BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035156
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J8M|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8M|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866
pdb|2J8N|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8N|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
At Room Temperature
pdb|2J8R|A Chain A, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
pdb|2J8R|B Chain B, Structure Of P. Aeruginosa Acetyltransferase Pa4866 Solved
In Complex With L-Methionine Sulfoximine
Length = 172
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 11 GIHVFRAKIGESNGASLCLFRKLGFE 36
G+HV A I N AS+ L R+LGFE
Sbjct: 115 GLHVMVAAIESGNAASIGLHRRLGFE 140
>pdb|1YVO|A Chain A, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
pdb|1YVO|B Chain B, Hypothetical Acetyltransferase From P.Aeruginosa Pa01
Length = 172
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 11 GIHVFRAKIGESNGASLCLFRKLGFE 36
G+HV A I N AS+ L R+LGFE
Sbjct: 115 GLHVXVAAIESGNAASIGLHRRLGFE 140
>pdb|2BL1|A Chain A, Crystal Structure Of A Putative Phosphinothricin
Acetyltransferase (Pa4866) From Pseudomonas Aeruginosa
Pac1
Length = 172
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 11 GIHVFRAKIGESNGASLCLFRKLGFE 36
G+HV A I N AS+ L R+LGFE
Sbjct: 115 GLHVXVAAIESGNAASIGLHRRLGFE 140
>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g17340
pdb|2Q40|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g17340
Length = 367
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 20 GESNGASLCLFRKLGFEDISYSEIFKEVTLELPVENAK 57
G +G LC R+ ++ + +IFK+V E ENAK
Sbjct: 96 GPPDGILLCRLREQVLRELGFRDIFKKVKDE---ENAK 130
>pdb|2G4K|A Chain A, Anomalous Substructure Of Human Adp-Ribosylhydrolase 3
Length = 347
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 21 ESNGASLCLFRKLGFEDISYSEIFKEVTLELPVENAKREELLVLTGN 67
E + S+ R+LG E+ YS K++ L + REE++ GN
Sbjct: 207 EGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGN 253
>pdb|2FOZ|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|B Chain B, Human Adp-Ribosylhydrolase 3
Length = 347
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 21 ESNGASLCLFRKLGFEDISYSEIFKEVTLELPVENAKREELLVLTGN 67
E + S+ R+LG E+ YS K++ L + REE++ GN
Sbjct: 207 EGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGN 253
>pdb|4IGC|X Chain X, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|Y Chain Y, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 613
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 36 EDISYSEIFKEVTLELPVENAKREELLVLTGNVV 69
ED + ++ TLELP+++A E L T +V+
Sbjct: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548
>pdb|3IYD|F Chain F, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 613
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 36 EDISYSEIFKEVTLELPVENAKREELLVLTGNVV 69
ED + ++ TLELP+++A E L T +V+
Sbjct: 515 EDSHLGDFIEDTTLELPLDSATTESLRAATHDVL 548
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,960,744
Number of Sequences: 62578
Number of extensions: 61734
Number of successful extensions: 150
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 11
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)