BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035149
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana
GN=COX6B-2 PE=2 SV=1
Length = 78
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/61 (90%), Positives = 58/61 (95%)
Query: 4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AKGEESN+CERFAKYYR+LCPG+WV
Sbjct: 3 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62
Query: 64 S 64
Sbjct: 63 D 63
>sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana
GN=COX6B-3 PE=2 SV=2
Length = 78
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/61 (88%), Positives = 58/61 (95%)
Query: 4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AKGE++NECERFAKYYR+LCPG+WV
Sbjct: 3 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62
Query: 64 S 64
Sbjct: 63 D 63
>sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana
GN=COX6B-1 PE=2 SV=1
Length = 191
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 58/60 (96%)
Query: 4 DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC+AAKG+++ EC++FAK+YRSLCP +WV
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174
>sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1
PE=3 SV=3
Length = 86
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWVS 64
KTAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP WVS
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVS 71
>sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1
SV=2
Length = 86
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWVS 64
KTAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP WV+
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVT 71
>sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3
SV=3
Length = 87
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Query: 1 MAADEIELK-----TAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAK 52
MA ++IE K TAP D RFP NQTR+C+ Y++FHRC + KG + CE + +
Sbjct: 1 MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQR 60
Query: 53 YYRSLCPGDWVS 64
Y+SLCP WV+
Sbjct: 61 VYQSLCPTSWVT 72
>sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1
PE=3 SV=3
Length = 87
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 8/72 (11%)
Query: 1 MAADEIELK-----TAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAK 52
MA ++IE K TAP D RFP NQTR+C+ Y++FHRC + KG + CE + +
Sbjct: 1 MAEEDIETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQR 60
Query: 53 YYRSLCPGDWVS 64
Y+SLCP WV+
Sbjct: 61 VYQSLCPTSWVT 72
>sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3
SV=3
Length = 86
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWVS 64
KTAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y+SLCP WV+
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVT 71
>sp|P56391|CX6B1_MOUSE Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1
SV=2
Length = 86
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 9 KTAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYYRSLCPGDWVS 64
KTAP D RFP NQT++C+ Y++FHRC + AKG + + CE + + Y+SLCP WVS
Sbjct: 13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVS 71
>sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2
Length = 86
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 2 AADEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGD 61
A + T D RFP TNQT+HCF YI++ RC+ AKGE+ C++F Y+SLCP +
Sbjct: 9 APKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPME 68
Query: 62 WV 63
WV
Sbjct: 69 WV 70
>sp|P00429|CX6B1_BOVIN Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1
SV=2
Length = 86
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 8/70 (11%)
Query: 3 ADEIELK-----TAPADFRFPTTNQTRHCFTRYIEFHRC---LAAKGEESNECERFAKYY 54
A++I+ K TAP D RFP NQTR+C+ Y++FHRC + AKG + + CE + + Y
Sbjct: 2 AEDIQAKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVY 61
Query: 55 RSLCPGDWVS 64
+SLCP WVS
Sbjct: 62 KSLCPISWVS 71
>sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2
Length = 83
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 8 LKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
L T D RFP NQT+HC+ Y+++H+C+ KGE+ C+ F K Y +LCP DW+
Sbjct: 9 LHTVGFDARFPQQNQTKHCWQSYVDYHKCVNMKGEDFAPCKVFWKTYNALCPLDWI 64
>sp|Q9LPJ2|CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis
thaliana GN=At1g32710 PE=3 SV=2
Length = 134
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 11 APADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWVSIL 66
A + RFP TN+TRHCF R++++H+C+ G ++N+C Y RS+CP + VS +
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKI 114
>sp|Q54P95|COX6B_DICDI Probable cytochrome c oxidase subunit 6B OS=Dictyostelium
discoideum GN=DDB_G0284693 PE=3 SV=1
Length = 78
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWVS 64
+L+TAP + RFP NQT+HC+ Y++++ C+ ++++C+ F SLCP W+S
Sbjct: 5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWIS 62
>sp|Q6YFP9|CX6B2_BOVIN Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2
SV=1
Length = 88
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 10 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWVS 64
T P D RFP NQTR+C+ ++++HRC+ +G+ + CE + + Y SLCP WV
Sbjct: 16 TPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQ 73
>sp|Q6YFQ2|CX6B2_HUMAN Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2
SV=1
Length = 88
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 10 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWV 63
T P D RFP+ NQ R+C+ ++++HRCL +G+ + CE + + Y SLCP WV
Sbjct: 16 TPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWV 72
>sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2
SV=1
Length = 88
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWV 63
+ T P D RFP NQTR+C+ ++++HRC+ +G+ + CE + + + SLCP WV
Sbjct: 13 QWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWV 72
Query: 64 S 64
Sbjct: 73 Q 73
>sp|Q6YFQ1|CX6B2_RAT Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2
PE=2 SV=1
Length = 88
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 7 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWV 63
+ T P D RFP NQTR+C+ ++++HRC+ +G+ + C+ + + + SLCP WV
Sbjct: 13 QWTTPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWV 72
Query: 64 S 64
Sbjct: 73 Q 73
>sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog OS=Bos taurus
GN=COA6 PE=3 SV=1
Length = 79
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 18 PTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
PT + + C+ E+ +CL E++++C++ + S CP W+
Sbjct: 4 PTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWI 49
>sp|Q5JTJ3|COA6_HUMAN Cytochrome c oxidase assembly factor 6 homolog OS=Homo sapiens
GN=COA6 PE=1 SV=1
Length = 125
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 18 PTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
P+ + + C+ E+ +CL E++++C++ + S CP W+
Sbjct: 50 PSMKERQVCWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWI 95
>sp|Q1DA04|SYN_MYXXD Asparagine--tRNA ligase OS=Myxococcus xanthus (strain DK 1622)
GN=asnS PE=3 SV=1
Length = 466
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 15 FRFPTTNQTRHCFTRY-IEFHRCLAAKGEESNECERFAKYYRSLCPGDWVSILQFFE 70
FR +N TRH + IE A E++N ERF K+ D L+FFE
Sbjct: 233 FRAENSNTTRHLAEFWMIEPEVAFADLNEDANLAERFLKHVFKAVLNDCAPDLKFFE 289
>sp|Q8BGD8|COA6_MOUSE Cytochrome c oxidase assembly factor 6 homolog OS=Mus musculus
GN=Coa6 PE=1 SV=1
Length = 79
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 18 PTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWV 63
P+ + + C+ + RCL E++ C++ + + CP W+
Sbjct: 4 PSMKERQACWGARDLYWRCLDDNAEDAARCQKLRSSFEASCPQQWI 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.138 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,320,362
Number of Sequences: 539616
Number of extensions: 838989
Number of successful extensions: 1849
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1817
Number of HSP's gapped (non-prelim): 22
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)