Query 035138
Match_columns 72
No_of_seqs 101 out of 115
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 15:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035138.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035138hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrs1 b.53.1.1 (S:1-175) Rib 42.7 3.3 0.00024 26.4 0.7 9 47-56 17-25 (175)
2 d1dfup_ b.53.1.1 (P:) Ribosoma 34.5 3.3 0.00024 24.0 -0.4 9 47-55 24-32 (94)
3 d1qeza_ b.40.5.1 (A:) Inorgani 22.4 9.3 0.00068 24.3 0.2 9 43-51 48-56 (170)
4 d1i40a_ b.40.5.1 (A:) Inorgani 18.8 12 0.0009 23.8 0.2 10 43-52 52-61 (175)
5 d1twla_ b.40.5.1 (A:) Inorgani 18.6 13 0.00092 23.7 0.2 9 44-52 53-61 (173)
6 d1feua_ b.53.1.1 (A:) Ribosoma 16.1 12 0.00089 23.7 -0.4 10 47-57 22-31 (185)
7 d2prda_ b.40.5.1 (A:) Inorgani 15.6 16 0.0011 23.3 0.1 9 44-52 53-61 (174)
8 d2f20a1 d.303.1.1 (A:2-232) Hy 14.1 25 0.0019 22.7 0.8 10 42-51 55-64 (231)
9 d1np6a_ c.37.1.10 (A:) Molybdo 13.6 12 0.00088 20.7 -0.9 20 48-67 1-20 (170)
10 d1o5ua_ b.82.1.8 (A:) Hypothet 12.6 94 0.0069 17.2 3.0 29 21-49 9-37 (88)
No 1
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Probab=42.69 E-value=3.3 Score=26.41 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=8.5
Q ss_pred ehhhheeecc
Q 035138 47 GFIPLIIIIG 56 (72)
Q Consensus 47 GfIPlIIylG 56 (72)
|+||.||| |
T Consensus 17 G~VPaViY-G 25 (175)
T d2zjrs1 17 SMIAAVAY-N 25 (175)
T ss_dssp SCCCEEEE-S
T ss_pred CCCCEEEE-C
Confidence 99999999 6
No 2
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=34.47 E-value=3.3 Score=23.99 Aligned_cols=9 Identities=33% Similarity=0.272 Sum_probs=8.2
Q ss_pred ehhhheeec
Q 035138 47 GFIPLIIII 55 (72)
Q Consensus 47 GfIPlIIyl 55 (72)
|+||.|||=
T Consensus 24 G~vPaViYG 32 (94)
T d1dfup_ 24 NKFPAIIYG 32 (94)
T ss_dssp TEEEEEEEC
T ss_pred CCccEEEEC
Confidence 999999993
No 3
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=22.39 E-value=9.3 Score=24.27 Aligned_cols=9 Identities=56% Similarity=0.955 Sum_probs=7.2
Q ss_pred EEEeehhhh
Q 035138 43 VTHYGFIPL 51 (72)
Q Consensus 43 ~~HyGfIPl 51 (72)
-+.|||||=
T Consensus 48 P~nYGfiP~ 56 (170)
T d1qeza_ 48 PFNYGFIPG 56 (170)
T ss_dssp SSEEEECTT
T ss_pred Ccceeeeec
Confidence 378999984
No 4
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli [TaxId: 562]}
Probab=18.77 E-value=12 Score=23.75 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=7.8
Q ss_pred EEEeehhhhe
Q 035138 43 VTHYGFIPLI 52 (72)
Q Consensus 43 ~~HyGfIPlI 52 (72)
-+.|||||=-
T Consensus 52 P~nYGfiP~T 61 (175)
T d1i40a_ 52 PCNYGYINHT 61 (175)
T ss_dssp SSEEEECTTC
T ss_pred CCcCCccccc
Confidence 3699999953
No 5
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=18.57 E-value=13 Score=23.73 Aligned_cols=9 Identities=44% Similarity=0.910 Sum_probs=7.3
Q ss_pred EEeehhhhe
Q 035138 44 THYGFIPLI 52 (72)
Q Consensus 44 ~HyGfIPlI 52 (72)
+.|||||=-
T Consensus 53 ~nYGfiP~T 61 (173)
T d1twla_ 53 VDYGIIPRT 61 (173)
T ss_dssp SEEEECTTC
T ss_pred cccceeecc
Confidence 589999964
No 6
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}
Probab=16.12 E-value=12 Score=23.70 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=8.9
Q ss_pred ehhhheeeccc
Q 035138 47 GFIPLIIIIGM 57 (72)
Q Consensus 47 GfIPlIIylG~ 57 (72)
|+||.||| |-
T Consensus 22 G~VPaViY-G~ 31 (185)
T d1feua_ 22 GKLPGLMY-NR 31 (185)
T ss_dssp TEEEEEEE-CS
T ss_pred CCceEEEE-CC
Confidence 99999999 63
No 7
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]}
Probab=15.56 E-value=16 Score=23.26 Aligned_cols=9 Identities=56% Similarity=1.095 Sum_probs=7.3
Q ss_pred EEeehhhhe
Q 035138 44 THYGFIPLI 52 (72)
Q Consensus 44 ~HyGfIPlI 52 (72)
+.|||||=-
T Consensus 53 ~nYGfiP~T 61 (174)
T d2prda_ 53 GDYGFIPST 61 (174)
T ss_dssp SEEEECSSC
T ss_pred CCcceeccc
Confidence 689999954
No 8
>d2f20a1 d.303.1.1 (A:2-232) Hypothetical protein BT1218 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=14.13 E-value=25 Score=22.70 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=8.1
Q ss_pred EEEEeehhhh
Q 035138 42 VVTHYGFIPL 51 (72)
Q Consensus 42 ~~~HyGfIPl 51 (72)
..++||++|-
T Consensus 55 ~~~~WGl~P~ 64 (231)
T d2f20a1 55 QVFNWGLIPF 64 (231)
T ss_dssp EEEEESCCCT
T ss_pred EEEEcccccc
Confidence 4579999994
No 9
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=13.58 E-value=12 Score=20.66 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=15.4
Q ss_pred hhhheeeccccCCCCcceec
Q 035138 48 FIPLIIIIGMNSDPKPQVYQ 67 (72)
Q Consensus 48 fIPlIIylG~~S~PkPsL~~ 67 (72)
.||.|.+.|+....|-||++
T Consensus 1 m~Pvi~itG~~GSGKTTL~~ 20 (170)
T d1np6a_ 1 MIPLLAFAAWSGTGKTTLLK 20 (170)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 48999999997767766654
No 10
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}
Probab=12.57 E-value=94 Score=17.15 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhhheeeeeceEEEEEeehh
Q 035138 21 EEKSMVDSFKEWSTWTMKKAKVVTHYGFI 49 (72)
Q Consensus 21 ~~~s~~~~~kew~tw~~~~~k~~~HyGfI 49 (72)
+|+-+.--+..|..|.+.-+++-.||..=
T Consensus 9 ~~~l~~lGv~~~gvW~~~pg~f~~~y~~~ 37 (88)
T d1o5ua_ 9 PEKLKELSVEKWPIWEKEVSEFDWYYDTN 37 (88)
T ss_dssp HHHHHHHTGGGSCEEEECSEEEEEECSSC
T ss_pred HHHHHhcCCcccceEeecCcEEEEEcCcc
Confidence 33333334788999999999988887653
Done!