++.+|.|..+||++.+..+...+..+|+|+|||||..+|+++++
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~ 54 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSK 54 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHH
Confidence 346778889999999999999987655568899999999999999999875
No 8
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=98.79 E-value=4.4e-09 Score=76.61 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=31.8
Q ss_pred cccceeEeccCCCCeeEEEEecCCCcHHHHHHHhhc
Q 035136 36 MEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 36 mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
-||+..+.......+.||||||||||++|++|+++|
T Consensus 85 ~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~ 120 (390)
T KOG0700|consen 85 EEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDH 120 (390)
T ss_pred ccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHH
Confidence 577777777777899999999999999999999986
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=98.70 E-value=3.5e-08 Score=64.97 Aligned_cols=48 Identities=40% Similarity=0.614 Sum_probs=40.3
Q ss_pred EEEEEcccccccccccceeEeccCC-CCeeEEEEecCCCcHHHHHHHhh
Q 035136 23 RYGLSSMQGWRATMEDAHAAYPDLD-SSTSFFGVYDGHGGKYMRSVISE 70 (72)
Q Consensus 23 ~~g~~s~~G~R~~mED~~~~~~~~~-~~~~~fgVfDGHgG~~~a~~~~~ 70 (72)
.++.++.+|+|+.+||++.+..... .+..+|+|+|||||...++++++
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~ 50 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASK 50 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHH
Confidence 4678899999999999999865432 36799999999999998888875
No 10
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=98.67 E-value=3e-08 Score=68.37 Aligned_cols=49 Identities=33% Similarity=0.411 Sum_probs=38.7
Q ss_pred EEEEEcccccccccccceeEeccCCCC-eeEEEEecCCCcHHHHHHHhhc
Q 035136 23 RYGLSSMQGWRATMEDAHAAYPDLDSS-TSFFGVYDGHGGKYMRSVISEF 71 (72)
Q Consensus 23 ~~g~~s~~G~R~~mED~~~~~~~~~~~-~~~fgVfDGHgG~~~a~~~~~~ 71 (72)
.++.+...++|..|||.+.+..+-... ..||+|||||||..+++++++.
T Consensus 10 ~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~ 59 (262)
T COG0631 10 VAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKL 59 (262)
T ss_pred eeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHH
Confidence 455566667899999999997633221 5799999999999999999863
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=98.40 E-value=4e-07 Score=69.99 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=35.9
Q ss_pred ceEEEEEccccc-ccccccceeEeccC-----C-----CCeeEEEEecCCCcHHHHHHH
Q 035136 21 NVRYGLSSMQGW-RATMEDAHAAYPDL-----D-----SSTSFFGVYDGHGGKYMRSVI 68 (72)
Q Consensus 21 ~~~~g~~s~~G~-R~~mED~~~~~~~~-----~-----~~~~~fgVfDGHgG~~~a~~~ 68 (72)
.+.++..+.+|. |..|||++.+..++ + ....+|+|+|||||..+.+.+
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevA 432 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVA 432 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHH
Confidence 477888999996 99999998775432 1 135799999999987654433
No 12
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=95.23 E-value=0.015 Score=37.77 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=24.3
Q ss_pred cccccccccccceeEeccCCCCeeEEEEecCCCcHHHHHH
Q 035136 28 SMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSV 67 (72)
Q Consensus 28 s~~G~R~~mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~ 67 (72)
+-+|.|..+||++.+... .+..+++|.||.|+...++.
T Consensus 4 sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~ 41 (212)
T PF13672_consen 4 SHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEE 41 (212)
T ss_dssp ---TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHH
T ss_pred cccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHH
Confidence 457788999999995442 45567799999997765444
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=92.91 E-value=0.089 Score=39.00 Aligned_cols=21 Identities=33% Similarity=0.697 Sum_probs=18.1
Q ss_pred CeeEEEEecCCCcHHHHHHHh
Q 035136 49 STSFFGVYDGHGGKYMRSVIS 69 (72)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~ 69 (72)
+-++|.+||||.|+.+|--++
T Consensus 143 ~~~~~slfdghags~~avvAs 163 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVAS 163 (493)
T ss_pred cceeeeeecCCCcchHHHHHH
Confidence 679999999999999886654
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=89.40 E-value=0.65 Score=29.58 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=20.9
Q ss_pred cccceeEeccCCCCeeEEEEecCCCcHHHHHHHh
Q 035136 36 MEDAHAAYPDLDSSTSFFGVYDGHGGKYMRSVIS 69 (72)
Q Consensus 36 mED~~~~~~~~~~~~~~fgVfDGHgG~~~a~~~~ 69 (72)
-.|.|-+.. .+....+|+|+||||+-..|.+++
T Consensus 17 ~GD~~~~~~-~~~~~~~~~v~Dg~G~G~~aa~~s 49 (193)
T smart00331 17 GGDFYDVVK-LPEGRLLIAIADVMGKGLAAALAM 49 (193)
T ss_pred CccEEEEEE-eCCCeEEEEEEecCCCChHHHHHH
Confidence 456665533 234578999999999554444443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=58.60 E-value=9.4 Score=31.78 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=37.0
Q ss_pred ceEEEEEcccccccccccceeEeccC-CCCeeEEEEecCCCcHHHHHHHh
Q 035136 21 NVRYGLSSMQGWRATMEDAHAAYPDL-DSSTSFFGVYDGHGGKYMRSVIS 69 (72)
Q Consensus 21 ~~~~g~~s~~G~R~~mED~~~~~~~~-~~~~~~fgVfDGHgG~~~a~~~~ 69 (72)
-+.+|++.+.|.|...--+-....+| ....+.||+|||-+..++..+++
T Consensus 521 ~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq 570 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQ 570 (1081)
T ss_pred heeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHH
Confidence 36799999999998765555545554 34779999999999887766654
No 16
>PF14808 TMEM164: TMEM164 family
Probab=56.80 E-value=5.8 Score=27.84 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=15.4
Q ss_pred eeEEEE---ecCCCcHHHHHHHh
Q 035136 50 TSFFGV---YDGHGGKYMRSVIS 69 (72)
Q Consensus 50 ~~~fgV---fDGHgG~~~a~~~~ 69 (72)
+++=|| +.|.||++||+|++
T Consensus 4 w~ygGv~~s~~gngGpeC~~fLs 26 (252)
T PF14808_consen 4 WAYGGVNPSIPGNGGPECANFLS 26 (252)
T ss_pred eEEccccCcCCCCCChhhhHhCC
Confidence 344455 57999999999986
No 17
>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion]
Probab=51.92 E-value=8.3 Score=25.62 Aligned_cols=12 Identities=33% Similarity=1.021 Sum_probs=10.2
Q ss_pred CeeEEEE-ecCCC
Q 035136 49 STSFFGV-YDGHG 60 (72)
Q Consensus 49 ~~~~fgV-fDGHg 60 (72)
-+-+||| ||||=
T Consensus 115 ~yDmfGI~FeGHP 127 (176)
T COG0852 115 AYDMFGIVFEGHP 127 (176)
T ss_pred hheeeeeEEcCCc
Confidence 6789998 89994
No 18
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=42.10 E-value=22 Score=26.04 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=19.0
Q ss_pred ccccceeEeccCCCCeeEEEEecCCCc
Q 035136 35 TMEDAHAAYPDLDSSTSFFGVYDGHGG 61 (72)
Q Consensus 35 ~mED~~~~~~~~~~~~~~fgVfDGHgG 61 (72)
.=||.|.+-.+ ....+.||.||=||
T Consensus 90 ~GEDa~Fvss~--~~~~v~GVADGVGG 114 (330)
T KOG1379|consen 90 GGEDAWFVSSN--PHAIVMGVADGVGG 114 (330)
T ss_pred CCCcceeeccC--cccceEEEccccch
Confidence 35788887553 36689999999985
No 19
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=32.56 E-value=31 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=17.3
Q ss_pred CeeEEEEecCCCcHHHHHHHhh
Q 035136 49 STSFFGVYDGHGGKYMRSVISE 70 (72)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~~ 70 (72)
.-++.--|-||||..|+..+++
T Consensus 119 KPalivSyGGhGGg~c~~qL~~ 140 (199)
T KOG4530|consen 119 KPALIVSYGGHGGGRCQYQLRQ 140 (199)
T ss_pred CceEEEEecCCCCchHHHHHHH
Confidence 4466667899999999988764
No 20
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=30.79 E-value=26 Score=22.64 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=7.6
Q ss_pred EEecCCCcHHHH
Q 035136 54 GVYDGHGGKYMR 65 (72)
Q Consensus 54 gVfDGHgG~~~a 65 (72)
-|++||||+++-
T Consensus 123 ~~ltG~GgDelf 134 (255)
T PF00733_consen 123 VLLTGQGGDELF 134 (255)
T ss_dssp EEE--TTHHHHH
T ss_pred EEEecccccccc
Confidence 378999999764
No 21
>smart00207 TNF Tumour necrosis factor family. Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.
Probab=28.82 E-value=42 Score=20.35 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=16.5
Q ss_pred cccccccceeEec------cCCCCeeEEEEe
Q 035136 32 WRATMEDAHAAYP------DLDSSTSFFGVY 56 (72)
Q Consensus 32 ~R~~mED~~~~~~------~~~~~~~~fgVf 56 (72)
.+....|+..+.. ++.....|||+|
T Consensus 93 f~L~~gD~L~v~v~~~~~v~~~~~~TfFG~f 123 (125)
T smart00207 93 FPLTAGDRLSVNVTEPSLVDLAPGATFFGAF 123 (125)
T ss_pred EEecCCCEEEEEeCCCceEecCCCcEEEEEE
Confidence 4566677777643 233478999998
No 22
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=28.17 E-value=38 Score=19.99 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=10.6
Q ss_pred eEEEEecC-CCcHH
Q 035136 51 SFFGVYDG-HGGKY 63 (72)
Q Consensus 51 ~~fgVfDG-HgG~~ 63 (72)
.+.|-||+ |.|..
T Consensus 3 ~~~G~Fdp~H~GH~ 16 (143)
T cd02039 3 IIIGRFEPFHLGHL 16 (143)
T ss_pred EEeeccCCcCHHHH
Confidence 57799999 99873
No 23
>cd00184 TNF Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.
Probab=28.08 E-value=41 Score=20.67 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=17.0
Q ss_pred cccccccceeEec------cCCCCeeEEEEe
Q 035136 32 WRATMEDAHAAYP------DLDSSTSFFGVY 56 (72)
Q Consensus 32 ~R~~mED~~~~~~------~~~~~~~~fgVf 56 (72)
.+..-.|+..+.. ++.....|||+|
T Consensus 107 f~L~~gd~l~v~v~~~~~v~~~~~~TfFG~f 137 (137)
T cd00184 107 FQLRAGDRLSVNVSAPALLDLSQGTTFFGAF 137 (137)
T ss_pred EEecCCCEEEEEeCCcceEecCCCcEEEEeC
Confidence 4556677777644 234588999997
No 24
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.32 E-value=29 Score=25.27 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=8.3
Q ss_pred EecCCCcHHH
Q 035136 55 VYDGHGGKYM 64 (72)
Q Consensus 55 VfDGHgG~~~ 64 (72)
|||||+++++
T Consensus 136 v~~~~~~~~i 145 (359)
T KOG4398|consen 136 VCDDHMSDKI 145 (359)
T ss_pred EEcCCCCcce
Confidence 8999998654
No 25
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=23.87 E-value=60 Score=16.26 Aligned_cols=9 Identities=22% Similarity=1.021 Sum_probs=6.8
Q ss_pred EEEEecCCC
Q 035136 52 FFGVYDGHG 60 (72)
Q Consensus 52 ~fgVfDGHg 60 (72)
|++|++|+.
T Consensus 2 ~YaV~~G~~ 10 (44)
T PF01693_consen 2 YYAVFNGRQ 10 (44)
T ss_dssp EEEEECSSS
T ss_pred EEEEEeCCC
Confidence 678888875
No 26
>PF13825 Paramyxo_PNT: Paramyxovirus structural protein V/P N-terminus
Probab=23.36 E-value=63 Score=23.51 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=12.5
Q ss_pred CeeEEEEecCCCcHHH
Q 035136 49 STSFFGVYDGHGGKYM 64 (72)
Q Consensus 49 ~~~~fgVfDGHgG~~~ 64 (72)
.+-.|-||| |+|.++
T Consensus 103 ~v~~Y~Vyd-H~ge~V 117 (309)
T PF13825_consen 103 GVQCYHVYD-HSGEAV 117 (309)
T ss_pred CcceEEEec-CCcccc
Confidence 778899999 998754
No 27
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=23.02 E-value=1e+02 Score=22.04 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.8
Q ss_pred CeeEEEEecCCCcHHHHHHHh
Q 035136 49 STSFFGVYDGHGGKYMRSVIS 69 (72)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~ 69 (72)
.+.|+|.+|||.=.+..+.++
T Consensus 235 G~~Y~GPiDGHdl~~Li~~l~ 255 (270)
T PF13292_consen 235 GFDYIGPIDGHDLEELIEVLE 255 (270)
T ss_dssp T-EEEEEEETT-HHHHHHHHH
T ss_pred CCeEEeccCCCCHHHHHHHHH
Confidence 789999999998666655543
No 28
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=21.59 E-value=59 Score=23.06 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=11.7
Q ss_pred CcHHHHHHHhhcC
Q 035136 60 GGKYMRSVISEFS 72 (72)
Q Consensus 60 gG~~~a~~~~~~~ 72 (72)
||+.|+.|+++||
T Consensus 114 GGSYA~RYl~~~p 126 (262)
T PF11884_consen 114 GGSYADRYLEKHP 126 (262)
T ss_pred CCcHHHHHHHHCC
Confidence 6999999999886
No 29
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=20.23 E-value=25 Score=19.14 Aligned_cols=13 Identities=38% Similarity=0.882 Sum_probs=10.6
Q ss_pred cccccccccccee
Q 035136 29 MQGWRATMEDAHA 41 (72)
Q Consensus 29 ~~G~R~~mED~~~ 41 (72)
.-|||.-|+|+.+
T Consensus 41 LgGWRea~~D~~~ 53 (55)
T COG3130 41 LGGWREAMADRVV 53 (55)
T ss_pred HHHHHHHhhhccc
Confidence 4689999999864
Done!