Query 035156
Match_columns 72
No_of_seqs 133 out of 958
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:40:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4135 Predicted phosphogluco 99.1 1.6E-10 3.5E-15 77.1 4.4 54 1-54 131-184 (185)
2 COG1670 RimL Acetyltransferase 99.1 1.1E-10 2.4E-15 73.6 3.4 42 1-42 119-160 (187)
3 PRK10809 ribosomal-protein-S5- 99.0 7.3E-10 1.6E-14 72.5 5.5 41 2-42 128-168 (194)
4 PRK10151 ribosomal-protein-L7/ 99.0 4.1E-10 9E-15 72.7 3.9 41 2-42 117-157 (179)
5 TIGR03585 PseH pseudaminic aci 98.9 1.7E-09 3.6E-14 67.8 3.9 43 2-44 100-142 (156)
6 PF13420 Acetyltransf_4: Acety 98.8 5.3E-09 1.1E-13 65.5 3.8 43 2-44 101-143 (155)
7 PRK15130 spermidine N1-acetylt 98.8 7.2E-09 1.6E-13 67.3 4.3 40 2-41 107-146 (186)
8 PF13302 Acetyltransf_3: Acety 98.8 1E-08 2.2E-13 62.8 4.0 36 1-36 107-142 (142)
9 PRK10140 putative acetyltransf 98.6 1.3E-07 2.8E-12 59.2 5.4 41 2-42 103-143 (162)
10 PF13523 Acetyltransf_8: Acety 98.5 2.7E-07 5.8E-12 58.0 5.9 42 2-43 103-144 (152)
11 COG1247 Sortase and related ac 98.4 5.1E-07 1.1E-11 60.5 4.7 33 9-41 112-144 (169)
12 TIGR02382 wecD_rffC TDP-D-fuco 98.3 1.2E-06 2.7E-11 57.6 4.6 40 2-42 148-187 (191)
13 PRK10975 TDP-fucosamine acetyl 98.1 6.6E-06 1.4E-10 54.1 5.6 38 3-41 152-189 (194)
14 PRK10514 putative acetyltransf 98.1 4E-06 8.7E-11 51.9 4.2 39 2-42 90-128 (145)
15 PRK03624 putative acetyltransf 98.0 1.2E-05 2.6E-10 48.5 4.8 33 9-41 99-131 (140)
16 PRK09491 rimI ribosomal-protei 98.0 2.7E-05 5.9E-10 48.5 5.7 41 3-44 89-129 (146)
17 TIGR01575 rimI ribosomal-prote 97.9 1.9E-05 4.1E-10 47.2 4.4 41 3-44 80-120 (131)
18 PF00583 Acetyltransf_1: Acety 97.9 2E-05 4.3E-10 44.3 3.8 32 4-36 52-83 (83)
19 PRK10562 putative acetyltransf 97.8 3.5E-05 7.6E-10 48.1 4.3 38 2-41 89-126 (145)
20 PF08445 FR47: FR47-like prote 97.7 0.0001 2.3E-09 43.6 4.5 28 14-41 56-83 (86)
21 TIGR02406 ectoine_EctA L-2,4-d 97.6 9.2E-05 2E-09 47.6 4.2 36 3-39 92-127 (157)
22 TIGR03448 mycothiol_MshD mycot 97.6 0.00012 2.6E-09 50.4 5.0 39 3-42 252-290 (292)
23 COG0456 RimI Acetyltransferase 97.5 0.00023 5.1E-09 45.0 5.1 32 13-44 127-158 (177)
24 TIGR03827 GNAT_ablB putative b 97.5 0.00013 2.8E-09 50.6 4.0 36 9-44 214-249 (266)
25 PLN02706 glucosamine 6-phospha 97.4 0.00026 5.6E-09 44.2 4.2 34 2-39 110-143 (150)
26 PRK10146 aminoalkylphosphonic 97.4 0.00023 5E-09 43.7 3.9 31 9-39 107-137 (144)
27 KOG3139 N-acetyltransferase [G 97.1 0.00093 2E-08 44.9 4.5 36 9-44 115-150 (165)
28 TIGR03103 trio_acet_GNAT GNAT- 96.9 0.0032 7E-08 48.3 6.1 36 9-44 186-221 (547)
29 PTZ00330 acetyltransferase; Pr 96.8 0.0038 8.2E-08 38.3 4.8 34 3-40 108-141 (147)
30 TIGR01686 FkbH FkbH-like domai 96.5 0.0042 9E-08 44.3 3.9 37 2-38 278-319 (320)
31 TIGR03448 mycothiol_MshD mycot 96.1 0.018 3.9E-07 39.6 5.5 39 2-41 91-129 (292)
32 PRK09831 putative acyltransfer 95.6 0.035 7.5E-07 34.7 4.8 36 2-42 93-128 (147)
33 PF13508 Acetyltransf_7: Acety 95.6 0.025 5.4E-07 31.8 3.7 33 2-37 47-79 (79)
34 PF13673 Acetyltransf_10: Acet 95.5 0.034 7.3E-07 32.7 4.2 31 2-35 85-117 (117)
35 KOG2488 Acetyltransferase (GNA 94.9 0.015 3.3E-07 40.1 1.6 32 10-41 152-183 (202)
36 KOG3138 Predicted N-acetyltran 94.8 0.046 1E-06 37.3 3.7 43 2-44 110-156 (187)
37 COG3981 Predicted acetyltransf 94.6 0.17 3.7E-06 34.3 6.1 33 9-41 128-160 (174)
38 PRK07757 acetyltransferase; Pr 94.0 0.078 1.7E-06 32.9 3.3 35 3-43 91-125 (152)
39 PF12746 GNAT_acetyltran: GNAT 93.4 0.29 6.2E-06 34.9 5.6 31 11-44 221-251 (265)
40 COG3393 Predicted acetyltransf 93.3 0.15 3.2E-06 36.7 4.0 24 18-41 240-263 (268)
41 PF08444 Gly_acyl_tr_C: Aralky 93.2 0.087 1.9E-06 32.1 2.4 28 10-38 51-78 (89)
42 PRK10314 putative acyltransfer 92.4 0.19 4.2E-06 32.2 3.4 27 11-40 108-134 (153)
43 PRK07922 N-acetylglutamate syn 92.3 0.26 5.6E-06 32.0 3.9 33 3-41 96-128 (169)
44 KOG3216 Diamine acetyltransfer 91.5 0.51 1.1E-05 31.7 4.6 39 2-40 105-146 (163)
45 PRK05279 N-acetylglutamate syn 91.2 0.27 5.9E-06 36.4 3.4 37 2-42 380-419 (441)
46 KOG3234 Acetyltransferase, (GN 90.9 0.42 9E-06 32.4 3.8 31 13-43 104-134 (173)
47 TIGR03827 GNAT_ablB putative b 90.7 0.29 6.3E-06 33.8 3.0 33 9-44 36-68 (266)
48 PRK13688 hypothetical protein; 90.6 0.42 9.1E-06 31.1 3.5 35 2-41 100-134 (156)
49 cd02169 Citrate_lyase_ligase C 90.5 0.55 1.2E-05 33.8 4.3 35 2-39 46-83 (297)
50 PHA01807 hypothetical protein 90.1 0.71 1.5E-05 30.1 4.3 32 2-33 102-136 (153)
51 TIGR00124 cit_ly_ligase [citra 89.0 0.89 1.9E-05 33.2 4.5 31 9-42 81-111 (332)
52 TIGR01211 ELP3 histone acetylt 88.6 0.85 1.9E-05 35.3 4.4 36 2-40 478-516 (522)
53 PLN02825 amino-acid N-acetyltr 88.5 0.67 1.4E-05 35.9 3.7 36 2-41 453-491 (515)
54 TIGR01890 N-Ac-Glu-synth amino 87.6 0.66 1.4E-05 34.4 3.1 36 2-41 368-406 (429)
55 PHA00432 internal virion prote 87.0 0.63 1.4E-05 30.4 2.5 29 12-40 93-121 (137)
56 COG3818 Predicted acetyltransf 86.8 1.6 3.5E-05 29.0 4.3 35 10-44 116-152 (167)
57 PRK12308 bifunctional arginino 86.4 0.71 1.5E-05 35.9 2.8 38 2-44 548-588 (614)
58 PF11090 DUF2833: Protein of u 85.6 1.1 2.4E-05 27.2 2.8 27 12-38 56-82 (86)
59 PHA01733 hypothetical protein 80.4 1.3 2.8E-05 29.5 1.8 30 12-41 104-133 (153)
60 TIGR03244 arg_catab_AstA argin 80.0 0.89 1.9E-05 33.6 1.1 34 13-46 220-253 (336)
61 PRK10456 arginine succinyltran 79.5 0.92 2E-05 33.7 1.0 34 13-46 222-255 (344)
62 TIGR03245 arg_AOST_alph argini 78.6 0.93 2E-05 33.5 0.8 34 13-46 221-254 (336)
63 TIGR03243 arg_catab_AOST argin 78.2 0.97 2.1E-05 33.4 0.8 34 13-46 220-253 (335)
64 COG1246 ArgA N-acetylglutamate 75.6 3.9 8.4E-05 27.2 3.0 35 3-41 87-124 (153)
65 PHA02769 hypothetical protein; 74.9 2.8 6.1E-05 27.3 2.2 34 9-44 110-143 (154)
66 PF04958 AstA: Arginine N-succ 72.9 1.2 2.7E-05 32.9 0.2 37 15-51 226-263 (342)
67 COG3138 AstA Arginine/ornithin 65.1 5.8 0.00013 29.3 2.3 40 15-54 224-264 (336)
68 KOG3396 Glucosamine-phosphate 63.0 12 0.00026 24.9 3.2 28 9-39 116-143 (150)
69 KOG3235 Subunit of the major N 61.2 16 0.00034 25.1 3.6 34 10-43 104-138 (193)
70 COG3882 FkbH Predicted enzyme 60.5 11 0.00024 29.7 3.2 39 2-40 507-550 (574)
71 COG1437 CyaB Adenylate cyclase 57.5 35 0.00076 23.2 4.9 30 16-46 82-111 (178)
72 cd08356 Glo_EDI_BRP_like_17 Th 55.3 12 0.00026 22.1 2.1 25 17-41 5-30 (113)
73 cd09012 Glo_EDI_BRP_like_24 Th 54.7 12 0.00026 22.0 2.1 19 21-39 9-27 (124)
74 COG1828 PurS Phosphoribosylfor 54.0 46 0.001 20.0 5.0 53 20-72 16-70 (83)
75 PF02100 ODC_AZ: Ornithine dec 53.2 17 0.00037 22.5 2.6 38 2-39 46-86 (108)
76 PF00765 Autoind_synth: Autoin 50.4 41 0.0009 22.4 4.3 54 3-60 122-180 (182)
77 KOG1530 Rhodanese-related sulf 49.3 28 0.00061 22.8 3.2 38 14-63 91-130 (136)
78 PF07927 YcfA: YcfA-like prote 48.1 21 0.00045 18.7 2.2 14 27-40 5-18 (56)
79 PRK10975 TDP-fucosamine acetyl 47.4 51 0.0011 21.2 4.4 30 11-40 3-32 (194)
80 cd08350 BLMT_like BLMT, a bleo 47.0 23 0.0005 20.7 2.5 28 15-42 4-32 (120)
81 cd08358 Glo_EDI_BRP_like_21 Th 45.7 38 0.00083 21.2 3.4 24 18-41 8-32 (127)
82 PF08809 DUF1799: Phage relate 43.9 18 0.00039 21.5 1.6 19 16-34 15-33 (83)
83 cd07235 MRD Mitomycin C resist 43.0 37 0.0008 19.6 2.9 20 19-38 7-26 (122)
84 PRK13834 putative autoinducer 42.9 1E+02 0.0023 20.8 6.0 55 4-62 133-192 (207)
85 cd08353 Glo_EDI_BRP_like_7 Thi 41.6 35 0.00076 20.4 2.8 24 17-40 8-31 (142)
86 PTZ00129 40S ribosomal protein 41.6 93 0.002 20.6 4.9 35 9-43 87-132 (149)
87 COG1724 Predicted RNA binding 41.1 30 0.00066 20.0 2.2 16 26-41 12-27 (66)
88 PHA00673 acetyltransferase dom 40.4 37 0.0008 22.4 2.8 38 2-40 106-146 (154)
89 COG3607 Predicted lactoylgluta 39.0 23 0.0005 23.1 1.6 17 23-39 14-30 (133)
90 PLN02723 3-mercaptopyruvate su 38.0 66 0.0014 23.0 4.1 39 13-63 270-310 (320)
91 cd06587 Glo_EDI_BRP_like This 37.3 57 0.0012 17.4 3.0 23 20-42 6-29 (112)
92 TIGR02383 Hfq RNA chaperone Hf 36.8 69 0.0015 18.1 3.2 27 29-55 20-46 (61)
93 cd01658 Ribosomal_L30 Ribosoma 36.4 14 0.00031 20.1 0.3 21 7-27 20-40 (54)
94 COG3053 CitC Citrate lyase syn 35.8 70 0.0015 23.9 3.9 36 3-42 82-117 (352)
95 cd01716 Hfq Hfq, an abundant, 35.5 71 0.0015 18.0 3.1 27 29-55 16-42 (61)
96 PF09288 UBA_3: Fungal ubiquit 34.6 7.5 0.00016 21.7 -1.0 31 21-51 7-37 (55)
97 COG1923 Hfq Uncharacterized ho 34.4 65 0.0014 19.2 3.0 37 8-54 13-49 (77)
98 COG3473 Maleate cis-trans isom 34.2 59 0.0013 23.1 3.2 35 6-40 112-149 (238)
99 PF13527 Acetyltransf_9: Acety 33.7 9.5 0.00021 22.5 -0.7 11 27-37 116-126 (127)
100 TIGR02990 ectoine_eutA ectoine 32.9 89 0.0019 21.7 3.9 38 5-42 113-153 (239)
101 PRK04323 hypothetical protein; 32.7 62 0.0013 19.7 2.8 31 10-40 14-47 (91)
102 PRK01346 hypothetical protein; 32.5 89 0.0019 22.6 4.1 35 2-41 100-137 (411)
103 TIGR01308 rpmD_bact ribosomal 31.8 19 0.00041 19.7 0.3 20 8-27 21-40 (55)
104 PRK09629 bifunctional thiosulf 30.9 1.2E+02 0.0026 24.1 4.7 45 7-63 215-264 (610)
105 cd08344 MhqB_like_N N-terminal 30.5 59 0.0013 18.7 2.4 20 21-40 11-30 (112)
106 cd08342 HPPD_N_like N-terminal 30.4 1.3E+02 0.0027 18.1 4.1 21 21-41 9-30 (136)
107 cd07267 THT_Oxygenase_N N-term 29.9 69 0.0015 18.5 2.6 19 22-40 13-31 (113)
108 PF14696 Glyoxalase_5: Hydroxy 29.7 28 0.00061 22.5 1.0 42 12-54 10-56 (139)
109 cd07238 Glo_EDI_BRP_like_5 Thi 29.3 59 0.0013 18.5 2.2 24 16-39 3-28 (112)
110 PF04025 DUF370: Domain of unk 28.0 85 0.0018 18.3 2.7 27 6-32 5-32 (73)
111 PF12681 Glyoxalase_2: Glyoxal 27.4 1.2E+02 0.0026 16.8 3.8 19 24-42 7-26 (108)
112 PF13669 Glyoxalase_4: Glyoxal 26.9 1.4E+02 0.0029 17.3 4.0 27 16-42 3-30 (109)
113 TIGR03865 PQQ_CXXCW PQQ-depend 26.8 1.8E+02 0.0039 18.7 5.0 38 13-62 117-157 (162)
114 PRK11493 sseA 3-mercaptopyruva 25.9 79 0.0017 22.0 2.7 38 13-62 232-271 (281)
115 PRK10834 vancomycin high tempe 24.0 1.1E+02 0.0024 21.6 3.2 37 5-41 131-168 (239)
116 COG2897 SseA Rhodanese-related 23.8 1.1E+02 0.0023 22.2 3.1 38 13-62 235-274 (285)
117 PRK10291 glyoxalase I; Provisi 23.8 1E+02 0.0022 18.1 2.7 17 24-40 8-25 (129)
118 PRK05611 rpmD 50S ribosomal pr 23.7 32 0.0007 19.0 0.4 12 28-39 21-32 (59)
119 cd08349 BLMA_like Bleomycin bi 23.7 1E+02 0.0023 17.0 2.6 18 24-41 10-28 (112)
120 PRK00395 hfq RNA-binding prote 23.5 1.4E+02 0.0031 17.7 3.1 27 29-55 24-50 (79)
121 cd01445 TST_Repeats Thiosulfat 23.5 2E+02 0.0042 17.9 5.2 45 5-61 85-137 (138)
122 cd00355 Ribosomal_L30_like Rib 23.3 32 0.0007 18.3 0.3 12 9-20 21-32 (53)
123 PF13354 Beta-lactamase2: Beta 22.8 45 0.00098 21.5 1.0 16 19-34 73-88 (197)
124 PHA00684 hypothetical protein 22.5 40 0.00086 21.9 0.6 53 2-63 65-117 (128)
125 cd01533 4RHOD_Repeat_2 Member 22.3 1.7E+02 0.0037 16.9 3.8 25 13-37 67-93 (109)
126 PF09409 PUB: PUB domain; Int 21.8 1.4E+02 0.003 17.1 2.9 17 24-40 47-63 (87)
127 cd07043 STAS_anti-anti-sigma_f 21.5 1.5E+02 0.0032 16.3 2.9 33 6-38 62-94 (99)
128 PF00903 Glyoxalase: Glyoxalas 21.4 1.5E+02 0.0033 16.5 3.0 30 12-42 2-32 (128)
129 PF10167 NEP: Uncharacterised 21.0 42 0.0009 21.3 0.5 11 21-31 24-34 (118)
130 cd07240 ED_TypeI_classII_N N-t 20.2 1.3E+02 0.0028 16.8 2.5 21 21-41 11-32 (117)
No 1
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.6e-10 Score=77.13 Aligned_cols=54 Identities=39% Similarity=0.584 Sum_probs=51.3
Q ss_pred ChHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeeeeeEEeecc
Q 035156 1 MMMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIFKEVTLELPVE 54 (72)
Q Consensus 1 l~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~ev~~~~~~~ 54 (72)
+|+.||.+.+++.++.++|+.+|.||++||+|++|..+....+|++|++++.++
T Consensus 131 ~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ns~f~~v~Le~~~t 184 (185)
T KOG4135|consen 131 AMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYNSSFPHVTLELDPT 184 (185)
T ss_pred HHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeeeccccceEEecCCC
Confidence 479999999999999999999999999999999999999999999999998764
No 2
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.1e-10 Score=73.56 Aligned_cols=42 Identities=31% Similarity=0.537 Sum_probs=39.2
Q ss_pred ChHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 1 MMMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 1 l~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
++++|+|+.++++++.+.|.++|.+|+++++|+||+.+|..+
T Consensus 119 ~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~ 160 (187)
T COG1670 119 ALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELR 160 (187)
T ss_pred HHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhh
Confidence 478999999999999999999999999999999999999643
No 3
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.01 E-value=7.3e-10 Score=72.50 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=39.0
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
+++|+++.+|++++++.|.++|.+|+++++|+||+.+|+.+
T Consensus 128 ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~ 168 (194)
T PRK10809 128 AIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAK 168 (194)
T ss_pred HHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeec
Confidence 78999999999999999999999999999999999999764
No 4
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.00 E-value=4.1e-10 Score=72.73 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=38.8
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
+++|+++.++++++++.|.++|.+|+++++|+||+.+|+.+
T Consensus 117 l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~ 157 (179)
T PRK10151 117 LIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLK 157 (179)
T ss_pred HHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEec
Confidence 68999999999999999999999999999999999999764
No 5
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.90 E-value=1.7e-09 Score=67.75 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=39.6
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
+++||++.++++++.+.|.+.|.+|+++|+|+||+.+|+.+.+
T Consensus 100 ~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~ 142 (156)
T TIGR03585 100 ALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQG 142 (156)
T ss_pred HHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhh
Confidence 6789999999999999999999999999999999999976544
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.81 E-value=5.3e-09 Score=65.52 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=36.7
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
++++||..+|++++.+.|.+.|.+|+++++|+||+.+|+.+.+
T Consensus 101 l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~ 143 (155)
T PF13420_consen 101 LIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDH 143 (155)
T ss_dssp HHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecE
Confidence 6789999999999999999999999999999999999976544
No 7
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.79 E-value=7.2e-09 Score=67.25 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=38.0
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
+++|+++.++++++++.+...|.+|+++|+|+||+.+|..
T Consensus 107 l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~ 146 (186)
T PRK15130 107 AMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGEL 146 (186)
T ss_pred HHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEE
Confidence 6789999999999999999999999999999999999975
No 8
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.76 E-value=1e-08 Score=62.84 Aligned_cols=36 Identities=39% Similarity=0.647 Sum_probs=32.2
Q ss_pred ChHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCe
Q 035156 1 MMMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFE 36 (72)
Q Consensus 1 l~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~ 36 (72)
++++|+|+.+++++++|.|.++|.+|+++++|+||+
T Consensus 107 ~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 107 LLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp HHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred HHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 368999999999999999999999999999999996
No 9
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.59 E-value=1.3e-07 Score=59.18 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=36.9
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
+++++++..+++++.+.|.++|.+|+++|+|+||+.+|...
T Consensus 103 l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~ 143 (162)
T PRK10140 103 MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGK 143 (162)
T ss_pred HHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecc
Confidence 45777777899999999999999999999999999999754
No 10
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.54 E-value=2.7e-07 Score=58.01 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=34.3
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEI 43 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~ 43 (72)
+++++++..+..++.+.+.++|.+|+++|+|+||+.+|+.+.
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~~ 144 (152)
T PF13523_consen 103 LIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFEF 144 (152)
T ss_dssp HHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEEC
Confidence 467888878999999999999999999999999999998864
No 11
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=5.1e-07 Score=60.54 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=30.9
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
.+|+++++|.|.++|.||++|++++||+++|..
T Consensus 112 ~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~ 144 (169)
T COG1247 112 ALGVRELVAGIESDNLASIALHEKLGFEEVGTF 144 (169)
T ss_pred hCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccc
Confidence 589999999999999999999999999999943
No 12
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.29 E-value=1.2e-06 Score=57.64 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=35.7
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
+++|++ ++|++++.+.|.++|.+|+++|+|+||+.+|+-.
T Consensus 148 ~~~~a~-~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~ 187 (191)
T TIGR02382 148 ALNWCY-ARGLTRLRVATQMGNTAALRLYIRSGANIESTAY 187 (191)
T ss_pred HHHHHH-HcCCCEEEEEeCCCCHHHHHHHHHcCCcccccee
Confidence 567886 5899999999999999999999999999998643
No 13
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.14 E-value=6.6e-06 Score=54.09 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
+++++ ..|++++.+.|.++|.+|+++|+|+||+.+|+.
T Consensus 152 ~~~a~-~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~ 189 (194)
T PRK10975 152 LNWCQ-ARGLTRLRVATQMGNLAALRLYIRSGANIESTA 189 (194)
T ss_pred HHHHH-HcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEE
Confidence 45554 479999999999999999999999999999964
No 14
>PRK10514 putative acetyltransferase; Provisional
Probab=98.13 E-value=4e-06 Score=51.93 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=34.4
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
+++++++. .+++.+.|.+.|.+|+++|+|+||+.+|+..
T Consensus 90 Ll~~~~~~--~~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 90 LVEHALSL--HPELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred HHHHHHHh--ccccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 67888886 4688999999999999999999999999754
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=98.03 E-value=1.2e-05 Score=48.51 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=30.1
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
..+.+++.+.+.++|.+|+++|+|+||+.++..
T Consensus 99 ~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 99 ARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred HCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 369999999999999999999999999988754
No 16
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=97.97 E-value=2.7e-05 Score=48.52 Aligned_cols=41 Identities=20% Similarity=0.455 Sum_probs=33.9
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
++++. ..+++++++.+.+.|.+|+++|+|+||+..+....+
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~ 129 (146)
T PRK09491 89 IDELE-KRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNY 129 (146)
T ss_pred HHHHH-HCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeecc
Confidence 34442 579999999999999999999999999998865443
No 17
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=97.94 E-value=1.9e-05 Score=47.23 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=34.3
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
++++++ .+++++++.|.+.|.+|+++|+|+||+.+++.+.+
T Consensus 80 ~~~~~~-~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 120 (131)
T TIGR01575 80 IDEAKG-RGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNY 120 (131)
T ss_pred HHHHHH-cCCCeEEEEEecccHHHHHHHHHcCCCcccccccc
Confidence 344443 57899999999999999999999999999976554
No 18
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=97.89 E-value=2e-05 Score=44.30 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=28.3
Q ss_pred HHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCe
Q 035156 4 AYAVENFGIHVFRAKIGESNGASLCLFRKLGFE 36 (72)
Q Consensus 4 ~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~ 36 (72)
+++.+ .|...+.+.+.++|.+|+++|+|+||+
T Consensus 52 ~~~~~-~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 52 EWARK-RGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp HHHHH-TTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred hhHHh-cCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 34444 799999999999999999999999996
No 19
>PRK10562 putative acetyltransferase; Provisional
Probab=97.82 E-value=3.5e-05 Score=48.15 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=32.8
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
+++++++. ++++...+..+|.+|+++|+|+||+.+|+.
T Consensus 89 ll~~~~~~--~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 89 LMQHVQQR--YPHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred HHHHHHhh--CCeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 56777774 567888999999999999999999999964
No 20
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.67 E-value=0.0001 Score=43.64 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=22.6
Q ss_pred EEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 14 VFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 14 ~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
...+.+.++|.+|+++|+|+||+.....
T Consensus 56 ~~~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 56 TPFLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp EEEEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred cEEEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 4578899999999999999999998654
No 21
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=97.63 E-value=9.2e-05 Score=47.58 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEE
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDIS 39 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g 39 (72)
++++.. .+..++.+.|.++|.+|+++|+|+||+..+
T Consensus 92 ~~~a~~-~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~ 127 (157)
T TIGR02406 92 LERVAC-ERVRHLETTITPDNQASRALFKALARRRGV 127 (157)
T ss_pred HHHHHh-CCCCEEEEEEcCCCHHHHHHHHHhCcccCC
Confidence 344443 478899999999999999999999998866
No 22
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=97.63 E-value=0.00012 Score=50.37 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
++++.+ .|.+++...+.++|.+|+++|+|+||+..++.-
T Consensus 252 ~~~~~~-~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~~ 290 (292)
T TIGR03448 252 LHHLAA-RGLPAVMLYVEADNEAAVRTYEKLGFTVAEVDV 290 (292)
T ss_pred HHHHHH-CCCCEEEEEEeCCCHHHHHHHHHcCCEEccccc
Confidence 455554 489999999999999999999999999887653
No 23
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=97.54 E-value=0.00023 Score=44.96 Aligned_cols=32 Identities=34% Similarity=0.563 Sum_probs=29.4
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 13 HVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
..+...|.++|.++++||+|+||+..++.+.+
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~y 158 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRKLGFEVVKIRKNY 158 (177)
T ss_pred ceEEEEEecCChHHHHHHHHcCCEEEeeehhh
Confidence 89999999999999999999999999977643
No 24
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.52 E-value=0.00013 Score=50.58 Aligned_cols=36 Identities=17% Similarity=0.005 Sum_probs=32.7
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
..|++++++.+.+.|.+|+++|+|+||+.+|+....
T Consensus 214 ~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~ 249 (266)
T TIGR03827 214 EKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNN 249 (266)
T ss_pred HCCCcEEEeehhhcchhHHHHHHHcCCccccEEeec
Confidence 479999999999999999999999999999977543
No 25
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=97.43 E-value=0.00026 Score=44.16 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.7
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEE
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDIS 39 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g 39 (72)
++++|++ .|++++.+.|.++|. ++|+|+||+.+|
T Consensus 110 ~~~~a~~-~g~~~i~l~~~~~N~---~~y~k~GF~~~g 143 (150)
T PLN02706 110 LTEHARS-AGCYKVILDCSEENK---AFYEKCGYVRKE 143 (150)
T ss_pred HHHHHHH-cCCCEEEEEeccccH---HHHHHCcCEEeh
Confidence 4677764 799999999999996 599999999988
No 26
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=97.43 E-value=0.00023 Score=43.69 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=28.4
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEE
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDIS 39 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g 39 (72)
..|.+.+...+...|.+|+++|+|+||+..+
T Consensus 107 ~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 107 QAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred HcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 3699999999999999999999999998875
No 27
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=97.13 E-value=0.00093 Score=44.86 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=32.4
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
..|...++..+...|.+|.+||+++||+..++...+
T Consensus 115 ~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~Y 150 (165)
T KOG3139|consen 115 SRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRY 150 (165)
T ss_pred HCCCcEEEEeccccchHHHHHHHhcCceEecceeEE
Confidence 468999999999999999999999999999987543
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=96.89 E-value=0.0032 Score=48.29 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=31.9
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
..|..++...|..+|.+|+++|+|+||+..+.....
T Consensus 186 ~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~~ 221 (547)
T TIGR03103 186 SRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFALK 221 (547)
T ss_pred HCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEEe
Confidence 579999999999999999999999999998865443
No 29
>PTZ00330 acetyltransferase; Provisional
Probab=96.77 E-value=0.0038 Score=38.34 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
++++.+ .++++++.. .|.+|+++|+|+||+....
T Consensus 108 ~~~a~~-~~~~~l~l~---~n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 108 CEIARS-SGCYKVILD---CTEDMVAFYKKLGFRACER 141 (147)
T ss_pred HHHHHH-CCCCEEEEe---cChHHHHHHHHCCCEEece
Confidence 344433 577777554 4999999999999998773
No 30
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.47 E-value=0.0042 Score=44.25 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=29.8
Q ss_pred hHHHHHh---hcCceEEEEEeC--CCCHHHHHHHHhcCCeEE
Q 035156 2 MMAYAVE---NFGIHVFRAKIG--ESNGASLCLFRKLGFEDI 38 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~--~~N~~Si~LfeklGF~~~ 38 (72)
||+++.+ ..|.+++++.+. +.|.+++++|+|+||+.+
T Consensus 278 Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 278 MLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 4555555 479999998775 589999999999999865
No 31
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=96.13 E-value=0.018 Score=39.57 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=30.6
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
|++++.+... .++...+..+|.+++++|+|+||+..+..
T Consensus 91 Ll~~~~~~~~-~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~ 129 (292)
T TIGR03448 91 LIRALLAKGG-GRLRVWAHGDLPAARALASRLGLVPTREL 129 (292)
T ss_pred HHHHHHHhcc-CceEEEEcCCCHHHHHHHHHCCCEEccEE
Confidence 5666666543 56777788899999999999999988753
No 32
>PRK09831 putative acyltransferase; Provisional
Probab=95.62 E-value=0.035 Score=34.66 Aligned_cols=36 Identities=8% Similarity=0.267 Sum_probs=24.9
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
+++++.+...- + .+. .|.+++++|+|+||+.+|+.+
T Consensus 93 Ll~~~~~~~~~--l--~v~-~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 93 LLKPLIKSESE--L--TVD-ASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred HHHHHHHHhhh--e--Eee-cchhhHHHHHHCCCEEeeccc
Confidence 45555554322 2 333 368999999999999999864
No 33
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=95.57 E-value=0.025 Score=31.81 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=26.7
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeE
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFED 37 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~ 37 (72)
|++++.+..+...++..+ |..+.++|+|+||++
T Consensus 47 ll~~~~~~~~~~~i~l~~---~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 47 LLNYLLEKAKSKKIFLFT---NPAAIKFYEKLGFEE 79 (79)
T ss_dssp HHHHHHHHHTCSEEEEEE---EHHHHHHHHHTTEEE
T ss_pred HHHHHHHHcCCCcEEEEE---cHHHHHHHHHCcCCC
Confidence 577777777777777655 789999999999985
No 34
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=95.47 E-value=0.034 Score=32.66 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=21.8
Q ss_pred hHHHHHhhc--CceEEEEEeCCCCHHHHHHHHhcCC
Q 035156 2 MMAYAVENF--GIHVFRAKIGESNGASLCLFRKLGF 35 (72)
Q Consensus 2 ~l~ya~~~l--~l~~i~a~i~~~N~~Si~LfeklGF 35 (72)
+++++.+.+ ++.++.+. .|.+|+++|+|+||
T Consensus 85 Ll~~~~~~~~~~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 85 LLDAAEKEAKDGIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp HHHHHHHHHTTTCEEEEEE---C-HHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCCcEEEEE---eCHHHHHHHHhCCC
Confidence 344454432 77777776 99999999999998
No 35
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=94.89 E-value=0.015 Score=40.13 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.9
Q ss_pred cCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 10 FGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 10 l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
-++.++.+.|+.+|.+|+.+|+++||...-.+
T Consensus 152 ~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~s 183 (202)
T KOG2488|consen 152 RHMRKVMLTVFSENIRALGFYHRLGFVVDEES 183 (202)
T ss_pred HHhhhheeeeecccchhHHHHHHcCcccCCCC
Confidence 35678999999999999999999999876644
No 36
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=94.77 E-value=0.046 Score=37.28 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=35.6
Q ss_pred hHHHHHhh---cC-ceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 2 MMAYAVEN---FG-IHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 2 ~l~ya~~~---l~-l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
+|+++.+. .+ .++++..+-..|..++.+|++.||+..++...|
T Consensus 110 Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~ 156 (187)
T KOG3138|consen 110 LLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNY 156 (187)
T ss_pred HHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccc
Confidence 45555552 33 577999999999999999999999999998877
No 37
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=94.62 E-value=0.17 Score=34.34 Aligned_cols=33 Identities=18% Similarity=-0.025 Sum_probs=30.3
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
.+|+.++...++++|.||.+.-+++|=..+.+.
T Consensus 128 ~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~ 160 (174)
T COG3981 128 ELGIKKVLVTCDKDNIASRKVIEANGGILENEF 160 (174)
T ss_pred HcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEE
Confidence 489999999999999999999999998888754
No 38
>PRK07757 acetyltransferase; Provisional
Probab=94.02 E-value=0.078 Score=32.87 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=25.7
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeee
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEI 43 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~ 43 (72)
++++. ..|++++++.+. +.++|+|+||+..+....
T Consensus 91 ~~~a~-~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~~~~ 125 (152)
T PRK07757 91 LEEAR-ELGVKRVFALTY-----QPEFFEKLGFREVDKEAL 125 (152)
T ss_pred HHHHH-hCCCCeEEEEeC-----cHHHHHHCCCEEcccccC
Confidence 44553 468999887664 468999999999986443
No 39
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=93.38 E-value=0.29 Score=34.91 Aligned_cols=31 Identities=29% Similarity=0.183 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 11 GIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 11 ~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
|+.-.|.. .|.+|++|-+|+||+....-..|
T Consensus 221 ~l~P~WDc---~N~~S~~lA~kLGf~~~~~Y~~Y 251 (265)
T PF12746_consen 221 GLYPSWDC---HNLASIALAEKLGFHFDFEYTAY 251 (265)
T ss_dssp T-EEE-EE---SSHHHHHHHHHCT--EEEEEEEE
T ss_pred CCCcCeeC---CCHHHHHHHHHcCCcccceeeee
Confidence 55555654 69999999999999999977766
No 40
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=93.30 E-value=0.15 Score=36.72 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.8
Q ss_pred EeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 18 KIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 18 ~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
.+..+|..|+++|+|+||+..|..
T Consensus 240 ~~~~~N~~A~~iY~riGF~~~g~~ 263 (268)
T COG3393 240 FVNSDNPVARRIYQRIGFREIGEF 263 (268)
T ss_pred EEecCCHHHHHHHHHhCCeecceE
Confidence 445899999999999999999943
No 41
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=93.21 E-value=0.087 Score=32.14 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.5
Q ss_pred cCceEEEEEeCCCCHHHHHHHHhcCCeEE
Q 035156 10 FGIHVFRAKIGESNGASLCLFRKLGFEDI 38 (72)
Q Consensus 10 l~l~~i~a~i~~~N~~Si~LfeklGF~~~ 38 (72)
+|+. +++.|..+|.+|+|+.+++||...
T Consensus 51 ~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~ 78 (89)
T PF08444_consen 51 LGFP-FYGHVDEDNEASQRLSKSLGFIFM 78 (89)
T ss_pred CCCC-eEeehHhccHHHHHHHHHCCCeec
Confidence 4443 678899999999999999999864
No 42
>PRK10314 putative acyltransferase; Provisional
Probab=92.44 E-value=0.19 Score=32.17 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=20.5
Q ss_pred CceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 11 GIHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 11 ~l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
+...++.. .|..+.++|+|+||+..|.
T Consensus 108 ~~~~i~L~---a~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 108 PDKPVYLG---AQAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred CCCcEEEe---hHHHHHHHHHHCCCEECCC
Confidence 45555543 3678899999999999885
No 43
>PRK07922 N-acetylglutamate synthase; Validated
Probab=92.31 E-value=0.26 Score=31.96 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
+++|. ..|..++++.+. ++++|+|+||+..+..
T Consensus 96 ~~~a~-~~g~~~l~~~~~-----~~~fY~k~GF~~~~~~ 128 (169)
T PRK07922 96 LDVAR-ELGLSRVFVLTF-----EVEFFARHGFVEIDGT 128 (169)
T ss_pred HHHHH-HcCCCEEEEEec-----cHHHHHHCCCEECccc
Confidence 34444 579999988765 3789999999997744
No 44
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=91.46 E-value=0.51 Score=31.70 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=32.8
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
++++.-+ .+|..++.=.|..-|.+||.||+|.|.+..+.
T Consensus 105 Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 105 LLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 3444444 58999999999999999999999999988775
No 45
>PRK05279 N-acetylglutamate synthase; Validated
Probab=91.19 E-value=0.27 Score=36.44 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=27.1
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
|++++.+ ..|++++... |.+++++|+|+||+..|+..
T Consensus 380 Ll~~l~~~a~~~g~~~l~l~----~~~a~~fY~k~GF~~~g~~~ 419 (441)
T PRK05279 380 LLKRIEQRARQLGLKRLFVL----TTRTAHWFLERGFVPVDVDD 419 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEe----cchHHHHHHHCcCEECChhh
Confidence 4555555 3678887653 45789999999999999743
No 46
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=90.94 E-value=0.42 Score=32.36 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCeEEEEeee
Q 035156 13 HVFRAKIGESNGASLCLFRKLGFEDISYSEI 43 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~ 43 (72)
-=+...|...|+.||.+|+|+|+..-.++--
T Consensus 104 ~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~ 134 (173)
T KOG3234|consen 104 YFVDLFVRVSNQIAIDMYKKLGYSVYRTVIE 134 (173)
T ss_pred heeeeeeeccchhHHHHHHhcCceEEEeeee
Confidence 3455678899999999999999998876533
No 47
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=90.72 E-value=0.29 Score=33.85 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.3
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
.-|+.+|+|++...+ ..+|++.||..+|+.+-|
T Consensus 36 ~~~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~ 68 (266)
T TIGR03827 36 KEGYTKIIAKVPGSD---KPLFEERGYLEEAKIPGY 68 (266)
T ss_pred HcCCcEEEEEccHHH---HHHHHHCCCeEEEecccc
Confidence 468999999999886 889999999999988776
No 48
>PRK13688 hypothetical protein; Provisional
Probab=90.56 E-value=0.42 Score=31.13 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=23.3
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
+++++.+ .++. + .+.+.| .|+++|+|+||+..++.
T Consensus 100 Ll~~a~~-~~~~-~--~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 100 LVDFAKS-FQLP-I--KTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred HHHHHHH-hCCe-E--EEEecc-chHHHHHhCCCEEeEEe
Confidence 4555554 2333 2 234556 57899999999999976
No 49
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=90.49 E-value=0.55 Score=33.77 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=26.5
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEE
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDIS 39 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g 39 (72)
|++++.+ +.|+.+++..+.+.| ..+|+|+||+..+
T Consensus 46 Ll~~l~~~a~~~g~~~i~L~t~~~~---~~fYek~GF~~~~ 83 (297)
T cd02169 46 IVSELINKAYEEGIFHLFLFTKPKN---AKFFRGLGFKELA 83 (297)
T ss_pred HHHHHHHHHHHCCCCEEEEEEcccH---HHHHHHCCCEEec
Confidence 3444444 358899988887655 5899999999999
No 50
>PHA01807 hypothetical protein
Probab=90.11 E-value=0.71 Score=30.07 Aligned_cols=32 Identities=9% Similarity=0.179 Sum_probs=25.9
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhc
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKL 33 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~Lfekl 33 (72)
||+.+.+ ..|...+...+.++|.++++||++.
T Consensus 102 Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 102 FLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 3444444 3589999999999999999999975
No 51
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=89.04 E-value=0.89 Score=33.20 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=25.9
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
..|..++...+.+.| .++|+|+||...+..+
T Consensus 81 ~~G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~ 111 (332)
T TIGR00124 81 ELGRFHLFIFTKPEY---AALFEYCGFKTLAEAK 111 (332)
T ss_pred HcCCCEEEEEECchH---HHHHHHcCCEEeeeec
Confidence 358899998888777 3689999999999765
No 52
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=88.58 E-value=0.85 Score=35.30 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=27.3
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
+|+++.+ ..|..++.. ..|..++++|+|+||+..|.
T Consensus 478 Ll~~ae~~Ar~~G~~~i~v---~s~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 478 LLEEAERIAAEEGSEKILV---ISGIGVREYYRKLGYELDGP 516 (522)
T ss_pred HHHHHHHHHHHCCCCEEEE---eeCchHHHHHHHCCCEEEcc
Confidence 4455544 358888875 33899999999999998884
No 53
>PLN02825 amino-acid N-acetyltransferase
Probab=88.49 E-value=0.67 Score=35.88 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=28.2
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
||+++.+ ..|++++.+.+ +.++++|+|+||+..+..
T Consensus 453 LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~~ 491 (515)
T PLN02825 453 LLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSIE 491 (515)
T ss_pred HHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeChh
Confidence 4556555 46999998876 357899999999999864
No 54
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=87.57 E-value=0.66 Score=34.41 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=25.3
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
||+++.+ ..|.+++++. ..| ++++|+|+||+..|+.
T Consensus 368 Ll~~l~~~A~~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 368 LLAHIEDRARQMGISRLFVL--TTR--TGHWFRERGFQTASVD 406 (429)
T ss_pred HHHHHHHHHHHcCCCEEEEe--ecc--hHHHHHHCCCEECChh
Confidence 4455555 3578887643 344 5799999999999974
No 55
>PHA00432 internal virion protein A
Probab=87.02 E-value=0.63 Score=30.43 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=26.2
Q ss_pred ceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 12 IHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 12 l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
...++=.|..+|..+||+++++||+....
T Consensus 93 yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 93 YPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 56788899999999999999999998875
No 56
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=86.78 E-value=1.6 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.7
Q ss_pred cCceEEEEEeC--CCCHHHHHHHHhcCCeEEEEeeee
Q 035156 10 FGIHVFRAKIG--ESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 10 l~l~~i~a~i~--~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
-|...+.+.|. |.|.+|-.+.-.+||.++|...+-
T Consensus 116 agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ih 152 (167)
T COG3818 116 AGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIH 152 (167)
T ss_pred cCCceEEEEecCCCCChHHHHHhhhcCceEccceEEe
Confidence 36777877775 669999999999999999976553
No 57
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=86.40 E-value=0.71 Score=35.93 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=27.3
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
|++++.+ ..|..+++..+ .++++|+|+||+..++....
T Consensus 548 Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~~~~ 588 (614)
T PRK12308 548 LVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKSLLP 588 (614)
T ss_pred HHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcccCC
Confidence 4455544 46888888654 24699999999999976554
No 58
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=85.57 E-value=1.1 Score=27.23 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCHHHHHHHHhcCCeEE
Q 035156 12 IHVFRAKIGESNGASLCLFRKLGFEDI 38 (72)
Q Consensus 12 l~~i~a~i~~~N~~Si~LfeklGF~~~ 38 (72)
..+++=.|..+|..+||+.+++|++.-
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~ 82 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFH 82 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEc
Confidence 466888999999999999999999843
No 59
>PHA01733 hypothetical protein
Probab=80.39 E-value=1.3 Score=29.50 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=25.6
Q ss_pred ceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 12 IHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 12 l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
...++=.|+..|..++|+++.+||+.....
T Consensus 104 Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~ 133 (153)
T PHA01733 104 YDLLWNIVDKRNLVHRKLLRKLGFKGLRYV 133 (153)
T ss_pred ccHHHHhHhcccHHHHHHHHHcCceeeccc
Confidence 455677899999999999999999988754
No 60
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=80.02 E-value=0.89 Score=33.63 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=30.4
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeee
Q 035156 13 HVFRAKIGESNGASLCLFRKLGFEDISYSEIFKE 46 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e 46 (72)
...++.+.++-.|+.+|+++-||+..|.+.+|+=
T Consensus 220 q~vIG~vH~~t~pA~~lLe~EGF~~~~yVDIFDg 253 (336)
T TIGR03244 220 QDVIGRVHEDTRPALAMLESEGFRYQGYVDIFDA 253 (336)
T ss_pred HHHhCCcCCCCHHHHHHHHHcCCccCCceeccCC
Confidence 3567788999999999999999999999999975
No 61
>PRK10456 arginine succinyltransferase; Provisional
Probab=79.47 E-value=0.92 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeee
Q 035156 13 HVFRAKIGESNGASLCLFRKLGFEDISYSEIFKE 46 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e 46 (72)
..+++.+.++-.|+.+|+++-||+..|.+.+|+=
T Consensus 222 q~vIG~vH~~t~pA~~lLe~EGF~~~~yVDIFDg 255 (344)
T PRK10456 222 QAVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDG 255 (344)
T ss_pred HHHhCCcCCCCHHHHHHHHHcCCccCCceeccCC
Confidence 4567788999999999999999999999999976
No 62
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=78.59 E-value=0.93 Score=33.55 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=30.4
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeee
Q 035156 13 HVFRAKIGESNGASLCLFRKLGFEDISYSEIFKE 46 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e 46 (72)
..+++.+.++-.|+.+|+++-||+..|.+.+|+=
T Consensus 221 q~vIG~vH~~t~pA~~lLe~EGF~~~~yVDIFDg 254 (336)
T TIGR03245 221 QDAIGQPHPHARDNCQILNREGFEMDRYIDIFDG 254 (336)
T ss_pred HHHhCCcCCCCHHHHHHHHHcCCccCCcccccCC
Confidence 3567788999999999999999999999999975
No 63
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=78.21 E-value=0.97 Score=33.44 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeee
Q 035156 13 HVFRAKIGESNGASLCLFRKLGFEDISYSEIFKE 46 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e 46 (72)
..+++.+.++-.|+.+|+++-||+..|.+.+|+=
T Consensus 220 q~vIG~vH~~t~pA~~lLe~EGF~~~~yVDIFDg 253 (335)
T TIGR03243 220 QDVIGQVHPDTRPARAMLESEGFRYQGYVDIFDA 253 (335)
T ss_pred HHHhCCcCCCCHHHHHHHHHcCCCcCCcccccCC
Confidence 4567788999999999999999999999999976
No 64
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=75.63 E-value=3.9 Score=27.20 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.5
Q ss_pred HHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 3 MAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 3 l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
+++... .+|+.++++-+. -|...|+++||+..-..
T Consensus 87 l~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~~ 124 (153)
T COG1246 87 LERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDKD 124 (153)
T ss_pred HHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECccc
Confidence 444444 589999999875 67899999999988754
No 65
>PHA02769 hypothetical protein; Provisional
Probab=74.88 E-value=2.8 Score=27.29 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.3
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeee
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIF 44 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~ 44 (72)
.-|+.-+|.-=+|+. |.+||.|.||++.|....-
T Consensus 110 ~dg~evlwtlgfpdh--snaly~kagfk~vg~tsrt 143 (154)
T PHA02769 110 KDGFEVLWTLGFPDH--SNALYKKAGFKLVGQTSRT 143 (154)
T ss_pred cCCeEEEEEecCCCc--chhHHhhhhhhHhcccccc
Confidence 457888888888876 7789999999999965443
No 66
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=72.94 E-value=1.2 Score=32.93 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEEEeCCCCHHHHHHHHhcCCeEEEEeeeeee-eeEEe
Q 035156 15 FRAKIGESNGASLCLFRKLGFEDISYSEIFKE-VTLEL 51 (72)
Q Consensus 15 i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e-v~~~~ 51 (72)
+++.+.++-.|+.+|+++-||+..|.+.+|+= .+++=
T Consensus 226 vIG~vH~~t~pA~~lLe~EGF~~~~yVDIFDgGP~lea 263 (342)
T PF04958_consen 226 VIGQVHPDTRPALRLLESEGFRYDGYVDIFDGGPTLEA 263 (342)
T ss_dssp HTT-B-GGGHHHHHHHHHHT-EEEEEE-TTT--EEEEE
T ss_pred HhCCcCcccHHHHHHHHHcCCCcCCcccccCCCceEEE
Confidence 34567788899999999999999999999986 44443
No 67
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=65.10 E-value=5.8 Score=29.33 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=33.0
Q ss_pred EEEEeCCCCHHHHHHHHhcCCeEEEEeeeeee-eeEEeecc
Q 035156 15 FRAKIGESNGASLCLFRKLGFEDISYSEIFKE-VTLELPVE 54 (72)
Q Consensus 15 i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e-v~~~~~~~ 54 (72)
.+..+.++-.|+.+++++-||+..|.+.+|+= .+++-.++
T Consensus 224 viGqVHp~t~~A~a~Le~EGF~~~gYVDIFDgGPTle~~~d 264 (336)
T COG3138 224 VIGQVHPDTAPARAVLEKEGFRYRGYVDIFDGGPTLECRID 264 (336)
T ss_pred HhCCcCCCchHHHHHHHHhCccccCeeEeecCCceeeeccc
Confidence 35678899999999999999999999999987 55554433
No 68
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=62.98 E-value=12 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.1
Q ss_pred hcCceEEEEEeCCCCHHHHHHHHhcCCeEEE
Q 035156 9 NFGIHVFRAKIGESNGASLCLFRKLGFEDIS 39 (72)
Q Consensus 9 ~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g 39 (72)
.+|--++...+.+.|. .+|+|+||..-+
T Consensus 116 ~lgcYKi~LdC~~~nv---~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 116 SLGCYKIILDCDPKNV---KFYEKCGYSNAG 143 (150)
T ss_pred hcCcEEEEEecchhhh---hHHHHcCccccc
Confidence 5899999999999996 599999999877
No 69
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=61.24 E-value=16 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=28.6
Q ss_pred cCceEEEEEeCCCCHHHHHHHH-hcCCeEEEEeee
Q 035156 10 FGIHVFRAKIGESNGASLCLFR-KLGFEDISYSEI 43 (72)
Q Consensus 10 l~l~~i~a~i~~~N~~Si~Lfe-klGF~~~g~~~~ 43 (72)
.+..-+-..|...|.+++.||+ .+||+.......
T Consensus 104 ~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~k 138 (193)
T KOG3235|consen 104 YEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPK 138 (193)
T ss_pred hcceEEEEeeecccHHHHHhhhhccceEEeecccc
Confidence 4567777889999999999999 999999886543
No 70
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.50 E-value=11 Score=29.74 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=31.5
Q ss_pred hHHHHHh---hcCceEEEEEeCCC--CHHHHHHHHhcCCeEEEE
Q 035156 2 MMAYAVE---NFGIHVFRAKIGES--NGASLCLFRKLGFEDISY 40 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~--N~~Si~LfeklGF~~~g~ 40 (72)
||.++++ ..|+++|.+.=-|. |.|--.+||++||+..+.
T Consensus 507 l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 507 LMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred HHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 5666776 46999998876654 999999999999997763
No 71
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=57.46 E-value=35 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.451 Sum_probs=21.2
Q ss_pred EEEeCCCCHHHHHHHHhcCCeEEEEeeeeee
Q 035156 16 RAKIGESNGASLCLFRKLGFEDISYSEIFKE 46 (72)
Q Consensus 16 ~a~i~~~N~~Si~LfeklGF~~~g~~~~~~e 46 (72)
.+.|. +=..++.+++++||...+++...++
T Consensus 82 E~~v~-D~~~~~~il~~LGF~~~~~VkK~R~ 111 (178)
T COG1437 82 EIEVS-DVEKALEILKRLGFKEVAVVKKTRE 111 (178)
T ss_pred EEEeC-CHHHHHHHHHHcCCceeeEEEEEEE
Confidence 34444 3356789999999999997755444
No 72
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=55.28 E-value=12 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=17.8
Q ss_pred EEeCCCC-HHHHHHHHhcCCeEEEEe
Q 035156 17 AKIGESN-GASLCLFRKLGFEDISYS 41 (72)
Q Consensus 17 a~i~~~N-~~Si~LfeklGF~~~g~~ 41 (72)
..+...| .+|++.|+.+||+.....
T Consensus 5 ~~l~v~Dl~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 5 PFIPAKDFAESKQFYQALGFELEWEN 30 (113)
T ss_pred eccccccHHHHHHHHHHhCCeeEecC
Confidence 3344344 578999999999987654
No 73
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.66 E-value=12 Score=22.03 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHhcCCeEEE
Q 035156 21 ESNGASLCLFRKLGFEDIS 39 (72)
Q Consensus 21 ~~N~~Si~LfeklGF~~~g 39 (72)
.+=.+|+++|+.+||+...
T Consensus 9 ~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 9 KDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CCHHHHHHHHHHCCCEEcc
Confidence 4457899999999999764
No 74
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=53.97 E-value=46 Score=19.95 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHhcCCeEEEEeeeeeeeeEEeecc--hhHHHHHHHHhhccccCC
Q 035156 20 GESNGASLCLFRKLGFEDISYSEIFKEVTLELPVE--NAKREELLVLTGNVVRHP 72 (72)
Q Consensus 20 ~~~N~~Si~LfeklGF~~~g~~~~~~ev~~~~~~~--~~~~~~~~~~~~~~~~~~ 72 (72)
+|.=.+-.+-+..+||..+..+++-+-+++.+.-+ ....+-+..-|...++.|
T Consensus 16 DPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~~~e~a~~~v~~mcekLLaNp 70 (83)
T COG1828 16 DPEGETIEKALHRLGYNEVSDVRVGKVIELELDAESEEKAEEEVKEMCEKLLANP 70 (83)
T ss_pred CchhHHHHHHHHHcCCcccceeeeeeEEEEEecCcchhHHHHHHHHHHHHHhCCC
Confidence 46666777889999999999888888888877663 233345555555454444
No 75
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=53.18 E-value=17 Score=22.47 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=19.5
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHh---cCCeEEE
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRK---LGFEDIS 39 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~Lfek---lGF~~~g 39 (72)
+|++|-+.|+..++++.+..+...--.|.+. +||....
T Consensus 46 LLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~ 86 (108)
T PF02100_consen 46 LLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVT 86 (108)
T ss_dssp HHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE-
T ss_pred HHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecC
Confidence 6899999999999999998776554445554 5555544
No 76
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=50.39 E-value=41 Score=22.38 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=33.4
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe--eeee-e--eeEEeecchhHHHH
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYS--EIFK-E--VTLELPVENAKREE 60 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~--~~~~-e--v~~~~~~~~~~~~~ 60 (72)
++||.+ .|+.++++.+. .+-.+++.++||...-.- ...+ + +-..+.++++-.+.
T Consensus 122 ~e~a~~-~gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~~~~~~~~~~~a~~i~v~~~~~~~ 180 (182)
T PF00765_consen 122 VEFALS-NGIRHIVGVVD---PAMERILRRAGWPVRRLGPPRSIGGERVVALLIPVSQETLKR 180 (182)
T ss_dssp HHHHHC-TT-SEEEEEEE---HHHHHHHHHCT-EEEESSEEEEETTEEEEEEEEE-SHHHHHH
T ss_pred HHHHHH-CCCCEEEEEEC---hHHHHHHHHcCCceEECCCCeeeCCeEEEEEEEECCHHHHHh
Confidence 445544 59999999885 668999999999877532 2222 2 55566666655543
No 77
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=49.25 E-value=28 Score=22.81 Aligned_cols=38 Identities=3% Similarity=-0.024 Sum_probs=28.6
Q ss_pred EEEEEeCC--CCHHHHHHHHhcCCeEEEEeeeeeeeeEEeecchhHHHHHHH
Q 035156 14 VFRAKIGE--SNGASLCLFRKLGFEDISYSEIFKEVTLELPVENAKREELLV 63 (72)
Q Consensus 14 ~i~a~i~~--~N~~Si~LfeklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~~ 63 (72)
.|+..|.+ .-.-|-+...++||+.++ .+ .++|.+|.+.
T Consensus 91 eiIf~C~SG~Rs~~A~~~l~s~Gyknv~---ny---------~Gs~~~W~~k 130 (136)
T KOG1530|consen 91 EIIFGCASGVRSLKATKILVSAGYKNVG---NY---------PGSYLAWVDK 130 (136)
T ss_pred cEEEEeccCcchhHHHHHHHHcCccccc---cc---------CccHHHHHHc
Confidence 45544544 456677899999999998 33 8999999875
No 78
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=48.15 E-value=21 Score=18.71 Aligned_cols=14 Identities=36% Similarity=0.702 Sum_probs=11.1
Q ss_pred HHHHHhcCCeEEEE
Q 035156 27 LCLFRKLGFEDISY 40 (72)
Q Consensus 27 i~LfeklGF~~~g~ 40 (72)
+++++++||.....
T Consensus 5 ~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 5 IKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHTT-EEEEE
T ss_pred HHHHHHCCCEEecC
Confidence 68999999999864
No 79
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=47.38 E-value=51 Score=21.20 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=25.6
Q ss_pred CceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 11 GIHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 11 ~l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
+..-+++++..+|..-..++++.||+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 32 (194)
T PRK10975 3 AFSLVQAKVAASDTALLDALQQLGFQLVEG 32 (194)
T ss_pred ccceEEEEechhhhHHHHHHHhcCCEeeee
Confidence 345688999999999999999999996654
No 80
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=46.97 E-value=23 Score=20.68 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=19.3
Q ss_pred EEEEeCCCC-HHHHHHHHhcCCeEEEEee
Q 035156 15 FRAKIGESN-GASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 15 i~a~i~~~N-~~Si~LfeklGF~~~g~~~ 42 (72)
+++.+...| .+|+++|+++||+...+..
T Consensus 4 ~~~~l~v~Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 4 TIPNLPSRDLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred ccceeEcCCHHHHHHHHHHcCCEEEecCC
Confidence 444444444 5799999999999876543
No 81
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=45.69 E-value=38 Score=21.21 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=17.9
Q ss_pred EeCCCCHHHHHHHH-hcCCeEEEEe
Q 035156 18 KIGESNGASLCLFR-KLGFEDISYS 41 (72)
Q Consensus 18 ~i~~~N~~Si~Lfe-klGF~~~g~~ 41 (72)
..-.+-.+|+++|+ .+||+...+.
T Consensus 8 irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 8 FKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEeCCHHHHHHHHHHhcCCEEEeee
Confidence 34466789999996 6999976533
No 82
>PF08809 DUF1799: Phage related hypothetical protein (DUF1799); InterPro: IPR014915 This entry is represented by the Bacteriophage TLS, TfmB. The characteristics of the protein distribution suggest prophage matches.
Probab=43.86 E-value=18 Score=21.51 Aligned_cols=19 Identities=16% Similarity=0.189 Sum_probs=16.4
Q ss_pred EEEeCCCCHHHHHHHHhcC
Q 035156 16 RAKIGESNGASLCLFRKLG 34 (72)
Q Consensus 16 ~a~i~~~N~~Si~LfeklG 34 (72)
...|.|+|.+|.++|.+++
T Consensus 15 ~~evwPen~~A~~~f~~~~ 33 (83)
T PF08809_consen 15 EVEVWPENWPAVELFLAMQ 33 (83)
T ss_pred ccccCcccHHHHHHHHHcc
Confidence 4578999999999999875
No 83
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=43.01 E-value=37 Score=19.61 Aligned_cols=20 Identities=30% Similarity=0.482 Sum_probs=15.6
Q ss_pred eCCCCHHHHHHHHhcCCeEE
Q 035156 19 IGESNGASLCLFRKLGFEDI 38 (72)
Q Consensus 19 i~~~N~~Si~LfeklGF~~~ 38 (72)
.-.+=.+|+++|+++||+..
T Consensus 7 ~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 7 VVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred EeccHHHHHHHHHHhCceec
Confidence 33555789999999999764
No 84
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=42.87 E-value=1e+02 Score=20.80 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=36.0
Q ss_pred HHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEE--EEeeeeee---eeEEeecchhHHHHHH
Q 035156 4 AYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDI--SYSEIFKE---VTLELPVENAKREELL 62 (72)
Q Consensus 4 ~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~--g~~~~~~e---v~~~~~~~~~~~~~~~ 62 (72)
+|+.. .|++++++.+.+ +-.+++.++|+... |.....+. +-..+.++++..+.+.
T Consensus 133 ~~a~~-~Gi~~~~~v~~~---~~~r~l~r~G~~~~~lG~~~~~g~~~~~a~~i~v~~~~~~~~r 192 (207)
T PRK13834 133 EWSMA-NGYTEIVTATDL---RFERILARAGWPMQRLGEPKAIGNTMAVAGILPADRDSFERVR 192 (207)
T ss_pred HHHHH-CCCCEEEEEECH---HHHHHHHHcCCCeEECCCCEEECCeEEEEEEEECCHHHHHhhc
Confidence 34433 589999998877 56789999997654 33333333 4555667777766553
No 85
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=41.63 E-value=35 Score=20.39 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=17.9
Q ss_pred EEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 17 AKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 17 a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
+..-.+=.+|++.|+++||+..+.
T Consensus 8 ~i~v~Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 8 GIVVRDLEAAIAFFLELGLELEGR 31 (142)
T ss_pred EEEeCCHHHHHHHHHHcCCEEccc
Confidence 334456678999999999987654
No 86
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=41.57 E-value=93 Score=20.61 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=30.8
Q ss_pred hcCceEEEEEe-----------CCCCHHHHHHHHhcCCeEEEEeee
Q 035156 9 NFGIHVFRAKI-----------GESNGASLCLFRKLGFEDISYSEI 43 (72)
Q Consensus 9 ~l~l~~i~a~i-----------~~~N~~Si~LfeklGF~~~g~~~~ 43 (72)
.+|+..+...+ ++.-.++|+-+.+.|++.....++
T Consensus 87 ~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~Dv 132 (149)
T PTZ00129 87 ELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDV 132 (149)
T ss_pred HcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEec
Confidence 58999999999 799999999999999998876544
No 87
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=41.13 E-value=30 Score=20.00 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHhcCCeEEEEe
Q 035156 26 SLCLFRKLGFEDISYS 41 (72)
Q Consensus 26 Si~LfeklGF~~~g~~ 41 (72)
.++++|+.||..+.+.
T Consensus 12 ~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 12 VIKALEKDGFQLVRQK 27 (66)
T ss_pred HHHHHHhCCcEEEEee
Confidence 5799999999999864
No 88
>PHA00673 acetyltransferase domain containing protein
Probab=40.37 E-value=37 Score=22.36 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=28.2
Q ss_pred hHHHHHh---hcCceEEEEEeCCCCHHHHHHHHhcCCeEEEE
Q 035156 2 MMAYAVE---NFGIHVFRAKIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 2 ~l~ya~~---~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
|++++.+ ..|.++++.. .+.+...+.+|.+.|+++..+
T Consensus 106 Ll~~A~~~Ar~~Gc~~lyis-~~p~~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 106 LLRATEALARDLGATGLYVS-GPTEGRLVQLLPAAGYRETNR 146 (154)
T ss_pred HHHHHHHHHHHCCCCEEEEe-cCCCccchHHHHhCCchhhch
Confidence 5667766 4688888864 344556789999999998764
No 89
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=38.97 E-value=23 Score=23.13 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.6
Q ss_pred CHHHHHHHHhcCCeEEE
Q 035156 23 NGASLCLFRKLGFEDIS 39 (72)
Q Consensus 23 N~~Si~LfeklGF~~~g 39 (72)
=.+|.++|+++||+.--
T Consensus 14 L~~S~~Fy~alGfk~Np 30 (133)
T COG3607 14 LEASKAFYTALGFKFNP 30 (133)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 46899999999999765
No 90
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=38.02 E-value=66 Score=23.01 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=28.7
Q ss_pred eEEEEEeCCCCHHHHH--HHHhcCCeEEEEeeeeeeeeEEeecchhHHHHHHH
Q 035156 13 HVFRAKIGESNGASLC--LFRKLGFEDISYSEIFKEVTLELPVENAKREELLV 63 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~--LfeklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~~ 63 (72)
.++++.+.....+|+- .++.+||..+. +| +++|.+|...
T Consensus 270 ~~iv~yC~sG~~A~~~~~~L~~~G~~~v~---~Y---------dGs~~eW~~~ 310 (320)
T PLN02723 270 SPIVASCGTGVTACILALGLHRLGKTDVP---VY---------DGSWTEWGAL 310 (320)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCee---Ee---------CCCHHHHhcC
Confidence 4788998888777763 45689986544 44 8999999653
No 91
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=37.34 E-value=57 Score=17.42 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHh-cCCeEEEEee
Q 035156 20 GESNGASLCLFRK-LGFEDISYSE 42 (72)
Q Consensus 20 ~~~N~~Si~Lfek-lGF~~~g~~~ 42 (72)
.++-..|+++|.+ +||+......
T Consensus 6 ~~d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 6 VSDLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred eCCHHHHHHHHHhccCCEEEEeec
Confidence 4567889999997 9999887664
No 92
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=36.79 E-value=69 Score=18.12 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHhcCCeEEEEeeeeeeeeEEeecch
Q 035156 29 LFRKLGFEDISYSEIFKEVTLELPVEN 55 (72)
Q Consensus 29 LfeklGF~~~g~~~~~~ev~~~~~~~~ 55 (72)
+|-..||+..|...-||..+.-+.+++
T Consensus 20 i~L~nG~~l~G~I~~fD~ftVll~~~g 46 (61)
T TIGR02383 20 VFLVNGVQLKGVIESFDNFTVLLESQG 46 (61)
T ss_pred EEEeCCcEEEEEEEEEeeeEEEEEECC
Confidence 345679999999999999888777664
No 93
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=36.35 E-value=14 Score=20.06 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=12.2
Q ss_pred HhhcCceEEEEEeCCCCHHHH
Q 035156 7 VENFGIHVFRAKIGESNGASL 27 (72)
Q Consensus 7 ~~~l~l~~i~a~i~~~N~~Si 27 (72)
.+.||++++-..+.-.|.||+
T Consensus 20 l~~LgL~k~~~~v~~~~tp~~ 40 (54)
T cd01658 20 LKALGLKKINQTVVHKDTPSI 40 (54)
T ss_pred HHHcCCCcCCCEEEecCCHHH
Confidence 345677777655555555555
No 94
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=35.76 E-value=70 Score=23.94 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=26.6
Q ss_pred HHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEee
Q 035156 3 MAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 3 l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~ 42 (72)
++++.+ +|...+...+.|.| .++|+.+||.+....+
T Consensus 82 in~ay~-~g~~hLFiyTKp~~---~~lFk~~GF~~i~~~~ 117 (352)
T COG3053 82 INLAYE-RGRTHLFIYTKPEY---AALFKQCGFSEIASAE 117 (352)
T ss_pred HHHHHH-cCCceEEEEechhH---HHHHHhCCceEeeccC
Confidence 344444 67788888887765 5799999999988553
No 95
>cd01716 Hfq Hfq, an abundant, ubiquitous RNA-binding protein, functions as a pleiotrophic regulator of RNA metabolism in prokaryotes, required for transcription of some transcripts and degradation of others. Hfq binds small RNA molecules called riboregulators that modulate the stability or translation efficiency of RNA transcripts. Hfq binds preferentially to unstructured A/U-rich RNA sequences and is similar to the eukaryotic Sm proteins in both sequence and structure. Hfq forms a homo-hexameric ring similar to the heptameric ring of the Sm proteins.
Probab=35.52 E-value=71 Score=18.03 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHhcCCeEEEEeeeeeeeeEEeecch
Q 035156 29 LFRKLGFEDISYSEIFKEVTLELPVEN 55 (72)
Q Consensus 29 LfeklGF~~~g~~~~~~ev~~~~~~~~ 55 (72)
+|-..||+..|...-||..+.-+..++
T Consensus 16 v~L~NG~~l~G~I~~fD~ftVll~~~g 42 (61)
T cd01716 16 IYLVNGVQLKGQIESFDNFTVLLESDG 42 (61)
T ss_pred EEEeCCcEEEEEEEEEcceEEEEEECC
Confidence 455689999999999999888776653
No 96
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=34.58 E-value=7.5 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhcCCeEEEEeeeeeeeeEEe
Q 035156 21 ESNGASLCLFRKLGFEDISYSEIFKEVTLEL 51 (72)
Q Consensus 21 ~~N~~Si~LfeklGF~~~g~~~~~~ev~~~~ 51 (72)
.-|...+.=|+.+||.....+++|+-+.++-
T Consensus 7 Gi~~~lVd~F~~mGF~~dkVvevlrrlgik~ 37 (55)
T PF09288_consen 7 GIDKDLVDQFENMGFERDKVVEVLRRLGIKS 37 (55)
T ss_dssp --SHHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred CCCHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 3477888999999999999999998877765
No 97
>COG1923 Hfq Uncharacterized host factor I protein [General function prediction only]
Probab=34.43 E-value=65 Score=19.17 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=26.1
Q ss_pred hhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeeeeeEEeecc
Q 035156 8 ENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIFKEVTLELPVE 54 (72)
Q Consensus 8 ~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~ev~~~~~~~ 54 (72)
+.+..+++-+.|+- ..||+..|.++-|+..+.-+..+
T Consensus 13 n~~Rk~~i~VtIfL----------vNG~~L~G~V~sfD~f~VlL~~~ 49 (77)
T COG1923 13 NALRKEKIPVTIFL----------VNGFKLQGQVESFDNFVVLLKNT 49 (77)
T ss_pred HHHHhcCCeEEEEE----------EcCEEEEEEEEeeeeEEEEEEcC
Confidence 34445555555544 45999999999999977766555
No 98
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.23 E-value=59 Score=23.12 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=28.2
Q ss_pred HHhhcCceEEEE---EeCCCCHHHHHHHHhcCCeEEEE
Q 035156 6 AVENFGIHVFRA---KIGESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 6 a~~~l~l~~i~a---~i~~~N~~Si~LfeklGF~~~g~ 40 (72)
|.+.|+.+++.. ++.+-|.+-+..|++.||....-
T Consensus 112 aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 112 ALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 455688888875 45678999999999999988763
No 99
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=33.74 E-value=9.5 Score=22.45 Aligned_cols=11 Identities=36% Similarity=0.772 Sum_probs=9.8
Q ss_pred HHHHHhcCCeE
Q 035156 27 LCLFRKLGFED 37 (72)
Q Consensus 27 i~LfeklGF~~ 37 (72)
..+|+|+||..
T Consensus 116 ~~~Y~~~G~~~ 126 (127)
T PF13527_consen 116 PPFYRRFGFEY 126 (127)
T ss_dssp HHHHHHTTEEE
T ss_pred hhhhhcCCCEE
Confidence 68999999975
No 100
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=32.94 E-value=89 Score=21.73 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.8
Q ss_pred HHHhhcCceEEEEEeC---CCCHHHHHHHHhcCCeEEEEee
Q 035156 5 YAVENFGIHVFRAKIG---ESNGASLCLFRKLGFEDISYSE 42 (72)
Q Consensus 5 ya~~~l~l~~i~a~i~---~~N~~Si~LfeklGF~~~g~~~ 42 (72)
-|++.||.+||-..+- .-|..-.+.|++.||...+...
T Consensus 113 ~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~ 153 (239)
T TIGR02990 113 DGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC 153 (239)
T ss_pred HHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec
Confidence 4677899999876432 3388999999999999988654
No 101
>PRK04323 hypothetical protein; Provisional
Probab=32.70 E-value=62 Score=19.73 Aligned_cols=31 Identities=6% Similarity=-0.020 Sum_probs=25.4
Q ss_pred cCceEEEEEeCCCCHHHHHHHH---hcCCeEEEE
Q 035156 10 FGIHVFRAKIGESNGASLCLFR---KLGFEDISY 40 (72)
Q Consensus 10 l~l~~i~a~i~~~N~~Si~Lfe---klGF~~~g~ 40 (72)
....+++|.+.++..|+.++.+ .-|+....+
T Consensus 14 V~~~rIIAIv~~~Sap~Kr~~~~ak~~g~lidaT 47 (91)
T PRK04323 14 VSANRIIAIVSPESAPIKRIIQEARERGMLIDAT 47 (91)
T ss_pred EEcccEEEEECCCcHHHHHHHHHHHHcCeEEecc
Confidence 3678999999999999999986 577766653
No 102
>PRK01346 hypothetical protein; Provisional
Probab=32.48 E-value=89 Score=22.60 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=20.8
Q ss_pred hHHHHHhh---cCceEEEEEeCCCCHHHHHHHHhcCCeEEEEe
Q 035156 2 MMAYAVEN---FGIHVFRAKIGESNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 2 ~l~ya~~~---l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~ 41 (72)
||+.+.+. .|...+... +.+ .++|+|+||......
T Consensus 100 Ll~~~l~~a~~~g~~~~~L~--~~~---~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 100 LMREQLRRIRERGEPVAALT--ASE---GGIYGRFGYGPATYS 137 (411)
T ss_pred HHHHHHHHHHHCCCcEEEEE--CCc---hhhHhhCCCeeccce
Confidence 44555553 355444433 333 368999999988754
No 103
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=31.76 E-value=19 Score=19.73 Aligned_cols=20 Identities=5% Similarity=0.270 Sum_probs=10.9
Q ss_pred hhcCceEEEEEeCCCCHHHH
Q 035156 8 ENFGIHVFRAKIGESNGASL 27 (72)
Q Consensus 8 ~~l~l~~i~a~i~~~N~~Si 27 (72)
+.||++++.-.+.-.+.||+
T Consensus 21 ~~LgL~k~~~~v~~~dtp~i 40 (55)
T TIGR01308 21 KALGLRKIGRQVVLEDNPAI 40 (55)
T ss_pred HHcCCCcCCCEEEecCCHHH
Confidence 35677666654444444554
No 104
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=30.89 E-value=1.2e+02 Score=24.05 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=32.3
Q ss_pred HhhcCc---eEEEEEeCCCCHHHHH--HHHhcCCeEEEEeeeeeeeeEEeecchhHHHHHHH
Q 035156 7 VENFGI---HVFRAKIGESNGASLC--LFRKLGFEDISYSEIFKEVTLELPVENAKREELLV 63 (72)
Q Consensus 7 ~~~l~l---~~i~a~i~~~N~~Si~--LfeklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~~ 63 (72)
++.+|+ ..+++.+..+..+|.. +++.+||..+. +| +++|.+|...
T Consensus 215 ~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~---~Y---------dGsw~eW~~~ 264 (610)
T PRK09629 215 LRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVK---AY---------AGSWGEWGNH 264 (610)
T ss_pred HHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcE---Ee---------CCCHHHHhCC
Confidence 344555 4799999988888773 45688887654 44 8999999753
No 105
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.50 E-value=59 Score=18.66 Aligned_cols=20 Identities=5% Similarity=0.095 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHhcCCeEEEE
Q 035156 21 ESNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 21 ~~N~~Si~LfeklGF~~~g~ 40 (72)
++=.+|.++|+.+||+...+
T Consensus 11 ~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 11 PDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred CCHHHHHHHHHHhCCcEEee
Confidence 34478999999999998643
No 106
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=30.36 E-value=1.3e+02 Score=18.07 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHh-cCCeEEEEe
Q 035156 21 ESNGASLCLFRK-LGFEDISYS 41 (72)
Q Consensus 21 ~~N~~Si~Lfek-lGF~~~g~~ 41 (72)
++=.+|++.|++ +||+...+.
T Consensus 9 ~D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 9 GNAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred CCHHHHHHHHHHhcCCeEEEec
Confidence 556789999998 999987754
No 107
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=29.92 E-value=69 Score=18.46 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=15.0
Q ss_pred CCHHHHHHHHhcCCeEEEE
Q 035156 22 SNGASLCLFRKLGFEDISY 40 (72)
Q Consensus 22 ~N~~Si~LfeklGF~~~g~ 40 (72)
+=.+|.++|+.+||+...+
T Consensus 13 Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 13 DLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred CHHHHHHHHHHcCCEEEEe
Confidence 3467999999999987554
No 108
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=29.72 E-value=28 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.363 Sum_probs=24.3
Q ss_pred ceEEEEEeCCCCHHHHHHHHhcCCeEEEEe-----eeeeeeeEEeecc
Q 035156 12 IHVFRAKIGESNGASLCLFRKLGFEDISYS-----EIFKEVTLELPVE 54 (72)
Q Consensus 12 l~~i~a~i~~~N~~Si~LfeklGF~~~g~~-----~~~~ev~~~~~~~ 54 (72)
+.-+.-.+.. =.+.-.+|+++||+..++- ..+++-...+.++
T Consensus 10 ~dFvEFa~~~-~~~l~~~~~~lGF~~~a~hrsk~v~l~rQG~I~~vln 56 (139)
T PF14696_consen 10 FDFVEFAVPD-AQALAQLFTALGFQPVARHRSKDVTLYRQGDINFVLN 56 (139)
T ss_dssp EEEEEEE-SS-TTSCHHHHCCCCEEEECCECCCSEEEEEETTEEEEEE
T ss_pred eEEEEEecCC-HHHHHHHHHHhCcceEEecCCcceEEEEeCCEEEEEe
Confidence 3344444444 3455578999999999963 4566633333333
No 109
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=29.27 E-value=59 Score=18.46 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=16.2
Q ss_pred EEEeCCCC-HHHHHHHHh-cCCeEEE
Q 035156 16 RAKIGESN-GASLCLFRK-LGFEDIS 39 (72)
Q Consensus 16 ~a~i~~~N-~~Si~Lfek-lGF~~~g 39 (72)
.+.+...| ..|+++|++ +||+..-
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEE
Confidence 33444444 467899986 9999763
No 110
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=28.01 E-value=85 Score=18.34 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=21.6
Q ss_pred HHhh-cCceEEEEEeCCCCHHHHHHHHh
Q 035156 6 AVEN-FGIHVFRAKIGESNGASLCLFRK 32 (72)
Q Consensus 6 a~~~-l~l~~i~a~i~~~N~~Si~Lfek 32 (72)
+|.. ....+++|.+.|+..|+.|+-+.
T Consensus 5 Gfgn~V~~~rIiAIv~~~Sap~Krl~~~ 32 (73)
T PF04025_consen 5 GFGNFVNADRIIAIVSPDSAPIKRLIQE 32 (73)
T ss_pred cCCcEEEcceEEEEECCcchhHHHHHHH
Confidence 4442 36789999999999999998773
No 111
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=27.42 E-value=1.2e+02 Score=16.79 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.5
Q ss_pred HHHHHHHHh-cCCeEEEEee
Q 035156 24 GASLCLFRK-LGFEDISYSE 42 (72)
Q Consensus 24 ~~Si~Lfek-lGF~~~g~~~ 42 (72)
..|++.|++ +||+......
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~ 26 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDP 26 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHhcCCEEEEeCC
Confidence 578999997 9999998543
No 112
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=26.91 E-value=1.4e+02 Score=17.28 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=20.1
Q ss_pred EEEeCCCCHHHHHHHHh-cCCeEEEEee
Q 035156 16 RAKIGESNGASLCLFRK-LGFEDISYSE 42 (72)
Q Consensus 16 ~a~i~~~N~~Si~Lfek-lGF~~~g~~~ 42 (72)
++.+-++=.++++.|.+ +||......+
T Consensus 3 v~i~V~Dl~~a~~~~~~~lG~~~~~~~~ 30 (109)
T PF13669_consen 3 VGIVVPDLDAAAAFYCDVLGFEPWERYR 30 (109)
T ss_dssp EEEEES-HHHHHHHHHHCTTHEEEEEEE
T ss_pred EEEEcCCHHHHHHHHHHhhCCcEEEEEe
Confidence 35566778899999998 9999876543
No 113
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=26.80 E-value=1.8e+02 Score=18.70 Aligned_cols=38 Identities=5% Similarity=-0.114 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCHHH---HHHHHhcCCeEEEEeeeeeeeeEEeecchhHHHHHH
Q 035156 13 HVFRAKIGESNGAS---LCLFRKLGFEDISYSEIFKEVTLELPVENAKREELL 62 (72)
Q Consensus 13 ~~i~a~i~~~N~~S---i~LfeklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~ 62 (72)
..|+..+..++.+| ..+++++||+.+. ++ ++.+.+|..
T Consensus 117 ~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~---~l---------~GG~~aW~~ 157 (162)
T TIGR03865 117 RPLVFYCLADCWMSWNAAKRALAYGYSNVY---WY---------PDGTDGWQA 157 (162)
T ss_pred CEEEEEECCCCHHHHHHHHHHHhcCCcceE---Ee---------cCCHHHHHH
Confidence 68999999887654 4666788998765 22 667777754
No 114
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=25.90 E-value=79 Score=21.97 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=28.4
Q ss_pred eEEEEEeCCCCHHHHHH--HHhcCCeEEEEeeeeeeeeEEeecchhHHHHHH
Q 035156 13 HVFRAKIGESNGASLCL--FRKLGFEDISYSEIFKEVTLELPVENAKREELL 62 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~L--feklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~ 62 (72)
..+++.+...+.+|+.. ++.+||..+. ++ +++|.+|..
T Consensus 232 ~~ii~yC~~G~~A~~~~~~l~~~G~~~v~---~y---------~Gs~~eW~~ 271 (281)
T PRK11493 232 RPIIASCGSGVTAAVVVLALATLDVPNVK---LY---------DGAWSEWGA 271 (281)
T ss_pred CCEEEECCcHHHHHHHHHHHHHcCCCCce---ee---------CCCHHHHcc
Confidence 36889998888888743 4588988543 33 899999975
No 115
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=23.97 E-value=1.1e+02 Score=21.57 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHhhcCceEEEEEeCC-CCHHHHHHHHhcCCeEEEEe
Q 035156 5 YAVENFGIHVFRAKIGE-SNGASLCLFRKLGFEDISYS 41 (72)
Q Consensus 5 ya~~~l~l~~i~a~i~~-~N~~Si~LfeklGF~~~g~~ 41 (72)
++.+.++.++++..+.. ++.+|+.++++.|+.-.|..
T Consensus 131 ~a~~i~~~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 131 RTRKVFDTNDFIIITQRFHCERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHhCCCCEEEECCHHHHHHHHHHHHHcCCceEEEe
Confidence 44555677767665554 48999999999999988853
No 116
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.85 E-value=1.1e+02 Score=22.15 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=30.5
Q ss_pred eEEEEEeCCCCHHHHHHH--HhcCCeEEEEeeeeeeeeEEeecchhHHHHHH
Q 035156 13 HVFRAKIGESNGASLCLF--RKLGFEDISYSEIFKEVTLELPVENAKREELL 62 (72)
Q Consensus 13 ~~i~a~i~~~N~~Si~Lf--eklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~ 62 (72)
..+++.|+....+|+-+| +-+|.... +.| ++||-||..
T Consensus 235 ~~vI~yCgsG~~As~~~~al~~lg~~~~---~lY---------dGSWsEWg~ 274 (285)
T COG2897 235 KEVIVYCGSGVRASVTWLALAELGGPNN---RLY---------DGSWSEWGS 274 (285)
T ss_pred CCEEEEcCCchHHHHHHHHHHHhCCCCc---ccc---------cChHHHhhc
Confidence 679999999999999854 47777665 355 999999975
No 117
>PRK10291 glyoxalase I; Provisional
Probab=23.80 E-value=1e+02 Score=18.11 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=13.7
Q ss_pred HHHHHHHHh-cCCeEEEE
Q 035156 24 GASLCLFRK-LGFEDISY 40 (72)
Q Consensus 24 ~~Si~Lfek-lGF~~~g~ 40 (72)
.+|+++|++ +||+....
T Consensus 8 e~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHhccCCEEEEe
Confidence 679999975 99987654
No 118
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=23.70 E-value=32 Score=19.05 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=5.3
Q ss_pred HHHHhcCCeEEE
Q 035156 28 CLFRKLGFEDIS 39 (72)
Q Consensus 28 ~LfeklGF~~~g 39 (72)
+..+.+|++..+
T Consensus 21 ~tl~~LgL~k~~ 32 (59)
T PRK05611 21 ATLRGLGLRKIN 32 (59)
T ss_pred HHHHHcCCCcCC
Confidence 344444444443
No 119
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=23.66 E-value=1e+02 Score=17.04 Aligned_cols=18 Identities=39% Similarity=0.480 Sum_probs=14.7
Q ss_pred HHHHHHHHh-cCCeEEEEe
Q 035156 24 GASLCLFRK-LGFEDISYS 41 (72)
Q Consensus 24 ~~Si~Lfek-lGF~~~g~~ 41 (72)
.+|+++|++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 578999998 999976654
No 120
>PRK00395 hfq RNA-binding protein Hfq; Provisional
Probab=23.48 E-value=1.4e+02 Score=17.72 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=22.5
Q ss_pred HHHhcCCeEEEEeeeeeeeeEEeecch
Q 035156 29 LFRKLGFEDISYSEIFKEVTLELPVEN 55 (72)
Q Consensus 29 LfeklGF~~~g~~~~~~ev~~~~~~~~ 55 (72)
+|-..||+..|...-||..+.-+.+++
T Consensus 24 ifL~NG~~l~G~I~~fD~ftVll~~~g 50 (79)
T PRK00395 24 IYLVNGIKLQGQIESFDNFVVLLRNTG 50 (79)
T ss_pred EEEeCCcEEEEEEEEEccEEEEEEECC
Confidence 455679999999999999888777665
No 121
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=23.48 E-value=2e+02 Score=17.94 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=25.8
Q ss_pred HHHhhcCce---EEEEEeCC--CCHHHHH---HHHhcCCeEEEEeeeeeeeeEEeecchhHHHHH
Q 035156 5 YAVENFGIH---VFRAKIGE--SNGASLC---LFRKLGFEDISYSEIFKEVTLELPVENAKREEL 61 (72)
Q Consensus 5 ya~~~l~l~---~i~a~i~~--~N~~Si~---LfeklGF~~~g~~~~~~ev~~~~~~~~~~~~~~ 61 (72)
-.++.+|+. .++++... .+..|-+ +++.+|+..+. ++ ++.|.+|.
T Consensus 85 ~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~---il---------dGG~~~W~ 137 (138)
T cd01445 85 AMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVA---IL---------DGGFFEWF 137 (138)
T ss_pred HHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeE---Ee---------CCCHHHhh
Confidence 344556653 66666653 2444444 56678877544 33 77777774
No 122
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=23.28 E-value=32 Score=18.31 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=5.9
Q ss_pred hcCceEEEEEeC
Q 035156 9 NFGIHVFRAKIG 20 (72)
Q Consensus 9 ~l~l~~i~a~i~ 20 (72)
.||++++-..+.
T Consensus 21 ~LgL~k~~~~v~ 32 (53)
T cd00355 21 ALGLRKINQTVF 32 (53)
T ss_pred HcCCCcCCCEEE
Confidence 455555553333
No 123
>PF13354 Beta-lactamase2: Beta-lactamase enzyme family; PDB: 1G6A_A 1G68_A 3NIA_A 3NI9_B 1BUL_A 1BUE_A 4EUZ_A 4EV4_A 4EQI_A 1O7E_B ....
Probab=22.81 E-value=45 Score=21.46 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.4
Q ss_pred eCCCCHHHHHHHHhcC
Q 035156 19 IGESNGASLCLFRKLG 34 (72)
Q Consensus 19 i~~~N~~Si~LfeklG 34 (72)
..++|.|+..|++++|
T Consensus 73 ~~SDN~Atn~L~~~~G 88 (197)
T PF13354_consen 73 SYSDNTATNLLIDRLG 88 (197)
T ss_dssp HST-HHHHHHHHHHTT
T ss_pred hhcChHHHHHHHHHhc
Confidence 4689999999999998
No 124
>PHA00684 hypothetical protein
Probab=22.51 E-value=40 Score=21.91 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=38.2
Q ss_pred hHHHHHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEEEEeeeeeeeeEEeecchhHHHHHHH
Q 035156 2 MMAYAVENFGIHVFRAKIGESNGASLCLFRKLGFEDISYSEIFKEVTLELPVENAKREELLV 63 (72)
Q Consensus 2 ~l~ya~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~g~~~~~~ev~~~~~~~~~~~~~~~~ 63 (72)
.+.|+.++..++=++..|+.. ..||+-....+.|+++.=-....++|.++|..
T Consensus 65 Fi~ya~~hp~~~F~VT~IGCG---------iAG~~~~eIAplF~~a~~N~~lp~~f~~~l~~ 117 (128)
T PHA00684 65 FIAYATAHPHLNFQVTRVGCG---------LAGHLDADIAPMFRDAPDNCSFDEAWKPWLED 117 (128)
T ss_pred HHHHHHhCCCcEEEeeeeccc---------cccCCHHHHHHHHhcCCccccCcHHHHHHHcc
Confidence 467888888888888888765 34666666666677655445557999999875
No 125
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=22.30 E-value=1.7e+02 Score=16.87 Aligned_cols=25 Identities=4% Similarity=0.016 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCHH--HHHHHHhcCCeE
Q 035156 13 HVFRAKIGESNGA--SLCLFRKLGFED 37 (72)
Q Consensus 13 ~~i~a~i~~~N~~--Si~LfeklGF~~ 37 (72)
..++..+..++.+ +...+.++||..
T Consensus 67 ~~ivv~C~~G~rs~~a~~~L~~~G~~~ 93 (109)
T cd01533 67 TPIVVNCAGRTRSIIGAQSLINAGLPN 93 (109)
T ss_pred CeEEEECCCCchHHHHHHHHHHCCCCc
Confidence 4688888888776 567889999964
No 126
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=21.79 E-value=1.4e+02 Score=17.09 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCeEEEE
Q 035156 24 GASLCLFRKLGFEDISY 40 (72)
Q Consensus 24 ~~Si~LfeklGF~~~g~ 40 (72)
.++..+++.+||+....
T Consensus 47 ~g~~~~L~~~GF~~~~~ 63 (87)
T PF09409_consen 47 PGARELLEALGFREVTD 63 (87)
T ss_dssp TTHHHHHHHHT-EE---
T ss_pred hhHHHHHHHCCCEEecC
Confidence 56999999999999864
No 127
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=21.54 E-value=1.5e+02 Score=16.28 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=22.2
Q ss_pred HHhhcCceEEEEEeCCCCHHHHHHHHhcCCeEE
Q 035156 6 AVENFGIHVFRAKIGESNGASLCLFRKLGFEDI 38 (72)
Q Consensus 6 a~~~l~l~~i~a~i~~~N~~Si~LfeklGF~~~ 38 (72)
..+.+.-+.....+..-|....+++++.|+...
T Consensus 62 l~~~~~~~g~~v~i~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 62 AYKRARAAGGRLVLVNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred HHHHHHHcCCeEEEEcCCHHHHHHHHHhCccee
Confidence 333444444556666668899999999997653
No 128
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=21.44 E-value=1.5e+02 Score=16.49 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=20.4
Q ss_pred ceEEEEEeCCCCHHHHHHHH-hcCCeEEEEee
Q 035156 12 IHVFRAKIGESNGASLCLFR-KLGFEDISYSE 42 (72)
Q Consensus 12 l~~i~a~i~~~N~~Si~Lfe-klGF~~~g~~~ 42 (72)
++.+...| .+=.+|++.|+ .+||+......
T Consensus 2 l~Hi~i~v-~d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRV-KDLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEE-SCHHHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEc-CCHHHHHHHHHHHhCCcEEeeec
Confidence 34444333 33348899999 59999998776
No 129
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=20.98 E-value=42 Score=21.29 Aligned_cols=11 Identities=45% Similarity=0.622 Sum_probs=8.9
Q ss_pred CCCHHHHHHHH
Q 035156 21 ESNGASLCLFR 31 (72)
Q Consensus 21 ~~N~~Si~Lfe 31 (72)
..|.||+.||.
T Consensus 24 ~ANEPSlgLYr 34 (118)
T PF10167_consen 24 VANEPSLGLYR 34 (118)
T ss_pred HhcCchHHHHH
Confidence 35999999985
No 130
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=20.21 E-value=1.3e+02 Score=16.85 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHh-cCCeEEEEe
Q 035156 21 ESNGASLCLFRK-LGFEDISYS 41 (72)
Q Consensus 21 ~~N~~Si~Lfek-lGF~~~g~~ 41 (72)
++=.+|++.|++ +||+.....
T Consensus 11 ~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 11 PDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred CCHHHHHHHHHhccCcEEEeec
Confidence 344678999997 999987654
Done!