BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035140
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1RH76|DPO1_RICBR DNA polymerase I OS=Rickettsia bellii (strain RML369-C) GN=polA
PE=3 SV=1
Length = 871
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
NFRH +YP YK NRPP P+ ++ L ++ + ++ ++E
Sbjct: 66 NFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILE 106
>sp|Q9RAA9|DPO1_RICFE DNA polymerase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=polA PE=3 SV=1
Length = 922
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
NFRH +YP YK NRPP P+ +V L ++ ++ ++E
Sbjct: 66 NFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILE 106
>sp|Q9RLB6|DPO1_RICHE DNA polymerase I OS=Rickettsia helvetica GN=polA PE=3 SV=1
Length = 921
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E
Sbjct: 66 NFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILE 106
>sp|Q92GB7|DPO1_RICCN DNA polymerase I OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=polA PE=3 SV=1
Length = 875
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
NFRH +YP YK NRPP P+ ++ L ++ ++ ++E
Sbjct: 66 NFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILE 106
>sp|A0KZ94|XNI_SHESA Protein Xni OS=Shewanella sp. (strain ANA-3) GN=xni PE=3 SV=1
Length = 260
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
M++R LYP YK R P P+ + GL L+ +K++ I+ I
Sbjct: 58 MSWRKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSI 98
>sp|B8EAT2|XNI_SHEB2 Protein Xni OS=Shewanella baltica (strain OS223) GN=xni PE=3 SV=1
Length = 262
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP+YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPNYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|A9KTM9|XNI_SHEB9 Protein Xni OS=Shewanella baltica (strain OS195) GN=xni PE=3 SV=1
Length = 262
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|A6WL18|XNI_SHEB8 Protein Xni OS=Shewanella baltica (strain OS185) GN=xni PE=3 SV=1
Length = 262
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|A3D2C6|XNI_SHEB5 Protein Xni OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=xni PE=3 SV=1
Length = 262
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + QGL L+ + AM I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLVALQDHLTAMHIGSI 98
>sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1
Length = 928
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPN 49
FR L+ YK++RPP PD + ++ L A +KAM + ++ + V +
Sbjct: 69 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 115
>sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=polA PE=3 SV=2
Length = 928
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPN 49
FR L+ YK++RPP PD + ++ L A +KAM + ++ + V +
Sbjct: 69 FRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 115
>sp|Q0HSY6|XNI_SHESR Protein Xni OS=Shewanella sp. (strain MR-7) GN=xni PE=3 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + GL L+ +K++ I+ I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLSALQEHLKSLPIQSI 98
>sp|Q0HGN0|XNI_SHESM Protein Xni OS=Shewanella sp. (strain MR-4) GN=xni PE=3 SV=1
Length = 260
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + GL L+ +K++ I+ I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLSALQEHLKSLPIQSI 98
>sp|A4Y4Y4|XNI_SHEPC Protein Xni OS=Shewanella putrefaciens (strain CN-32 / ATCC
BAA-453) GN=xni PE=3 SV=1
Length = 262
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + QGL+ L+ + ++I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI 98
>sp|A1RLT6|XNI_SHESW Protein Xni OS=Shewanella sp. (strain W3-18-1) GN=xni PE=3 SV=1
Length = 262
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + QGL+ L+ + ++I I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAQGLRALQEHLATLNIASI 98
>sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=polA PE=3 SV=1
Length = 930
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQ 44
FR ++ YK++RPP PD + + +Q L I+A+ I ++ ++
Sbjct: 69 FRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVE 110
>sp|Q9HT80|DPO1_PSEAE DNA polymerase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=polA PE=3 SV=1
Length = 913
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPN 49
FR L+ YK NRP PD + ++ L AS++A+ + ++ ++ V +
Sbjct: 66 FRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEAD 112
>sp|A8H6V6|XNI_SHEPA Protein Xni OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
GN=xni PE=3 SV=1
Length = 256
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
+++R TL+P YK R P P+ + GL +KA + I ++
Sbjct: 58 ISWRKTLFPDYKKGRKPMPEALANGLNDIKAYLAEHHIHSVD 99
>sp|A1SYB8|XNI_PSYIN Protein Xni OS=Psychromonas ingrahamii (strain 37) GN=xni PE=3
SV=1
Length = 262
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGL 26
++RH +YP YK R P P+ + QGL
Sbjct: 65 SWRHQIYPEYKQGRKPIPELLKQGL 89
>sp|Q55971|DPO1_SYNY3 DNA polymerase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=polA PE=3 SV=1
Length = 986
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
FRH +YK+NR TP+ + L YL+ ++A++++ I
Sbjct: 75 FRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTI 113
>sp|C5BHA5|XNI_EDWI9 Protein Xni OS=Edwardsiella ictaluri (strain 93-146) GN=xni PE=3
SV=1
Length = 253
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDSQILSHSL 59
++RH L P YK R PD + Q ++ L+A+ A + SP ++ L+ +L
Sbjct: 57 SWRHRLLPGYKAGRQAMPDALAQEMESLRAAFTAQGVACWH----SPGNEADDLAATL 110
>sp|Q07ZE8|XNI_SHEFN Protein Xni OS=Shewanella frigidimarina (strain NCIMB 400) GN=xni
PE=3 SV=1
Length = 255
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQ 44
+R TLY YK R P P + GL +KA++ I + Q
Sbjct: 60 WRKTLYSDYKKGRKPMPTALSDGLVNIKATLAEHDINSFDAQ 101
>sp|Q6D8F6|XNI_ERWCT Protein Xni OS=Erwinia carotovora subsp. atroseptica (strain SCRI
1043 / ATCC BAA-672) GN=xni PE=3 SV=1
Length = 260
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
++RH L P YK R P PD + Q L +K + A+ ++
Sbjct: 57 SWRHQLLPDYKAGRTPMPDNLKQELPQIKTAFAAVGVE 94
>sp|A7MR03|XNI_CROS8 Protein Xni OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=xni
PE=3 SV=1
Length = 251
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLK 30
+RH L P YK RPP PD + Q + L+
Sbjct: 58 WRHQLLPDYKAGRPPMPDDLHQEMPALR 85
>sp|A6TD79|XNI_KLEP7 Protein Xni OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
700721 / MGH 78578) GN=xni PE=3 SV=1
Length = 251
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDSQILSHSLCLL 62
+RH P YK R P P+T+V + L+A+ + I+ SP ++ L+ +L +
Sbjct: 58 WRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRCW----ASPGSEADDLAATLA-V 112
Query: 63 RIAPRGFE 70
++A G +
Sbjct: 113 KVAQAGHQ 120
>sp|B5XUZ0|XNI_KLEP3 Protein Xni OS=Klebsiella pneumoniae (strain 342) GN=xni PE=3 SV=1
Length = 251
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDSQILSHSLCLL 62
+RH P YK R P P+T+V + L+A+ + I+ SP ++ L+ +L +
Sbjct: 58 WRHQRLPEYKAGRAPMPETLVAEMPALRAAFEQRGIRCW----ASPGSEADDLAATLA-V 112
Query: 63 RIAPRGFE 70
++A G +
Sbjct: 113 KVAQAGHQ 120
>sp|Q8EGP9|XNI_SHEON Protein Xni OS=Shewanella oneidensis (strain MR-1) GN=xni PE=3
SV=2
Length = 261
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
+++R LYP YK R P P+ + GL L+ ++ + I+ I
Sbjct: 58 ISWRKQLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQSI 98
>sp|P57506|EX53_BUCAI 5'-3' exonuclease OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=BU431 PE=3 SV=1
Length = 286
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDSQILSHSL 59
FR+ L+ YK NR PD +V +Q L +K + IK + I + + LS+ L
Sbjct: 70 FRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSLSYQL 126
>sp|A1S8B8|XNI_SHEAM Protein Xni OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
GN=xni PE=3 SV=1
Length = 253
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDSQ 53
+++R LY YK R P P+ + +GL LK ++ + + S N DS+
Sbjct: 58 ISWRKHLYEDYKKGRKPMPEALAKGLPALKTKLETLDVH-------SVNADSE 103
>sp|B1KQX1|XNI_SHEWM Protein Xni OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=xni
PE=3 SV=1
Length = 252
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQ 44
++R TLY YK R P P+ + + L LK + +++ I+ +
Sbjct: 59 SWRKTLYEDYKKGRKPMPEALAKSLPALKTHLSELNVNSIDAE 101
>sp|Q9RLA0|DPO1_RICTY DNA polymerase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=polA PE=3 SV=1
Length = 872
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
NFRH +Y +YK NRP P+ ++ L ++ ++ ++E
Sbjct: 66 NFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILE 106
>sp|Q59156|DPO1_CALBD DNA polymerase I OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=polA PE=3 SV=2
Length = 850
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 4 RHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQ 44
R + Y YK NR P PD + + Y++ + A +I +IE +
Sbjct: 64 RKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFE 104
>sp|B5RDV0|XNI_SALG2 Protein Xni OS=Salmonella gallinarum (strain 287/91 / NCTC 13346)
GN=xni PE=3 SV=2
Length = 251
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + I+
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIR 94
>sp|B5QWQ6|XNI_SALEP Protein Xni OS=Salmonella enteritidis PT4 (strain P125109) GN=xni
PE=3 SV=2
Length = 251
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + I+
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIR 94
>sp|B5FTX5|XNI_SALDC Protein Xni OS=Salmonella dublin (strain CT_02021853) GN=xni PE=3
SV=1
Length = 251
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + I+
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGIR 94
>sp|Q7N8Q9|XNI_PHOLL Protein Xni OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=xni PE=3 SV=1
Length = 252
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSI 38
++RH + P YK R P PD + Q + ++AS + +
Sbjct: 56 SWRHQILPDYKAGRSPMPDNLQQEMPQIRASFEQQGV 92
>sp|A8GIF8|XNI_SERP5 Protein Xni OS=Serratia proteamaculans (strain 568) GN=xni PE=3
SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSI 38
++RH + P YK R P PD + Q + L+ + +++ +
Sbjct: 57 SWRHQILPDYKAGRSPMPDNLQQEMPQLRQAFESLGV 93
>sp|P0A550|DPO1_MYCTU DNA polymerase I OS=Mycobacterium tuberculosis GN=polA PE=3 SV=1
Length = 904
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
FR YP YK NR TPD + K + A+ I V+
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVL 117
>sp|P0A551|DPO1_MYCBO DNA polymerase I OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=polA PE=3 SV=1
Length = 904
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVI 41
FR YP YK NR TPD + K + A+ I V+
Sbjct: 79 FRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVL 117
>sp|Q8ZMC9|XNI_SALTY Protein Xni OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=xni PE=3 SV=2
Length = 251
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|A9N2I4|XNI_SALPB Protein Xni OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=xni PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|B4TGM7|XNI_SALHS Protein Xni OS=Salmonella heidelberg (strain SL476) GN=xni PE=3
SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|B5F4R7|XNI_SALA4 Protein Xni OS=Salmonella agona (strain SL483) GN=xni PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|Q8Z433|XNI_SALTI Protein Xni OS=Salmonella typhi GN=xni PE=3 SV=2
Length = 251
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|O05949|DPO1_RICPR DNA polymerase I OS=Rickettsia prowazekii (strain Madrid E) GN=polA
PE=3 SV=1
Length = 867
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 2 NFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE 42
NFRH +Y +YK NRP P ++ L ++ ++E
Sbjct: 66 NFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILE 106
>sp|B4TUJ1|XNI_SALSV Protein Xni OS=Salmonella schwarzengrund (strain CVM19633) GN=xni
PE=3 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|B5BF27|XNI_SALPK Protein Xni OS=Salmonella paratyphi A (strain AKU_12601) GN=xni
PE=3 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|C0PXF9|XNI_SALPC Protein Xni OS=Salmonella paratyphi C (strain RKS4594) GN=xni
PE=3 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|Q5PEL3|XNI_SALPA Protein Xni OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42)
GN=xni PE=3 SV=3
Length = 251
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
>sp|Q57KE5|XNI_SALCH Protein Xni OS=Salmonella choleraesuis (strain SC-B67) GN=xni
PE=3 SV=2
Length = 251
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIK 39
+RH P YK RPP PD + + L+A+ + ++
Sbjct: 58 WRHQRLPDYKAGRPPMPDDLHNEMPALRAAFEQRGVR 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,564,786
Number of Sequences: 539616
Number of extensions: 737606
Number of successful extensions: 1775
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1688
Number of HSP's gapped (non-prelim): 87
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)