BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035138
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ASY8|TOM71_ARATH Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis
          thaliana GN=TOM7-1 PE=1 SV=1
          Length = 75

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 45/52 (86%)

Query: 21 EEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 72
          ++KS  D  KEW+ W++KKAKVVTHYGFIPL+I +GMNSDPKP ++QLLSPV
Sbjct: 24 DDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75


>sp|Q3ECI7|TOM72_ARATH Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis
          thaliana GN=TOM7-2 PE=2 SV=1
          Length = 77

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 40/44 (90%)

Query: 29 FKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 72
          FK+W+ W+++KAKV THYGFIPLIIIIGMNSDPKP ++ LLSPV
Sbjct: 34 FKDWTNWSLQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77


>sp|O82067|TOM7A_SOLTU Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum
          GN=TOM7-1 PE=3 SV=3
          Length = 72

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 39/43 (90%)

Query: 30 KEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 72
          KEW TWT KKAKV+THYGFIPL+IIIGMNS+PKP + QLLSPV
Sbjct: 30 KEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72


>sp|O42999|TOM7_SCHPO Mitochondrial import receptor subunit tom7 OS=Schizosaccharomyces
          pombe (strain 972 / ATCC 24843) GN=tom7 PE=3 SV=1
          Length = 49

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query: 40 AKVVTHYGFIPLIIIIGM 57
           K VTHYG+IPLI+ +GM
Sbjct: 18 GKTVTHYGWIPLILWLGM 35


>sp|Q6G1G9|TRUA_BARQU tRNA pseudouridine synthase A OS=Bartonella quintana (strain
          Toulouse) GN=truA PE=3 SV=1
          Length = 247

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 2  GSRVTLRTKGKGVKGAKASEEKSMVDSFKEWSTWTMKKA 40
          G ++T  T G+   G  A+ + + VD  K W T+T++ A
Sbjct: 40 GQQLTTTTAGRTDAGVHATGQVAHVDFIKNWQTYTVRDA 78


>sp|A3KQS4|FA63A_DANRE Protein FAM63A OS=Danio rerio GN=fam63a PE=3 SV=1
          Length = 520

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 2   GSRVTLRTKGKGVKGAKASEEKSM-VDSFKEWSTWTMKKAKVVTHY--GFIPLIIIIGM 57
           G++V+++     V GA    E +M    F +W TW  KK  V+T    G  PLI I+ +
Sbjct: 139 GNQVSVQENEGAVAGAMRPAEPTMPAYYFVKWITWKEKKTAVITQSENGPCPLIAIMNI 197


>sp|P53507|TOM7_YEAST Mitochondrial import receptor subunit TOM7 OS=Saccharomyces
          cerevisiae (strain ATCC 204508 / S288c) GN=TOM7 PE=1
          SV=2
          Length = 60

 Score = 29.3 bits (64), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 43 VTHYGFIPLIIIIG-MNSDPKPQVYQLLSPV 72
          V HYG+IP ++ +G  ++  +P    LLSP+
Sbjct: 27 VAHYGWIPFVLYLGWAHTSNRPNFLNLLSPL 57


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,410,955
Number of Sequences: 539616
Number of extensions: 870516
Number of successful extensions: 1776
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 7
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)