Query 035138
Match_columns 72
No_of_seqs 101 out of 115
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:38:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b75_A Protein (50S ribosomal 30.3 10 0.00034 23.1 -0.1 10 47-56 24-33 (94)
2 4fle_A Esterase; structural ge 24.4 24 0.00081 21.4 0.8 13 49-61 2-15 (202)
3 3zwl_E Eukaryotic translation 19.9 23 0.0008 20.2 0.1 15 24-38 16-30 (50)
4 1nij_A Hypothetical protein YJ 14.7 23 0.0008 24.7 -0.9 22 49-70 4-25 (318)
5 3v67_A Sensor protein CPXA; PA 13.6 67 0.0023 21.0 1.1 26 44-69 110-136 (138)
6 2fly_A Proadrenomedullin N-20 12.9 32 0.0011 17.6 -0.5 18 25-42 6-23 (26)
7 1h3f_A Tyrosyl-tRNA synthetase 11.8 32 0.0011 26.3 -1.0 20 50-69 37-57 (432)
8 1qez_A Ppase, S-ppase, protein 11.5 54 0.0019 22.5 0.2 9 44-52 50-58 (173)
9 1sxv_A Inorganic pyrophosphata 11.4 53 0.0018 22.6 0.1 9 44-52 50-58 (172)
10 3q46_A TT-ippase; inorganic py 11.4 55 0.0019 22.5 0.2 9 43-51 53-61 (178)
No 1
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=30.27 E-value=10 Score=23.14 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=8.7
Q ss_pred ehhhheeecc
Q 035138 47 GFIPLIIIIG 56 (72)
Q Consensus 47 GfIPlIIylG 56 (72)
|+||.|||=+
T Consensus 24 G~vPaVvYG~ 33 (94)
T 1b75_A 24 NKFPAIIYGG 33 (94)
T ss_dssp TBCCEEEECS
T ss_pred CCceEEEECC
Confidence 9999999943
No 2
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=24.38 E-value=24 Score=21.38 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=8.9
Q ss_pred hhheeec-cccCCC
Q 035138 49 IPLIIII-GMNSDP 61 (72)
Q Consensus 49 IPlIIyl-G~~S~P 61 (72)
.|.|||| ||+|.+
T Consensus 2 mptIl~lHGf~ss~ 15 (202)
T 4fle_A 2 MSTLLYIHGFNSSP 15 (202)
T ss_dssp -CEEEEECCTTCCT
T ss_pred CcEEEEeCCCCCCC
Confidence 5778877 787665
No 3
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=19.88 E-value=23 Score=20.20 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=11.6
Q ss_pred hhhhhhhhhheeeee
Q 035138 24 SMVDSFKEWSTWTMK 38 (72)
Q Consensus 24 s~~~~~kew~tw~~~ 38 (72)
.-.|+++||..|--+
T Consensus 16 ~RRrlLeEW~awRa~ 30 (50)
T 3zwl_E 16 HQRELLKQWTEYREK 30 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345899999999654
No 4
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=14.68 E-value=23 Score=24.72 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=18.4
Q ss_pred hhheeeccccCCCCcceecccc
Q 035138 49 IPLIIIIGMNSDPKPQVYQLLS 70 (72)
Q Consensus 49 IPlIIylG~~S~PkPsL~~LLs 70 (72)
||+++..|++...|-||++.|.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHH
Confidence 7899999999888888887653
No 5
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=13.60 E-value=67 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=16.9
Q ss_pred EEeehhhheeecccc-CCCCcceeccc
Q 035138 44 THYGFIPLIIIIGMN-SDPKPQVYQLL 69 (72)
Q Consensus 44 ~HyGfIPlIIylG~~-S~PkPsL~~LL 69 (72)
++=+==++-+|+|+. .+|+|=|++++
T Consensus 110 i~l~~~~y~LY~~~~~~~p~pfl~~lf 136 (138)
T 3v67_A 110 IVLADSELLMYVGFKWNEPPPLLLRLF 136 (138)
T ss_dssp EEETTEEEEEEEEEECCCCCCCCCCTT
T ss_pred EEECCccEEEEEEeecCCCcHHHHHHh
Confidence 333444567899995 67777666654
No 6
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=12.94 E-value=32 Score=17.65 Aligned_cols=18 Identities=17% Similarity=0.629 Sum_probs=13.2
Q ss_pred hhhhhhhhheeeeeceEE
Q 035138 25 MVDSFKEWSTWTMKKAKV 42 (72)
Q Consensus 25 ~~~~~kew~tw~~~~~k~ 42 (72)
+-+.-|.|+.|+|.-+|-
T Consensus 6 ~sefrKKwn~w~lsR~kR 23 (26)
T 2fly_A 6 ASEFRKKWNKWALSRXXX 23 (26)
T ss_pred cHHHHHHHHHHHHhcccc
Confidence 345568999999977653
No 7
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=11.84 E-value=32 Score=26.25 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=15.5
Q ss_pred hheeecccc-CCCCcceeccc
Q 035138 50 PLIIIIGMN-SDPKPQVYQLL 69 (72)
Q Consensus 50 PlIIylG~~-S~PkPsL~~LL 69 (72)
|+.+|.|+. |-+.+.|-+++
T Consensus 37 ~~~vy~G~dPTg~sLHlGh~v 57 (432)
T 1h3f_A 37 PLTVKLGADPTRPDLHLGHAV 57 (432)
T ss_dssp CCEEEEEECTTCCSCBHHHHH
T ss_pred CcEEEEcccCCCCCCchhhHH
Confidence 788999995 65678877765
No 8
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=11.46 E-value=54 Score=22.46 Aligned_cols=9 Identities=56% Similarity=0.999 Sum_probs=7.3
Q ss_pred EEeehhhhe
Q 035138 44 THYGFIPLI 52 (72)
Q Consensus 44 ~HyGfIPlI 52 (72)
+-|||||=-
T Consensus 50 ~NYGfIP~T 58 (173)
T 1qez_A 50 FNYGFIPGT 58 (173)
T ss_dssp SEEEECTTC
T ss_pred ccccccccc
Confidence 589999964
No 9
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=11.45 E-value=53 Score=22.60 Aligned_cols=9 Identities=56% Similarity=0.859 Sum_probs=7.4
Q ss_pred EEeehhhhe
Q 035138 44 THYGFIPLI 52 (72)
Q Consensus 44 ~HyGfIPlI 52 (72)
+-|||||=-
T Consensus 50 ~NYGfIP~T 58 (172)
T 1sxv_A 50 TDYGFIEDT 58 (172)
T ss_dssp SEEEEETTC
T ss_pred cCcCccCCc
Confidence 689999964
No 10
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=11.37 E-value=55 Score=22.53 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=7.1
Q ss_pred EEEeehhhh
Q 035138 43 VTHYGFIPL 51 (72)
Q Consensus 43 ~~HyGfIPl 51 (72)
-+-|||||=
T Consensus 53 P~NYGfIP~ 61 (178)
T 3q46_A 53 PVDYGIIPQ 61 (178)
T ss_dssp SSEEEECTT
T ss_pred CcccccCCC
Confidence 367999994
Done!