BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035144
MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK
HDETSQHVEATE

High Scoring Gene Products

Symbol, full name Information P value
AT5G53650 protein from Arabidopsis thaliana 6.9e-15

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035144
        (72 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2168671 - symbol:AT5G53650 "AT5G53650" species...   189  6.9e-15   1


>TAIR|locus:2168671 [details] [associations]
            symbol:AT5G53650 "AT5G53650" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0006626 "protein targeting to mitochondrion"
            evidence=RCA] [GO:0009062 "fatty acid catabolic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015476
            EMBL:AY084399 EMBL:BT004659 EMBL:AK119088 IPI:IPI00517248
            RefSeq:NP_568796.1 UniGene:At.42955 STRING:Q9FJB9 PaxDb:Q9FJB9
            PRIDE:Q9FJB9 DNASU:835446 EnsemblPlants:AT5G53650.1 GeneID:835446
            KEGG:ath:AT5G53650 TAIR:At5g53650 eggNOG:NOG271866
            HOGENOM:HOG000241558 InParanoid:Q9FJB9 OMA:DYKVAHE PhylomeDB:Q9FJB9
            ProtClustDB:CLSN2690010 Genevestigator:Q9FJB9 Uniprot:Q9FJB9
        Length = 72

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 39/72 (54%), Positives = 44/72 (61%)

Query:     1 MGYVLRVRXXXXXXXXXXXXXXXLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60
             MGYV RVR               L +L+ DYK+AHESISQQ KS H SLDRRISTLE+L+
Sbjct:     1 MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query:    61 HDETSQHVEATE 72
               E  Q  E TE
Sbjct:    61 QSEAPQLAETTE 72


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.128   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       72        57   0.00091  102 3  10 22  0.45    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  477 (51 KB)
  Total size of DFA:  96 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Total cpu time:  11.73u 0.10s 11.83t   Elapsed:  00:00:01
  Start:  Fri May 10 05:55:04 2013   End:  Fri May 10 05:55:05 2013

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