Query 035144
Match_columns 72
No_of_seqs 27 out of 29
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 15:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035144.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035144hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i1ga1 a.4.5.32 (A:2-61) LprA 51.7 3.2 0.00023 22.0 1.5 37 24-60 9-45 (60)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 49.2 2 0.00014 25.1 0.3 31 25-59 57-87 (107)
3 d2cyya1 a.4.5.32 (A:5-64) Puta 48.6 3.4 0.00025 21.7 1.2 37 24-60 9-45 (60)
4 d2cfxa1 a.4.5.32 (A:1-63) Tran 38.8 5.2 0.00038 21.3 1.0 37 24-60 11-47 (63)
5 d2rfra1 d.17.4.28 (A:1-153) Un 37.0 7.4 0.00054 22.1 1.6 15 47-61 5-19 (153)
6 d1seda_ a.219.1.1 (A:) Hypothe 35.7 4.5 0.00033 25.5 0.5 12 47-58 1-12 (112)
7 d2cg4a1 a.4.5.32 (A:4-66) Regu 34.8 8.8 0.00064 20.2 1.6 37 24-60 11-47 (63)
8 d1fgja_ a.138.1.3 (A:) Hydroxy 34.0 35 0.0026 23.6 5.1 30 4-33 445-480 (499)
9 d2cjja1 a.4.1.3 (A:8-70) Radia 30.9 26 0.0019 18.3 3.1 20 39-58 39-58 (63)
10 d2fcwa1 a.13.1.1 (A:216-320) a 28.3 53 0.0038 20.0 4.7 14 42-55 89-102 (105)
11 d1v54m_ f.23.7.1 (M:) Mitochon 27.6 26 0.0019 18.5 2.7 26 7-33 17-42 (43)
12 d2gaua1 a.4.5.4 (A:152-232) Tr 24.1 4.4 0.00032 21.7 -1.0 56 5-60 2-57 (81)
13 d1nkpb_ a.38.1.1 (B:) Max prot 22.6 57 0.0041 17.5 4.2 12 46-57 70-81 (83)
14 d1b9ma1 a.4.5.8 (A:-1-126) N-t 22.0 31 0.0022 19.5 2.5 25 36-60 33-60 (127)
15 d1t7sa_ a.7.7.1 (A:) BAG-famil 21.8 90 0.0066 19.5 5.3 21 25-45 18-38 (129)
16 d1ydxa1 d.287.1.2 (A:1-193) Bi 21.8 57 0.0042 18.2 3.7 24 36-59 143-166 (193)
17 d1nkpa_ a.38.1.1 (A:) Myc prot 21.6 61 0.0045 17.5 4.6 12 46-57 75-86 (88)
18 d1qtma2 e.8.1.1 (A:423-831) DN 21.6 93 0.0068 20.3 5.3 37 23-59 3-51 (409)
19 d2crfa1 b.55.1.3 (A:8-144) Ran 21.0 44 0.0032 19.7 3.2 19 42-60 118-136 (137)
20 d1ntya1 a.87.1.1 (A:1231-1414) 20.4 29 0.0021 20.4 2.2 22 28-49 158-179 (184)
No 1
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=51.69 E-value=3.2 Score=22.00 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+..|.+|=..+...|+.+++-=-++..+||..||+..
T Consensus 9 l~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~g 45 (60)
T d1i1ga1 9 LEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKG 45 (60)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4567788777888888887544668899999999865
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.16 E-value=2 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 25 YILHNDYKLAHESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 25 y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
.++..|...+...+..+++ .|+.+|+.||++
T Consensus 57 vLv~~~~~e~~~~l~~~~e----~l~~~i~~l~~q 87 (107)
T d1fxka_ 57 ILIRVAKDELTEELQEKLE----TLQLREKTIERQ 87 (107)
T ss_dssp EEEEECHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3444566666666666666 555666666554
No 3
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.59 E-value=3.4 Score=21.72 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+-.|.+|-..+-..|+.+++-=-.+...||..||+..
T Consensus 9 l~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~g 45 (60)
T d2cyya1 9 IKILQNDGKAPLREISKITGLAESTIHERIRKLRESG 45 (60)
T ss_dssp HHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4567777777778888887433668899999999865
No 4
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=38.76 E-value=5.2 Score=21.31 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=25.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+-.|.+|=..+...|+.+++-=-.+..+||..||+..
T Consensus 11 L~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~~g 47 (63)
T d2cfxa1 11 IEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (63)
T ss_dssp HHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3445666666667777776433668899999999864
No 5
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=37.00 E-value=7.4 Score=22.15 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhhcc
Q 035144 47 QSLDRRISTLETLKH 61 (72)
Q Consensus 47 ~aL~~RIsaLE~~~~ 61 (72)
++|+.||+.||...+
T Consensus 5 ~~l~~rl~~led~~a 19 (153)
T d2rfra1 5 TNLAARLRLLEDREE 19 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999987643
No 6
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=35.70 E-value=4.5 Score=25.52 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhh
Q 035144 47 QSLDRRISTLET 58 (72)
Q Consensus 47 ~aL~~RIsaLE~ 58 (72)
+++|+||+.||=
T Consensus 1 ~sle~Rie~LEY 12 (112)
T d1seda_ 1 DSMDHRIERLEY 12 (112)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 378999999984
No 7
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=34.79 E-value=8.8 Score=20.18 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 24 LYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 24 ~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+-.|.+|=..+...|+.+++-=-.+..+||.+||+..
T Consensus 11 L~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~G 47 (63)
T d2cg4a1 11 LEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAG 47 (63)
T ss_dssp HHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456677667777777776433668899999999864
No 8
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {Nitrosomonas europaea [TaxId: 915]}
Probab=34.03 E-value=35 Score=23.61 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHhH------HHHHHHHHhHHH
Q 035144 4 VLRVRLASFFTGAATASA------LGLYILHNDYKL 33 (72)
Q Consensus 4 mlrvRlaSFf~GaA~As~------~G~y~L~kD~~~ 33 (72)
||--....++-|++-.+. .|.|-|.+|+-.
T Consensus 445 ~~~~~~~~~~~g~~~~~p~d~~~~~g~~~~~~~~~~ 480 (499)
T d1fgja_ 445 MGENNLAKMHVGLAHVNPGGWTYTEGWGPMNRAYVE 480 (499)
T ss_dssp HHHTHHHHHHHHHHTTCGGGTSSSSTHHHHHHHHHH
T ss_pred HHHHHhhhhhheeeeeCccchhhhccHHHHHHHHHH
Confidence 444455566777776664 799999999943
No 9
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=30.94 E-value=26 Score=18.28 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 035144 39 SQQVKSLHQSLDRRISTLET 58 (72)
Q Consensus 39 a~qv~~ly~aL~~RIsaLE~ 58 (72)
..||..-|..|.+.|...|+
T Consensus 39 ~~qc~~r~~~L~~dik~ies 58 (63)
T d2cjja1 39 PEEVKKHYEILVEDIKYIES 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 35677779999999998885
No 10
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.30 E-value=53 Score=19.98 Aligned_cols=14 Identities=50% Similarity=0.484 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q 035144 42 VKSLHQSLDRRIST 55 (72)
Q Consensus 42 v~~ly~aL~~RIsa 55 (72)
|+.++..|+.||+.
T Consensus 89 V~Kl~~dLe~rI~~ 102 (105)
T d2fcwa1 89 VKKHLQDLSGRISR 102 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55558888888864
No 11
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.65 E-value=26 Score=18.51 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 035144 7 VRLASFFTGAATASALGLYILHNDYKL 33 (72)
Q Consensus 7 vRlaSFf~GaA~As~~G~y~L~kD~~~ 33 (72)
+=|.+||+++-+-++..+.=| +|||.
T Consensus 17 igLt~~f~~~L~PaGwVLshL-e~YKk 42 (43)
T d1v54m_ 17 IGLSVTFLSFLLPAGWVLYHL-DNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH-HHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHH-HHhcc
Confidence 347889999988876554433 45653
No 12
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=24.08 E-value=4.4 Score=21.66 Aligned_cols=56 Identities=16% Similarity=0.031 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 035144 5 LRVRLASFFTGAATASALGLYILHNDYKLAHESISQQVKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 5 lrvRlaSFf~GaA~As~~G~y~L~kD~~~ah~~ia~qv~~ly~aL~~RIsaLE~~~ 60 (72)
+|.|++.|+.=.+--.+.----..=++..+|+.|+..+.-=.+++.+=|+.|++..
T Consensus 2 v~~Rla~~Ll~l~~~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 2 VRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEeecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 46788877654432111000000003457898898887655778888888888754
No 13
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.60 E-value=57 Score=17.48 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhh
Q 035144 46 HQSLDRRISTLE 57 (72)
Q Consensus 46 y~aL~~RIsaLE 57 (72)
+++|.++|++|.
T Consensus 70 ~~~L~~~l~~L~ 81 (83)
T d1nkpb_ 70 NALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHHhC
Confidence 567777777664
No 14
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=21.95 E-value=31 Score=19.46 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=17.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhhc
Q 035144 36 ESISQQVKSL---HQSLDRRISTLETLK 60 (72)
Q Consensus 36 ~~ia~qv~~l---y~aL~~RIsaLE~~~ 60 (72)
-+++.-.+.+ +.++.++|.+||..=
T Consensus 33 gs~~~AA~~l~~sq~avs~~i~~lE~~l 60 (127)
T d1b9ma1 33 GSISQGAKDAGISYKSAWDAINEMNQLS 60 (127)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHhcCChhHHHHHHHHHHHHh
Confidence 3444445555 889999999999853
No 15
>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1, BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=21.82 E-value=90 Score=19.52 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=15.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 035144 25 YILHNDYKLAHESISQQVKSL 45 (72)
Q Consensus 25 y~L~kD~~~ah~~ia~qv~~l 45 (72)
+-..+|++.++.++.++..++
T Consensus 18 lK~L~~~Ek~v~~~~~kl~~~ 38 (129)
T d1t7sa_ 18 FKMLMQYEKHNLSNLQKAYDL 38 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445688899998888776554
No 16
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=21.77 E-value=57 Score=18.24 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 035144 36 ESISQQVKSLHQSLDRRISTLETL 59 (72)
Q Consensus 36 ~~ia~qv~~ly~aL~~RIsaLE~~ 59 (72)
...++++.++.+.|+++|..++..
T Consensus 143 ~~eQ~~I~~~l~~ld~~i~~~~~~ 166 (193)
T d1ydxa1 143 KNEQHAIANTLSVFDERLENLASL 166 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666655543
No 17
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.65 E-value=61 Score=17.52 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhh
Q 035144 46 HQSLDRRISTLE 57 (72)
Q Consensus 46 y~aL~~RIsaLE 57 (72)
.+.|.+||+.|.
T Consensus 75 ~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 75 REQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 446666666664
No 18
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]}
Probab=21.55 E-value=93 Score=20.34 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHHHHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhh
Q 035144 23 GLYILHNDYKLAHESISQQV------------KSLHQSLDRRISTLETL 59 (72)
Q Consensus 23 G~y~L~kD~~~ah~~ia~qv------------~~ly~aL~~RIsaLE~~ 59 (72)
+++.||+|++.--..+--+| +.+.+.+++++..||..
T Consensus 3 ~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~ 51 (409)
T d1qtma2 3 RLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 51 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCeEeCHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888776555544444 34477788888888764
No 19
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.97 E-value=44 Score=19.68 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 035144 42 VKSLHQSLDRRISTLETLK 60 (72)
Q Consensus 42 v~~ly~aL~~RIsaLE~~~ 60 (72)
...+|+.++.+|.+|.++.
T Consensus 118 ~~~l~~~i~e~i~~l~~~~ 136 (137)
T d2crfa1 118 TGQLYAALHHRILALRSRV 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4577889999999998764
No 20
>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.37 E-value=29 Score=20.44 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 035144 28 HNDYKLAHESISQQVKSLHQSL 49 (72)
Q Consensus 28 ~kD~~~ah~~ia~qv~~ly~aL 49 (72)
+.||+.|-+.+..-++.++++.
T Consensus 158 ~~dl~~al~~i~~v~~~ine~~ 179 (184)
T d1ntya1 158 KGEIKDGLEVMLSVPKRANDAM 179 (184)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777665
Done!