Query 035144
Match_columns 72
No_of_seqs 27 out of 29
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 15:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pnv_A Small conductance calci 89.5 0.42 1.4E-05 27.1 3.4 14 46-59 18-31 (43)
2 1zva_A E2 glycoprotein; membra 69.7 1.1 3.6E-05 28.6 0.2 36 23-58 15-50 (77)
3 1ci6_A Transcription factor AT 67.4 11 0.00038 21.8 4.4 26 35-60 25-53 (63)
4 2lbg_A Major prion protein; co 66.7 6 0.0002 20.8 2.8 18 9-27 4-21 (27)
5 2oqq_A Transcription factor HY 65.6 11 0.00039 21.4 4.0 16 46-61 19-34 (42)
6 3hls_A Guanylate cyclase solub 65.3 18 0.00063 21.2 5.2 36 26-61 10-45 (66)
7 2zqm_A Prefoldin beta subunit 60.3 1.9 6.5E-05 26.2 0.1 34 22-59 59-92 (117)
8 1hwt_C Protein (heme activator 60.2 7 0.00024 22.1 2.5 18 44-61 58-75 (81)
9 3ljm_A Coil Ser L9C; de novo d 58.8 19 0.00064 19.2 4.2 10 48-57 19-28 (31)
10 3lt7_A Adhesin YADA; adhesion, 58.7 21 0.00073 21.6 4.6 37 28-64 12-54 (64)
11 2pnv_A Small conductance calci 54.8 26 0.00088 19.5 5.0 33 23-59 6-38 (43)
12 1fxk_A Prefoldin; archaeal pro 54.7 3.1 0.00011 24.9 0.3 34 22-59 54-87 (107)
13 1pyi_A Protein (pyrimidine pat 52.3 11 0.00037 21.9 2.5 14 46-59 50-63 (96)
14 1aq5_A Matrilin-1, CMP, cartil 52.3 15 0.00052 21.1 3.0 14 46-59 32-45 (47)
15 1zme_C Proline utilization tra 52.2 12 0.0004 20.5 2.5 11 48-58 48-58 (70)
16 1d66_A Protein (GAL4); protein 52.0 5.7 0.0002 21.5 1.2 13 45-57 53-65 (66)
17 3cvf_A Homer-3, homer protein 50.5 7.8 0.00027 24.1 1.7 26 34-59 7-35 (79)
18 2los_A Transmembrane protein 1 55.0 3.5 0.00012 27.3 0.0 32 1-32 36-69 (121)
19 2er8_A Regulatory protein Leu3 48.9 13 0.00046 20.5 2.5 16 46-61 51-66 (72)
20 3u59_A Tropomyosin beta chain; 46.9 47 0.0016 20.3 5.1 13 46-58 88-100 (101)
21 2loo_A Transmembrane protein 1 52.6 4.1 0.00014 26.4 0.0 32 1-32 27-60 (108)
22 3cve_A Homer protein homolog 1 45.6 19 0.00066 22.0 2.9 23 37-59 4-29 (72)
23 2wt7_A Proto-oncogene protein 44.3 29 0.00099 19.8 3.4 25 36-60 26-53 (63)
24 3coq_A Regulatory protein GAL4 43.6 18 0.00063 20.5 2.5 14 46-59 47-60 (89)
25 1a93_B MAX protein, coiled coi 42.5 40 0.0014 18.2 3.7 24 34-57 11-34 (34)
26 2lw1_A ABC transporter ATP-bin 41.4 15 0.00052 22.0 2.0 12 48-59 33-44 (89)
27 3e1r_A Centrosomal protein of 39.2 30 0.001 20.8 3.0 25 40-64 30-54 (58)
28 3u1c_A Tropomyosin alpha-1 cha 37.3 72 0.0025 19.6 5.2 13 46-58 88-100 (101)
29 1nkp_B MAX protein, MYC proto- 36.9 54 0.0018 19.1 3.9 12 46-57 70-81 (83)
30 3p8c_E Probable protein brick1 36.4 44 0.0015 20.7 3.5 17 42-58 43-59 (75)
31 3pp5_A BRK1, protein brick1; t 36.2 44 0.0015 20.5 3.5 19 41-59 42-60 (73)
32 1zhc_A Hypothetical protein HP 35.6 24 0.00082 21.0 2.2 16 46-61 26-41 (76)
33 1gu4_A CAAT/enhancer binding p 35.2 51 0.0017 20.0 3.7 23 37-59 40-65 (78)
34 2vrs_A Sigma-C capsid protein; 35.2 45 0.0015 24.3 4.0 26 33-62 18-43 (211)
35 4ati_A MITF, microphthalmia-as 35.1 18 0.00062 23.1 1.7 16 46-61 100-115 (118)
36 1zjr_A TRNA (guanosine-2'-O-)- 34.9 31 0.0011 23.4 2.9 49 16-64 157-210 (211)
37 3vmx_A Voltage-gated hydrogen 34.7 67 0.0023 18.5 4.7 29 30-58 8-39 (48)
38 4ghu_A TNF receptor-associated 34.3 93 0.0032 20.7 5.2 37 26-63 4-40 (198)
39 1sb0_B Protein C-MYB; CREB-bin 34.1 18 0.0006 18.8 1.2 9 50-58 2-10 (26)
40 3txs_A Terminase DNA packaging 33.1 57 0.0019 21.2 3.8 41 27-70 22-62 (94)
41 1hjb_A Ccaat/enhancer binding 32.8 58 0.002 20.2 3.7 24 37-60 40-66 (87)
42 4g1a_A AQ-C16C19 peptide; heli 32.3 26 0.00088 18.8 1.7 11 48-58 4-14 (32)
43 1jnm_A Proto-oncogene C-JUN; B 30.9 74 0.0025 17.8 3.7 23 38-60 27-52 (62)
44 2wuj_A Septum site-determining 30.8 48 0.0017 18.6 2.9 11 47-57 44-54 (57)
45 1sed_A APC1180, hypothetical p 29.4 19 0.00064 24.2 1.1 11 48-58 5-15 (117)
46 4ath_A MITF, microphthalmia-as 28.5 1.1E+02 0.0038 19.1 4.7 20 42-61 61-80 (83)
47 3ra3_A P1C; coiled coil domain 28.4 36 0.0012 17.7 1.8 12 46-57 9-20 (28)
48 3efg_A Protein SLYX homolog; x 27.9 24 0.00083 21.3 1.3 12 48-59 11-22 (78)
49 1t2k_D Cyclic-AMP-dependent tr 27.6 85 0.0029 17.5 4.4 24 36-59 25-51 (61)
50 3gw6_A Endo-N-acetylneuraminid 27.6 35 0.0012 25.6 2.4 12 47-58 263-274 (275)
51 2esn_A Probable transcriptiona 27.6 42 0.0014 21.5 2.5 14 46-59 38-51 (310)
52 3szp_A Transcriptional regulat 27.4 44 0.0015 20.8 2.5 26 36-61 16-44 (291)
53 1nkp_A C-MYC, MYC proto-oncoge 25.7 1.1E+02 0.0039 18.3 4.6 13 46-58 75-87 (88)
54 3o0z_A RHO-associated protein 25.6 1.1E+02 0.0039 21.2 4.6 16 46-61 120-135 (168)
55 1avy_A Fibritin, gpwac M; bact 25.6 1.3E+02 0.0043 18.8 5.4 29 37-65 19-50 (74)
56 1d7m_A Cortexillin I; coiled-c 25.3 1.2E+02 0.0041 19.8 4.4 30 29-58 14-53 (101)
57 1t3j_A Mitofusin 1; coiled coi 24.3 1.3E+02 0.0046 19.1 4.4 12 48-59 58-69 (96)
58 1ixc_A CBNR, LYSR-type regulat 24.3 54 0.0018 20.6 2.5 24 37-60 17-43 (294)
59 3tkl_B LIDA protein, substrate 24.2 16 0.00055 27.5 0.0 17 46-62 37-53 (267)
60 2dl1_A Spartin; SPG20, MIT, st 23.4 1.6E+02 0.0054 19.3 4.7 34 31-64 69-102 (116)
61 2lon_A HIG1 domain family memb 28.1 18 0.00063 23.1 0.0 32 3-34 60-91 (99)
62 2ksd_A Aerobic respiration con 22.0 3.4 0.00012 27.6 -3.7 35 10-44 57-93 (115)
63 1b9m_A Protein (mode); DNA-bin 21.9 61 0.0021 21.4 2.5 27 35-61 34-63 (265)
64 1xnl_A ASLV/FP, membrane prote 21.7 9.6 0.00033 20.2 -1.2 14 8-21 6-20 (29)
65 1m45_B IQ2, IQ2 motif from MYO 21.4 28 0.00095 17.9 0.6 8 2-9 15-22 (26)
66 1fmh_B General control protein 21.3 54 0.0019 17.6 1.8 13 48-60 5-17 (33)
67 2lom_A HIG1 domain family memb 26.2 21 0.00071 22.6 0.0 31 3-33 59-89 (93)
68 1ez3_A Syntaxin-1A; three heli 20.7 1.3E+02 0.0045 17.9 3.7 24 37-60 54-77 (127)
69 1go4_E MAD1 (mitotic arrest de 20.4 1.3E+02 0.0043 19.3 3.7 17 46-62 28-44 (100)
No 1
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=89.45 E-value=0.42 Score=27.09 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
++.||+||.+||+.
T Consensus 18 ~e~LE~Ri~~LE~K 31 (43)
T 2pnv_A 18 SEDFEKRIVTLETK 31 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 56778888887763
No 2
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=69.69 E-value=1.1 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=28.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035144 23 GLYILHNDYKLAHESISQQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 23 G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~ 58 (72)
.+--|-.-....-.+|+...+++|..||.||++|-.
T Consensus 15 aL~~L~~qL~~NFgAISSsi~dIy~rLdGRlaaLna 50 (77)
T 1zva_A 15 ALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcchHHHHHH
Confidence 344556666677789999999999999999988854
No 3
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.38 E-value=11 Score=21.77 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 35 HESISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 35 h~~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
.+.+.+++++| ++.|..+|+.|+...
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667666 889999999998753
No 4
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=66.69 E-value=6 Score=20.77 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 035144 9 LASFFTGAATASALGLYIL 27 (72)
Q Consensus 9 laSFf~GaA~As~~G~y~L 27 (72)
+.+|++|+.+++. |.|+|
T Consensus 4 ~ga~AAGaVvGgl-Ggy~l 21 (27)
T 2lbg_A 4 AGAAAAGAVVGGL-GGYML 21 (27)
T ss_dssp HHHHHHHHHHHHH-HHHHH
T ss_pred hhhhhhhhhhhhh-HHHHH
Confidence 5789999888755 44544
No 5
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.64 E-value=11 Score=21.38 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
+.-||.|||.|+...+
T Consensus 19 naeLEervstLq~EN~ 34 (42)
T 2oqq_A 19 NSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHH
Confidence 7789999999987653
No 6
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=65.31 E-value=18 Score=21.20 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 035144 26 ILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 26 ~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~ 61 (72)
+|-.....+-..+..+++.+-+.|+.|...||..|+
T Consensus 10 vl~~~q~~ae~~L~~~lE~~~~~Lee~t~~L~~EK~ 45 (66)
T 3hls_A 10 VLLGEQFREEYKLTQELEMLTDRLQLTLRALEDEKK 45 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777888888888999999999988765
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.33 E-value=1.9 Score=26.18 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=21.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 22 LGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 22 ~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
+|-.|+..|..-+...+....+ .++.+|..||+.
T Consensus 59 iG~vfv~~~~~ea~~~L~~~~e----~ie~~i~~le~~ 92 (117)
T 2zqm_A 59 VGTLIVKTTKDKAVAELKEKIE----TLEVRLNALERQ 92 (117)
T ss_dssp ETTEEEEECHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hhHHHhhccHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3455667777777777777776 445555555543
No 8
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=60.15 E-value=7 Score=22.09 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhcc
Q 035144 44 SLHQSLDRRISTLETLKH 61 (72)
Q Consensus 44 ~ly~aL~~RIsaLE~~~~ 61 (72)
...+.|+.||..||..-.
T Consensus 58 ~~~~~L~~ri~~LE~~l~ 75 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345589999999998543
No 9
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.85 E-value=19 Score=19.21 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.5
Q ss_pred HHHHHHHHhh
Q 035144 48 SLDRRISTLE 57 (72)
Q Consensus 48 aL~~RIsaLE 57 (72)
+|||.+.+||
T Consensus 19 alekkleale 28 (31)
T 3ljm_A 19 ALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 10
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=58.67 E-value=21 Score=21.63 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHhHHHHHH--HHHHHHHHH----HHHHHHHHHHhhhhcccCc
Q 035144 28 HNDYKLAHE--SISQQVKSL----HQSLDRRISTLETLKHDET 64 (72)
Q Consensus 28 ~kD~~~ah~--~ia~qv~~l----y~aL~~RIsaLE~~~~~~~ 64 (72)
|-|++++.- ..-++.+.+ |.+|+.+|..+|++..-|-
T Consensus 12 YTD~~v~n~t~~~l~~AN~YTD~KF~qL~nKi~k~~kr~~aGi 54 (64)
T 3lt7_A 12 YTDVTVSNSTKKAIRESNQYTDHKFHQLENRLDKLEKRLLKLL 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhH
Confidence 556665521 122444555 7899999999999765543
No 11
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=54.80 E-value=26 Score=19.55 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 23 GLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 23 G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
.+|=|--|....|+.+..++. +||.|+.+|...
T Consensus 6 ~mydlvsel~~r~e~LE~Ri~----~LE~KLd~L~~~ 38 (43)
T 2pnv_A 6 IMYDMISDLNERSEDFEKRIV----TLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHH
Confidence 367788899999999999988 889999888654
No 12
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=54.69 E-value=3.1 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 22 LGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 22 ~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
+|-.|+..|..-+...+....+ .++.+|+.||+.
T Consensus 54 iG~vfv~~~~~e~~~~L~~~~e----~i~~~i~~le~~ 87 (107)
T 1fxk_A 54 SGNILIRVAKDELTEELQEKLE----TLQLREKTIERQ 87 (107)
T ss_dssp ETTEEEEECHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhHHHHhccHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3445666677777777777766 455666666554
No 13
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=52.32 E-value=11 Score=21.92 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
.+.|++||..||..
T Consensus 50 ~~~Le~rl~~le~~ 63 (96)
T 1pyi_A 50 VFFLEDRLAVMMRV 63 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34677777777763
No 14
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=52.29 E-value=15 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
.+++.+||.+||++
T Consensus 32 L~~vt~rle~lEnr 45 (47)
T 1aq5_A 32 LEAVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34778888888875
No 15
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=52.18 E-value=12 Score=20.55 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=5.2
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
.|++||..||.
T Consensus 48 ~L~~ri~~Le~ 58 (70)
T 1zme_C 48 QLQKDLNDKTE 58 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 16
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=51.98 E-value=5.7 Score=21.47 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhh
Q 035144 45 LHQSLDRRISTLE 57 (72)
Q Consensus 45 ly~aL~~RIsaLE 57 (72)
..+.|+.||..||
T Consensus 53 ~~~~Le~rl~~LE 65 (66)
T 1d66_A 53 HLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHc
Confidence 3458999999988
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.46 E-value=7.8 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 34 AHESISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 34 ah~~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
-++.++++++++ |..|+.||+.||..
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345556666665 77888888888764
No 18
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=55.04 E-value=3.5 Score=27.31 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=25.7
Q ss_pred CchhhhHHHHHHHHHHHHHh--HHHHHHHHHhHH
Q 035144 1 MGYVLRVRLASFFTGAATAS--ALGLYILHNDYK 32 (72)
Q Consensus 1 mg~mlrvRlaSFf~GaA~As--~~G~y~L~kD~~ 32 (72)
|||+.+--..|..+|...++ +++.|.+++|-+
T Consensus 36 iGY~k~gS~~SLiaGl~~G~l~~~~a~~~~~~~~ 69 (121)
T 2los_A 36 IGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPR 69 (121)
Confidence 69999999999999987765 456678888755
No 19
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=48.91 E-value=13 Score=20.53 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
.+.|++||..||..-+
T Consensus 51 ~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 51 NEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888888887543
No 20
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.91 E-value=47 Score=20.28 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhh
Q 035144 46 HQSLDRRISTLET 58 (72)
Q Consensus 46 y~aL~~RIsaLE~ 58 (72)
..+|++||+-||-
T Consensus 88 vasLnRriqllEE 100 (101)
T 3u59_A 88 VASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 5689999998874
No 21
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=52.59 E-value=4.1 Score=26.36 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=24.4
Q ss_pred CchhhhHHHHHHHHHHHHHh--HHHHHHHHHhHH
Q 035144 1 MGYVLRVRLASFFTGAATAS--ALGLYILHNDYK 32 (72)
Q Consensus 1 mg~mlrvRlaSFf~GaA~As--~~G~y~L~kD~~ 32 (72)
|||+.+--..|..+|...++ +++.|.+++|=+
T Consensus 27 ~GY~k~gS~~SL~aG~~~G~ll~~~~~~~~~~~~ 60 (108)
T 2loo_A 27 FGYKRRGGVPSLIAGLFVGCLAGYGAYRVSNDKR 60 (108)
Confidence 68999999999999987765 445577776643
No 22
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.64 E-value=19 Score=22.03 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=15.2
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 37 SISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
.++++++++ |..|+.||+.||..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~ 29 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQR 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344555555 77788888888764
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=44.28 E-value=29 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=17.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 36 ESISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 36 ~~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
..+.++|+.| ++.|...|+.|+...
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555 788888888887654
No 24
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=43.58 E-value=18 Score=20.48 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
.+.|+.||..||..
T Consensus 47 ~~~L~~r~~~le~~ 60 (89)
T 3coq_A 47 LTEVESRLERLEQL 60 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34778888888863
No 25
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.48 E-value=40 Score=18.22 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 035144 34 AHESISQQVKSLHQSLDRRISTLE 57 (72)
Q Consensus 34 ah~~ia~qv~~ly~aL~~RIsaLE 57 (72)
+|++=..+.+.=+..||..|.+||
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHHHHHHHHHHHHHHHHhcC
Confidence 444444444444888999998887
No 26
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.41 E-value=15 Score=22.03 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=6.0
Q ss_pred HHHHHHHHhhhh
Q 035144 48 SLDRRISTLETL 59 (72)
Q Consensus 48 aL~~RIsaLE~~ 59 (72)
.|+.+|..||..
T Consensus 33 ~LE~~i~~le~~ 44 (89)
T 2lw1_A 33 DLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 27
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=39.18 E-value=30 Score=20.77 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCc
Q 035144 40 QQVKSLHQSLDRRISTLETLKHDET 64 (72)
Q Consensus 40 ~qv~~ly~aL~~RIsaLE~~~~~~~ 64 (72)
+|=+-+-+.|..||-.||+.-+..+
T Consensus 30 qqReayV~gll~~i~eleq~~~~a~ 54 (58)
T 3e1r_A 30 QQREVYVKGLLAKIFELEKKTETAA 54 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3434445789999999997655443
No 28
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=37.31 E-value=72 Score=19.64 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhh
Q 035144 46 HQSLDRRISTLET 58 (72)
Q Consensus 46 y~aL~~RIsaLE~ 58 (72)
..+|++||+-||-
T Consensus 88 v~~L~RriqllEE 100 (101)
T 3u1c_A 88 VASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc
Confidence 5689999998884
No 29
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.91 E-value=54 Score=19.10 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhh
Q 035144 46 HQSLDRRISTLE 57 (72)
Q Consensus 46 y~aL~~RIsaLE 57 (72)
...|+.+|.+|+
T Consensus 70 ~~~L~~~l~~L~ 81 (83)
T 1nkp_B 70 NALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHHhc
Confidence 455566665554
No 30
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=36.38 E-value=44 Score=20.68 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 035144 42 VKSLHQSLDRRISTLET 58 (72)
Q Consensus 42 v~~ly~aL~~RIsaLE~ 58 (72)
|++-...|+.||+.||.
T Consensus 43 ce~KLa~ln~KL~~LEr 59 (75)
T 3p8c_E 43 CRSRLATLNEKLTALER 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334455555555554
No 31
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=36.15 E-value=44 Score=20.55 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 035144 41 QVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 41 qv~~ly~aL~~RIsaLE~~ 59 (72)
.|++-...|+.||+.||..
T Consensus 42 sce~KLa~ln~kL~~lE~~ 60 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQ 60 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444466677777777653
No 32
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=35.58 E-value=24 Score=21.05 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
|..||++|..||....
T Consensus 26 H~~LD~~I~~le~~~~ 41 (76)
T 1zhc_A 26 HNQLDDDIKTAEQQNA 41 (76)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8899999999997654
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.23 E-value=51 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=16.3
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 37 SISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
.+...+..| +..|..+|+.|+..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 88999999988864
No 34
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=35.19 E-value=45 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 035144 33 LAHESISQQVKSLHQSLDRRISTLETLKHD 62 (72)
Q Consensus 33 ~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~ 62 (72)
.+=-+.+.++. .|++|+.+||+...+
T Consensus 18 ssVS~~~l~ls----~L~~Rv~~le~g~s~ 43 (211)
T 2vrs_A 18 SDISSNGLAIT----DLQDRVKSLESTASH 43 (211)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCTTT
T ss_pred hhhhhhhhhhh----hHHHHHHHHhcCCCC
Confidence 33345566666 789999999975543
No 35
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=35.06 E-value=18 Score=23.10 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
+..|-.||+.||.+.+
T Consensus 100 n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 100 NRHLLLRVQELEMQAR 115 (118)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7789999999998754
No 36
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=34.93 E-value=31 Score=23.39 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=26.3
Q ss_pred HHHHhHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhhcccCc
Q 035144 16 AATASALGLYILHNDYKLAH-----ESISQQVKSLHQSLDRRISTLETLKHDET 64 (72)
Q Consensus 16 aA~As~~G~y~L~kD~~~ah-----~~ia~qv~~ly~aL~~RIsaLE~~~~~~~ 64 (72)
+++|+++.+|=+.+-..... ..-..+.+.+|+.++++|..+.+.++..+
T Consensus 157 vsvAaaI~lye~~rq~~~~~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 210 (211)
T 1zjr_A 157 VSVATGIILYEAQRQREEKGMYSRPSLSEEEIQKILKKWAYEDVIKERKRTLST 210 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSSCSSCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHHHhhccCccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 47888888887765432110 12234567788888888877777665543
No 37
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.67 E-value=67 Score=18.48 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Q 035144 30 DYKLAHESISQQVKSL---HQSLDRRISTLET 58 (72)
Q Consensus 30 D~~~ah~~ia~qv~~l---y~aL~~RIsaLE~ 58 (72)
++|.+.+.++.+|..| .+-+|.+|..|-+
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4666666666666554 4455555555543
No 38
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=34.30 E-value=93 Score=20.70 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 035144 26 ILHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDE 63 (72)
Q Consensus 26 ~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~ 63 (72)
.|.+.+..-+..+.++...| ..|++|+..||....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g 40 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRL-ADMDLRFQVLETASYNG 40 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTCCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccc
Confidence 34444555555565554444 46999999999855443
No 39
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=34.13 E-value=18 Score=18.77 Aligned_cols=9 Identities=44% Similarity=0.756 Sum_probs=7.5
Q ss_pred HHHHHHhhh
Q 035144 50 DRRISTLET 58 (72)
Q Consensus 50 ~~RIsaLE~ 58 (72)
|+||..||-
T Consensus 2 EkriKElEL 10 (26)
T 1sb0_B 2 EKRIKELEL 10 (26)
T ss_dssp HHHHHHHHH
T ss_pred chHHHHHHH
Confidence 689999985
No 40
>3txs_A Terminase DNA packaging enzyme small subunit; helix, small terminase, viral protein; 1.81A {Aeromonas phage 44RR2} PDB: 3txq_A
Probab=33.13 E-value=57 Score=21.15 Aligned_cols=41 Identities=27% Similarity=0.427 Sum_probs=29.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccchhh
Q 035144 27 LHNDYKLAHESISQQVKSLHQSLDRRISTLETLKHDETSQHVEA 70 (72)
Q Consensus 27 L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~~~~~~~~ 70 (72)
|-+||..++..+-.|-.-+.++.+. +||..+.++.+-..++
T Consensus 22 le~DY~~~R~~lh~q~Qml~daa~~---aLE~AknSdsPR~~EV 62 (94)
T 3txs_A 22 QDDDYELVRRNMHYQSQMLLDMAKI---ALENAKNADSPRHVEV 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHccCCchHHHH
Confidence 5689999999988777766655543 6788777777655543
No 41
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.76 E-value=58 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=16.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 37 SISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
.+...+..| +..|..+|..|+...
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555 888999999888753
No 42
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=32.32 E-value=26 Score=18.77 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=8.5
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
+||..|.+||.
T Consensus 4 aleqkiaaleq 14 (32)
T 4g1a_A 4 ALEQKIAALEQ 14 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888875
No 43
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.89 E-value=74 Score=17.83 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=14.7
Q ss_pred HHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 38 ISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 38 ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
+..+|+.| ++.|..+|+.|+...
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445444 777888888877643
No 44
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.78 E-value=48 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.595 Sum_probs=4.4
Q ss_pred HHHHHHHHHhh
Q 035144 47 QSLDRRISTLE 57 (72)
Q Consensus 47 ~aL~~RIsaLE 57 (72)
+.|..+|..||
T Consensus 44 ~~L~~~~~~l~ 54 (57)
T 2wuj_A 44 TELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 34455555444
No 45
>1sed_A APC1180, hypothetical protein YHAI; structural genomics, four helix colied-coil, PSI, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.219.1.1
Probab=29.40 E-value=19 Score=24.19 Aligned_cols=11 Identities=55% Similarity=0.749 Sum_probs=9.7
Q ss_pred HHHHHHHHhhh
Q 035144 48 SLDRRISTLET 58 (72)
Q Consensus 48 aL~~RIsaLE~ 58 (72)
++|+||+.||=
T Consensus 5 sleqRIekLEY 15 (117)
T 1sed_A 5 SMDHRIERLEY 15 (117)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 68999999984
No 46
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=28.48 E-value=1.1e+02 Score=19.05 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 035144 42 VKSLHQSLDRRISTLETLKH 61 (72)
Q Consensus 42 v~~ly~aL~~RIsaLE~~~~ 61 (72)
.+..+..|--||+.||.+..
T Consensus 61 le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 61 LEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 34447789999999998754
No 47
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=28.42 E-value=36 Score=17.75 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhh
Q 035144 46 HQSLDRRISTLE 57 (72)
Q Consensus 46 y~aL~~RIsaLE 57 (72)
+++||..|.+|.
T Consensus 9 ndaleqkiaalk 20 (28)
T 3ra3_A 9 NDALEQKIAALK 20 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 567888887774
No 48
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.92 E-value=24 Score=21.33 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhh
Q 035144 48 SLDRRISTLETL 59 (72)
Q Consensus 48 aL~~RIsaLE~~ 59 (72)
.|+.||..||..
T Consensus 11 ~le~Ri~~LE~k 22 (78)
T 3efg_A 11 ELEARLVELETR 22 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777777753
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.59 E-value=85 Score=17.46 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=15.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhh
Q 035144 36 ESISQQVKSL---HQSLDRRISTLETL 59 (72)
Q Consensus 36 ~~ia~qv~~l---y~aL~~RIsaLE~~ 59 (72)
..+..+++.| +..|...|+.|+..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 77888888887764
No 50
>3gw6_A Endo-N-acetylneuraminidase; chaperone, glycosidase, hydrolase; HET: TAM; 2.60A {Enterobacteria phage K1F}
Probab=27.56 E-value=35 Score=25.64 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhh
Q 035144 47 QSLDRRISTLET 58 (72)
Q Consensus 47 ~aL~~RIsaLE~ 58 (72)
+.|++||++||.
T Consensus 263 ~~learlaaLE~ 274 (275)
T 3gw6_A 263 ERIEARLSALEQ 274 (275)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHhhc
Confidence 378999999995
No 51
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=27.55 E-value=42 Score=21.47 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhh
Q 035144 46 HQSLDRRISTLETL 59 (72)
Q Consensus 46 y~aL~~RIsaLE~~ 59 (72)
-.++.++|++||+.
T Consensus 38 q~avS~~I~~LE~~ 51 (310)
T 2esn_A 38 ASAFSHALGRLRQG 51 (310)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 45667777777764
No 52
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=27.43 E-value=44 Score=20.77 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=16.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhhcc
Q 035144 36 ESISQQVKSL---HQSLDRRISTLETLKH 61 (72)
Q Consensus 36 ~~ia~qv~~l---y~aL~~RIsaLE~~~~ 61 (72)
.+++.-.+.| -.++.++|++||+.=+
T Consensus 16 ~s~t~AA~~L~isq~avS~~i~~LE~~lg 44 (291)
T 3szp_A 16 GSYTSTSKKTMIPVATITRRIQALEDSLN 44 (291)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3444444555 5678888888887543
No 53
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.66 E-value=1.1e+02 Score=18.31 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhhh
Q 035144 46 HQSLDRRISTLET 58 (72)
Q Consensus 46 y~aL~~RIsaLE~ 58 (72)
+..|.+||+.|+.
T Consensus 75 n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 75 REQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhc
Confidence 6788888888864
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=25.64 E-value=1.1e+02 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhhhcc
Q 035144 46 HQSLDRRISTLETLKH 61 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~ 61 (72)
...|-.||+.||+.+.
T Consensus 120 ~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 120 RKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888888654
No 55
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.62 E-value=1.3e+02 Score=18.78 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=18.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhhcccCcc
Q 035144 37 SISQQVKSL---HQSLDRRISTLETLKHDETS 65 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~~~~~~~ 65 (72)
++.+++..+ -.+++..|++||..+-.+..
T Consensus 19 a~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~A 50 (74)
T 1avy_A 19 SVRQEVNTAKGNISSLQGDVQALQEAGYIPEA 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred hhheeeccccchhhhhhhhhHHHHhcCCCCCC
Confidence 555555544 56788888888865544433
No 56
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=25.26 E-value=1.2e+02 Score=19.83 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHH----------HHHHHHHHHHhhh
Q 035144 29 NDYKLAHESISQQVKSL----------HQSLDRRISTLET 58 (72)
Q Consensus 29 kD~~~ah~~ia~qv~~l----------y~aL~~RIsaLE~ 58 (72)
+--|.|.+.+..|.++| +++=++||..||+
T Consensus 14 e~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~a 53 (101)
T 1d7m_A 14 ESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEA 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888887766 3344577777765
No 57
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.33 E-value=1.3e+02 Score=19.12 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhh
Q 035144 48 SLDRRISTLETL 59 (72)
Q Consensus 48 aL~~RIsaLE~~ 59 (72)
.|+++|..||..
T Consensus 58 ~L~~eI~~LE~i 69 (96)
T 1t3j_A 58 RLSKEIDQLEKM 69 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666653
No 58
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=24.27 E-value=54 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 37 SISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 37 ~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
+++.-.+.| -.++.++|++||+.=
T Consensus 17 s~s~AA~~L~isq~avS~~i~~LE~~l 43 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITRQMQALEADL 43 (294)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 344444444 567888888888753
No 59
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=24.21 E-value=16 Score=27.47 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhccc
Q 035144 46 HQSLDRRISTLETLKHD 62 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~ 62 (72)
.+.|++||..||++.+.
T Consensus 37 ~e~L~~rl~kLE~qq~~ 53 (267)
T 3tkl_B 37 GEELEKKLDKLERQGKD 53 (267)
T ss_dssp -----------------
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 67999999999998764
No 60
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.44 E-value=1.6e+02 Score=19.29 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc
Q 035144 31 YKLAHESISQQVKSLHQSLDRRISTLETLKHDET 64 (72)
Q Consensus 31 ~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~~~~~ 64 (72)
-|-.=..|.+.|+.-......||..||+...+..
T Consensus 69 ~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~~~~~ 102 (116)
T 2dl1_A 69 GWESARQMQQKMKETLQNVRTRLEILEKGLATSL 102 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4555667888888888889999999999877543
No 61
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=28.05 E-value=18 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 035144 3 YVLRVRLASFFTGAATASALGLYILHNDYKLA 34 (72)
Q Consensus 3 ~mlrvRlaSFf~GaA~As~~G~y~L~kD~~~a 34 (72)
+|+|-|+..=++=.++=-+..+|..||||+.-
T Consensus 60 klmr~RV~AQg~tV~al~~g~~ysm~~~~~~~ 91 (99)
T 2lon_A 60 HLIHTRVAAQACAVGAIMLGAVYTMYSDYVKR 91 (99)
Confidence 46777876433333333344668889998853
No 62
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=21.99 E-value=3.4 Score=27.56 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHHHHHH--HHHhHHHHHHHHHHHHHH
Q 035144 10 ASFFTGAATASALGLYI--LHNDYKLAHESISQQVKS 44 (72)
Q Consensus 10 aSFf~GaA~As~~G~y~--L~kD~~~ah~~ia~qv~~ 44 (72)
.|+|+|.-.|-++-.|+ +-++.+.|.+.+++-|..
T Consensus 57 rsI~Fgli~aP~viYFls~vVe~LE~SR~~Ls~~V~~ 93 (115)
T 2ksd_A 57 RSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQK 93 (115)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHCCCSSCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888988886655443 345555555555554443
No 63
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=21.85 E-value=61 Score=21.36 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=18.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhhcc
Q 035144 35 HESISQQVKSL---HQSLDRRISTLETLKH 61 (72)
Q Consensus 35 h~~ia~qv~~l---y~aL~~RIsaLE~~~~ 61 (72)
+.+++.-.+.+ +.++.+||.+||+.-+
T Consensus 34 ~gs~~~aa~~l~~s~~~~s~~i~~le~~lg 63 (265)
T 1b9m_A 34 SGSISQGAKDAGISYKSAWDAINEMNQLSE 63 (265)
T ss_dssp HSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 33444445555 7888999999998644
No 64
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.67 E-value=9.6 Score=20.23 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=7.7
Q ss_pred HHHHHHH-HHHHHhH
Q 035144 8 RLASFFT-GAATASA 21 (72)
Q Consensus 8 RlaSFf~-GaA~As~ 21 (72)
+.+|||+ |.|+|.+
T Consensus 6 i~as~faPGvaAAqA 20 (29)
T 1xnl_A 6 IFASILAPGVAAAQA 20 (29)
T ss_dssp STTTSSSTTTHHHHH
T ss_pred HHHHHhCccHHHHHH
Confidence 3456654 6665544
No 65
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=21.37 E-value=28 Score=17.90 Aligned_cols=8 Identities=38% Similarity=1.136 Sum_probs=6.4
Q ss_pred chhhhHHH
Q 035144 2 GYVLRVRL 9 (72)
Q Consensus 2 g~mlrvRl 9 (72)
||++|+|+
T Consensus 15 gfiirqrv 22 (26)
T 1m45_B 15 GFIIRQRV 22 (26)
T ss_dssp HHHHHHHH
T ss_pred eEEEeeec
Confidence 78888886
No 66
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=21.31 E-value=54 Score=17.57 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=10.2
Q ss_pred HHHHHHHHhhhhc
Q 035144 48 SLDRRISTLETLK 60 (72)
Q Consensus 48 aL~~RIsaLE~~~ 60 (72)
+|.+|+++|..++
T Consensus 5 alkkrvqalkarn 17 (33)
T 1fmh_B 5 ALKKRVQALKARN 17 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 7889999987653
No 67
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=26.17 E-value=21 Score=22.58 Aligned_cols=31 Identities=10% Similarity=0.014 Sum_probs=18.1
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 035144 3 YVLRVRLASFFTGAATASALGLYILHNDYKL 33 (72)
Q Consensus 3 ~mlrvRlaSFf~GaA~As~~G~y~L~kD~~~ 33 (72)
+|+|-|+..=++=.++=-+..+|..||||+.
T Consensus 59 klmr~RV~aQg~tV~al~~g~~ys~~~~~~~ 89 (93)
T 2lom_A 59 HLIHMRVAAQGFVVGAMTVGMGYSMYREFWA 89 (93)
Confidence 4677777643332222334456888888874
No 68
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.68 E-value=1.3e+02 Score=17.90 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 37 SISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 37 ~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
.+..++..+...+-+||..|+...
T Consensus 54 ~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 54 ELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555778888898888754
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.44 E-value=1.3e+02 Score=19.29 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhccc
Q 035144 46 HQSLDRRISTLETLKHD 62 (72)
Q Consensus 46 y~aL~~RIsaLE~~~~~ 62 (72)
.+.|.+||..||..-+.
T Consensus 28 ~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 28 RSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66888888888876544
Done!