Query 035149
Match_columns 72
No_of_seqs 103 out of 256
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 100.0 5E-36 1.7E-40 187.0 6.3 65 6-70 9-76 (85)
2 2lqt_A Coiled-coil-helix-coile 96.0 0.0064 2.2E-07 37.5 3.3 39 25-64 15-53 (85)
3 1ei0_A P8MTCP1; helix-turn-hel 91.5 0.17 5.8E-06 26.5 2.7 33 26-58 3-35 (38)
4 2lql_A Coiled-coil-helix-coile 86.1 0.38 1.3E-05 30.3 2.0 36 20-55 55-90 (113)
5 1hp8_A HU-P8; leukemia, cystei 84.5 0.93 3.2E-05 26.6 3.0 33 25-57 6-38 (68)
6 2lql_A Coiled-coil-helix-coile 76.9 1.2 4E-05 28.1 1.7 45 23-67 12-70 (113)
7 1uzc_A Hypothetical protein FL 34.7 19 0.00066 20.6 1.6 24 8-31 40-66 (71)
8 2dod_A Transcription elongatio 34.0 24 0.00082 20.8 2.0 24 8-31 42-67 (82)
9 2juc_A PRE-mRNA-splicing facto 26.8 46 0.0016 18.7 2.3 22 10-31 33-57 (59)
10 2oni_A E3 ubiquitin-protein li 23.6 66 0.0022 23.5 3.2 30 41-70 243-272 (392)
11 3olm_A E3 ubiquitin-protein li 23.0 72 0.0025 23.6 3.3 29 42-70 275-303 (429)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=100.00 E-value=5e-36 Score=187.03 Aligned_cols=65 Identities=46% Similarity=0.909 Sum_probs=61.6
Q ss_pred cccccCCCCCCCCChHHHHHHHHHhHHHHHHHhh---hCCCchhHHHHHHHHHhcChHHHHHhhhhhh
Q 035149 6 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWVSILQFFE 70 (72)
Q Consensus 6 ~~~~t~p~D~RfPn~nQ~k~Cw~~y~dy~rC~~~---~Ged~~~C~~~~~~y~slCP~~Wv~~wd~k~ 70 (72)
..|+|+|+||||||+|||+|||++|++||+|+++ +|+|.++|++|++.|+|+||++||++||++-
T Consensus 9 ~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR 76 (85)
T 1v54_H 9 KNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRR 76 (85)
T ss_dssp CCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 5699999999999999999999999999999555 9999999999999999999999999999973
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=95.96 E-value=0.0064 Score=37.54 Aligned_cols=39 Identities=23% Similarity=0.555 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHHhhhCCCchhHHHHHHHHHhcChHHHHH
Q 035149 25 HCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWVS 64 (72)
Q Consensus 25 ~Cw~~y~dy~rC~~~~Ged~~~C~~~~~~y~slCP~~Wv~ 64 (72)
-|......=.+||+.++.|.+.|..|+..|+ .|-..|++
T Consensus 15 PC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk-~CKk~W~~ 53 (85)
T 2lqt_A 15 PCLSESDASTRCLDENNYDRERCSTYFLRYK-NCRRFWNS 53 (85)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTTTHHHHHHHH-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHH
Confidence 3999999999999999999999999999999 79999976
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=91.54 E-value=0.17 Score=26.48 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHhhhCCCchhHHHHHHHHHhcC
Q 035149 26 CFTRYIEFHRCLAAKGEESNECERFAKYYRSLC 58 (72)
Q Consensus 26 Cw~~y~dy~rC~~~~Ged~~~C~~~~~~y~slC 58 (72)
|-..--.|.+||..+|-|.+.|+.+...+..-|
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 444556899999999999999999999887543
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=86.08 E-value=0.38 Score=30.34 Aligned_cols=36 Identities=14% Similarity=0.441 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhHHHHHHHhhhCCCchhHHHHHHHHH
Q 035149 20 TNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYR 55 (72)
Q Consensus 20 ~nQ~k~Cw~~y~dy~rC~~~~Ged~~~C~~~~~~y~ 55 (72)
+.-.++|-.-+..|+.||+.+..+...|....+.|.
T Consensus 55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~ 90 (113)
T 2lql_A 55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFL 90 (113)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 556789999999999999999999999988888776
No 5
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=84.51 E-value=0.93 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHHHhhhCCCchhHHHHHHHHHhc
Q 035149 25 HCFTRYIEFHRCLAAKGEESNECERFAKYYRSL 57 (72)
Q Consensus 25 ~Cw~~y~dy~rC~~~~Ged~~~C~~~~~~y~sl 57 (72)
-|-..--++..||..+|-|.+.|+.+...++.-
T Consensus 6 PC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eC 38 (68)
T 1hp8_A 6 PCQKQACEIQKCLQANSYMESKCQAVIQELRKC 38 (68)
T ss_dssp TTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 366667789999999999999999999988843
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=76.89 E-value=1.2 Score=28.08 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=31.8
Q ss_pred HHHHHHHhHHHHHHHhhhCC-C----------chhHHH---HHHHHHhcChHHHHHhhh
Q 035149 23 TRHCFTRYIEFHRCLAAKGE-E----------SNECER---FAKYYRSLCPGDWVSILQ 67 (72)
Q Consensus 23 ~k~Cw~~y~dy~rC~~~~Ge-d----------~~~C~~---~~~~y~slCP~~Wv~~wd 67 (72)
.++|-.-..+|++|+..+++ | ...|-. +.+.-++.|..++-.||+
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~ 70 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEE 70 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHH
Confidence 46799999999999976643 2 445643 455666788888888885
No 7
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=34.73 E-value=19 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=18.9
Q ss_pred cccCCCCCCC---CChHHHHHHHHHhH
Q 035149 8 LKTAPADFRF---PTTNQTRHCFTRYI 31 (72)
Q Consensus 8 ~~t~p~D~Rf---Pn~nQ~k~Cw~~y~ 31 (72)
++..-.|||| ++...|+.+|+.|.
T Consensus 40 ~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 40 MKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp HHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHccCccccccCCHHHHHHHHHHHH
Confidence 3445679998 77899999998875
No 8
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=33.99 E-value=24 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=17.6
Q ss_pred cccCCCCCCC--CChHHHHHHHHHhH
Q 035149 8 LKTAPADFRF--PTTNQTRHCFTRYI 31 (72)
Q Consensus 8 ~~t~p~D~Rf--Pn~nQ~k~Cw~~y~ 31 (72)
+.-.-.|||| .+...|+.+|+.|.
T Consensus 42 ~~~i~~DpRY~aL~~~eRK~~F~~y~ 67 (82)
T 2dod_A 42 LHKIVFDPRYLLLNPKERKQVFDQYV 67 (82)
T ss_dssp HHHHHTCSGGGTSCHHHHHHHHHHHH
T ss_pred HHHHccCCccccCCHHHHHHHHHHHH
Confidence 3445689998 34788888888775
No 9
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=26.84 E-value=46 Score=18.67 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=17.5
Q ss_pred cCCCCCCC---CChHHHHHHHHHhH
Q 035149 10 TAPADFRF---PTTNQTRHCFTRYI 31 (72)
Q Consensus 10 t~p~D~Rf---Pn~nQ~k~Cw~~y~ 31 (72)
..-.|||| |+...|+..|+.+.
T Consensus 33 ki~~DpRY~~l~s~~~R~e~F~ew~ 57 (59)
T 2juc_A 33 KIENDPDFYKIRDDTVRESLFEEWC 57 (59)
T ss_dssp HHSSSTTGGGSSCHHHHHHHHHHHH
T ss_pred cccCCCCeeecCChHHHHHHHHHHh
Confidence 34579998 89999999987653
No 10
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=23.61 E-value=66 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCCchhHHHHHHHHHhcChHHHHHhhhhhh
Q 035149 41 GEESNECERFAKYYRSLCPGDWVSILQFFE 70 (72)
Q Consensus 41 Ged~~~C~~~~~~y~slCP~~Wv~~wd~k~ 70 (72)
+.-......|++.|.+++|.+|+.-|+..+
T Consensus 243 ~~i~~q~~af~~Gf~~vip~~~L~~F~~~E 272 (392)
T 2oni_A 243 NRVQKQMNAFLEGFTELLPIDLIKIFDENE 272 (392)
T ss_dssp TTSHHHHHHHHHHHHHHSCHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHhccHHhhhcCCHHH
Confidence 345688999999999999999999886543
No 11
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=23.02 E-value=72 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCchhHHHHHHHHHhcChHHHHHhhhhhh
Q 035149 42 EESNECERFAKYYRSLCPGDWVSILQFFE 70 (72)
Q Consensus 42 ed~~~C~~~~~~y~slCP~~Wv~~wd~k~ 70 (72)
.-......|++.|.+++|.+|+.-|+..+
T Consensus 275 ~v~~q~~aF~~Gf~~vip~~~L~~F~~~E 303 (429)
T 3olm_A 275 RVQEQFKAFMDGFNELIPEDLVTVFDERE 303 (429)
T ss_dssp TTHHHHHHHHHHHHTTSCHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHhhhcCCHHHHhcCCHHH
Confidence 34678999999999999999999886543
Done!