Query 035144
Match_columns 72
No_of_seqs 27 out of 29
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 09:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12732 YtxH: YtxH-like prote 96.1 0.071 1.5E-06 32.3 7.3 45 9-53 2-53 (74)
2 PF06305 DUF1049: Protein of u 95.2 0.1 2.2E-06 30.4 5.5 41 9-61 25-65 (68)
3 COG2960 Uncharacterized protei 88.2 3.2 7E-05 28.4 6.5 54 8-61 15-90 (103)
4 PF13334 DUF4094: Domain of un 87.6 0.88 1.9E-05 29.8 3.4 51 9-59 10-88 (95)
5 COG1382 GimC Prefoldin, chaper 84.8 2.2 4.8E-05 29.4 4.4 35 22-60 59-93 (119)
6 TIGR02209 ftsL_broad cell divi 84.2 6.8 0.00015 23.4 7.6 49 8-56 3-57 (85)
7 PRK10697 DNA-binding transcrip 77.6 10 0.00022 25.9 5.6 29 34-62 78-106 (118)
8 PF10805 DUF2730: Protein of u 76.9 17 0.00036 23.7 6.3 14 48-61 46-59 (106)
9 PF04631 Baculo_44: Baculoviru 76.3 8.6 0.00019 31.3 5.7 39 21-59 7-45 (371)
10 TIGR02976 phageshock_pspB phag 75.9 4.6 0.0001 25.7 3.3 20 46-65 51-70 (75)
11 PRK11677 hypothetical protein; 75.8 24 0.00052 24.5 7.3 32 9-40 7-47 (134)
12 PF11382 DUF3186: Protein of u 75.1 12 0.00026 28.3 5.9 50 7-59 9-61 (308)
13 TIGR02338 gimC_beta prefoldin, 74.9 5.2 0.00011 25.8 3.5 36 21-60 55-90 (110)
14 PF13887 MRF_C1: Myelin gene r 74.0 3 6.4E-05 24.0 1.9 17 42-58 19-35 (36)
15 PF04380 BMFP: Membrane fusoge 72.9 11 0.00023 23.6 4.4 14 46-59 66-79 (79)
16 PF06667 PspB: Phage shock pro 72.7 8 0.00017 24.7 3.8 45 21-65 19-70 (75)
17 PRK10920 putative uroporphyrin 72.2 29 0.00064 27.7 7.7 22 7-28 37-58 (390)
18 PF06295 DUF1043: Protein of u 70.7 29 0.00063 23.2 6.5 18 9-26 3-20 (128)
19 TIGR01837 PHA_granule_1 poly(h 69.8 8.4 0.00018 25.6 3.6 14 46-59 98-111 (118)
20 PF10393 Matrilin_ccoil: Trime 69.6 21 0.00045 21.1 5.1 14 46-59 32-45 (47)
21 PRK10803 tol-pal system protei 68.7 20 0.00044 26.5 5.8 18 43-60 92-109 (263)
22 PF11471 Sugarporin_N: Maltopo 67.6 11 0.00023 23.0 3.5 13 48-60 36-48 (60)
23 PF07047 OPA3: Optic atrophy 3 67.5 33 0.00072 23.1 6.2 14 46-59 114-127 (134)
24 PF07426 Dynactin_p22: Dynacti 66.4 4.3 9.3E-05 28.9 1.8 14 47-60 8-21 (174)
25 COG2841 Uncharacterized protei 65.5 5 0.00011 26.0 1.8 24 46-69 26-49 (72)
26 KOG4267 Predicted membrane pro 64.0 3.9 8.3E-05 28.2 1.1 32 1-32 20-53 (110)
27 PRK09458 pspB phage shock prot 63.7 12 0.00026 24.2 3.3 20 46-65 51-70 (75)
28 cd00632 Prefoldin_beta Prefold 63.7 19 0.00042 22.8 4.3 35 21-59 51-85 (105)
29 PF13404 HTH_AsnC-type: AsnC-t 63.7 9.9 0.00022 21.2 2.6 34 24-57 9-42 (42)
30 COG3771 Predicted membrane pro 63.5 29 0.00063 23.7 5.3 42 12-65 49-90 (97)
31 PRK06975 bifunctional uroporph 63.0 33 0.00072 28.6 6.5 45 16-60 333-394 (656)
32 PRK13182 racA polar chromosome 60.8 24 0.00052 25.2 4.7 20 46-65 134-153 (175)
33 PF04508 Pox_A_type_inc: Viral 60.2 8.4 0.00018 20.1 1.7 12 48-59 5-16 (23)
34 PF04899 MbeD_MobD: MbeD/MobD 59.2 42 0.00091 21.1 5.6 36 23-58 11-56 (70)
35 cd00890 Prefoldin Prefoldin is 58.5 5.7 0.00012 25.0 1.2 22 24-45 78-99 (129)
36 PRK09343 prefoldin subunit bet 57.8 24 0.00052 23.4 4.1 37 21-61 59-95 (121)
37 KOG3029 Glutathione S-transfer 57.1 20 0.00043 29.2 4.2 39 19-58 268-306 (370)
38 TIGR02978 phageshock_pspC phag 56.2 43 0.00094 22.7 5.2 26 38-63 85-110 (121)
39 PF09304 Cortex-I_coil: Cortex 55.7 64 0.0014 22.2 5.9 36 23-58 20-65 (107)
40 PF06212 GRIM-19: GRIM-19 prot 55.6 58 0.0013 22.5 5.8 30 8-37 30-59 (130)
41 PF07889 DUF1664: Protein of u 55.5 66 0.0014 22.2 6.5 35 24-58 34-75 (126)
42 PRK11415 hypothetical protein; 54.4 30 0.00066 21.4 3.9 16 46-61 26-41 (74)
43 PRK00888 ftsB cell division pr 52.4 64 0.0014 21.1 7.0 13 46-58 50-62 (105)
44 PF04325 DUF465: Protein of un 50.0 16 0.00034 20.7 2.0 16 46-61 8-23 (49)
45 PF08946 Osmo_CC: Osmosensory 49.9 18 0.00039 21.7 2.3 27 32-62 11-37 (46)
46 cd03197 GST_C_mPGES2 GST_C fam 49.7 20 0.00044 25.2 2.9 41 19-59 58-98 (149)
47 PRK00846 hypothetical protein; 48.8 15 0.00032 23.6 1.9 8 50-57 12-19 (77)
48 PRK06281 putative monovalent c 48.6 39 0.00085 23.8 4.2 29 11-39 34-62 (154)
49 KOG2709 Uncharacterized conser 47.5 38 0.00081 28.9 4.5 41 31-71 70-110 (560)
50 PRK03449 putative inner membra 46.1 1.1E+02 0.0025 23.6 6.7 33 8-40 234-266 (304)
51 PF10205 KLRAQ: Predicted coil 45.8 68 0.0015 21.7 4.8 32 27-58 31-68 (102)
52 PF04612 T2SM: Type II secreti 43.1 8 0.00017 25.3 0.0 55 6-60 14-71 (160)
53 PF09278 MerR-DNA-bind: MerR, 43.0 61 0.0013 18.2 4.0 47 14-60 13-59 (65)
54 PF12072 DUF3552: Domain of un 42.5 1.2E+02 0.0026 21.4 7.7 19 12-30 6-24 (201)
55 PF09849 DUF2076: Uncharacteri 42.2 50 0.0011 25.0 4.1 27 31-59 44-70 (247)
56 cd07597 BAR_SNX8 The Bin/Amphi 42.1 59 0.0013 23.7 4.4 39 25-63 122-164 (246)
57 PF09527 ATPase_gene1: Putativ 41.7 33 0.00072 19.4 2.5 21 12-32 35-55 (55)
58 KOG4431 Uncharacterized protei 41.4 32 0.0007 23.3 2.7 29 3-33 61-91 (100)
59 PF07536 HWE_HK: HWE histidine 40.9 51 0.0011 20.5 3.4 19 42-60 27-45 (83)
60 PF07716 bZIP_2: Basic region 40.7 69 0.0015 18.1 4.4 23 36-58 28-53 (54)
61 PF05325 DUF730: Protein of un 39.7 75 0.0016 22.2 4.4 31 26-56 82-118 (122)
62 PF09006 Surfac_D-trimer: Lung 38.7 52 0.0011 19.6 3.0 19 37-59 3-21 (46)
63 COG3619 Predicted membrane pro 38.4 51 0.0011 24.6 3.6 31 8-38 177-207 (226)
64 PF15313 HEXIM: Hexamethylene 38.1 46 0.001 22.9 3.1 12 46-57 113-124 (124)
65 PF05283 MGC-24: Multi-glycosy 37.3 32 0.0007 25.2 2.4 24 9-32 160-185 (186)
66 PRK13729 conjugal transfer pil 37.1 4.9 0.00011 33.3 -2.1 32 9-40 16-47 (475)
67 PF06120 Phage_HK97_TLTM: Tail 36.3 1.1E+02 0.0025 23.9 5.3 26 13-38 25-50 (301)
68 COG4741 Predicted secreted end 36.2 1.8E+02 0.0039 21.6 6.8 35 18-52 11-45 (175)
69 PRK08387 putative monovalent c 36.1 51 0.0011 22.5 3.1 30 11-40 34-63 (131)
70 PF05461 ApoL: Apolipoprotein 36.0 2E+02 0.0044 22.2 7.4 53 8-60 252-310 (313)
71 PF10018 Med4: Vitamin-D-recep 35.6 1.2E+02 0.0026 21.2 5.0 28 31-58 7-36 (188)
72 COG3297 PulL Type II secretory 35.6 1.9E+02 0.0041 23.9 6.7 46 3-49 238-284 (390)
73 TIGR00985 3a0801s04tom mitocho 35.1 51 0.0011 23.3 3.1 22 11-33 10-31 (148)
74 COG2900 SlyX Uncharacterized p 33.9 30 0.00065 22.3 1.6 12 48-59 5-16 (72)
75 PF04977 DivIC: Septum formati 33.9 96 0.0021 17.8 5.5 25 32-56 23-50 (80)
76 PF03672 UPF0154: Uncharacteri 33.7 88 0.0019 19.6 3.6 25 10-34 5-29 (64)
77 cd00584 Prefoldin_alpha Prefol 33.6 23 0.00051 22.7 1.1 33 22-58 76-108 (129)
78 PF07701 HNOBA: Heme NO bindin 33.5 1.4E+02 0.0031 21.7 5.2 36 26-61 165-201 (219)
79 PHA02414 hypothetical protein 33.3 1E+02 0.0022 21.4 4.2 20 47-66 67-86 (111)
80 PF14006 YqzL: YqzL-like prote 33.2 31 0.00067 20.6 1.4 21 16-36 7-27 (47)
81 PF08963 DUF1878: Protein of u 32.7 24 0.00052 24.4 1.1 12 47-58 2-13 (113)
82 PF00126 HTH_1: Bacterial regu 32.4 38 0.00082 19.2 1.7 15 46-60 27-41 (60)
83 TIGR00637 ModE_repress ModE mo 32.1 53 0.0011 21.0 2.5 26 35-60 16-44 (99)
84 PF03286 Pox_Ag35: Pox virus A 32.1 1.2E+02 0.0026 22.5 4.7 21 46-66 168-188 (200)
85 PF06912 DUF1275: Protein of u 32.0 87 0.0019 21.5 3.7 22 9-30 172-193 (209)
86 PF13314 DUF4083: Domain of un 31.8 1.2E+02 0.0026 18.9 4.0 32 28-59 27-58 (58)
87 PF14448 Nuc_N: Nuclease N ter 31.7 56 0.0012 20.5 2.5 22 31-59 32-53 (60)
88 smart00555 GIT Helical motif i 31.6 71 0.0015 17.1 2.6 22 33-54 8-29 (31)
89 PLN02595 cytochrome c oxidase 31.2 44 0.00095 22.8 2.1 24 8-32 45-68 (102)
90 PRK11677 hypothetical protein; 31.0 1.5E+02 0.0032 20.6 4.8 45 11-60 5-49 (134)
91 PF10212 TTKRSYEDQ: Predicted 30.6 55 0.0012 27.7 3.0 25 33-61 302-326 (518)
92 PF11053 DNA_Packaging: Termin 30.2 94 0.002 22.5 3.8 41 27-70 47-87 (153)
93 PF10392 COG5: Golgi transport 29.7 1.3E+02 0.0029 19.8 4.2 17 46-62 99-115 (132)
94 PF10152 DUF2360: Predicted co 29.5 90 0.0019 21.4 3.5 20 39-58 16-35 (148)
95 PRK11169 leucine-responsive tr 28.6 34 0.00074 23.1 1.2 37 24-60 20-56 (164)
96 PF08702 Fib_alpha: Fibrinogen 28.6 2E+02 0.0044 19.8 5.6 28 31-58 98-125 (146)
97 PF15324 TALPID3: Hedgehog sig 28.5 1.5E+02 0.0032 27.9 5.4 16 46-61 134-149 (1252)
98 PRK11059 regulatory protein Cs 28.2 3.2E+02 0.0069 22.0 6.9 48 3-53 5-57 (640)
99 PF08663 HalX: HalX domain; I 28.0 53 0.0012 20.5 2.0 15 46-60 38-52 (71)
100 PF00804 Syntaxin: Syntaxin; 27.9 1.3E+02 0.0029 17.5 5.0 30 31-60 43-72 (103)
101 PF04102 SlyX: SlyX; InterPro 27.6 48 0.001 20.0 1.7 10 49-58 2-11 (69)
102 PF11118 DUF2627: Protein of u 27.6 66 0.0014 21.0 2.4 17 17-33 52-68 (77)
103 PF15061 DUF4538: Domain of un 27.5 59 0.0013 20.2 2.1 22 7-28 5-26 (58)
104 PRK02793 phi X174 lysis protei 27.5 47 0.001 20.5 1.6 11 48-58 5-15 (72)
105 PF14270 DUF4358: Domain of un 27.3 69 0.0015 20.1 2.4 22 41-62 58-79 (106)
106 PF11853 DUF3373: Protein of u 27.3 1.4E+02 0.0029 25.1 4.7 14 48-61 35-48 (489)
107 PF04582 Reo_sigmaC: Reovirus 27.0 1.3E+02 0.0028 24.1 4.3 24 36-63 136-159 (326)
108 PF10570 Myelin-PO_C: Myelin-P 26.9 53 0.0011 21.3 1.8 20 48-67 11-30 (70)
109 PF10661 EssA: WXG100 protein 26.8 1E+02 0.0022 21.4 3.4 24 9-32 121-144 (145)
110 PF04799 Fzo_mitofusin: fzo-li 26.6 1.3E+02 0.0029 21.9 4.0 34 24-57 100-133 (171)
111 cd03777 MATH_TRAF3 Tumor Necro 26.6 1.8E+02 0.0039 20.7 4.7 21 43-63 19-39 (186)
112 cd00930 Cyt_c_Oxidase_VIII Cyt 26.5 96 0.0021 18.1 2.7 24 8-32 18-41 (43)
113 PF07851 TMPIT: TMPIT-like pro 26.2 1.6E+02 0.0035 23.3 4.8 23 28-50 13-35 (330)
114 COG1522 Lrp Transcriptional re 26.0 65 0.0014 20.5 2.2 38 23-60 13-50 (154)
115 PF04912 Dynamitin: Dynamitin 25.8 57 0.0012 25.1 2.2 16 47-62 212-227 (388)
116 PF06736 DUF1211: Protein of u 25.7 1.7E+02 0.0037 18.1 4.2 33 18-54 46-78 (92)
117 PRK02870 heat shock protein Ht 25.5 41 0.00089 26.2 1.4 15 46-60 321-335 (336)
118 cd06580 TM_PBP1_transp_TpRbsC_ 25.5 94 0.002 22.0 3.1 25 4-28 138-162 (234)
119 PRK11179 DNA-binding transcrip 25.0 50 0.0011 21.9 1.5 37 24-60 15-51 (153)
120 PF12755 Vac14_Fab1_bd: Vacuol 25.0 1.9E+02 0.0041 18.4 4.2 46 5-62 41-86 (97)
121 cd07653 F-BAR_CIP4-like The F- 24.9 2E+02 0.0043 20.2 4.6 13 46-58 118-130 (251)
122 PRK04406 hypothetical protein; 24.9 59 0.0013 20.3 1.8 11 48-58 8-18 (75)
123 PRK12573 putative monovalent c 24.8 99 0.0021 21.4 3.0 28 11-38 37-64 (140)
124 PRK02119 hypothetical protein; 24.7 59 0.0013 20.1 1.7 11 48-58 6-16 (73)
125 PF11690 DUF3287: Protein of u 24.6 2.4E+02 0.0051 19.3 4.8 29 24-56 40-68 (109)
126 PRK00736 hypothetical protein; 24.5 44 0.00096 20.4 1.1 10 49-58 3-12 (68)
127 PHA02047 phage lambda Rz1-like 24.5 2.4E+02 0.0052 19.3 7.0 48 6-54 2-51 (101)
128 PF11460 DUF3007: Protein of u 24.4 1.1E+02 0.0023 21.0 3.0 22 29-56 69-90 (104)
129 PRK12505 putative monovalent c 24.3 2.1E+02 0.0045 20.4 4.6 31 11-41 48-78 (159)
130 COG3346 Uncharacterized conser 24.1 1.3E+02 0.0028 23.1 3.7 21 13-33 21-41 (252)
131 PF10129 OpgC_C: OpgC protein; 23.7 2.2E+02 0.0047 22.1 5.0 37 11-47 44-80 (358)
132 COG3165 Uncharacterized protei 23.7 1.3E+02 0.0029 22.6 3.7 15 46-60 188-202 (204)
133 PRK12765 flagellar capping pro 23.6 1.1E+02 0.0024 25.5 3.6 25 35-59 534-561 (595)
134 PF08614 ATG16: Autophagy prot 23.6 2.3E+02 0.0051 19.7 4.8 29 32-60 143-174 (194)
135 PRK04325 hypothetical protein; 23.5 63 0.0014 20.0 1.7 11 48-58 6-16 (74)
136 PHA02675 ORF104 fusion protein 23.5 1.5E+02 0.0032 20.0 3.5 25 33-61 44-68 (90)
137 PF15605 Toxin_52: Putative to 23.5 1.3E+02 0.0027 20.7 3.3 25 39-63 49-74 (103)
138 PRK12509 putative monovalent c 23.4 1.1E+02 0.0024 21.1 3.1 29 11-39 35-63 (137)
139 TIGR00943 2a6301s02 monovalent 23.0 1.3E+02 0.0027 19.9 3.2 29 11-39 12-40 (107)
140 PF11998 DUF3493: Protein of u 22.8 85 0.0018 20.1 2.2 34 12-45 24-63 (75)
141 PRK11301 livM leucine/isoleuci 22.6 1E+02 0.0022 24.5 3.1 25 4-28 308-332 (419)
142 PF06705 SF-assemblin: SF-asse 22.6 2.6E+02 0.0057 20.1 4.9 19 40-58 88-106 (247)
143 PF12597 DUF3767: Protein of u 22.5 72 0.0016 21.5 1.9 14 11-24 43-56 (118)
144 PF01920 Prefoldin_2: Prefoldi 22.3 34 0.00073 20.7 0.3 18 26-43 55-72 (106)
145 PF06825 HSBP1: Heat shock fac 22.1 1.9E+02 0.0042 17.4 4.3 25 36-60 20-44 (54)
146 TIGR03409 urea_trans_UrtB urea 22.0 1.2E+02 0.0025 22.1 3.1 25 4-28 188-212 (291)
147 PHA00442 host recBCD nuclease 21.9 98 0.0021 19.4 2.3 22 42-63 18-39 (59)
148 PF10779 XhlA: Haemolysin XhlA 21.8 1.5E+02 0.0032 17.8 3.1 7 51-57 20-26 (71)
149 PF00509 Hemagglutinin: Haemag 21.7 71 0.0015 27.3 2.1 29 34-62 372-414 (550)
150 COG4461 LprI Uncharacterized p 21.6 3.6E+02 0.0077 20.2 6.0 60 5-64 46-106 (185)
151 PF13748 ABC_membrane_3: ABC t 21.2 3.8E+02 0.0083 20.5 6.3 48 11-60 137-184 (237)
152 PRK09391 fixK transcriptional 21.0 67 0.0015 22.2 1.6 52 6-60 156-207 (230)
153 PRK08386 putative monovalent c 20.9 1.2E+02 0.0026 21.1 2.8 29 11-39 36-64 (151)
154 PLN03193 beta-1,3-galactosyltr 20.9 1.1E+02 0.0025 25.0 3.1 14 46-59 94-107 (408)
155 TIGR03418 chol_sulf_TF putativ 20.9 1.1E+02 0.0024 21.0 2.7 24 37-60 17-43 (291)
156 PF02285 COX8: Cytochrome oxid 20.8 1.9E+02 0.004 16.9 3.2 25 8-33 18-42 (44)
157 PF05644 Miff: Mitochondrial a 20.7 1.1E+02 0.0024 23.2 2.8 21 37-61 199-219 (246)
158 PF15110 TMEM141: TMEM141 prot 20.7 1.2E+02 0.0026 20.5 2.7 21 11-31 27-49 (94)
159 PF07756 DUF1612: Protein of u 20.6 1E+02 0.0022 21.8 2.4 18 7-24 92-109 (128)
160 PF01484 Col_cuticle_N: Nemato 20.6 1.6E+02 0.0035 15.9 5.6 28 18-45 15-42 (53)
161 PLN03155 cytochrome c oxidase 20.3 2.4E+02 0.0053 17.9 4.1 18 34-51 37-54 (63)
162 PF14965 BRI3BP: Negative regu 20.3 1E+02 0.0022 22.9 2.4 15 47-61 162-176 (177)
163 TIGR03339 phn_lysR aminoethylp 20.2 81 0.0018 21.2 1.8 25 37-61 13-40 (279)
164 PF06401 Alpha-2-MRAP_C: Alpha 20.2 2.8E+02 0.0061 20.9 4.8 24 31-54 184-207 (214)
165 COG3937 Uncharacterized conser 20.2 1.2E+02 0.0025 21.0 2.6 12 47-58 93-104 (108)
166 PF08898 DUF1843: Domain of un 20.1 1.7E+02 0.0037 17.9 3.1 17 43-59 37-53 (53)
167 COG3416 Uncharacterized protei 20.1 1.5E+02 0.0034 22.9 3.5 22 34-59 56-77 (233)
168 PF04799 Fzo_mitofusin: fzo-li 20.0 2.5E+02 0.0054 20.5 4.4 30 27-60 114-143 (171)
169 PF05531 NPV_P10: Nucleopolyhe 20.0 2E+02 0.0042 18.5 3.5 20 26-45 8-30 (75)
No 1
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=96.07 E-value=0.071 Score=32.34 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035144 9 LASFFTGAATASALGLYI-------LHNDYKLAHESISQQVKSLHQSLDRRI 53 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~-------L~kD~~~ah~~ia~qv~~ly~aL~~RI 53 (72)
+.+|++|++++.++|+++ +.++++..-..+..+++++++....+|
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~ 53 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKV 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999985 677777777777777777776655543
No 2
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=95.20 E-value=0.1 Score=30.38 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144 9 LASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~ 61 (72)
+.||+.|+.++..+++....+-. .+. ..++++|+.+|++.+
T Consensus 25 l~~f~~G~llg~l~~~~~~~~~r--------~~~----~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPSRLRLR--------RRI----RRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHHHHH
Confidence 56888888887776665543322 222 367788888887654
No 3
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.21 E-value=3.2 Score=28.45 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHH---------------------HHHHHHHHHHhhhhcc
Q 035144 8 RLASFFTGAATASALGLYILHNDYKLAHES-ISQQVKSL---------------------HQSLDRRISTLETLKH 61 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~-ia~qv~~l---------------------y~aL~~RIsaLE~~~~ 61 (72)
|+--++.=.....+.+.+-.-+|++.+-.+ +..+.+.| .++|+.||++||..-.
T Consensus 15 ~~e~~~~ql~e~~a~~~~~~~~evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 15 RFEDIAAQLSEDAAGAAQEVRAEVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555566666777788888776544 34444333 8999999999999765
No 4
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=87.56 E-value=0.88 Score=29.78 Aligned_cols=51 Identities=31% Similarity=0.386 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhHHH-------------------HHHHHHhHHHHH------HHHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 9 LASFFTGAATASALG-------------------LYILHNDYKLAH------ESISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 9 laSFf~GaA~As~~G-------------------~y~L~kD~~~ah------~~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
++||++|.-++.=.. ++++.+|..... ..+..||.+- -.+|||+|+.||+.
T Consensus 10 ~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~~~~~~~~di~~eV~kTh~aIq~LdKtIS~LEME 88 (95)
T PF13334_consen 10 IASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKKLKESDQRDIMGEVSKTHEAIQSLDKTISSLEME 88 (95)
T ss_pred HHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999998887332 233445543222 1122233322 35899999999985
No 5
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=84.78 E-value=2.2 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 22 LGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 22 ~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.|-.++..|...+++.+-.+.+ .|+.||.+||++-
T Consensus 59 VG~llvk~~k~~~~~eL~er~E----~Le~ri~tLekQe 93 (119)
T COG1382 59 VGNLLVKVSKEEAVDELEERKE----TLELRIKTLEKQE 93 (119)
T ss_pred hhhHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4666777788888888887777 8899999999864
No 6
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=84.25 E-value=6.8 Score=23.43 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 035144 8 RLASFFTGAATASALGLYILHNDYKLAHESISQQVKSL------HQSLDRRISTL 56 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~l------y~aL~~RIsaL 56 (72)
|+..+++.+.+.++++++..+-++......+++.-+.+ ++.|...|+.|
T Consensus 3 ~l~~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 3 KLYVLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888877776665554443333322211 55555555554
No 7
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=77.61 E-value=10 Score=25.94 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 035144 34 AHESISQQVKSLHQSLDRRISTLETLKHD 62 (72)
Q Consensus 34 ah~~ia~qv~~ly~aL~~RIsaLE~~~~~ 62 (72)
+-++.-++++.=++.+|+||..+|.-=.+
T Consensus 78 s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS 106 (118)
T PRK10697 78 SSSELLDEVDRELAAGEQRLREMERYVTS 106 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44445556666688999999999985444
No 8
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.91 E-value=17 Score=23.71 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhhcc
Q 035144 48 SLDRRISTLETLKH 61 (72)
Q Consensus 48 aL~~RIsaLE~~~~ 61 (72)
..++|+++||..=+
T Consensus 46 ~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 46 EHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999997533
No 9
>PF04631 Baculo_44: Baculovirus hypothetical protein; InterPro: IPR006725 This family includes several hypothetical baculoviral proteins, with predicted molecular weights of approximately 44 kDa.
Probab=76.34 E-value=8.6 Score=31.25 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 21 ALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 21 ~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
.+.+|++|+=...||..|...-..+++.|+.||.-+++.
T Consensus 7 ii~l~~~y~Ply~a~~~I~~~q~~y~~~l~dri~~~~~~ 45 (371)
T PF04631_consen 7 IIFLYLLYIPLYYAYVNIKSEQEEYNNTLDDRIDYIQEV 45 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467899999999999999999899999999999988654
No 10
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=75.89 E-value=4.6 Score=25.67 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhcccCcc
Q 035144 46 HQSLDRRISTLETLKHDETS 65 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~~~~ 65 (72)
-+.|+.||.+||+-=..+.+
T Consensus 51 a~rm~eRI~tLE~ILd~e~P 70 (75)
T TIGR02976 51 ADRLEERIDTLERILDAEHP 70 (75)
T ss_pred HHHHHHHHHHHHHHHcCCCc
Confidence 45899999999997655543
No 11
>PRK11677 hypothetical protein; Provisional
Probab=75.78 E-value=24 Score=24.54 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhHHHHHH---------HHHhHHHHHHHHHH
Q 035144 9 LASFFTGAATASALGLYI---------LHNDYKLAHESISQ 40 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~---------L~kD~~~ah~~ia~ 40 (72)
+++|.+|+.++.+++-|. |.++.+.+...+.+
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~ 47 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEE 47 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 477888887777776653 34455555444433
No 12
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=75.12 E-value=12 Score=28.34 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 7 VRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 7 vRlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
|=|++.|.+.+++-++|.++|.+-+-. .+..|+.+| ++.|+.++.+|+++
T Consensus 9 vSl~aVFlALavGI~lG~~~l~~~l~~---~l~~~~~~lr~e~~~l~~~~~~~~~~ 61 (308)
T PF11382_consen 9 VSLAAVFLALAVGIVLGSGPLQPNLID---SLEDQFDSLREENDELRAELDALQAQ 61 (308)
T ss_pred HHHHHHHHHHHHHHHhcchhhchhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999997754432 222333333 44555555555544
No 13
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.85 E-value=5.2 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 21 ALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 21 ~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.+|..++-+|+..+...+..+.+ .++.+|..||+..
T Consensus 55 ~VG~vlv~~~~~e~~~~l~~r~e----~ie~~i~~lek~~ 90 (110)
T TIGR02338 55 SVGNLLVKTDKEEAIQELKEKKE----TLELRVKTLQRQE 90 (110)
T ss_pred HhchhhheecHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 45667788999999999988888 4577777776643
No 14
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=74.02 E-value=3 Score=23.99 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 035144 42 VKSLHQSLDRRISTLET 58 (72)
Q Consensus 42 v~~ly~aL~~RIsaLE~ 58 (72)
...+.+.||.||..||+
T Consensus 19 Lck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 19 LCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHhccHHHHHHHHhh
Confidence 34445689999999996
No 15
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=72.88 E-value=11 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
-++||+||.+||.+
T Consensus 66 l~~LEarl~~LE~~ 79 (79)
T PF04380_consen 66 LEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHhcC
Confidence 57888888888863
No 16
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=72.67 E-value=8 Score=24.68 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH----HHHHH---HHHHHHHHHHhhhhcccCcc
Q 035144 21 ALGLYILHNDYKLAHESISQ----QVKSL---HQSLDRRISTLETLKHDETS 65 (72)
Q Consensus 21 ~~G~y~L~kD~~~ah~~ia~----qv~~l---y~aL~~RIsaLE~~~~~~~~ 65 (72)
.+.+++-|+--|.+...++. +.++| -+.|+.||++||+-=..+.+
T Consensus 19 p~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILdae~P 70 (75)
T PF06667_consen 19 PIWLILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERILDAEHP 70 (75)
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44555555555555444432 34444 56799999999997654443
No 17
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=72.24 E-value=29 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 035144 7 VRLASFFTGAATASALGLYILH 28 (72)
Q Consensus 7 vRlaSFf~GaA~As~~G~y~L~ 28 (72)
+++...+.-.++|.++|+|...
T Consensus 37 ~~l~~~aili~la~g~g~y~~~ 58 (390)
T PRK10920 37 LVLSAVAIAIALAAGAGLYYHG 58 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 4566677777778888888654
No 18
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=70.66 E-value=29 Score=23.22 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 035144 9 LASFFTGAATASALGLYI 26 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~ 26 (72)
+++|++|+.++-+++-+.
T Consensus 3 ~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467888887776665554
No 19
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=69.79 E-value=8.4 Score=25.61 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
.+.|++||.+||.+
T Consensus 98 v~~L~~RI~~Le~~ 111 (118)
T TIGR01837 98 IEALSAKIEQLAVQ 111 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999999975
No 20
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=69.61 E-value=21 Score=21.11 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
.+++.+||++||++
T Consensus 32 L~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 32 LDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56899999999986
No 21
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.66 E-value=20 Score=26.47 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 035144 43 KSLHQSLDRRISTLETLK 60 (72)
Q Consensus 43 ~~ly~aL~~RIsaLE~~~ 60 (72)
+++|.-||+|++.+|...
T Consensus 92 ~~~y~dld~r~~~~~~~~ 109 (263)
T PRK10803 92 KQIYLQIDSLSSGGAAAQ 109 (263)
T ss_pred HHHHHHHHHHHhccccCC
Confidence 344999999998776433
No 22
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=67.65 E-value=11 Score=23.00 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhc
Q 035144 48 SLDRRISTLETLK 60 (72)
Q Consensus 48 aL~~RIsaLE~~~ 60 (72)
.||+||++.|.+.
T Consensus 36 ~LE~rL~~ae~ra 48 (60)
T PF11471_consen 36 ALEQRLQAAEQRA 48 (60)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666544
No 23
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=67.55 E-value=33 Score=23.09 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
-+.|+.+|..|+..
T Consensus 114 l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 114 LEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHH
Confidence 45788888888764
No 24
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=66.39 E-value=4.3 Score=28.91 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhc
Q 035144 47 QSLDRRISTLETLK 60 (72)
Q Consensus 47 ~aL~~RIsaLE~~~ 60 (72)
+.||+||..||.+-
T Consensus 8 ~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 8 DILEKRIEELERRV 21 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999976
No 25
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.48 E-value=5 Score=26.04 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhhhcccCcccchh
Q 035144 46 HQSLDRRISTLETLKHDETSQHVE 69 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~~~~~~~~ 69 (72)
|.+||+||...|.-.++++...++
T Consensus 26 hn~LDd~I~~~E~n~~~~s~~ev~ 49 (72)
T COG2841 26 HNELDDRIKRAEGNRQPGSDAEVS 49 (72)
T ss_pred HhHHHHHHHHHhcCCCCCcHHHHH
Confidence 789999999999988888776654
No 26
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=63.97 E-value=3.9 Score=28.23 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=26.2
Q ss_pred CchhhhHHHHHHHHHHHHHhHH--HHHHHHHhHH
Q 035144 1 MGYVLRVRLASFFTGAATASAL--GLYILHNDYK 32 (72)
Q Consensus 1 mg~mlrvRlaSFf~GaA~As~~--G~y~L~kD~~ 32 (72)
|||+-|--+.|+.+|.+.++.+ +-|.+++|=+
T Consensus 20 iGY~kkgSi~SL~aGl~~G~l~g~~s~~l~~~~~ 53 (110)
T KOG4267|consen 20 IGYLKKGSIPSLAAGLLFGALAGYGSYLLSRDKK 53 (110)
T ss_pred eeeeecCCcchHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7999999999999999888654 5678887755
No 27
>PRK09458 pspB phage shock protein B; Provisional
Probab=63.74 E-value=12 Score=24.21 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhcccCcc
Q 035144 46 HQSLDRRISTLETLKHDETS 65 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~~~~ 65 (72)
=+.++.||.+||+-=..|.+
T Consensus 51 A~rm~~RI~tLE~ILDae~P 70 (75)
T PRK09458 51 AERMRERIQALEAILDAEHP 70 (75)
T ss_pred HHHHHHHHHHHHHHHcccCC
Confidence 34789999999997665543
No 28
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=63.71 E-value=19 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 21 ALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 21 ~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
.+|-.|+..|...+-..+..+.+ .++.+|+.|++.
T Consensus 51 ~VG~vfv~~~~~ea~~~Le~~~e----~le~~i~~l~~~ 85 (105)
T cd00632 51 LVGNVLVKQEKEEARTELKERLE----TIELRIKRLERQ 85 (105)
T ss_pred HhhhHHhhccHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45667888888888888888777 455555555543
No 29
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=63.66 E-value=9.9 Score=21.15 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=25.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLE 57 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE 57 (72)
+-.|.+|-..+...|+.+++-=-.+.-+||.+||
T Consensus 9 l~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 9 LRLLQEDGRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 4568888888999999988655678889999987
No 30
>COG3771 Predicted membrane protein [Function unknown]
Probab=63.54 E-value=29 Score=23.65 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=24.4
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc
Q 035144 12 FFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDETS 65 (72)
Q Consensus 12 Ff~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~~~ 65 (72)
|.+|++.+-.+-..|-.| .+++.. .|+|.|..+|.+-..+|.
T Consensus 49 F~~G~~lgwli~g~fy~k-~~l~~~-----------~l~rqiKr~~~q~~~~t~ 90 (97)
T COG3771 49 FAAGFALGWLICGLFYLK-VRLSLM-----------RLERQIKRLENQLSDVTV 90 (97)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHH-----------HHHHHHHHHHhhcCccee
Confidence 788999988765544322 334333 556666666665554443
No 31
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=63.02 E-value=33 Score=28.59 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHhHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhhhhc
Q 035144 16 AATASALGLYILHNDYKLAHES-----------------ISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 16 aA~As~~G~y~L~kD~~~ah~~-----------------ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.+++.+.|+|++++-.-.-.+. ++.|..+....++.|+..||.+-
T Consensus 333 ~~~~~g~~~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l 394 (656)
T PRK06975 333 LACAAAVGGYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKL 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778766633222211 22223444778888888888843
No 32
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=60.76 E-value=24 Score=25.21 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhcccCcc
Q 035144 46 HQSLDRRISTLETLKHDETS 65 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~~~~ 65 (72)
-.+||.||..+|....+..+
T Consensus 134 l~~le~~~~~~e~~~~~~~~ 153 (175)
T PRK13182 134 LQKLEARLKKLEPIYITPDT 153 (175)
T ss_pred HHHHHHHHHHHHhhccCCcc
Confidence 56889999998876555544
No 33
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=60.15 E-value=8.4 Score=20.09 Aligned_cols=12 Identities=50% Similarity=0.570 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhh
Q 035144 48 SLDRRISTLETL 59 (72)
Q Consensus 48 aL~~RIsaLE~~ 59 (72)
.|-.||+.||++
T Consensus 5 rlr~rI~dLer~ 16 (23)
T PF04508_consen 5 RLRNRISDLERQ 16 (23)
T ss_pred HHHHHHHHHHHH
Confidence 688999999985
No 34
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=59.20 E-value=42 Score=21.06 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=27.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHhhh
Q 035144 23 GLYILHNDYKLAHESISQQVKSL----------HQSLDRRISTLET 58 (72)
Q Consensus 23 G~y~L~kD~~~ah~~ia~qv~~l----------y~aL~~RIsaLE~ 58 (72)
++=-|.+||..-|+.......++ ..+|+.++..|..
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~ 56 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQ 56 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45678999999999988887777 5566666666654
No 35
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.54 E-value=5.7 Score=24.96 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=17.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 035144 24 LYILHNDYKLAHESISQQVKSL 45 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~l 45 (72)
.|++.+++.-|-+.+....+.+
T Consensus 78 ~~~ve~~~~eA~~~l~~r~~~l 99 (129)
T cd00890 78 GVYVEKSLEEAIEFLKKRLETL 99 (129)
T ss_pred CEEEEecHHHHHHHHHHHHHHH
Confidence 7788889999988888887744
No 36
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.77 E-value=24 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144 21 ALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 21 ~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~ 61 (72)
.+|--|+..|...+-..+....+ .++.||..||+...
T Consensus 59 ~VG~vlv~qd~~e~~~~l~~r~E----~ie~~ik~lekq~~ 95 (121)
T PRK09343 59 IVGNLLVKVDKTKVEKELKERKE----LLELRSRTLEKQEK 95 (121)
T ss_pred HhhHHHhhccHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45666777788888777777776 66778888877543
No 37
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=57.14 E-value=20 Score=29.18 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035144 19 ASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 19 As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~ 58 (72)
.++..||++.|-.|.-| .|++.-+.||+++|+=..+|-+
T Consensus 268 ~GAtAM~lisK~LKkkh-ni~D~Re~lydA~d~Wvaalgk 306 (370)
T KOG3029|consen 268 CGATAMYLISKMLKKKH-NISDEREHLYDAADQWVAALGK 306 (370)
T ss_pred hhHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHhCC
Confidence 34567999999999877 6778888999999999999954
No 38
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=56.24 E-value=43 Score=22.74 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccC
Q 035144 38 ISQQVKSLHQSLDRRISTLETLKHDE 63 (72)
Q Consensus 38 ia~qv~~ly~aL~~RIsaLE~~~~~~ 63 (72)
.-++++.=++.+|+||..+|.-=.+.
T Consensus 85 ~l~~~~~~~~~~e~Rl~~mE~yVTS~ 110 (121)
T TIGR02978 85 ALREVKREFRDLERRLRNMERYVTSD 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445555889999999999854443
No 39
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.72 E-value=64 Score=22.16 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHhhh
Q 035144 23 GLYILHNDYKLAHESISQQVKSL----------HQSLDRRISTLET 58 (72)
Q Consensus 23 G~y~L~kD~~~ah~~ia~qv~~l----------y~aL~~RIsaLE~ 58 (72)
++=.-.+|+|.|+..++.|-..| .+++.+||..|+.
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455689999999998886655 6677777777765
No 40
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=55.59 E-value=58 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 035144 8 RLASFFTGAATASALGLYILHNDYKLAHES 37 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~ 37 (72)
+-.++|+|.++..++|+|.+.+-.+.-+..
T Consensus 30 sg~~~~~~~~~~~~~G~y~~~~~~r~~r~~ 59 (130)
T PF06212_consen 30 SGWTMFAGGAGIMAYGFYKVGQGNRERREL 59 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999887665533
No 41
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.50 E-value=66 Score=22.18 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHhhh
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSL-------DRRISTLET 58 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL-------~~RIsaLE~ 58 (72)
||+=.+...-|-.+++.|++.++++| ..||..|..
T Consensus 34 M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~ 75 (126)
T PF07889_consen 34 MFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDD 75 (126)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555666677788887777664 568887765
No 42
>PRK11415 hypothetical protein; Provisional
Probab=54.41 E-value=30 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
|..||++|..||....
T Consensus 26 h~~Ld~~I~~lE~~~~ 41 (74)
T PRK11415 26 HNKLDHEIARKEGSDG 41 (74)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 7899999999999754
No 43
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.37 E-value=64 Score=21.07 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhh
Q 035144 46 HQSLDRRISTLET 58 (72)
Q Consensus 46 y~aL~~RIsaLE~ 58 (72)
++.|.++|..|.+
T Consensus 50 n~~L~~eI~~L~~ 62 (105)
T PRK00888 50 NDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHhhC
Confidence 6677777776654
No 44
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=49.95 E-value=16 Score=20.71 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
|..||++|..+|+...
T Consensus 8 h~~Ld~~I~~~e~~~~ 23 (49)
T PF04325_consen 8 HHELDKEIHRLEKRPE 23 (49)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCCC
Confidence 7789999999999854
No 45
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=49.91 E-value=18 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 035144 32 KLAHESISQQVKSLHQSLDRRISTLETLKHD 62 (72)
Q Consensus 32 ~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~ 62 (72)
...|+.|-+.+++ ++..|..||..++.
T Consensus 11 qe~~d~IEqkied----id~qIaeLe~KR~~ 37 (46)
T PF08946_consen 11 QEHYDNIEQKIED----IDEQIAELEAKRQR 37 (46)
T ss_dssp ----THHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHH----HHHHHHHHHHHHHH
Confidence 3568889999984 58889999876543
No 46
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=49.67 E-value=20 Score=25.20 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 19 ASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 19 As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
.++..||++-|=.|.-|..-.+.=+.||+++++=+.++.+.
T Consensus 58 ~Ga~aM~~isk~lkk~~~i~~D~r~~L~~a~~~w~~~~~~~ 98 (149)
T cd03197 58 VGAAAMYLISKYLKKPRLLQDDVREWLYDALNTWVAALGKD 98 (149)
T ss_pred hhHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHhcCC
Confidence 44567899988877777765667788999999999988764
No 47
>PRK00846 hypothetical protein; Provisional
Probab=48.80 E-value=15 Score=23.63 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=3.0
Q ss_pred HHHHHHhh
Q 035144 50 DRRISTLE 57 (72)
Q Consensus 50 ~~RIsaLE 57 (72)
+.||..||
T Consensus 12 e~Ri~~LE 19 (77)
T PRK00846 12 EARLVELE 19 (77)
T ss_pred HHHHHHHH
Confidence 33333333
No 48
>PRK06281 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=48.57 E-value=39 Score=23.84 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESIS 39 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia 39 (72)
.|-.|+..|+++.+|.+--+++..++.+.
T Consensus 34 GFqGGvi~asa~iL~~la~g~~~~~~~~~ 62 (154)
T PRK06281 34 GFQGGAMIAAGFILCIVVYGLEKSPFNFS 62 (154)
T ss_pred cHHHHHHHHHHHHHHHHHcChHHHHHHcC
Confidence 58899999999999999999887765544
No 49
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.54 E-value=38 Score=28.95 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccchhhc
Q 035144 31 YKLAHESISQQVKSLHQSLDRRISTLETLKHDETSQHVEAT 71 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~~~~~~~~~ 71 (72)
-|..--++.|.+++--..+..||.-||+++++-.-.+++.|
T Consensus 70 ~W~dAcaliQklkes~~~vr~Rl~vL~kqkqsid~~~~q~t 110 (560)
T KOG2709|consen 70 MWKDACALIQKLKESKSSVRHRLNVLKKQKQSIDEGPKQPT 110 (560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccccC
Confidence 35666778888888888999999999999998766666654
No 50
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=46.11 E-value=1.1e+02 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 035144 8 RLASFFTGAATASALGLYILHNDYKLAHESISQ 40 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~ 40 (72)
=+..||.|+...+++++|.+-.-+|..=+++..
T Consensus 234 P~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i 266 (304)
T PRK03449 234 PLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYV 266 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999987666544
No 51
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.78 E-value=68 Score=21.72 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHH---HHHHHH---HHHHHHHHHHhhh
Q 035144 27 LHNDYKLAHESIS---QQVKSL---HQSLDRRISTLET 58 (72)
Q Consensus 27 L~kD~~~ah~~ia---~qv~~l---y~aL~~RIsaLE~ 58 (72)
|.++++..-+.|. +++.+| ++.|+|||+.|-.
T Consensus 31 L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 31 LKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555444443 334555 8999999988743
No 52
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=43.09 E-value=8 Score=25.34 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 6 RVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 6 rvRlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
|-|..=++.|+.+..++..++++.-....++....+.... +..+...+..++..+
T Consensus 14 REr~ll~~~~~~l~~~l~~~~~~~P~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ 71 (160)
T PF04612_consen 14 RERRLLLVLGVVLLLALLYLLLWQPLLERRDQLQQQLQQLQQQLAWLQQQAQQIQALQ 71 (160)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556777778888888888888888888887777655 444555444444443
No 53
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=43.00 E-value=61 Score=18.18 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 14 TGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 14 ~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.||..+-.--+.-++.+-.........-++.-.+.+++||..|+...
T Consensus 13 lGfsL~eI~~~l~l~~~~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQGDPPCADRRALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp TT--HHHHHHHHHHCCSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665555555555444222222222223333557888888887653
No 54
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=42.45 E-value=1.2e+02 Score=21.40 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=10.2
Q ss_pred HHHHHHHHhHHHHHHHHHh
Q 035144 12 FFTGAATASALGLYILHND 30 (72)
Q Consensus 12 Ff~GaA~As~~G~y~L~kD 30 (72)
.++|+.+|.++|+++..+-
T Consensus 6 ~i~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555665555444
No 55
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=42.22 E-value=50 Score=24.99 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 31 YKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
|.++-..|-++.. -+.++.||+.||.+
T Consensus 44 Y~laQ~vlvQE~A--L~~a~~ri~eLe~q 70 (247)
T PF09849_consen 44 YYLAQTVLVQEQA--LKQAQARIQELEAQ 70 (247)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3444444444432 46889999999998
No 56
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.06 E-value=59 Score=23.67 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcccC
Q 035144 25 YILHNDYKLAHESISQQVKSL----HQSLDRRISTLETLKHDE 63 (72)
Q Consensus 25 y~L~kD~~~ah~~ia~qv~~l----y~aL~~RIsaLE~~~~~~ 63 (72)
+-.+.|+-.|++.+=..-+.+ +..|.+||+..|+.-++-
T Consensus 122 Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l 164 (246)
T cd07597 122 LKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESL 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 345677777777666644433 788999998877755443
No 57
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=41.74 E-value=33 Score=19.38 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHH
Q 035144 12 FFTGAATASALGLYILHNDYK 32 (72)
Q Consensus 12 Ff~GaA~As~~G~y~L~kD~~ 32 (72)
...|...+-++|+|.++|.+|
T Consensus 35 ~~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 35 TLIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 456777788888888888764
No 58
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=41.38 E-value=32 Score=23.30 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=17.1
Q ss_pred hhhhHHHHH--HHHHHHHHhHHHHHHHHHhHHH
Q 035144 3 YVLRVRLAS--FFTGAATASALGLYILHNDYKL 33 (72)
Q Consensus 3 ~mlrvRlaS--Ff~GaA~As~~G~y~L~kD~~~ 33 (72)
+|+|.|+++ |-+|+-+++. .|+-+||+|.
T Consensus 61 ~lmr~RVaAQgftV~AL~~G~--~~~~~~e~~~ 91 (100)
T KOG4431|consen 61 HLMRTRVAAQGFTVGALVLGL--AYTMYKEYPA 91 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhhccchhh
Confidence 577888875 3344443332 3447888875
No 59
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=40.92 E-value=51 Score=20.46 Aligned_cols=19 Identities=16% Similarity=0.384 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 035144 42 VKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 42 v~~ly~aL~~RIsaLE~~~ 60 (72)
++++.+.|..||.+|-...
T Consensus 27 ~~~~~~~~~~Rl~ALa~a~ 45 (83)
T PF07536_consen 27 VEEFAEAFSGRLQALARAH 45 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677899999999997644
No 60
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.71 E-value=69 Score=18.14 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=14.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhh
Q 035144 36 ESISQQVKSL---HQSLDRRISTLET 58 (72)
Q Consensus 36 ~~ia~qv~~l---y~aL~~RIsaLE~ 58 (72)
+.+..++..| +..|...|..|+.
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445444 6777777777764
No 61
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=39.69 E-value=75 Score=22.25 Aligned_cols=31 Identities=16% Similarity=0.446 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 035144 26 ILHNDYKLAHESISQQVKSL------HQSLDRRISTL 56 (72)
Q Consensus 26 ~L~kD~~~ah~~ia~qv~~l------y~aL~~RIsaL 56 (72)
-..||...|.+-+..|++.+ |+.||+.-+.|
T Consensus 82 emkkdleaankrve~q~ekiflmekkfe~lekkyesl 118 (122)
T PF05325_consen 82 EMKKDLEAANKRVESQAEKIFLMEKKFETLEKKYESL 118 (122)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 46799999999999999887 44555444433
No 62
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=38.70 E-value=52 Score=19.64 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 035144 37 SISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 37 ~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
++-+||+ +|+.++..|+..
T Consensus 3 aLrqQv~----aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 3 ALRQQVE----ALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHH
Confidence 5667888 778888888763
No 63
>COG3619 Predicted membrane protein [Function unknown]
Probab=38.39 E-value=51 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 035144 8 RLASFFTGAATASALGLYILHNDYKLAHESI 38 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~~ah~~i 38 (72)
=+.||++|+.+++.++.++-.+-.|..---+
T Consensus 177 ~il~f~~GAi~g~ll~~~~g~~al~~~~~~i 207 (226)
T COG3619 177 LILSFIVGAICGALLTLFFGLKALWVVAALI 207 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3679999999999999999988888875433
No 64
>PF15313 HEXIM: Hexamethylene bis-acetamide-inducible protein; PDB: 2GD7_B 3S9G_A.
Probab=38.07 E-value=46 Score=22.93 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhh
Q 035144 46 HQSLDRRISTLE 57 (72)
Q Consensus 46 y~aL~~RIsaLE 57 (72)
|-.||+|++.||
T Consensus 113 yl~LEk~~~~lE 124 (124)
T PF15313_consen 113 YLELEKKLSRLE 124 (124)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 558999999998
No 65
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=37.34 E-value=32 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHHHHHHHHH--hHHHHHHHHHhHH
Q 035144 9 LASFFTGAATA--SALGLYILHNDYK 32 (72)
Q Consensus 9 laSFf~GaA~A--s~~G~y~L~kD~~ 32 (72)
.+||+-|.-.. --+.+|||||=||
T Consensus 160 ~~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 46888887554 3456899998776
No 66
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.12 E-value=4.9 Score=33.34 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 035144 9 LASFFTGAATASALGLYILHNDYKLAHESISQ 40 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~L~kD~~~ah~~ia~ 40 (72)
+.+-.+|+|++.+.++|+.--|.+.+++....
T Consensus 16 ~~~~~~g~~a~~~g~~~~~~~~~~~~~~~~~~ 47 (475)
T PRK13729 16 LGIVVVGAAAAIGGALYLSDVDMSGNGEAVAE 47 (475)
T ss_pred HHHHHHHHHHhhhceEEEeccccccccccccc
Confidence 56677789999999999999888888855533
No 67
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=36.31 E-value=1.1e+02 Score=23.86 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHH
Q 035144 13 FTGAATASALGLYILHNDYKLAHESI 38 (72)
Q Consensus 13 f~GaA~As~~G~y~L~kD~~~ah~~i 38 (72)
-.|+..-++.++|-+|.--+.||+.-
T Consensus 25 p~Gl~ml~AgA~Y~~yQ~~EQAr~~A 50 (301)
T PF06120_consen 25 PPGLVMLGAGAWYYFYQNAEQARQEA 50 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777788999998888888753
No 68
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=36.18 E-value=1.8e+02 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 035144 18 TASALGLYILHNDYKLAHESISQQVKSLHQSLDRR 52 (72)
Q Consensus 18 ~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~R 52 (72)
..-+..+|.|+.++.+-...+..+..+++++|.++
T Consensus 11 ~il~lvl~~l~~~Ir~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 11 FILALVLYLLRAYIRSLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999998889988888888888777
No 69
>PRK08387 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=36.08 E-value=51 Score=22.54 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESISQ 40 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia~ 40 (72)
.|-+|...|+++.++.|-.+++..++.+..
T Consensus 34 GF~gGli~a~a~~L~~la~g~~~~~~~~~~ 63 (131)
T PRK08387 34 GFQAGVILAVAVILLITSHGYKKVRKRFRK 63 (131)
T ss_pred hHHHHHHHHHHHHHHHHHcChHHHHHHcCc
Confidence 588999999999999999998877765544
No 70
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=36.03 E-value=2e+02 Score=22.19 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhHHH--HHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 8 RLASFFTGAATASALG--LYILHNDYKLAHE----SISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 8 RlaSFf~GaA~As~~G--~y~L~kD~~~ah~----~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
|-+....|+.++-+++ .|+|-||-+.=|+ ..+.+.+..=.-||+.+..|+...
T Consensus 252 k~ari~~~a~ag~fL~lDv~~Lvkdsk~L~eGakse~Ae~LR~~A~eLE~~L~el~~~~ 310 (313)
T PF05461_consen 252 KGARIAGGALAGLFLGLDVYFLVKDSKHLHEGAKSESAEELREQAQELEEKLEELTQIY 310 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444 4788888888776 344444444457788777776644
No 71
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.64 E-value=1.2e+02 Score=21.16 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHhhh
Q 035144 31 YKLAHESISQQVKSL--HQSLDRRISTLET 58 (72)
Q Consensus 31 ~~~ah~~ia~qv~~l--y~aL~~RIsaLE~ 58 (72)
.-.+-+.|...++.+ |..+.+||..|+.
T Consensus 7 L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~ 36 (188)
T PF10018_consen 7 LIEADDELSSALEELQEHQENQARIQQLRA 36 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444 4444455544443
No 72
>COG3297 PulL Type II secretory pathway, component PulL [Intracellular trafficking and secretion]
Probab=35.60 E-value=1.9e+02 Score=23.87 Aligned_cols=46 Identities=26% Similarity=0.196 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHH-hHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 035144 3 YVLRVRLASFFTGAATA-SALGLYILHNDYKLAHESISQQVKSLHQSL 49 (72)
Q Consensus 3 ~mlrvRlaSFf~GaA~A-s~~G~y~L~kD~~~ah~~ia~qv~~ly~aL 49 (72)
+-.|-|.+|-++|.-.. +..++|.+|++.+.+ ++++.|.+++|.+|
T Consensus 238 ~w~~wR~~~~~~ll~Lv~~~~~~~q~w~~~~~~-dal~~qaqe~~~~l 284 (390)
T COG3297 238 QWVRWRVASLLALLFLVMSLNRLVQLWHIQRQA-DALRAQAQELYRSL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 34577999999987554 556789999998887 46677777776655
No 73
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.10 E-value=51 Score=23.33 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKL 33 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ 33 (72)
.+.+|.+++++ -+|-+|=|||-
T Consensus 10 ~~~ag~a~~~f-lgYciYFD~KR 31 (148)
T TIGR00985 10 VIAAGIAAAAF-LGYAIYFDYKR 31 (148)
T ss_pred HHHHHHHHHHH-HHHHHhhhhhh
Confidence 34556554444 45888888874
No 74
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.93 E-value=30 Score=22.35 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhh
Q 035144 48 SLDRRISTLETL 59 (72)
Q Consensus 48 aL~~RIsaLE~~ 59 (72)
.||+||..||.+
T Consensus 5 ~lE~Ri~eLE~r 16 (72)
T COG2900 5 ELEARIIELEIR 16 (72)
T ss_pred hHHHHHHHHHHH
Confidence 689999999975
No 75
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.87 E-value=96 Score=17.75 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHh
Q 035144 32 KLAHESISQQVKSL---HQSLDRRISTL 56 (72)
Q Consensus 32 ~~ah~~ia~qv~~l---y~aL~~RIsaL 56 (72)
..-...+..+.+.+ ++.|+++|+.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444433 55566666555
No 76
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=33.73 E-value=88 Score=19.60 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHH
Q 035144 10 ASFFTGAATASALGLYILHNDYKLA 34 (72)
Q Consensus 10 aSFf~GaA~As~~G~y~L~kD~~~a 34 (72)
..|++|++.+-+++-+.+.|..+..
T Consensus 5 lali~G~~~Gff~ar~~~~k~l~~N 29 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEKQLKEN 29 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4567777776666666666666544
No 77
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.55 E-value=23 Score=22.72 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035144 22 LGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 22 ~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~ 58 (72)
++.|++-++...|.+.+....+ .|++++..|++
T Consensus 76 G~g~~vE~~~~eA~~~l~~r~~----~l~~~~~~l~~ 108 (129)
T cd00584 76 GTGYYVEKDLEEAIEFLDKKIE----ELTKQIEKLQK 108 (129)
T ss_pred CCCEEEEecHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4567788888888888888777 44444444443
No 78
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=33.46 E-value=1.4e+02 Score=21.66 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcc
Q 035144 26 ILHNDYKLAHESISQQVK-SLHQSLDRRISTLETLKH 61 (72)
Q Consensus 26 ~L~kD~~~ah~~ia~qv~-~ly~aL~~RIsaLE~~~~ 61 (72)
+|-.....+...+..+.+ ..-+.|++....||..|+
T Consensus 165 vl~~~q~~a~~~l~~~le~~~~~~Le~~~~~l~~ek~ 201 (219)
T PF07701_consen 165 VLLGQQQSAELKLAKQLEQEKSAELEESMRELEEEKK 201 (219)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777788888 888899999999998765
No 79
>PHA02414 hypothetical protein
Probab=33.29 E-value=1e+02 Score=21.43 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhcccCccc
Q 035144 47 QSLDRRISTLETLKHDETSQ 66 (72)
Q Consensus 47 ~aL~~RIsaLE~~~~~~~~~ 66 (72)
..||+.|++|+...+.+...
T Consensus 67 ~~Lee~i~aL~~~n~ked~~ 86 (111)
T PHA02414 67 ERLEEKISALAESNKKEDTE 86 (111)
T ss_pred HHHHHHHHHHHhccccccch
Confidence 37899999999988777554
No 80
>PF14006 YqzL: YqzL-like protein
Probab=33.17 E-value=31 Score=20.60 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHhHHHHHH
Q 035144 16 AATASALGLYILHNDYKLAHE 36 (72)
Q Consensus 16 aA~As~~G~y~L~kD~~~ah~ 36 (72)
|+..+=+..|+|||++...++
T Consensus 7 F~~TG~i~aYllyke~E~~~~ 27 (47)
T PF14006_consen 7 FEQTGSIDAYLLYKELEEESE 27 (47)
T ss_pred hhhcCCHHHHHHHHHHHhhcc
Confidence 455667889999999776664
No 81
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=32.69 E-value=24 Score=24.44 Aligned_cols=12 Identities=50% Similarity=0.745 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhh
Q 035144 47 QSLDRRISTLET 58 (72)
Q Consensus 47 ~aL~~RIsaLE~ 58 (72)
++|++||+.||=
T Consensus 2 ~sle~rIekLEY 13 (113)
T PF08963_consen 2 ESLEQRIEKLEY 13 (113)
T ss_dssp -THHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 478999999984
No 82
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=32.45 E-value=38 Score=19.17 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhc
Q 035144 46 HQSLDRRISTLETLK 60 (72)
Q Consensus 46 y~aL~~RIsaLE~~~ 60 (72)
+.++.++|..||..=
T Consensus 27 ~~~vs~~i~~LE~~l 41 (60)
T PF00126_consen 27 QSAVSRQIKQLEEEL 41 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 778899999999753
No 83
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=32.10 E-value=53 Score=20.97 Aligned_cols=26 Identities=31% Similarity=0.221 Sum_probs=18.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 35 HESISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 35 h~~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
|.+++.-.+.+ +.++.++|..||..=
T Consensus 16 ~gSis~AA~~L~iS~stvs~~I~~LE~~l 44 (99)
T TIGR00637 16 MGSISQAAKDAGISYKSAWDYIRAMNNLS 44 (99)
T ss_pred hCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 44555555655 889999999999853
No 84
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=32.08 E-value=1.2e+02 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhcccCccc
Q 035144 46 HQSLDRRISTLETLKHDETSQ 66 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~~~~~ 66 (72)
|.+|-|.|..|-.+...|.+|
T Consensus 168 fs~L~K~i~~l~~l~~~Gk~~ 188 (200)
T PF03286_consen 168 FSSLSKAIEELKDLANGGKEP 188 (200)
T ss_pred HHHHHHHHHHHHHHHhcCccc
Confidence 888888888888887777764
No 85
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=31.98 E-value=87 Score=21.45 Aligned_cols=22 Identities=27% Similarity=0.227 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHh
Q 035144 9 LASFFTGAATASALGLYILHND 30 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~L~kD 30 (72)
+.||+.|+.+++.+.-++=..-
T Consensus 172 i~~f~~Ga~~ga~l~~~~~~~a 193 (209)
T PF06912_consen 172 ILSFFIGAILGALLYRRLGFWA 193 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 5789999988877665544333
No 86
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=31.77 E-value=1.2e+02 Score=18.91 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 28 HNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 28 ~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
.+=+-.....=.+++.++++-||+=|+=|||.
T Consensus 27 IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK~ 58 (58)
T PF13314_consen 27 IRRILINSNAKKQDVDSMEQKLDRIIELLEKD 58 (58)
T ss_pred HHHHHHhccccccchhHHHHHHHHHHHHHccC
Confidence 44444433334444556788999999999974
No 87
>PF14448 Nuc_N: Nuclease N terminal
Probab=31.70 E-value=56 Score=20.55 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 31 YKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
++-+|++-- .++..||+.||+-
T Consensus 32 ~qeaHdaSK-------asiQsrIsnlEsg 53 (60)
T PF14448_consen 32 FQEAHDASK-------ASIQSRISNLESG 53 (60)
T ss_pred hhhhhhhhH-------HHHHHHHhhhhcc
Confidence 456666533 2566899999984
No 88
>smart00555 GIT Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins. Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins, and in yeast Spa2p and Sph1p (CPP; unpublished results). In p95-APP1 the N-terminal GIT motif might be involved in binding PIX.
Probab=31.58 E-value=71 Score=17.15 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035144 33 LAHESISQQVKSLHQSLDRRIS 54 (72)
Q Consensus 33 ~ah~~ia~qv~~ly~aL~~RIs 54 (72)
+++....+-+.|+|+-|++|+.
T Consensus 8 L~~~~F~~L~~Dv~~El~RR~~ 29 (31)
T smart00555 8 LSDEQFQKLLTDLNDELKRREN 29 (31)
T ss_pred cCHHHHHHHHHHHHHHHHHhhc
Confidence 4566777778899999999974
No 89
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=31.16 E-value=44 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHH
Q 035144 8 RLASFFTGAATASALGLYILHNDYK 32 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~ 32 (72)
|..||| |++++.++..|+|++.++
T Consensus 45 kklS~~-~v~~c~~lnaY~l~~eH~ 68 (102)
T PLN02595 45 EKITYL-GIASCTALAVYVLSKGHH 68 (102)
T ss_pred hhhhHH-HhHHHHHHHHHHhhhccc
Confidence 456777 466666678999988765
No 90
>PRK11677 hypothetical protein; Provisional
Probab=31.04 E-value=1.5e+02 Score=20.61 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
-.++|+.++.++|+++..- .... . .+-+.+.+.||+-=..||..+
T Consensus 5 ~a~i~livG~iiG~~~~R~---~~~~-~-~~q~~le~eLe~~k~ele~Yk 49 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRF---GNRK-L-RQQQALQYELEKNKAELEEYR 49 (134)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccch-h-hHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888777653 1111 1 222444445555555565544
No 91
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=30.65 E-value=55 Score=27.71 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144 33 LAHESISQQVKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 33 ~ah~~ia~qv~~ly~aL~~RIsaLE~~~~ 61 (72)
.|.+-+++||. +...||..||..|+
T Consensus 302 es~e~L~qqV~----qs~EKIa~LEqEKE 326 (518)
T PF10212_consen 302 ESREGLAQQVQ----QSQEKIAKLEQEKE 326 (518)
T ss_pred HhHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 45677888887 56778888887664
No 92
>PF11053 DNA_Packaging: Terminase DNA packaging enzyme; InterPro: IPR020342 This entry represents the DNA-packaging protein Gp16 found in Enterobacteria phage T4 (Bacteriophage T4). Double-stranded DNA packaging in bacteriophages is driven by a molecular motor. The phage T4 motor is composed of the small terminase protein, Gpl6 (18kDa), the large terminase protein, Gp17 (70kDa), and the dodecameric portal protein Gp20 (61kDa). Gp16 is involved in the recognition of the viral DNA substrate, the very first step in the DNA packaging pathway, and stimulates the ATPase and packaging activities associated with Gp17 []. Gp16 modulates the activity of Gp17 [] and is required to translocate phage T4 DNA into the head []. ; PDB: 3TXS_D 3TXQ_I.
Probab=30.25 E-value=94 Score=22.51 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=28.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccchhh
Q 035144 27 LHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDETSQHVEA 70 (72)
Q Consensus 27 L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~~~~~~~~ 70 (72)
+-+||+.+++.+-.|.+-+.++.+. +||-.+.++.+-..++
T Consensus 47 ~e~DY~~~R~nlh~q~q~~~~a~~~---aLe~Ak~SesPRa~EV 87 (153)
T PF11053_consen 47 LEDDYEYVRDNLHFQQQMGQDAAKI---ALEVAKNSESPRAYEV 87 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccCCchHHHH
Confidence 4689999999998888766555442 6777777777665543
No 93
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.69 E-value=1.3e+02 Score=19.81 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhccc
Q 035144 46 HQSLDRRISTLETLKHD 62 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~ 62 (72)
|+.++++..+|++..++
T Consensus 99 y~~~~~~~~~L~rl~~t 115 (132)
T PF10392_consen 99 YEKIQKLTSQLERLHQT 115 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888876543
No 94
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=29.46 E-value=90 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 035144 39 SQQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 39 a~qv~~ly~aL~~RIsaLE~ 58 (72)
+..|++-...+++||+.||.
T Consensus 16 ~~~cE~kL~~~e~~Lq~~E~ 35 (148)
T PF10152_consen 16 ASVCEEKLSDMEQRLQRLEA 35 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455445555555555553
No 95
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=28.61 E-value=34 Score=23.05 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+-.|.+|-..+...|+.+++===.+.-+||.+||+..
T Consensus 20 L~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~G 56 (164)
T PRK11169 20 LNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQG 56 (164)
T ss_pred HHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4578888888899999887433458889999999864
No 96
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=28.56 E-value=2e+02 Score=19.82 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035144 31 YKLAHESISQQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIsaLE~ 58 (72)
.-..|.+-.+..+++++++..+|..||.
T Consensus 98 ~i~~~~~~I~~Lq~~~~~~~~ki~~Le~ 125 (146)
T PF08702_consen 98 KIINQPSNIRVLQNILRSNRQKIQRLEQ 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556667778888888888886
No 97
>PF15324 TALPID3: Hedgehog signalling target
Probab=28.52 E-value=1.5e+02 Score=27.88 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
+--++.||..||+..+
T Consensus 134 n~fmeQ~l~HLEKLQq 149 (1252)
T PF15324_consen 134 NVFMEQHLRHLEKLQQ 149 (1252)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5567899999999874
No 98
>PRK11059 regulatory protein CsrD; Provisional
Probab=28.19 E-value=3.2e+02 Score=21.97 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=32.0
Q ss_pred hhhhHHHHHHHH-HHHHHhH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 035144 3 YVLRVRLASFFT-GAATASA----LGLYILHNDYKLAHESISQQVKSLHQSLDRRI 53 (72)
Q Consensus 3 ~mlrvRlaSFf~-GaA~As~----~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RI 53 (72)
-+||.++.+|++ -.+.|++ +|++-+ ++.+++.+..++..+-..+|..+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~l~~~i~~~~ 57 (640)
T PRK11059 5 MRLTTKLSAFVTLLVALAMFVTLLGCTLSF---YQLTQEKQQHRVQALATAIDQHL 57 (640)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 368889998886 3333322 344555 55788888888888766666664
No 99
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=28.01 E-value=53 Score=20.48 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhc
Q 035144 46 HQSLDRRISTLETLK 60 (72)
Q Consensus 46 y~aL~~RIsaLE~~~ 60 (72)
|..|..||..|+..-
T Consensus 38 Y~eL~~ri~~lr~~l 52 (71)
T PF08663_consen 38 YQELEDRIEELRAEL 52 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
No 100
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=27.88 E-value=1.3e+02 Score=17.47 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 31 YKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.+.--+.+..++..++..+.++|..|+...
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445566666777889999999999883
No 101
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.63 E-value=48 Score=20.02 Aligned_cols=10 Identities=50% Similarity=0.763 Sum_probs=4.6
Q ss_pred HHHHHHHhhh
Q 035144 49 LDRRISTLET 58 (72)
Q Consensus 49 L~~RIsaLE~ 58 (72)
++.||..||.
T Consensus 2 le~Ri~~LE~ 11 (69)
T PF04102_consen 2 LEERIEELEI 11 (69)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 102
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=27.56 E-value=66 Score=21.03 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHhHHH
Q 035144 17 ATASALGLYILHNDYKL 33 (72)
Q Consensus 17 A~As~~G~y~L~kD~~~ 33 (72)
.--+++|.|++|+|=|.
T Consensus 52 ~G~~Fi~GfI~~RDRKr 68 (77)
T PF11118_consen 52 IGVGFIAGFILHRDRKR 68 (77)
T ss_pred HHHHHHHhHhheeeccc
Confidence 33468999999999764
No 103
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=27.46 E-value=59 Score=20.18 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 035144 7 VRLASFFTGAATASALGLYILH 28 (72)
Q Consensus 7 vRlaSFf~GaA~As~~G~y~L~ 28 (72)
-|.+-||.||..+-++.+|-++
T Consensus 5 ~r~~~~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 5 WRYALFVGGFVGLIGAALYPIY 26 (58)
T ss_pred ccchhhHHHHHHHHHHHHhhhh
Confidence 4778899999999999999765
No 104
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.45 E-value=47 Score=20.47 Aligned_cols=11 Identities=45% Similarity=0.785 Sum_probs=6.9
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
.++.||..||.
T Consensus 5 ~~e~Ri~~LE~ 15 (72)
T PRK02793 5 SLEARLAELES 15 (72)
T ss_pred hHHHHHHHHHH
Confidence 36666666665
No 105
>PF14270 DUF4358: Domain of unknown function (DUF4358)
Probab=27.33 E-value=69 Score=20.14 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhhccc
Q 035144 41 QVKSLHQSLDRRISTLETLKHD 62 (72)
Q Consensus 41 qv~~ly~aL~~RIsaLE~~~~~ 62 (72)
+++.+-++|++||..+++.-..
T Consensus 58 ~~e~Vk~~l~~r~~~q~~~f~~ 79 (106)
T PF14270_consen 58 QAEDVKKALEKRLESQKKSFEG 79 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778999999998876433
No 106
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.31 E-value=1.4e+02 Score=25.11 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhhcc
Q 035144 48 SLDRRISTLETLKH 61 (72)
Q Consensus 48 aL~~RIsaLE~~~~ 61 (72)
+|+|+|++||++..
T Consensus 35 ~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 35 ALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHhhc
Confidence 67777777777643
No 107
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.97 E-value=1.3e+02 Score=24.06 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 035144 36 ESISQQVKSLHQSLDRRISTLETLKHDE 63 (72)
Q Consensus 36 ~~ia~qv~~ly~aL~~RIsaLE~~~~~~ 63 (72)
-+++.++. .|++||.+||+...+.
T Consensus 136 St~aL~It----dLe~RV~~LEs~~s~~ 159 (326)
T PF04582_consen 136 STQALNIT----DLESRVKALESGSSSP 159 (326)
T ss_dssp HHHHHHHH----HHHHHHHHHHTTTTTT
T ss_pred hhhcchHh----hHHHHHHHHhcCCCCC
Confidence 34445555 7899999999976654
No 108
>PF10570 Myelin-PO_C: Myelin-PO cytoplasmic C-term p65 binding region; InterPro: IPR019566 The myelin sheath is a multi-layered membrane, unique to the nervous system, that functions as an insulator to greatly increase the velocity of axonal impulse conduction. The P0 glycoprotein, absent in the central nervous system [], is a major component of the myelin sheath in peripheral nerves. It comprises a large extracellular N-terminal domain, a single transmembrane (TM) region, and a smaller positively charged intracellular domain. It is postulated that P0 is a structural element in the formation and stabilisation of peripheral nerve myelin [], holding its characteristic coil structure together by the interaction of its positively-charged domain with acidic lipids in the cytoplasmic face of the opposed bilayer, and by interaction between hydrophobic globular `heads' of adjacent extracellular domains []. This entry is the extracellular domain found at the C-terminal end of myelin-PO.
Probab=26.87 E-value=53 Score=21.26 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhcccCcccc
Q 035144 48 SLDRRISTLETLKHDETSQH 67 (72)
Q Consensus 48 aL~~RIsaLE~~~~~~~~~~ 67 (72)
.|.+|||++|+-|-....++
T Consensus 11 ~lqR~lS~~EkGKl~k~~k~ 30 (70)
T PF10570_consen 11 FLQRRLSAMEKGKLHKSGKD 30 (70)
T ss_pred HHHHhhhHHhcccccCCccc
Confidence 68999999999765544443
No 109
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=26.76 E-value=1e+02 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHH
Q 035144 9 LASFFTGAATASALGLYILHNDYK 32 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~L~kD~~ 32 (72)
+..++.|+.++-++|.|++-+-+|
T Consensus 121 i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888888999999988776
No 110
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.62 E-value=1.3e+02 Score=21.93 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLE 57 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE 57 (72)
-..++.+.....+-+.+||......|+..|..|+
T Consensus 100 s~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~ 133 (171)
T PF04799_consen 100 SHQVQQELSSTFARLCQQVDQTKNELEDEIKQLE 133 (171)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666555444444444443
No 111
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=26.61 E-value=1.8e+02 Score=20.66 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhhhcccC
Q 035144 43 KSLHQSLDRRISTLETLKHDE 63 (72)
Q Consensus 43 ~~ly~aL~~RIsaLE~~~~~~ 63 (72)
...-..+++||+.||....++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~G 39 (186)
T cd03777 19 DIRLADMDLRFQVLETASYNG 39 (186)
T ss_pred HHHHHHHHHHHHHhhccccce
Confidence 334568899999999766554
No 112
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=26.53 E-value=96 Score=18.07 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHH
Q 035144 8 RLASFFTGAATASALGLYILHNDYK 32 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~ 32 (72)
=+.+||+++-.-++.-+.=| +|||
T Consensus 18 gl~~~f~~~L~p~gWVLshL-~~YK 41 (43)
T cd00930 18 GLSVFFTTFLLPAGWVLSHL-ENYK 41 (43)
T ss_pred HHHHHHHHHHhhHHHHHHHH-HHhc
Confidence 36788888887776555443 4555
No 113
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.23 E-value=1.6e+02 Score=23.35 Aligned_cols=23 Identities=22% Similarity=0.353 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 035144 28 HNDYKLAHESISQQVKSLHQSLD 50 (72)
Q Consensus 28 ~kD~~~ah~~ia~qv~~ly~aL~ 50 (72)
+++.+..|....++.+++.+..+
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~ 35 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQD 35 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777766644333
No 114
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=25.97 E-value=65 Score=20.52 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 23 GLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 23 G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.+..|.+|-..+-..|+.+++===.+.-+||..||+..
T Consensus 13 IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~G 50 (154)
T COG1522 13 ILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEG 50 (154)
T ss_pred HHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 46678888888888888876422457889999999753
No 115
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.80 E-value=57 Score=25.09 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhccc
Q 035144 47 QSLDRRISTLETLKHD 62 (72)
Q Consensus 47 ~aL~~RIsaLE~~~~~ 62 (72)
..||+||..||+.=+.
T Consensus 212 a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 212 ADLEKRLARLESALGI 227 (388)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4899999999998877
No 116
>PF06736 DUF1211: Protein of unknown function (DUF1211); InterPro: IPR010617 This family represents a conserved region within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. These may possibly be integral membrane proteins.
Probab=25.66 E-value=1.7e+02 Score=18.07 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035144 18 TASALGLYILHNDYKLAHESISQQVKSLHQSLDRRIS 54 (72)
Q Consensus 18 ~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIs 54 (72)
..+.+.-|++---+|.+|+.+-++++. .|+++.
T Consensus 46 l~~y~~SF~ii~~~W~~h~~~f~~i~~----~d~~~~ 78 (92)
T PF06736_consen 46 LLAYLLSFFIIAMFWYSHHRIFRHIKK----VDRRII 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----cCHHHH
Confidence 344555667778899999999999884 455543
No 117
>PRK02870 heat shock protein HtpX; Provisional
Probab=25.54 E-value=41 Score=26.16 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhc
Q 035144 46 HQSLDRRISTLETLK 60 (72)
Q Consensus 46 y~aL~~RIsaLE~~~ 60 (72)
|-.+|+||.+||..+
T Consensus 321 HPp~e~RI~rL~~~~ 335 (336)
T PRK02870 321 HPSIENRLAALGGKL 335 (336)
T ss_pred CCCHHHHHHHHhhcc
Confidence 445788999988765
No 118
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=25.49 E-value=94 Score=21.97 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHH
Q 035144 4 VLRVRLASFFTGAATASALGLYILH 28 (72)
Q Consensus 4 mlrvRlaSFf~GaA~As~~G~y~L~ 28 (72)
+-|+|+.+|..+.+.|+.+|..+-.
T Consensus 138 v~~~~~~af~is~~laglaG~l~a~ 162 (234)
T cd06580 138 VKRVRLLAMLISGALAGLAGAYLVL 162 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999998876543
No 119
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=25.01 E-value=50 Score=21.92 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+=.|.+|-..+...|+.+++-==.+.-+||.+||...
T Consensus 15 l~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 15 LEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3467888888899999887433558889999999754
No 120
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=25.00 E-value=1.9e+02 Score=18.45 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 035144 5 LRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHD 62 (72)
Q Consensus 5 lrvRlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~ 62 (72)
+|||.+++- .+|-+- |.+...+-....++|+.|.|.++-.+..-++
T Consensus 41 ~rVRy~AcE---------aL~ni~---k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~ 86 (97)
T PF12755_consen 41 SRVRYYACE---------ALYNIS---KVARGEILPYFNEIFDALCKLSADPDENVRS 86 (97)
T ss_pred HHHHHHHHH---------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCchhHHH
Confidence 477776543 345554 4455566667889999999988776654433
No 121
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=24.94 E-value=2e+02 Score=20.21 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhh
Q 035144 46 HQSLDRRISTLET 58 (72)
Q Consensus 46 y~aL~~RIsaLE~ 58 (72)
.+.+.+.+..||+
T Consensus 118 ~~~~~~~~~~l~k 130 (251)
T cd07653 118 QQKLESSIKQLEK 130 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 122
>PRK04406 hypothetical protein; Provisional
Probab=24.90 E-value=59 Score=20.33 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=6.3
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
.++.||..||.
T Consensus 8 ~le~Ri~~LE~ 18 (75)
T PRK04406 8 QLEERINDLEC 18 (75)
T ss_pred HHHHHHHHHHH
Confidence 45566666654
No 123
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.84 E-value=99 Score=21.35 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESI 38 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~i 38 (72)
.|-+|...|++..+|.|-.+++...+.+
T Consensus 37 GF~gGli~a~a~iL~~la~G~~~~~~~~ 64 (140)
T PRK12573 37 GFIGGLITASALVILLLAFDIKTVRRAL 64 (140)
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHc
Confidence 5889999999999999998888776554
No 124
>PRK02119 hypothetical protein; Provisional
Probab=24.73 E-value=59 Score=20.12 Aligned_cols=11 Identities=45% Similarity=0.745 Sum_probs=7.0
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
.++.||..||.
T Consensus 6 ~~e~Ri~~LE~ 16 (73)
T PRK02119 6 NLENRIAELEM 16 (73)
T ss_pred HHHHHHHHHHH
Confidence 46666666665
No 125
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=24.62 E-value=2.4e+02 Score=19.29 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTL 56 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaL 56 (72)
.|-+.+.+..-|+.+.++-+ -|.+||+.|
T Consensus 40 a~~F~~kV~~qH~~~~~e~r----~L~kKi~~l 68 (109)
T PF11690_consen 40 AYDFIDKVVDQHQRYCDERR----KLRKKIQDL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34455666677777766655 567777776
No 126
>PRK00736 hypothetical protein; Provisional
Probab=24.50 E-value=44 Score=20.39 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.7
Q ss_pred HHHHHHHhhh
Q 035144 49 LDRRISTLET 58 (72)
Q Consensus 49 L~~RIsaLE~ 58 (72)
++.||..||.
T Consensus 3 ~e~Ri~~LE~ 12 (68)
T PRK00736 3 AEERLTELEI 12 (68)
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 127
>PHA02047 phage lambda Rz1-like protein
Probab=24.46 E-value=2.4e+02 Score=19.34 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHhH-HHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 035144 6 RVRLASFFTGAATASA-LGLYIL-HNDYKLAHESISQQVKSLHQSLDRRIS 54 (72)
Q Consensus 6 rvRlaSFf~GaA~As~-~G~y~L-~kD~~~ah~~ia~qv~~ly~aL~~RIs 54 (72)
|-+++-.+.=+++|.+ .=+|+. |+=.-.+|+..-++...| ++++.||.
T Consensus 2 r~t~~~~~~~v~~~~g~~y~~~~~~r~~g~~h~~a~~la~qL-E~a~~r~~ 51 (101)
T PHA02047 2 RRTIVAILVLVVVALGASYGFVQSYRALGIAHEEAKRQTARL-EALEVRYA 51 (101)
T ss_pred chhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4455554444333322 114555 773335676665555444 23444443
No 128
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.39 E-value=1.1e+02 Score=20.96 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035144 29 NDYKLAHESISQQVKSLHQSLDRRISTL 56 (72)
Q Consensus 29 kD~~~ah~~ia~qv~~ly~aL~~RIsaL 56 (72)
|||+.+-+.+.. +.|+||+.+|
T Consensus 69 k~Ye~a~~~~~~------~~lqkRle~l 90 (104)
T PF11460_consen 69 KDYEEAVDQLTN------EELQKRLEEL 90 (104)
T ss_pred HHHHHHHHHHhH------HHHHHHHHhC
Confidence 555555544433 3688888776
No 129
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.26 E-value=2.1e+02 Score=20.42 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=25.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESISQQ 41 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia~q 41 (72)
.|-+|+-.|+++.+|.+--+++..++.+...
T Consensus 48 GFqgGlI~Aaa~iL~~la~G~~~~~~~l~~~ 78 (159)
T PRK12505 48 GFQGGVIVASVVLMLAFAFGIDATREWLDER 78 (159)
T ss_pred hHHHHHHHHHHHHHHHHHCCchHHHHHhhHH
Confidence 5889999999999999999988777655543
No 130
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=24.08 E-value=1.3e+02 Score=23.12 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHHHhHHH
Q 035144 13 FTGAATASALGLYILHNDYKL 33 (72)
Q Consensus 13 f~GaA~As~~G~y~L~kD~~~ 33 (72)
++.+++-..+|.++|+|..|.
T Consensus 21 ~~~~~il~~LGtWQl~Rl~wK 41 (252)
T COG3346 21 LATFAILLGLGTWQLQRLHWK 41 (252)
T ss_pred HHHHHHHHhhhhhhhhhHHHH
Confidence 345677778899999999986
No 131
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.70 E-value=2.2e+02 Score=22.10 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQ 47 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~ 47 (72)
=|..|+++|-++|-.+..++.+.+...+-+.+-.+|-
T Consensus 44 VflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~~lY~ 80 (358)
T PF10129_consen 44 VFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAWQLYV 80 (358)
T ss_pred hhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999999999999888877754
No 132
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.68 E-value=1.3e+02 Score=22.64 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhc
Q 035144 46 HQSLDRRISTLETLK 60 (72)
Q Consensus 46 y~aL~~RIsaLE~~~ 60 (72)
-+.|++||..||+.+
T Consensus 188 ~~rL~~RL~rLe~k~ 202 (204)
T COG3165 188 VERLEARLERLERKA 202 (204)
T ss_pred HHHHHHHHHHHHHhh
Confidence 678999999999753
No 133
>PRK12765 flagellar capping protein; Provisional
Probab=23.63 E-value=1.1e+02 Score=25.54 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=15.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 35 HESISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 35 h~~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
-+.+..+.++| ++++++||.++|.+
T Consensus 534 ~~~l~~~~~~l~~~~~~~~~rl~~~~~r 561 (595)
T PRK12765 534 DESLTNEIKSLTTSKESTQELIDTKYET 561 (595)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555 66777777777664
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=23.63 E-value=2.3e+02 Score=19.65 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 32 KLAHESISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 32 ~~ah~~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
..+++.+.++...| |..++.|+..||...
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 668899999888754
No 135
>PRK04325 hypothetical protein; Provisional
Probab=23.54 E-value=63 Score=20.01 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=5.8
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
+++.||..||.
T Consensus 6 ~~e~Ri~~LE~ 16 (74)
T PRK04325 6 EMEDRITELEI 16 (74)
T ss_pred hHHHHHHHHHH
Confidence 34555555554
No 136
>PHA02675 ORF104 fusion protein; Provisional
Probab=23.53 E-value=1.5e+02 Score=20.01 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144 33 LAHESISQQVKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 33 ~ah~~ia~qv~~ly~aL~~RIsaLE~~~~ 61 (72)
..|+.+...|+ -++.||..||.-.+
T Consensus 44 k~~~~i~~cC~----~~~~~L~RLE~H~E 68 (90)
T PHA02675 44 DSYKTITDCCR----ETGARLDRLERHLE 68 (90)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 44555556666 67788888886543
No 137
>PF15605 Toxin_52: Putative toxin 52
Probab=23.48 E-value=1.3e+02 Score=20.68 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hcccC
Q 035144 39 SQQVKSLHQSLDRRISTLET-LKHDE 63 (72)
Q Consensus 39 a~qv~~ly~aL~~RIsaLE~-~~~~~ 63 (72)
-++|.+-|..|.+++..||+ ++-+.
T Consensus 49 lqEm~da~~GL~n~~~~le~~L~np~ 74 (103)
T PF15605_consen 49 LQEMQDAYRGLVNRKRTLEGSLKNPN 74 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35677779999999999999 44443
No 138
>PRK12509 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=23.38 E-value=1.1e+02 Score=21.05 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESIS 39 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia 39 (72)
.|-+|..+|++..++.|-.+++..++.+.
T Consensus 35 GF~gGli~a~a~~L~~la~g~~~~~~~~~ 63 (137)
T PRK12509 35 GFIGGLVAAAAFALYLIANGIAAARRLLR 63 (137)
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHcC
Confidence 58899999999999999999887765543
No 139
>TIGR00943 2a6301s02 monovalent cation:proton antiporter. This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.This family is specific for the phaB and mnhB proteins.
Probab=22.99 E-value=1.3e+02 Score=19.92 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESIS 39 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia 39 (72)
.|-+|.-+|++..++.|--+++...+.+.
T Consensus 12 GF~gGli~a~a~iL~~la~g~~~~~~~~~ 40 (107)
T TIGR00943 12 GFVAGLLTASSLILITIAFGIETVRKILP 40 (107)
T ss_pred hHHHHHHHHHHHHHHHHHCCHHHHHHHcC
Confidence 58899999999999999999887765544
No 140
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=22.77 E-value=85 Score=20.07 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHHH------HhHHHHHHHHHHHHHHH
Q 035144 12 FFTGAATASALGLYILH------NDYKLAHESISQQVKSL 45 (72)
Q Consensus 12 Ff~GaA~As~~G~y~L~------kD~~~ah~~ia~qv~~l 45 (72)
|+.++++.+++|+++.- .|+..+-..++-|+..+
T Consensus 24 ~y~a~~aSa~iG~~i~~~rl~a~~~l~~~l~nlaI~igav 63 (75)
T PF11998_consen 24 FYGAFGASAGIGLFIFLFRLIAGPDLNEALPNLAIQIGAV 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccHHHHhhhHhHHHHHH
Confidence 44445555555655432 35555555555555433
No 141
>PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional
Probab=22.59 E-value=1e+02 Score=24.46 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHH
Q 035144 4 VLRVRLASFFTGAATASALGLYILH 28 (72)
Q Consensus 4 mlrvRlaSFf~GaA~As~~G~y~L~ 28 (72)
.-|+|+..|..|++.|+.+|..+-.
T Consensus 308 v~rvkl~afalsa~lAglAG~l~a~ 332 (419)
T PRK11301 308 PTRIKLSAFTIGAAFAGFAGTFFAA 332 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999987654
No 142
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.55 E-value=2.6e+02 Score=20.06 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035144 40 QQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 40 ~qv~~ly~aL~~RIsaLE~ 58 (72)
.+++.-.++|+.||..||.
T Consensus 88 ~~~~~~l~~L~~ri~~L~~ 106 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEE 106 (247)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666654
No 143
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=22.48 E-value=72 Score=21.47 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=7.3
Q ss_pred HHHHHHHHHhHHHH
Q 035144 11 SFFTGAATASALGL 24 (72)
Q Consensus 11 SFf~GaA~As~~G~ 24 (72)
||..|++++.++|+
T Consensus 43 slL~Gi~~G~~vG~ 56 (118)
T PF12597_consen 43 SLLYGIAGGFGVGG 56 (118)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
No 144
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.27 E-value=34 Score=20.69 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 035144 26 ILHNDYKLAHESISQQVK 43 (72)
Q Consensus 26 ~L~kD~~~ah~~ia~qv~ 43 (72)
|+..|...+...|..+.+
T Consensus 55 fv~~~~~~~~~~L~~~~~ 72 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIE 72 (106)
T ss_dssp EEEEEHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 333455555555555554
No 145
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=22.13 E-value=1.9e+02 Score=17.37 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 36 ESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 36 ~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+.++.++-+=-+-..+||..||+.-
T Consensus 20 q~mS~~I~~riDeM~~RIDdLE~si 44 (54)
T PF06825_consen 20 QTMSDQILGRIDEMSSRIDDLEKSI 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444443333456778999999853
No 146
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=21.98 E-value=1.2e+02 Score=22.09 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHH
Q 035144 4 VLRVRLASFFTGAATASALGLYILH 28 (72)
Q Consensus 4 mlrvRlaSFf~GaA~As~~G~y~L~ 28 (72)
.-|+|+.+|..+.+.|+.+|..+-.
T Consensus 188 v~r~~~~a~~isg~laglaG~l~a~ 212 (291)
T TIGR03409 188 TRRVDALTFALGSGIAGVAGVALTL 212 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999988887654
No 147
>PHA00442 host recBCD nuclease inhibitor
Probab=21.90 E-value=98 Score=19.43 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhhcccC
Q 035144 42 VKSLHQSLDRRISTLETLKHDE 63 (72)
Q Consensus 42 v~~ly~aL~~RIsaLE~~~~~~ 63 (72)
++.+-++|++|..-|+.+...|
T Consensus 18 ~q~yidsLek~~~~L~~Lea~G 39 (59)
T PHA00442 18 MQGYIDSLEKDNEFLKALRACG 39 (59)
T ss_pred HHHHHHHHHHhhHHHHHHHHcC
Confidence 4566789999988888766543
No 148
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=21.78 E-value=1.5e+02 Score=17.75 Aligned_cols=7 Identities=57% Similarity=0.824 Sum_probs=2.7
Q ss_pred HHHHHhh
Q 035144 51 RRISTLE 57 (72)
Q Consensus 51 ~RIsaLE 57 (72)
+||..||
T Consensus 20 ~~i~~lE 26 (71)
T PF10779_consen 20 ERIDKLE 26 (71)
T ss_pred HHHHHHH
Confidence 3333333
No 149
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=21.66 E-value=71 Score=27.29 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHhhhhccc
Q 035144 34 AHESISQQVKSL--------------HQSLDRRISTLETLKHD 62 (72)
Q Consensus 34 ah~~ia~qv~~l--------------y~aL~~RIsaLE~~~~~ 62 (72)
|=+.|..+++++ ++.||+||..||+.-+.
T Consensus 372 aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d 414 (550)
T PF00509_consen 372 AIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDD 414 (550)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 345556667776 88899999999986554
No 150
>COG4461 LprI Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]
Probab=21.58 E-value=3.6e+02 Score=20.24 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=46.4
Q ss_pred hhHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc
Q 035144 5 LRVRLASFF-TGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDET 64 (72)
Q Consensus 5 lrvRlaSFf-~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~~ 64 (72)
+-++++|-+ -+||-+.-+.++--..+.....++-..-+..|-.+.+.||..|-+....-.
T Consensus 46 lD~~~~t~Y~ql~a~~~~~~lr~~qq~Wlk~r~~C~sDtdcl~~AY~~ri~qL~~a~~~I~ 106 (185)
T COG4461 46 LDVTLSTAYQQLFAMGRRGALRDAQQSWLKLRNACASDTDCLQRAYEQRLAQLSKADPSID 106 (185)
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhccccccc
Confidence 346777777 677777888888888888888877777777788899999999987655433
No 151
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=21.18 E-value=3.8e+02 Score=20.47 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=22.3
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.|..|+++-..+.++.+- |..-|..--+--..||+.||+++.-+|+.+
T Consensus 137 e~~~g~~~l~~l~~~~~i--~~~f~~~~~~L~~~LNnrlE~eV~~i~~~~ 184 (237)
T PF13748_consen 137 EFWLGLACLLILALFLLI--LPRFARRNYRLYRRLNNRLEKEVDIIERRK 184 (237)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHccHhhcCC
Confidence 455566555444443332 222222222223445566666666666544
No 152
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=20.99 E-value=67 Score=22.20 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 6 RVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 6 rvRlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+.|++.|.--.+--.+.+.. -++...|+.||+-+.-=.+++.+-++.|++..
T Consensus 156 ~~Rla~~Ll~l~~~~g~~~~---i~i~lt~~~IA~~lGisretlsR~L~~L~~~G 207 (230)
T PRK09391 156 MERVAAFLLEMDERLGGAGM---MALPMSRRDIADYLGLTIETVSRALSQLQDRG 207 (230)
T ss_pred HHHHHHHHHHHHHHhCCCCE---EEecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 56777776654432221100 03567888998887665778999999998764
No 153
>PRK08386 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=20.94 E-value=1.2e+02 Score=21.13 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 035144 11 SFFTGAATASALGLYILHNDYKLAHESIS 39 (72)
Q Consensus 11 SFf~GaA~As~~G~y~L~kD~~~ah~~ia 39 (72)
.|-+|+..|+++.++.|--+++...+.+.
T Consensus 36 GF~gG~i~a~a~iL~~la~g~~~~~~~~~ 64 (151)
T PRK08386 36 GFQGGATIAGGGALFLVAFGLDEVKKRFN 64 (151)
T ss_pred hHHHHHHHHHHHHHHHHHCCcHHHHHHcC
Confidence 58899999999999999888776665443
No 154
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=20.92 E-value=1.1e+02 Score=24.98 Aligned_cols=14 Identities=50% Similarity=0.574 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
-..|+|||+.||..
T Consensus 94 ~~~~~~~~~~le~e 107 (408)
T PLN03193 94 IQTLDKTISNLEME 107 (408)
T ss_pred HHHHhhhhhHHhHH
Confidence 35889999999974
No 155
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=20.90 E-value=1.1e+02 Score=20.98 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=15.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 37 SISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
+++.-.+.| -.++.++|+.||+.=
T Consensus 17 s~s~AA~~L~itqpavS~~Ik~LE~~l 43 (291)
T TIGR03418 17 SFTAAARELGSTQPAVSQQVKRLEEEL 43 (291)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 444444555 467888888888753
No 156
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=20.82 E-value=1.9e+02 Score=16.94 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHH
Q 035144 8 RLASFFTGAATASALGLYILHNDYKL 33 (72)
Q Consensus 8 RlaSFf~GaA~As~~G~y~L~kD~~~ 33 (72)
=+.+||+++.+-++.-+.=| +|||.
T Consensus 18 gltv~f~~~L~PagWVLshL-~~YKk 42 (44)
T PF02285_consen 18 GLTVCFVTFLGPAGWVLSHL-ESYKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHTH-HHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHH-HHhhc
Confidence 36778888877766544433 45553
No 157
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=20.69 E-value=1.1e+02 Score=23.21 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144 37 SISQQVKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 37 ~ia~qv~~ly~aL~~RIsaLE~~~~ 61 (72)
.|-+|+. -|++|+.+||....
T Consensus 199 ~lrrQi~----klnrRl~~lE~~n~ 219 (246)
T PF05644_consen 199 SLRRQII----KLNRRLQALEEENK 219 (246)
T ss_pred HHHHHHH----HHhHHHHHHHHHhH
Confidence 4667777 78999999998653
No 158
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=20.68 E-value=1.2e+02 Score=20.46 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=11.7
Q ss_pred HHHHHHH--HHhHHHHHHHHHhH
Q 035144 11 SFFTGAA--TASALGLYILHNDY 31 (72)
Q Consensus 11 SFf~GaA--~As~~G~y~L~kD~ 31 (72)
+||.|.+ +.++.+.|++++=+
T Consensus 27 Af~kG~~tFv~G~~~~f~~Q~~i 49 (94)
T PF15110_consen 27 AFMKGLFTFVLGTGATFFLQKAI 49 (94)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555544 34556667766543
No 159
>PF07756 DUF1612: Protein of unknown function (DUF1612); InterPro: IPR011670 This family includes sequences of largely unknown function but which share a number of features in common. They are expressed by bacterial species, and in many cases these bacteria are known to associate symbiotically with plants. Moreover, the majority are coded for by plasmids, which in many cases are known to confer on the organism the ability to interact symbiotically with leguminous plants. An example of such a plasmid is NGR234, which encodes Y4CF, a protein of unknown function that is a member of this family []. Other members of this family are expressed by organisms with a documented genomic similarity to plant symbionts [].
Probab=20.60 E-value=1e+02 Score=21.81 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 035144 7 VRLASFFTGAATASALGL 24 (72)
Q Consensus 7 vRlaSFf~GaA~As~~G~ 24 (72)
+||..|.-|+.+|+-+||
T Consensus 92 tRL~a~l~a~~~aA~~gm 109 (128)
T PF07756_consen 92 TRLLAFLDAIEAAAEAGM 109 (128)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 699999999999999997
No 160
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=20.57 E-value=1.6e+02 Score=15.89 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035144 18 TASALGLYILHNDYKLAHESISQQVKSL 45 (72)
Q Consensus 18 ~As~~G~y~L~kD~~~ah~~ia~qv~~l 45 (72)
..+.+.+..|+.|+..-+..+..+++..
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~f 42 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEF 42 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999999888754
No 161
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=20.34 E-value=2.4e+02 Score=17.87 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035144 34 AHESISQQVKSLHQSLDR 51 (72)
Q Consensus 34 ah~~ia~qv~~ly~aL~~ 51 (72)
-|=+-++..+.+|+.|||
T Consensus 37 hHWn~qrkt~~fY~~Lek 54 (63)
T PLN03155 37 HHWNEQRKTRSFYDLLEK 54 (63)
T ss_pred hhhhhHHHHHHHHHHHhc
Confidence 355667778999999985
No 162
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=20.26 E-value=1e+02 Score=22.87 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhcc
Q 035144 47 QSLDRRISTLETLKH 61 (72)
Q Consensus 47 ~aL~~RIsaLE~~~~ 61 (72)
+.||.||..||.++.
T Consensus 162 ~~LE~qvr~L~~R~~ 176 (177)
T PF14965_consen 162 RHLERQVRELNIRQR 176 (177)
T ss_pred HHHHHHHHHHHHHhc
Confidence 377888888877654
No 163
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=20.23 E-value=81 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=17.0
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhhcc
Q 035144 37 SISQQVKSL---HQSLDRRISTLETLKH 61 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~~~ 61 (72)
+++.-.+.| -.++.++|+.||+.=+
T Consensus 13 s~~~AA~~L~isqsavS~~i~~LE~~lg 40 (279)
T TIGR03339 13 SFTRAAERLGLSQPTVTDQVRKLEERYG 40 (279)
T ss_pred CHHHHHHHhcCCchHHHHHHHHHHHHhC
Confidence 444445555 5688899999998644
No 164
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=20.20 E-value=2.8e+02 Score=20.88 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035144 31 YKLAHESISQQVKSLHQSLDRRIS 54 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIs 54 (72)
...-.+-+...|+-++.-|+.|||
T Consensus 184 leek~Kk~~~KV~Kl~~dLe~rIs 207 (214)
T PF06401_consen 184 LEEKIKKLGRKVKKLHQDLESRIS 207 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455556777888899987
No 165
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=1.2e+02 Score=20.97 Aligned_cols=12 Identities=33% Similarity=0.756 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhh
Q 035144 47 QSLDRRISTLET 58 (72)
Q Consensus 47 ~aL~~RIsaLE~ 58 (72)
+.|++||..||.
T Consensus 93 d~Lerqv~~Len 104 (108)
T COG3937 93 DALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 166
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=20.09 E-value=1.7e+02 Score=17.87 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhh
Q 035144 43 KSLHQSLDRRISTLETL 59 (72)
Q Consensus 43 ~~ly~aL~~RIsaLE~~ 59 (72)
..-++.|..-|+.||.+
T Consensus 37 ~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 37 AAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 33377999999999974
No 167
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.07 E-value=1.5e+02 Score=22.89 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 34 AHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 34 ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
+=+.++.|++ .|++||..|+..
T Consensus 56 ALk~a~~~i~----eLe~ri~~lq~~ 77 (233)
T COG3416 56 ALKKASTQIK----ELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHH----HHHHHHHHHhcc
Confidence 3444555566 789999999885
No 168
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.04 E-value=2.5e+02 Score=20.50 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 27 LHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 27 L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
|-.-+...|..+..+.+ .|+++|..||+..
T Consensus 114 L~~~Vd~~~~eL~~eI~----~L~~~i~~le~~~ 143 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIK----QLEKEIQRLEEIQ 143 (171)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34456667777777776 6788888887643
No 169
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.03 E-value=2e+02 Score=18.52 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=9.9
Q ss_pred HHHHhHHHHH---HHHHHHHHHH
Q 035144 26 ILHNDYKLAH---ESISQQVKSL 45 (72)
Q Consensus 26 ~L~kD~~~ah---~~ia~qv~~l 45 (72)
++..|++.-- ++++.+|.++
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l 30 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554332 3455666655
Done!