Query 035158
Match_columns 72
No_of_seqs 115 out of 692
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.3 0.0015 5.1E-08 41.1 7.2 44 27-70 60-103 (137)
2 3b5d_A Multidrug transporter E 97.2 0.0025 8.5E-08 38.3 7.8 50 21-70 52-103 (110)
3 1l2w_I Outer membrane virulenc 19.1 28 0.00097 18.8 0.3 19 18-36 43-61 (69)
4 4h33_A LMO2059 protein; bilaye 12.6 1.8E+02 0.0062 17.1 2.8 30 41-70 55-87 (137)
5 1rh5_B Preprotein translocase 11.2 1.7E+02 0.0059 16.1 2.2 17 52-68 37-53 (74)
6 3mp7_B Preprotein translocase 9.7 2.2E+02 0.0074 15.0 2.2 17 52-68 33-49 (61)
7 2ww9_B Protein transport prote 9.6 2.1E+02 0.0072 16.1 2.2 18 52-69 50-67 (80)
8 3eff_K Voltage-gated potassium 9.6 2.5E+02 0.0087 16.2 2.7 29 42-70 53-84 (139)
9 1rh5_C Secbeta; protein transl 9.6 2.3E+02 0.008 14.5 2.3 19 49-67 27-45 (53)
10 3kcu_A Probable formate transp 8.8 1.9E+02 0.0064 19.6 2.1 24 49-72 257-280 (285)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.25 E-value=0.0015 Score=41.10 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhHhhcCCcccchhhHHHHHHHHHHhhhhh
Q 035158 27 VQIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (72)
Q Consensus 27 ~sV~g~~K~v~~i~~s~~~f~~~~t~~~~~G~~i~~~G~~~Y~~ 70 (72)
+.+...+--+.+.+.|+++|+|++|+.+++|+.+.+.|+..-+.
T Consensus 60 y~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 60 YAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44436778899999999999999999999999999999998764
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.24 E-value=0.0025 Score=38.29 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=40.2
Q ss_pred ccchhHH--HHHHHHHHHHHHhhhHhhcCCcccchhhHHHHHHHHHHhhhhh
Q 035158 21 VTSAVTV--QIAAVVKEAVNILVAVFYFHDEFTWLKGFGLFTILVGVSLFNW 70 (72)
Q Consensus 21 ~tS~lT~--sV~g~~K~v~~i~~s~~~f~~~~t~~~~~G~~i~~~G~~~Y~~ 70 (72)
|.-|++. .+..-.--+.+...|+++|+|++|+.+++|+.+.+.|+..-+.
T Consensus 52 ~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3444443 3435667888899999999999999999999999999988764
No 3
>1l2w_I Outer membrane virulence protein YOPE; chaperone and virulence protein; 2.00A {Yersinia pseudotuberculosis} SCOP: d.198.1.1
Probab=19.07 E-value=28 Score=18.80 Aligned_cols=19 Identities=11% Similarity=0.273 Sum_probs=15.9
Q ss_pred HHhccchhHHHHHHHHHHH
Q 035158 18 LVSVTSAVTVQIAAVVKEA 36 (72)
Q Consensus 18 ~i~~tS~lT~sV~g~~K~v 36 (72)
+|.+.|++.++|.|-+.+.
T Consensus 43 iierlssvahsvigfiqrm 61 (69)
T 1l2w_I 43 IIERLSSVAHSVIGFIQRM 61 (69)
T ss_dssp CEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678899999999988775
No 4
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=12.56 E-value=1.8e+02 Score=17.09 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=18.9
Q ss_pred hhHhhcCC--cccc-hhhHHHHHHHHHHhhhhh
Q 035158 41 VAVFYFHD--EFTW-LKGFGLFTILVGVSLFNW 70 (72)
Q Consensus 41 ~s~~~f~~--~~t~-~~~~G~~i~~~G~~~Y~~ 70 (72)
+.-+=+|| |.|+ -+++.+...+.|...+++
T Consensus 55 ~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~ 87 (137)
T 4h33_A 55 ATTVGYGDIVPVTPIGRILASIMMLFGIAFIGM 87 (137)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 33444677 4443 366777888888877654
No 5
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=11.16 E-value=1.7e+02 Score=16.08 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=11.1
Q ss_pred chhhHHHHHHHHHHhhh
Q 035158 52 WLKGFGLFTILVGVSLF 68 (72)
Q Consensus 52 ~~~~~G~~i~~~G~~~Y 68 (72)
.....|+.+.+.|...|
T Consensus 37 iak~~~iG~~imG~IGf 53 (74)
T 1rh5_B 37 VAKVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777777666
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=9.73 E-value=2.2e+02 Score=15.02 Aligned_cols=17 Identities=35% Similarity=0.225 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHHhhh
Q 035158 52 WLKGFGLFTILVGVSLF 68 (72)
Q Consensus 52 ~~~~~G~~i~~~G~~~Y 68 (72)
..+..|+.+.+.|...|
T Consensus 33 iak~~~iG~~i~G~iGf 49 (61)
T 3mp7_B 33 AAKITGLGIILIGLIGM 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566777777777665
No 7
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=9.63 E-value=2.1e+02 Score=16.06 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHHhhhh
Q 035158 52 WLKGFGLFTILVGVSLFN 69 (72)
Q Consensus 52 ~~~~~G~~i~~~G~~~Y~ 69 (72)
.....|+.+++.|...|-
T Consensus 50 iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 50 IVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455678888888887764
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=9.57 E-value=2.5e+02 Score=16.18 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=18.3
Q ss_pred hHhhcCC--ccc-chhhHHHHHHHHHHhhhhh
Q 035158 42 AVFYFHD--EFT-WLKGFGLFTILVGVSLFNW 70 (72)
Q Consensus 42 s~~~f~~--~~t-~~~~~G~~i~~~G~~~Y~~ 70 (72)
+-+=||| |.| .-+++.+...+.|+.+..+
T Consensus 53 tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~ 84 (139)
T 3eff_K 53 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 84 (139)
T ss_dssp TTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCCCcCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3344677 444 3467777778888776654
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=9.55 E-value=2.3e+02 Score=14.53 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=15.7
Q ss_pred cccchhhHHHHHHHHHHhh
Q 035158 49 EFTWLKGFGLFTILVGVSL 67 (72)
Q Consensus 49 ~~t~~~~~G~~i~~~G~~~ 67 (72)
+++|..++++.++++....
T Consensus 27 Ki~P~~Vl~~si~~i~~V~ 45 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEA 45 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHH
Confidence 6899999999998877654
No 10
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=8.78 E-value=1.9e+02 Score=19.63 Aligned_cols=24 Identities=8% Similarity=-0.173 Sum_probs=20.5
Q ss_pred cccchhhHHHHHHHHHHhhhhhcC
Q 035158 49 EFTWLKGFGLFTILVGVSLFNWYK 72 (72)
Q Consensus 49 ~~t~~~~~G~~i~~~G~~~Y~~~k 72 (72)
|.|.-|++|=.+.+....||.+.|
T Consensus 257 pvtlGNiIGG~~fvgl~y~~~~~~ 280 (285)
T 3kcu_A 257 PVTIGNIIGGGLLVGLTYWVIYLR 280 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888999999998888888888765
Done!