Query 035140
Match_columns 72
No_of_seqs 155 out of 1057
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 15:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7i_A Ribonuclease H, RNAse H 99.9 1.4E-25 4.7E-30 162.7 -0.1 67 1-67 76-175 (305)
2 1exn_A 5'-exonuclease, 5'-nucl 99.8 4.2E-22 1.4E-26 143.0 1.4 65 1-65 71-169 (290)
3 1bgx_T TAQ DNA polymerase; DNA 99.7 7.3E-19 2.5E-23 139.2 0.2 64 1-64 71-158 (832)
4 1a76_A Flap endonuclease-1 pro 99.5 5E-15 1.7E-19 106.1 3.3 65 1-65 84-190 (326)
5 2izo_A FEN1, flap structure-sp 99.5 4.3E-15 1.5E-19 107.4 2.5 63 1-63 81-185 (346)
6 1rxw_A Flap structure-specific 99.5 2E-15 6.8E-20 108.5 -2.4 59 1-59 84-183 (336)
7 3ory_A Flap endonuclease 1; hy 99.4 2.1E-14 7.2E-19 105.1 -1.8 60 2-61 99-200 (363)
8 1ul1_X Flap endonuclease-1; pr 99.4 1.4E-13 4.9E-18 100.6 2.4 63 1-63 89-193 (379)
9 3q8k_A Flap endonuclease 1; he 99.3 5.7E-13 1.9E-17 96.7 1.1 59 1-59 89-189 (341)
10 1b43_A Protein (FEN-1); nuclea 99.2 8.6E-13 2.9E-17 94.9 0.7 64 1-64 84-189 (340)
11 3qe9_Y Exonuclease 1; exonucle 98.2 4.9E-07 1.7E-11 65.8 3.2 55 6-60 102-183 (352)
12 2qip_A Protein of unknown func 89.6 0.29 9.8E-06 31.2 3.1 14 43-56 112-126 (165)
13 2h2m_A Protein MURR1, COMM dom 88.1 0.045 1.5E-06 34.4 -1.5 37 3-54 35-72 (108)
14 1gxs_B P-(S)-hydroxymandelonit 75.9 1.7 5.9E-05 27.5 2.4 24 25-52 55-78 (158)
15 1whs_B Serine carboxypeptidase 71.7 2.5 8.7E-05 26.6 2.4 23 26-52 54-76 (153)
16 3vbb_A Seryl-tRNA synthetase, 70.6 5.2 0.00018 30.6 4.2 47 22-68 341-388 (522)
17 3qne_A Seryl-tRNA synthetase, 69.7 5.6 0.00019 30.1 4.2 47 22-68 316-363 (485)
18 3lss_A Seryl-tRNA synthetase; 69.2 6.3 0.00022 29.8 4.4 47 22-68 339-386 (484)
19 3zvk_A VAPC2, toxin of toxin-a 67.1 11 0.00036 22.1 4.4 21 43-65 111-133 (134)
20 3err_A Fusion protein of micro 64.2 10 0.00034 28.8 4.7 47 22-68 404-451 (536)
21 3sz8_A 2-dehydro-3-deoxyphosph 63.3 6.9 0.00024 27.7 3.4 31 12-42 62-96 (285)
22 2dq3_A Seryl-tRNA synthetase; 61.8 11 0.00037 27.6 4.4 47 22-68 299-346 (425)
23 1wle_A Seryl-tRNA synthetase; 60.3 10 0.00034 28.7 4.0 48 20-67 349-397 (501)
24 3fs2_A 2-dehydro-3-deoxyphosph 59.5 6.8 0.00023 27.9 2.9 31 12-42 83-117 (298)
25 1ivy_A Human protective protei 57.4 7 0.00024 28.8 2.7 23 27-52 351-373 (452)
26 2l32_A Small archaeal modifier 56.0 8.8 0.0003 21.6 2.5 42 28-70 22-68 (74)
27 2rod_B NOXA, noxaa; MCL-1, apo 53.8 15 0.00053 17.1 2.7 16 17-32 2-17 (27)
28 2dq0_A Seryl-tRNA synthetase; 52.8 16 0.00055 27.0 4.1 47 21-67 319-366 (455)
29 3kz5_E Protein SOPB; partition 52.2 8.3 0.00028 21.1 1.8 21 14-34 28-48 (52)
30 3tml_A 2-dehydro-3-deoxyphosph 49.6 11 0.00039 26.5 2.7 30 13-42 60-93 (288)
31 2vqe_K 30S ribosomal protein S 47.9 20 0.00068 22.5 3.4 38 8-45 47-84 (129)
32 2qkf_A 3-deoxy-D-manno-octulos 47.5 17 0.00059 25.2 3.3 21 22-42 71-91 (280)
33 3sjr_A Uncharacterized protein 46.6 9 0.00031 25.6 1.6 34 5-38 102-148 (175)
34 2h1c_A Trafficking protein B; 46.0 3.8 0.00013 23.8 -0.2 20 43-65 116-137 (139)
35 2x7v_A Probable endonuclease 4 42.9 18 0.00063 23.3 2.7 22 19-40 265-286 (287)
36 2nwr_A 2-dehydro-3-deoxyphosph 41.2 23 0.0008 24.5 3.2 31 12-42 46-80 (267)
37 1ses_A Seryl-tRNA synthetase; 41.0 16 0.00054 26.7 2.4 48 22-69 295-343 (421)
38 3r8n_K 30S ribosomal protein S 40.8 25 0.00086 21.6 3.0 36 10-45 39-74 (117)
39 1ac5_A KEX1(delta)P; carboxype 38.9 10 0.00036 28.0 1.1 22 27-52 363-384 (483)
40 1o4w_A PIN (PILT N-terminus) d 36.8 4.4 0.00015 24.8 -1.0 25 43-67 112-138 (147)
41 3h87_A Putative uncharacterize 35.9 31 0.0011 21.6 2.9 38 17-54 85-138 (156)
42 3dbo_B Uncharacterized protein 34.0 32 0.0011 21.2 2.7 12 43-54 127-139 (150)
43 3u5c_O RP59A, 40S ribosomal pr 33.0 58 0.002 20.6 3.8 36 10-45 47-83 (137)
44 1o60_A 2-dehydro-3-deoxyphosph 31.9 40 0.0014 23.5 3.2 21 22-42 74-94 (292)
45 4az3_B Lysosomal protective pr 31.9 16 0.00054 22.7 1.0 11 42-52 65-75 (155)
46 1oef_A Apolipoprotein E; glyco 31.2 35 0.0012 15.4 1.9 19 17-35 5-23 (26)
47 2wqp_A Polysialic acid capsule 31.2 82 0.0028 22.6 4.8 50 18-67 253-318 (349)
48 1cpy_A Serine carboxypeptidase 31.0 24 0.00081 25.8 1.9 22 27-52 318-339 (421)
49 1jke_A O145, D-Tyr-trnaTyr dea 30.6 1.1E+02 0.0037 19.6 4.9 37 6-42 80-122 (145)
50 1v96_A Hypothetical protein PH 30.2 11 0.00037 22.4 0.0 22 43-64 110-133 (149)
51 4did_B Inositol phosphate phos 27.6 48 0.0016 21.6 2.7 33 9-41 79-119 (152)
52 1vk2_A Uracil-DNA glycosylase 27.0 53 0.0018 21.4 3.0 29 13-41 105-133 (204)
53 2okv_A Probable D-tyrosyl-tRNA 26.0 61 0.0021 22.1 3.2 34 6-39 81-119 (209)
54 3mhy_A PII-like protein PZ; PI 25.8 56 0.0019 19.3 2.7 17 26-42 13-29 (112)
55 1lng_A SRP19, signal recogniti 25.6 43 0.0015 19.5 2.1 35 7-41 3-46 (87)
56 3t9z_A GLNK3, nitrogen regulat 23.3 55 0.0019 19.8 2.3 17 26-42 13-29 (118)
57 2qlc_A DNA repair protein RADC 23.2 82 0.0028 19.3 3.2 28 26-54 92-120 (126)
58 3ncq_A Nitrogen regulatory pro 22.5 58 0.002 19.7 2.3 17 26-42 13-29 (119)
59 3j20_M 30S ribosomal protein S 22.1 1.1E+02 0.0037 19.3 3.6 36 10-45 48-83 (137)
60 2im5_A Nicotinate phosphoribos 22.1 78 0.0027 23.0 3.3 34 21-54 278-313 (394)
61 3zqu_A Probable aromatic acid 21.7 68 0.0023 21.3 2.7 25 14-40 170-194 (209)
62 2hiy_A Hypothetical protein; C 21.5 42 0.0014 21.8 1.6 16 27-42 25-40 (183)
63 3bbn_K Ribosomal protein S11; 21.5 24 0.00082 22.5 0.4 37 9-45 61-97 (140)
64 3l7p_A Putative nitrogen regul 20.3 58 0.002 19.5 2.0 17 26-42 15-32 (115)
65 3qoc_A Putative metallopeptida 20.1 1.4E+02 0.0049 17.5 4.4 29 14-42 2-30 (135)
No 1
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=99.90 E-value=1.4e-25 Score=162.68 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=63.0
Q ss_pred CCcccccCccccCCCCCCchhHHHhH--------HHHHHHHHHcCCccEE-----------------------EEEecCC
Q 035140 1 MNFRHTLYPSYKNNRPPTPDTMVQGL--------QYLKASIKAMSIKVIE-----------------------IQVVSPN 49 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~Pe~L~~Ql--------~~i~~~l~~lgi~~~~-----------------------v~IvS~D 49 (72)
+||||++||+|||||++|||+|..|+ +.|++++++|||++++ |+|+|+|
T Consensus 76 ~tfR~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~~~g~~V~IvSgD 155 (305)
T 3h7i_A 76 GYWRRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFSLEGHKILIISSD 155 (305)
T ss_dssp CCHHHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cchHhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 38999999999999999999999887 8999999999999998 9999999
Q ss_pred CCc-cccC-CCEEEEEecCC
Q 035140 50 KDS-QILS-HSLCLLRIAPR 67 (72)
Q Consensus 50 KD~-QLv~-~~v~v~~~~k~ 67 (72)
||| |||+ ++|++|++.+.
T Consensus 156 KDl~QLv~~~~V~~~~~~~~ 175 (305)
T 3h7i_A 156 GDFTQLHKYPNVKQWSPMHK 175 (305)
T ss_dssp CCCGGGGGSSSEEEEETTTT
T ss_pred CCccccccCCCeEEEecCCH
Confidence 999 9999 89999998743
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=99.83 E-value=4.2e-22 Score=143.03 Aligned_cols=65 Identities=20% Similarity=0.381 Sum_probs=62.5
Q ss_pred CCcccccCccccCCCCCCc-------hhHHHh-HHHHHHHHHH--cCCccEE-----------------------EEEec
Q 035140 1 MNFRHTLYPSYKNNRPPTP-------DTMVQG-LQYLKASIKA--MSIKVIE-----------------------IQVVS 47 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~P-------e~L~~Q-l~~i~~~l~~--lgi~~~~-----------------------v~IvS 47 (72)
+||||++||+|||||++|| ++|..| ++.+++++++ ||||+++ |+|+|
T Consensus 71 ~tfR~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~~~G~~v~IvS 150 (290)
T 1exn_A 71 SVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIGHLYDHVWLIS 150 (290)
T ss_dssp CHHHHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHGGGSSCEEEEC
T ss_pred chhhhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4799999999999999999 999999 9999999999 9999998 89999
Q ss_pred CCCCc-cccCCCEEEEEec
Q 035140 48 PNKDS-QILSHSLCLLRIA 65 (72)
Q Consensus 48 ~DKD~-QLv~~~v~v~~~~ 65 (72)
+|||+ ||++++|++|++.
T Consensus 151 ~DkDl~Qlv~~~v~v~~~~ 169 (290)
T 1exn_A 151 TDGDWDTLLTDKVSRFSFT 169 (290)
T ss_dssp SCGGGGGGCCSSEEEEETT
T ss_pred CCCChhhcCCCCEEEEECC
Confidence 99999 9999999999875
No 3
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.71 E-value=7.3e-19 Score=139.24 Aligned_cols=64 Identities=30% Similarity=0.599 Sum_probs=61.7
Q ss_pred CCcccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCccEE-----------------------EEEecCCCCc-cccC
Q 035140 1 MNFRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIE-----------------------IQVVSPNKDS-QILS 56 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~-----------------------v~IvS~DKD~-QLv~ 56 (72)
++|||++||+||+||+++|++|..|++.+++++++||||++. +.|+|+|||+ ||++
T Consensus 71 ~tfR~~~~~~YKa~R~~~pe~l~~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~~G~~v~IvS~DkDllql~~ 150 (832)
T 1bgx_T 71 PSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEGYEVRILTADKDLYQLLS 150 (832)
T ss_dssp SCSSSGGGGTTTSCCCCCCTTSTTGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHHHTCCBCCCCSSTTCCTTCC
T ss_pred ccccccchHHHHhccccChHHHHHHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHHcCCeEEEEeCCCChhhcCc
Confidence 489999999999999999999999999999999999999998 7899999999 9999
Q ss_pred CCEEEEEe
Q 035140 57 HSLCLLRI 64 (72)
Q Consensus 57 ~~v~v~~~ 64 (72)
++|.++++
T Consensus 151 ~~v~~~~~ 158 (832)
T 1bgx_T 151 DRIHVLHP 158 (832)
T ss_dssp TTBCBCCS
T ss_pred CCEEEEeC
Confidence 99999987
No 4
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=99.51 E-value=5e-15 Score=106.07 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=58.7
Q ss_pred CCcccccCccccCCCCCCchhHHH-----------------------hHHHHHHHHHHcCCccEE---------------
Q 035140 1 MNFRHTLYPSYKNNRPPTPDTMVQ-----------------------GLQYLKASIKAMSIKVIE--------------- 42 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~Pe~L~~-----------------------Ql~~i~~~l~~lgi~~~~--------------- 42 (72)
++||++.|++||++|+++|+++.. |++.++++|++||||++.
T Consensus 84 ~~~k~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgEAD~~ia~La~~ 163 (326)
T 1a76_A 84 PKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKK 163 (326)
T ss_dssp SCCCCSSCCSSCSSSCSSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT
T ss_pred cccchhhHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCccHHHHHHHHHHC
Confidence 379999999999999999999865 999999999999999999
Q ss_pred ---EEEecCCCCc-cccCCCEEEEEec
Q 035140 43 ---IQVVSPNKDS-QILSHSLCLLRIA 65 (72)
Q Consensus 43 ---v~IvS~DKD~-QLv~~~v~v~~~~ 65 (72)
+.|+|+|+|+ |+++++|.+..+.
T Consensus 164 g~~~~I~S~D~Dll~~~~~~v~~~~~~ 190 (326)
T 1a76_A 164 GDVWAVVSQDYDALLYGAPRVVRNLTT 190 (326)
T ss_dssp TSSSEEECSSSGGGGGTCSEEEESSSS
T ss_pred CCEEEEecCCcccceecCCEEEEeecC
Confidence 7899999999 9999887665443
No 5
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=99.50 E-value=4.3e-15 Score=107.38 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=37.3
Q ss_pred CCcccccCccccCCCCCCchhHH-----------------------HhHHHHHHHHHHcCCccEE---------------
Q 035140 1 MNFRHTLYPSYKNNRPPTPDTMV-----------------------QGLQYLKASIKAMSIKVIE--------------- 42 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~Pe~L~-----------------------~Ql~~i~~~l~~lgi~~~~--------------- 42 (72)
.+||++.|++||++|+++|+++. .|++.++++|++||||++.
T Consensus 81 ~~~r~~~~~~yk~~R~~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~ 160 (346)
T 2izo_A 81 PEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKL 160 (346)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHHhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhC
Confidence 37999999999999999999997 8999999999999999999
Q ss_pred ---EEEecCCCCc-cccCCCEEEEE
Q 035140 43 ---IQVVSPNKDS-QILSHSLCLLR 63 (72)
Q Consensus 43 ---v~IvS~DKD~-QLv~~~v~v~~ 63 (72)
+.|+|+|+|+ |+++++|.++.
T Consensus 161 g~~~~I~S~D~D~l~~~~~~v~~~~ 185 (346)
T 2izo_A 161 GLSWAAASQDYDAILFGAKRLVRNL 185 (346)
T ss_dssp TSSSEEECSSSHHHHTTCSEEEESS
T ss_pred CCeEEEECCCCCcceecCCeEEEEe
Confidence 7899999999 99999887765
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=99.45 E-value=2e-15 Score=108.50 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=55.2
Q ss_pred CCcccccCccccCCCCCCc-----------hhHHH-----------hHHHHHHHHHHcCCccEE----------------
Q 035140 1 MNFRHTLYPSYKNNRPPTP-----------DTMVQ-----------GLQYLKASIKAMSIKVIE---------------- 42 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~P-----------e~L~~-----------Ql~~i~~~l~~lgi~~~~---------------- 42 (72)
++||++.|++||++|+++| +++.. |++.+++++++||||++.
T Consensus 84 ~~~R~~~~~~yk~~R~~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apgeAEA~lA~la~~g 163 (336)
T 1rxw_A 84 PEFKKAEIEERKKRRAEAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPSEGEAQAAYMAAKG 163 (336)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSSCHHHHHHHHHHTT
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCchHHHHHHHHHHcC
Confidence 3799999999999999999 67766 899999999999999999
Q ss_pred --EEEecCCCCc-cccCCCE
Q 035140 43 --IQVVSPNKDS-QILSHSL 59 (72)
Q Consensus 43 --v~IvS~DKD~-QLv~~~v 59 (72)
+.|+|+|+|+ |+++++|
T Consensus 164 ~~~~I~S~D~Dllql~~~~v 183 (336)
T 1rxw_A 164 DVEYTGSQDYDSLLFGSPRL 183 (336)
T ss_dssp SSSEEECSSSHHHHTTCSEE
T ss_pred CeeEEEcCCCCcceecCCeE
Confidence 7899999999 9999988
No 7
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=99.37 E-value=2.1e-14 Score=105.14 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred CcccccCccccCCCCCCchhHHHh-----------------------HHHHHHHHHHcCCccEE----------------
Q 035140 2 NFRHTLYPSYKNNRPPTPDTMVQG-----------------------LQYLKASIKAMSIKVIE---------------- 42 (72)
Q Consensus 2 t~R~~~~p~YKanR~~~Pe~L~~Q-----------------------l~~i~~~l~~lgi~~~~---------------- 42 (72)
+||++.|++||++|+++|+++..| ++.++++|++||||++.
T Consensus 99 ~~K~~~~~~yK~~R~~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apgEADaqiA~La~~g 178 (363)
T 3ory_A 99 ELKAREIERRKAVKEEAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPAEGEAQAAYIVKKG 178 (363)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHhhhhchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCccHHHHHHHHHHCC
Confidence 799999999999999999999987 99999999999999999
Q ss_pred --EEEecCCCCc-cccCCCEEE
Q 035140 43 --IQVVSPNKDS-QILSHSLCL 61 (72)
Q Consensus 43 --v~IvS~DKD~-QLv~~~v~v 61 (72)
+.|+|+|+|+ |+++++|..
T Consensus 179 ~~~~I~S~D~D~l~fg~~~v~~ 200 (363)
T 3ory_A 179 DAYASASQDYDSLLFGSPKLVR 200 (363)
T ss_dssp SCSEEECSSSHHHHTTCSEEEE
T ss_pred CeEEEECCCcCccccCCCeEEE
Confidence 7899999999 999988754
No 8
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=99.36 E-value=1.4e-13 Score=100.62 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=47.3
Q ss_pred CCcccccCccccCCCCCC------------chhH-----------HHhHHHHHHHHHHcCCccEE---------------
Q 035140 1 MNFRHTLYPSYKNNRPPT------------PDTM-----------VQGLQYLKASIKAMSIKVIE--------------- 42 (72)
Q Consensus 1 ~t~R~~~~p~YKanR~~~------------Pe~L-----------~~Ql~~i~~~l~~lgi~~~~--------------- 42 (72)
.+||++.|++||++|.++ |+++ ..|++.++++|++||||++.
T Consensus 89 ~~~K~~~~~~yk~~R~~~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~ 168 (379)
T 1ul1_X 89 PQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKA 168 (379)
T ss_dssp CSCCCCCCCCC-----------------------------CCCCCCSCHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHH
T ss_pred cccccchHHHHHhhhhHHHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCCcHHHHHHHHHhc
Confidence 379999999999999988 7777 78999999999999999999
Q ss_pred ---EEEecCCCCc-cccCCCEEEEE
Q 035140 43 ---IQVVSPNKDS-QILSHSLCLLR 63 (72)
Q Consensus 43 ---v~IvS~DKD~-QLv~~~v~v~~ 63 (72)
+.|+|+|+|+ |+++++|.++.
T Consensus 169 g~~~~iiS~D~Dll~~g~~~v~~~~ 193 (379)
T 1ul1_X 169 GKVYAAATEDMDCLTFGSPVLMRHL 193 (379)
T ss_dssp TSSSEEECSCTHHHHTTCSEEEECS
T ss_pred CCeEEEEecCcCccccccceEEEEe
Confidence 6799999999 99999876654
No 9
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=99.28 E-value=5.7e-13 Score=96.71 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCcccccCccccCCC------------CCCchhH-----------HHhHHHHHHHHHHcCCccEE---------------
Q 035140 1 MNFRHTLYPSYKNNR------------PPTPDTM-----------VQGLQYLKASIKAMSIKVIE--------------- 42 (72)
Q Consensus 1 ~t~R~~~~p~YKanR------------~~~Pe~L-----------~~Ql~~i~~~l~~lgi~~~~--------------- 42 (72)
.+||++.|++||++| +++|+++ ..|++.++++|++||||++.
T Consensus 89 ~~~r~~~~~~yk~~R~~~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~EADd~ia~La~~ 168 (341)
T 3q8k_A 89 PQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVKA 168 (341)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHhHhHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCccHHHHHHHHHhc
Confidence 479999999999655 5699999 99999999999999999998
Q ss_pred ---EEEecCCCCc-cccCCCE
Q 035140 43 ---IQVVSPNKDS-QILSHSL 59 (72)
Q Consensus 43 ---v~IvS~DKD~-QLv~~~v 59 (72)
..|+|+|+|+ |+++++|
T Consensus 169 g~v~~i~s~D~D~l~~~~~~v 189 (341)
T 3q8k_A 169 GKVYAAATEDMDCLTFGSPVL 189 (341)
T ss_dssp TSSSEEECSCTHHHHTTCSEE
T ss_pred CCeEEEEcCCccccccCCcEE
Confidence 5588999999 9998866
No 10
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=99.24 E-value=8.6e-13 Score=94.90 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=57.7
Q ss_pred CCcccccCc---------------cccCCCCCCchhH--------HHhHHHHHHHHHHcCCccEE---------------
Q 035140 1 MNFRHTLYP---------------SYKNNRPPTPDTM--------VQGLQYLKASIKAMSIKVIE--------------- 42 (72)
Q Consensus 1 ~t~R~~~~p---------------~YKanR~~~Pe~L--------~~Ql~~i~~~l~~lgi~~~~--------------- 42 (72)
.+||++.++ +||++|+++|+++ ..|++.++++|++||||++.
T Consensus 84 ~~~K~~~~~~R~~~r~~~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~ 163 (340)
T 1b43_A 84 PEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAK 163 (340)
T ss_dssp CCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHc
Confidence 368999998 7999999999999 89999999999999999999
Q ss_pred ---EEEecCCCCc-cccCCCEEEEEe
Q 035140 43 ---IQVVSPNKDS-QILSHSLCLLRI 64 (72)
Q Consensus 43 ---v~IvS~DKD~-QLv~~~v~v~~~ 64 (72)
+.|+|+|+|+ |+.+++|....+
T Consensus 164 g~~~~i~S~D~D~l~~g~~~v~~~~~ 189 (340)
T 1b43_A 164 GSVYASASQDYDSLLFGAPRLVRNLT 189 (340)
T ss_dssp TSSSEEECSSSHHHHTTCSEEEESTT
T ss_pred CCEEEEEccCCCcceecCcEEEEEec
Confidence 7899999999 999998866543
No 11
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=98.25 E-value=4.9e-07 Score=65.78 Aligned_cols=55 Identities=0% Similarity=-0.008 Sum_probs=42.0
Q ss_pred ccCccccCCCCCCchh--------HHHhHHHHHHHHHHcCCccEE------------------EEEecCCCCc-cccCCC
Q 035140 6 TLYPSYKNNRPPTPDT--------MVQGLQYLKASIKAMSIKVIE------------------IQVVSPNKDS-QILSHS 58 (72)
Q Consensus 6 ~~~p~YKanR~~~Pe~--------L~~Ql~~i~~~l~~lgi~~~~------------------v~IvS~DKD~-QLv~~~ 58 (72)
+.+..|++++.....+ -..+.+.++++|++||||++. +.|+|+|+|+ |+++++
T Consensus 102 ~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~ 181 (352)
T 3qe9_Y 102 KGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKK 181 (352)
T ss_dssp HHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSE
T ss_pred HHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCe
Confidence 3466788877321100 025788999999999999998 6899999999 999998
Q ss_pred EE
Q 035140 59 LC 60 (72)
Q Consensus 59 v~ 60 (72)
|.
T Consensus 182 v~ 183 (352)
T 3qe9_Y 182 VI 183 (352)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 12
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=89.60 E-value=0.29 Score=31.20 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.5
Q ss_pred EEEecCCCCc-cccC
Q 035140 43 IQVVSPNKDS-QILS 56 (72)
Q Consensus 43 v~IvS~DKD~-QLv~ 56 (72)
++|+|||.|| .|+.
T Consensus 112 ~vLvSgD~DF~plv~ 126 (165)
T 2qip_A 112 VILVSGDGDFSLLVE 126 (165)
T ss_dssp EEEECCCGGGHHHHH
T ss_pred EEEEECChhHHHHHH
Confidence 9999999999 8873
No 13
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=88.06 E-value=0.045 Score=34.38 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=30.2
Q ss_pred cccccCccccCCCCCCchhHHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cc
Q 035140 3 FRHTLYPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QI 54 (72)
Q Consensus 3 ~R~~~~p~YKanR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QL 54 (72)
.|.++||+ -+||++.+.+...+.++.. |+++|.|+ ||
T Consensus 35 L~~~lypd------vt~eef~~~~~K~~~lik~---------i~~admd~nql 72 (108)
T 2h2m_A 35 LRSQLYPE------VPPEEFRPFLAKMRGILKS---------IASADMDFNQL 72 (108)
T ss_dssp HHHHHCSS------SCSSTHHHHHTTTSTTHHH---------HTTTCCCTTTS
T ss_pred HHHHHcCC------CCHHHHHHHHHHHHHHHHH---------HHHhhccHHHH
Confidence 36788888 6788888888877777776 78999999 98
No 14
>1gxs_B P-(S)-hydroxymandelonitrIle lyase chain B; inhibitor complex, cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum bicolor} SCOP: c.69.1.5
Probab=75.85 E-value=1.7 Score=27.52 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHcCCccEEEEEecCCCCc
Q 035140 25 GLQYLKASIKAMSIKVIEIQVVSPNKDS 52 (72)
Q Consensus 25 Ql~~i~~~l~~lgi~~~~v~IvS~DKD~ 52 (72)
.++.+.++++. |++ |.|+|||.|+
T Consensus 55 ~~~~~~~Ll~~-gir---VliysGd~D~ 78 (158)
T 1gxs_B 55 LLPVYRELIQA-GLR---VWVYSGDTDS 78 (158)
T ss_dssp CHHHHHHHHHT-TCE---EEEEEETTCS
T ss_pred HHHHHHHHHHc-CCe---EEEEecccCc
Confidence 35777788874 654 6799999998
No 15
>1whs_B Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1wht_B* 1bcs_B* 1bcr_B* 3sc2_B*
Probab=71.65 E-value=2.5 Score=26.58 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCccEEEEEecCCCCc
Q 035140 26 LQYLKASIKAMSIKVIEIQVVSPNKDS 52 (72)
Q Consensus 26 l~~i~~~l~~lgi~~~~v~IvS~DKD~ 52 (72)
++.+.++++. |++ |.|+|||.|+
T Consensus 54 ~~~~~~Ll~~-gir---vlIy~Gd~D~ 76 (153)
T 1whs_B 54 LPIYRELIAA-GLR---IWVFSGDTDA 76 (153)
T ss_dssp HHHHHHHHHT-TCE---EEEEEETTCS
T ss_pred HHHHHHHHhc-Cce---EEEEecCcCc
Confidence 5677777773 554 6799999998
No 16
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=70.56 E-value=5.2 Score=30.58 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=35.9
Q ss_pred HHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCCc
Q 035140 22 MVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPRG 68 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~~ 68 (72)
+...+....++++.||+|...+.+.|+|.-+ .--.=.+.+|.|..++
T Consensus 341 ~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~ 388 (522)
T 3vbb_A 341 FEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGA 388 (522)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCc
Confidence 5566777889999999998778889998776 5444467788887544
No 17
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.67 E-value=5.6 Score=30.08 Aligned_cols=47 Identities=6% Similarity=-0.039 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCCc
Q 035140 22 MVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPRG 68 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~~ 68 (72)
+...+....++++.||+|...+.+.|+|.-+ .--.=.+.+|.|..++
T Consensus 316 ~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~ 363 (485)
T 3qne_A 316 FDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQE 363 (485)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCc
Confidence 4555667788999999998878889998776 5444467788777554
No 18
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=69.24 E-value=6.3 Score=29.77 Aligned_cols=47 Identities=9% Similarity=-0.025 Sum_probs=35.3
Q ss_pred HHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCCc
Q 035140 22 MVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPRG 68 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~~ 68 (72)
+...+....++++.||+|...+.+.|+|.-+ .--.-.+.+|.|..++
T Consensus 339 ~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~ 386 (484)
T 3lss_A 339 LEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGA 386 (484)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechheecCCCCC
Confidence 5556677889999999998878889998766 4433467788887554
No 19
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=67.09 E-value=11 Score=22.07 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=15.5
Q ss_pred EEEecCC-CCc-cccCCCEEEEEec
Q 035140 43 IQVVSPN-KDS-QILSHSLCLLRIA 65 (72)
Q Consensus 43 v~IvS~D-KD~-QLv~~~v~v~~~~ 65 (72)
+.++|.| +|| ++ +++.+.+..
T Consensus 111 ~~lvT~d~~df~~~--~gl~~~nw~ 133 (134)
T 3zvk_A 111 ATLVTNNIKEFKRI--PNLILENWD 133 (134)
T ss_dssp CEEEESSTTTSCSC--TTCEEEECC
T ss_pred CEEEECCHHHhcCC--CCCeeeCCC
Confidence 6799999 999 75 456666643
No 20
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=64.23 E-value=10 Score=28.84 Aligned_cols=47 Identities=4% Similarity=0.032 Sum_probs=34.5
Q ss_pred HHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCCc
Q 035140 22 MVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPRG 68 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~~ 68 (72)
+...+....++++.||+|...+.+.|+|.-+ .--.-.+.+|.|..++
T Consensus 404 ~e~~~~~~~~i~~~LgLpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~ 451 (536)
T 3err_A 404 FQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGR 451 (536)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEcCCcccCCChhheeeeeEecCCCCC
Confidence 4555667788999999998778888998766 4444456778777544
No 21
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=63.33 E-value=6.9 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.5
Q ss_pred cCCCCCCc----hhHHHhHHHHHHHHHHcCCccEE
Q 035140 12 KNNRPPTP----DTMVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 12 KanR~~~P----e~L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
||||...- ..+...|.+++++++.+|+|+++
T Consensus 62 KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~T 96 (285)
T 3sz8_A 62 KANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVIT 96 (285)
T ss_dssp CTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEE
Confidence 45897641 23568889999999999999988
No 22
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=61.76 E-value=11 Score=27.59 Aligned_cols=47 Identities=0% Similarity=-0.023 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCCc
Q 035140 22 MVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPRG 68 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~~ 68 (72)
+...+..+.++++.||+|.-.+.+.|+|..+ .--.-.+.+|.|..++
T Consensus 299 ~~e~i~~~~~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~ 346 (425)
T 2dq3_A 299 LEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNK 346 (425)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCCcCCChHHhccchhhccchhHH
Confidence 4567888999999999994336678888777 6555567778876544
No 23
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=60.26 E-value=10 Score=28.69 Aligned_cols=48 Identities=2% Similarity=-0.034 Sum_probs=34.9
Q ss_pred hhHHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCC
Q 035140 20 DTMVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPR 67 (72)
Q Consensus 20 e~L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~ 67 (72)
+++...+....++++.||+|...+.+.|+|.-+ .--.-.+.+|.|..+
T Consensus 349 ~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~ 397 (501)
T 1wle_A 349 ELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRG 397 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhcccccc
Confidence 456677888899999999997667788888765 433335667777644
No 24
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=59.55 E-value=6.8 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=21.2
Q ss_pred cCCCCCCc----hhHHHhHHHHHHHHHHcCCccEE
Q 035140 12 KNNRPPTP----DTMVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 12 KanR~~~P----e~L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
||||...- ..+...|.+++++++.+|+|+++
T Consensus 83 KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~T 117 (298)
T 3fs2_A 83 KANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLT 117 (298)
T ss_dssp CCC---------CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred cCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEE
Confidence 45897641 12457889999999999999998
No 25
>1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5
Probab=57.38 E-value=7 Score=28.77 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCccEEEEEecCCCCc
Q 035140 27 QYLKASIKAMSIKVIEIQVVSPNKDS 52 (72)
Q Consensus 27 ~~i~~~l~~lgi~~~~v~IvS~DKD~ 52 (72)
+.+.++++..|++ |.|+|||.|+
T Consensus 351 ~~~~~LL~~~gir---VlIYsGD~D~ 373 (452)
T 1ivy_A 351 SQYLKLLSSQKYQ---ILLYNGDVDM 373 (452)
T ss_dssp HHHHHHHHHTCCE---EEEEEETTCS
T ss_pred HHHHHHHhccCce---EEEEeCCCCc
Confidence 4445555544443 6799999998
No 26
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=55.99 E-value=8.8 Score=21.55 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCccEEEE-EecC---CCCcccc-CCCEEEEEecCCcee
Q 035140 28 YLKASIKAMSIKVIEIQ-VVSP---NKDSQIL-SHSLCLLRIAPRGFE 70 (72)
Q Consensus 28 ~i~~~l~~lgi~~~~v~-IvS~---DKD~QLv-~~~v~v~~~~k~~~~ 70 (72)
.+.++++.+|++.-++. .+-+ ++|- ++ ++.|.++....||.|
T Consensus 22 Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~-~l~GD~VeIv~~V~G~~~ 68 (74)
T 2l32_A 22 TYADLVRAVDLSPHEVTVLVDGRPVPEDQ-SVEVDRVKVLRLIKGGLE 68 (74)
T ss_dssp SHHHHHHTTCCCSSCCCEECCCCCCCTTS-SSCCCCEEECSSCSCC--
T ss_pred cHHHHHHHcCCCcceEEEEECCEECCHHH-CCCCCEEEEEEeeccccc
Confidence 47789999999987742 2222 3333 22 689999998888865
No 27
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=53.84 E-value=15 Score=17.13 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=13.3
Q ss_pred CCchhHHHhHHHHHHH
Q 035140 17 PTPDTMVQGLQYLKAS 32 (72)
Q Consensus 17 ~~Pe~L~~Ql~~i~~~ 32 (72)
+.|+++..|+..|.+-
T Consensus 2 elppefaaqlrkigdk 17 (27)
T 2rod_B 2 ELPPEFAAQLRKIGDK 17 (27)
T ss_dssp CCCTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhCCe
Confidence 6799999999888764
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.80 E-value=16 Score=27.03 Aligned_cols=47 Identities=2% Similarity=-0.083 Sum_probs=31.6
Q ss_pred hHHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCC
Q 035140 21 TMVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPR 67 (72)
Q Consensus 21 ~L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~ 67 (72)
++...+..+.++++.||+|...+.+.++|.-+ ..-.=.+.+|.|..+
T Consensus 319 ~~~e~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~ 366 (455)
T 2dq0_A 319 WHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQG 366 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHcCCceEEEECCCccccChhhceeeeeeecCcCC
Confidence 45577888899999999996556666776555 332224667776543
No 29
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=52.24 E-value=8.3 Score=21.06 Aligned_cols=21 Identities=10% Similarity=0.374 Sum_probs=16.5
Q ss_pred CCCCCchhHHHhHHHHHHHHH
Q 035140 14 NRPPTPDTMVQGLQYLKASIK 34 (72)
Q Consensus 14 nR~~~Pe~L~~Ql~~i~~~l~ 34 (72)
+|...|++++++++.|-+-+.
T Consensus 28 d~~~iP~~~IeKIE~lL~e~~ 48 (52)
T 3kz5_E 28 DRSRVPTECIEKIEAILKELE 48 (52)
T ss_dssp ETTTSCHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHHHHh
Confidence 578899999999987765443
No 30
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=49.57 E-value=11 Score=26.53 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=19.1
Q ss_pred CCCCCCc--h--hHHHhHHHHHHHHHHcCCccEE
Q 035140 13 NNRPPTP--D--TMVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 13 anR~~~P--e--~L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
|+|...- . .+...|.+++++++.+|+|+++
T Consensus 60 apRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~t 93 (288)
T 3tml_A 60 ANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLT 93 (288)
T ss_dssp ------------CHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEE
Confidence 4887641 2 2457889999999999999998
No 31
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=47.87 E-value=20 Score=22.47 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=28.5
Q ss_pred CccccCCCCCCchhHHHhHHHHHHHHHHcCCccEEEEE
Q 035140 8 YPSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQV 45 (72)
Q Consensus 8 ~p~YKanR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~v~I 45 (72)
--.||+.|+.+|..-...-+.+-+.+..+|+..++|.+
T Consensus 47 ~~gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~V~v 84 (129)
T 2vqe_K 47 VIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIV 84 (129)
T ss_dssp TTTCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceeEcCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 34699999999877555555666677789999988555
No 32
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=47.53 E-value=17 Score=25.19 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHHcCCccEE
Q 035140 22 MVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
+...+..++++++.+|+|+++
T Consensus 71 l~~gl~~l~~~~~~~Gl~~~t 91 (280)
T 2qkf_A 71 LEEGLKIFEKVKAEFGIPVIT 91 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHHHHHHcCCcEEE
Confidence 678899999999999999988
No 33
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=46.58 E-value=9 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=25.6
Q ss_pred cccCccccCCCCCCchh-------------HHHhHHHHHHHHHHcCC
Q 035140 5 HTLYPSYKNNRPPTPDT-------------MVQGLQYLKASIKAMSI 38 (72)
Q Consensus 5 ~~~~p~YKanR~~~Pe~-------------L~~Ql~~i~~~l~~lgi 38 (72)
..+|+.|+++.+.|+.+ +-.-|...+++|+.|++
T Consensus 102 T~FF~~yq~qhPd~~~ee~L~~Fm~lIgGGiEqGF~EArdIL~GL~V 148 (175)
T 3sjr_A 102 EILMELYRQQHPDWTAPAIRQAFAPLARAGLERGYQEACQVLRQLNV 148 (175)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccc
Confidence 35688999999999743 34456778888888876
No 34
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene regulation; 1.80A {Neisseria gonorrhoeae} SCOP: c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Probab=45.97 E-value=3.8 Score=23.80 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=16.1
Q ss_pred EEEecCC-CCc-cccCCCEEEEEec
Q 035140 43 IQVVSPN-KDS-QILSHSLCLLRIA 65 (72)
Q Consensus 43 v~IvS~D-KD~-QLv~~~v~v~~~~ 65 (72)
+.++|.| +|| .+ ++.+.+|.
T Consensus 116 ~~lvT~d~~df~~~---~l~~~~P~ 137 (139)
T 2h1c_A 116 LTVATRDTGSFFAA---DVAVFNPW 137 (139)
T ss_dssp CEEECSCCHHHHHT---TCCEECTT
T ss_pred CeEEECCHHHHhhC---CCeeeCCC
Confidence 6799999 999 76 58887764
No 35
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=42.92 E-value=18 Score=23.29 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred chhHHHhHHHHHHHHHHcCCcc
Q 035140 19 PDTMVQGLQYLKASIKAMSIKV 40 (72)
Q Consensus 19 Pe~L~~Ql~~i~~~l~~lgi~~ 40 (72)
|+.+...+.+++++++.+||++
T Consensus 265 ~~~~~~s~~~l~~~~~~~g~~~ 286 (287)
T 2x7v_A 265 NEEHAEDIKKVFEIIEKFGIEV 286 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-
T ss_pred CcchHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999986
No 36
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=41.20 E-value=23 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=24.0
Q ss_pred cCCCCCCc--h--hHHHhHHHHHHHHHHcCCccEE
Q 035140 12 KNNRPPTP--D--TMVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 12 KanR~~~P--e--~L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
||+|...- . .+...|..++++++.+|+|++.
T Consensus 46 KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~t 80 (267)
T 2nwr_A 46 KANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT 80 (267)
T ss_dssp CTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEE
T ss_pred cCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEEE
Confidence 56886542 1 3667888899999999999988
No 37
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.00 E-value=16 Score=26.75 Aligned_cols=48 Identities=4% Similarity=0.067 Sum_probs=32.1
Q ss_pred HHHhHHHHHHHHHHcCCccEEEEEecCCCCc-cccCCCEEEEEecCCce
Q 035140 22 MVQGLQYLKASIKAMSIKVIEIQVVSPNKDS-QILSHSLCLLRIAPRGF 69 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~v~IvS~DKD~-QLv~~~v~v~~~~k~~~ 69 (72)
+...+..+.++++.||+|.-.+.+.|+|... .--.-.+.+|.|..+++
T Consensus 295 ~~e~~~~~~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~ 343 (421)
T 1ses_A 295 FQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRY 343 (421)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHCCCceEEEEecCccCCchhhhcccHhheechhccc
Confidence 4466788899999999996546667776544 33333566677765543
No 38
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=40.82 E-value=25 Score=21.60 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=25.7
Q ss_pred cccCCCCCCchhHHHhHHHHHHHHHHcCCccEEEEE
Q 035140 10 SYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQV 45 (72)
Q Consensus 10 ~YKanR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~v~I 45 (72)
.||+.|+.+|..-...-+.+-+.+..+|+..++|.+
T Consensus 39 gfKg~rk~tp~AA~~aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 39 GFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp SCCGGGGSSHHHHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred ccCCCccCCHHHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 589999988876433334455566779999998666
No 39
>1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5
Probab=38.86 E-value=10 Score=28.03 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=14.6
Q ss_pred HHHHHHHHHcCCccEEEEEecCCCCc
Q 035140 27 QYLKASIKAMSIKVIEIQVVSPNKDS 52 (72)
Q Consensus 27 ~~i~~~l~~lgi~~~~v~IvS~DKD~ 52 (72)
+.+.++++. |++ |.|+|||.|+
T Consensus 363 ~~l~~LL~~-gir---VLIYsGD~D~ 384 (483)
T 1ac5_A 363 HLLPGLLES-GIE---IVLFNGDKDL 384 (483)
T ss_dssp GGHHHHHHT-TCE---EEEEEETTCS
T ss_pred HHHHHHHhc-Cce---EEEEECCcCc
Confidence 444555553 433 7799999998
No 40
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=36.83 E-value=4.4 Score=24.84 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=18.9
Q ss_pred EEEecCCCCc-cccC-CCEEEEEecCC
Q 035140 43 IQVVSPNKDS-QILS-HSLCLLRIAPR 67 (72)
Q Consensus 43 v~IvS~DKD~-QLv~-~~v~v~~~~k~ 67 (72)
.+++|+|+|| .... ..|.+.++.+.
T Consensus 112 ~~LvT~D~~l~~~a~~~Gv~vi~~~~~ 138 (147)
T 1o4w_A 112 CILITNDKELKRKAKQRGIPVGYLKED 138 (147)
T ss_dssp CEEECCCHHHHHHHHHTTCCEECCCCC
T ss_pred CEEEECCHHHHHHHHHCCCeEEEecCC
Confidence 5699999999 6654 47888877644
No 41
>3h87_A Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=35.95 E-value=31 Score=21.61 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=24.1
Q ss_pred CCchhHHHhHHHHHHHHHHcCCc-cEE--------------EEEecCCCCc-cc
Q 035140 17 PTPDTMVQGLQYLKASIKAMSIK-VIE--------------IQVVSPNKDS-QI 54 (72)
Q Consensus 17 ~~Pe~L~~Ql~~i~~~l~~lgi~-~~~--------------v~IvS~DKD~-QL 54 (72)
+.+++-......++..++.-|.+ .+. ..++|.|||| .+
T Consensus 85 p~d~~~a~~a~~i~~~l~~~G~~~~i~~~D~lIAAtA~~~gl~LvT~d~dF~~i 138 (156)
T 3h87_A 85 YLTPRIEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSGLTVLHVDKDFDAI 138 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCTTSSCHHHHHHHHHHHHHTCEEEESCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHCCCEEEEeChhhhhh
Confidence 34455444455566667777766 333 6678999999 54
No 42
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=33.96 E-value=32 Score=21.24 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=10.2
Q ss_pred EEEecCCCCc-cc
Q 035140 43 IQVVSPNKDS-QI 54 (72)
Q Consensus 43 v~IvS~DKD~-QL 54 (72)
..++|.|+|| .+
T Consensus 127 ~~LvT~d~dF~~i 139 (150)
T 3dbo_B 127 LPVITQDDDFAAL 139 (150)
T ss_dssp CCEEESSSSGGGG
T ss_pred CEEEECChhhhhC
Confidence 6689999999 65
No 43
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=32.98 E-value=58 Score=20.59 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=25.2
Q ss_pred cccCCC-CCCchhHHHhHHHHHHHHHHcCCccEEEEE
Q 035140 10 SYKNNR-PPTPDTMVQGLQYLKASIKAMSIKVIEIQV 45 (72)
Q Consensus 10 ~YKanR-~~~Pe~L~~Ql~~i~~~l~~lgi~~~~v~I 45 (72)
.+|+.| +.+|-.-...-+.+-+.+..+|+..++|.+
T Consensus 47 gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~v 83 (137)
T 3u5c_O 47 KVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKI 83 (137)
T ss_dssp TSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 689988 688865433334455566679999998766
No 44
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=31.94 E-value=40 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.9
Q ss_pred HHHhHHHHHHHHHHcCCccEE
Q 035140 22 MVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 22 L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
+...+..++++++.+|+|++.
T Consensus 74 l~~gl~~l~~~~~~~Glp~~t 94 (292)
T 1o60_A 74 MEEGLKIFQELKDTFGVKIIT 94 (292)
T ss_dssp HHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCcEEE
Confidence 568889999999999999988
No 45
>4az3_B Lysosomal protective protein 20 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_B*
Probab=31.92 E-value=16 Score=22.70 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=9.6
Q ss_pred EEEEecCCCCc
Q 035140 42 EIQVVSPNKDS 52 (72)
Q Consensus 42 ~v~IvS~DKD~ 52 (72)
.|.|++||.|+
T Consensus 65 rVliy~Gd~D~ 75 (155)
T 4az3_B 65 QILLYNGDVDM 75 (155)
T ss_dssp EEEEEEETTCS
T ss_pred eEEEEecccCc
Confidence 37799999998
No 46
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=31.22 E-value=35 Score=15.37 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCchhHHHhHHHHHHHHHH
Q 035140 17 PTPDTMVQGLQYLKASIKA 35 (72)
Q Consensus 17 ~~Pe~L~~Ql~~i~~~l~~ 35 (72)
|..++++.|+..|-+.+..
T Consensus 5 P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 5 PLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh
Confidence 5668899999888877653
No 47
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=31.18 E-value=82 Score=22.65 Aligned_cols=50 Identities=24% Similarity=0.102 Sum_probs=40.2
Q ss_pred CchhHHHhHHHHHHHHHHcCCccEE--------------EEEecCCCCc-cccC-CCEEEEEecCC
Q 035140 18 TPDTMVQGLQYLKASIKAMSIKVIE--------------IQVVSPNKDS-QILS-HSLCLLRIAPR 67 (72)
Q Consensus 18 ~Pe~L~~Ql~~i~~~l~~lgi~~~~--------------v~IvS~DKD~-QLv~-~~v~v~~~~k~ 67 (72)
.|++|..-+..++++-.++|-.... .+++..|--- +.++ +|+++.+|..|
T Consensus 253 ~p~ef~~lv~~ir~~~~alG~~~k~~~~~E~~~~~~~rrsl~a~~di~~Ge~~t~~nl~~kRPg~G 318 (349)
T 2wqp_A 253 NPDTFKELKQGAHALKLARGGKKDTIIAGEKPTKDFAFASVVADKDIKKGELLSGDNLWVKRPGNG 318 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCTTCCCGGGHHHHHHHSCEEEESSCBCTTCBCCTTTEEEESCTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHhhheeEEEEccccCCCCEecHHHeeEEcCCCC
Confidence 5899999999999999999964333 6777777666 8887 69999999765
No 48
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A*
Probab=31.04 E-value=24 Score=25.79 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCccEEEEEecCCCCc
Q 035140 27 QYLKASIKAMSIKVIEIQVVSPNKDS 52 (72)
Q Consensus 27 ~~i~~~l~~lgi~~~~v~IvS~DKD~ 52 (72)
+.+.++|+. |++ |.|+|||.|+
T Consensus 318 ~~l~~LL~~-gir---VlIysGd~D~ 339 (421)
T 1cpy_A 318 TAVTDLLNQ-DLP---ILVYAGDKDF 339 (421)
T ss_dssp HHHHHHHHT-TCC---EEEEEETTCS
T ss_pred HHHHHHHhc-CCe---EEEEECCccc
Confidence 344555542 444 6799999998
No 49
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=30.58 E-value=1.1e+02 Score=19.62 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=24.7
Q ss_pred ccCccc-cCCCCC----CchhHH-HhHHHHHHHHHHcCCccEE
Q 035140 6 TLYPSY-KNNRPP----TPDTMV-QGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 6 ~~~p~Y-KanR~~----~Pe~L~-~Ql~~i~~~l~~lgi~~~~ 42 (72)
.+|.+. |.|||. +|++.. +-.+.+-+.++..|.++-.
T Consensus 80 TL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~~~V~t 122 (145)
T 1jke_A 80 TLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNTQT 122 (145)
T ss_dssp GGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCccee
Confidence 578888 677764 455544 4457778888888876443
No 50
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=30.22 E-value=11 Score=22.44 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=16.1
Q ss_pred EEEecCC-CCc-cccCCCEEEEEe
Q 035140 43 IQVVSPN-KDS-QILSHSLCLLRI 64 (72)
Q Consensus 43 v~IvS~D-KD~-QLv~~~v~v~~~ 64 (72)
+.|+|.| ||| .+-.-.+.+++|
T Consensus 110 ~~lvT~D~kdf~~i~~~~i~~i~~ 133 (149)
T 1v96_A 110 SLLVTDDPKRYEPIRRFGLDTMPL 133 (149)
T ss_dssp CEEEESCHHHHGGGGGGTCCEEEH
T ss_pred CEEEECCHHHHhhhhhCCeeecCH
Confidence 6699999 699 764446777665
No 51
>4did_B Inositol phosphate phosphatase SOPB; small GTPase, GTP binding, hydrolase-hydrolase complex; HET: GDP; 2.35A {Salmonella enterica subsp}
Probab=27.62 E-value=48 Score=21.56 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=21.3
Q ss_pred ccccCCCCCCchhHHHhHHHHHHH--------HHHcCCccE
Q 035140 9 PSYKNNRPPTPDTMVQGLQYLKAS--------IKAMSIKVI 41 (72)
Q Consensus 9 p~YKanR~~~Pe~L~~Ql~~i~~~--------l~~lgi~~~ 41 (72)
.-.|++|+.+|.++...-...+++ ...+|++..
T Consensus 79 ak~k~dR~AT~qE~~~aK~L~knLI~lIA~~l~~q~gls~k 119 (152)
T 4did_B 79 AKVKADRPATKQEEAAAKALKKNLIELIAARTQQQDGLPAK 119 (152)
T ss_dssp GGGSCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHhcccCcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 357899999999986554433332 355676643
No 52
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=26.99 E-value=53 Score=21.43 Aligned_cols=29 Identities=38% Similarity=0.565 Sum_probs=24.6
Q ss_pred CCCCCCchhHHHhHHHHHHHHHHcCCccE
Q 035140 13 NNRPPTPDTMVQGLQYLKASIKAMSIKVI 41 (72)
Q Consensus 13 anR~~~Pe~L~~Ql~~i~~~l~~lgi~~~ 41 (72)
.||++.++++..-.+++.+.++.+...++
T Consensus 105 ~nr~P~~~Ei~~C~~~L~~ei~~~~P~vI 133 (204)
T 1vk2_A 105 NNRTPTPEEQAACGHFLLAQIEIINPDVI 133 (204)
T ss_dssp GGCCCCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhCCccEE
Confidence 58999999999999999999999965443
No 53
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE, ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Probab=26.02 E-value=61 Score=22.10 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=23.6
Q ss_pred ccCccccCCCCC----CchhHH-HhHHHHHHHHHHcCCc
Q 035140 6 TLYPSYKNNRPP----TPDTMV-QGLQYLKASIKAMSIK 39 (72)
Q Consensus 6 ~~~p~YKanR~~----~Pe~L~-~Ql~~i~~~l~~lgi~ 39 (72)
.||.+.|.||+. +|.+.. .-+..+-+.|+..|.+
T Consensus 81 TL~ad~KG~RPsF~~Aa~pe~A~~LYe~Fv~~lr~~~~~ 119 (209)
T 2okv_A 81 TLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRP 119 (209)
T ss_dssp GGSCCCSSSSCCCTTBCCHHHHHHHHHHHHHHHHHHSCG
T ss_pred eccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 578888999986 454444 4457777788777764
No 54
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=25.79 E-value=56 Score=19.33 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCccEE
Q 035140 26 LQYLKASIKAMSIKVIE 42 (72)
Q Consensus 26 l~~i~~~l~~lgi~~~~ 42 (72)
++.++++|...|++.+.
T Consensus 13 l~~vk~AL~~~G~~g~T 29 (112)
T 3mhy_A 13 LDEVREALTSLGIQGLT 29 (112)
T ss_dssp HHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 57788899999998887
No 55
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=25.59 E-value=43 Score=19.51 Aligned_cols=35 Identities=17% Similarity=0.522 Sum_probs=22.6
Q ss_pred cCccccCCCC------CCchhH---HHhHHHHHHHHHHcCCccE
Q 035140 7 LYPSYKNNRP------PTPDTM---VQGLQYLKASIKAMSIKVI 41 (72)
Q Consensus 7 ~~p~YKanR~------~~Pe~L---~~Ql~~i~~~l~~lgi~~~ 41 (72)
+||.|=.... ..|.++ .+.+..|.+++..||+++.
T Consensus 3 IyP~Y~ds~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~ 46 (87)
T 1lng_A 3 IWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPK 46 (87)
T ss_dssp ECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCE
T ss_pred EecccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeE
Confidence 5777743322 234444 3456778899999999983
No 56
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=23.30 E-value=55 Score=19.79 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=14.5
Q ss_pred HHHHHHHHHHcCCccEE
Q 035140 26 LQYLKASIKAMSIKVIE 42 (72)
Q Consensus 26 l~~i~~~l~~lgi~~~~ 42 (72)
++.++++|...|++.+.
T Consensus 13 l~~Vk~AL~~~G~~g~T 29 (118)
T 3t9z_A 13 LECVKKALEERGFVGMT 29 (118)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHCCCceEE
Confidence 57788999999998887
No 57
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=23.22 E-value=82 Score=19.26 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCccEEEEEecCCCCc-cc
Q 035140 26 LQYLKASIKAMSIKVIEIQVVSPNKDS-QI 54 (72)
Q Consensus 26 l~~i~~~l~~lgi~~~~v~IvS~DKD~-QL 54 (72)
-..+++.++.+||+.+.-+|++. ..+ .+
T Consensus 92 T~~l~~a~~ll~I~llDHiIig~-~~~~Sf 120 (126)
T 2qlc_A 92 TSILKKAGDLLQIELLDHVIVGN-NDWFSF 120 (126)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECS-SCEEET
T ss_pred HHHHHHHHHHCCCeEeeeEEEeC-CcEEEe
Confidence 45688899999999999888874 444 44
No 58
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=22.48 E-value=58 Score=19.70 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCccEE
Q 035140 26 LQYLKASIKAMSIKVIE 42 (72)
Q Consensus 26 l~~i~~~l~~lgi~~~~ 42 (72)
++.++++|...|++.+.
T Consensus 13 l~~Vk~AL~~~G~~g~T 29 (119)
T 3ncq_A 13 FPEVKAALEERGFYGMT 29 (119)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 57788999999998888
No 59
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.09 E-value=1.1e+02 Score=19.33 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=24.1
Q ss_pred cccCCCCCCchhHHHhHHHHHHHHHHcCCccEEEEE
Q 035140 10 SYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQV 45 (72)
Q Consensus 10 ~YKanR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~v~I 45 (72)
.||..|+.+|-.-...-+.+-+.+..+|+..++|.+
T Consensus 48 gfkg~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~v 83 (137)
T 3j20_M 48 VKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRV 83 (137)
T ss_dssp CSCTTTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred eecCCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 477778888865433334455566678998888665
No 60
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=22.07 E-value=78 Score=22.96 Aligned_cols=34 Identities=6% Similarity=-0.003 Sum_probs=26.6
Q ss_pred hHHHhHHHHHHHHHHcCCcc-EEEEEecCCCCc-cc
Q 035140 21 TMVQGLQYLKASIKAMSIKV-IEIQVVSPNKDS-QI 54 (72)
Q Consensus 21 ~L~~Ql~~i~~~l~~lgi~~-~~v~IvS~DKD~-QL 54 (72)
++......+++.++.+|++. ...+|+|+|=|. .+
T Consensus 278 D~~~~~~~~r~~ld~~G~~~~~k~Ii~SdgLd~~~i 313 (394)
T 2im5_A 278 DPEIFIEKAVRRYEELRVDPKIKYIIFSDSLTPQRA 313 (394)
T ss_dssp CHHHHHHHHHHHHHHTTCCGGGCEEEECSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCcCccEEEEcCCCCHHHH
Confidence 44555677888899999987 667999999887 44
No 61
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=21.66 E-value=68 Score=21.29 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=20.1
Q ss_pred CCCCCchhHHHhHHHHHHHHHHcCCcc
Q 035140 14 NRPPTPDTMVQGLQYLKASIKAMSIKV 40 (72)
Q Consensus 14 nR~~~Pe~L~~Ql~~i~~~l~~lgi~~ 40 (72)
+|++..|++..++ +.++|+.|||+.
T Consensus 170 a~p~~iediv~~v--v~r~ld~lgi~~ 194 (209)
T 3zqu_A 170 HQPQSVEDLVDFV--VARILNTLGIPQ 194 (209)
T ss_dssp TCCCSHHHHHHHH--HHHHHHHHTCCC
T ss_pred cCCCCHHHHHHHH--HHHHHHhCCCCC
Confidence 3677888888877 779999999864
No 62
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=21.51 E-value=42 Score=21.76 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=14.1
Q ss_pred HHHHHHHHHcCCccEE
Q 035140 27 QYLKASIKAMSIKVIE 42 (72)
Q Consensus 27 ~~i~~~l~~lgi~~~~ 42 (72)
..++++|+.+|+.-+.
T Consensus 25 adLr~~l~~lGf~~V~ 40 (183)
T 2hiy_A 25 AELRQELTNLGLEKVE 40 (183)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCccce
Confidence 5688999999998888
No 63
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=21.50 E-value=24 Score=22.52 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=25.5
Q ss_pred ccccCCCCCCchhHHHhHHHHHHHHHHcCCccEEEEE
Q 035140 9 PSYKNNRPPTPDTMVQGLQYLKASIKAMSIKVIEIQV 45 (72)
Q Consensus 9 p~YKanR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~v~I 45 (72)
-.||+.|+.+|..-...-+.+-+.+..+|+..++|.+
T Consensus 61 ~GfKg~rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~v 97 (140)
T 3bbn_K 61 CGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMI 97 (140)
T ss_dssp SSCCTTSCSSHHHHHHHHTSGGGTSTTTCCCEEEEEE
T ss_pred eeEcccccCCHHHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 4699999999866444334444555668998888655
No 64
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=20.34 E-value=58 Score=19.50 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCC-ccEE
Q 035140 26 LQYLKASIKAMSI-KVIE 42 (72)
Q Consensus 26 l~~i~~~l~~lgi-~~~~ 42 (72)
++.++++|...|+ +.+.
T Consensus 15 l~~Vk~AL~~~G~d~g~T 32 (115)
T 3l7p_A 15 LEDLKAALVQSGFIKGMT 32 (115)
T ss_dssp HHHHHHHHHHHTCGGGEE
T ss_pred HHHHHHHHHHCCCCccEE
Confidence 5778889999999 8877
No 65
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae}
Probab=20.14 E-value=1.4e+02 Score=17.45 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=21.9
Q ss_pred CCCCCchhHHHhHHHHHHHHHHcCCccEE
Q 035140 14 NRPPTPDTMVQGLQYLKASIKAMSIKVIE 42 (72)
Q Consensus 14 nR~~~Pe~L~~Ql~~i~~~l~~lgi~~~~ 42 (72)
|.+-.++++..-+..+++.+...|+..+-
T Consensus 2 ~~~~~~~~~~~Rl~~l~~~m~~~~~da~l 30 (135)
T 3qoc_A 2 NAPLADTRFLQRRRALSAQLAAKRIDAML 30 (135)
T ss_dssp -CCCCCCHHHHHHHHHHHTHHHHTCSEEE
T ss_pred CCCcChHHHHHHHHHHHHHHHHCCCCEEE
Confidence 44444677888899999999999987665
Done!