Query 035158
Match_columns 72
No_of_seqs 115 out of 692
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 15:55:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035158.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035158hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n1ea1 a.100.1.6 (A:198-357) 21.8 40 0.0029 19.2 3.1 20 25-44 4-23 (160)
2 d1txga1 a.100.1.6 (A:181-335) 21.8 37 0.0027 19.4 2.9 20 25-44 3-22 (155)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 18.7 32 0.0023 14.4 1.5 14 56-69 3-16 (27)
4 d1l2wi_ d.198.1.1 (I:) YopE ch 18.5 14 0.001 18.1 0.3 19 18-36 38-56 (57)
5 d1cola_ f.1.1.1 (A:) Colicin A 15.6 72 0.0052 19.5 3.3 19 46-65 161-179 (197)
6 d1kqfb2 f.23.22.1 (B:246-290) 14.0 39 0.0028 16.0 1.3 27 42-68 4-30 (45)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 12.6 55 0.004 14.5 1.5 12 59-70 15-26 (34)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 10.6 1.1E+02 0.0083 15.6 2.8 29 41-69 52-83 (103)
9 d1c8za_ d.23.1.1 (A:) Transcri 7.4 87 0.0063 19.6 1.6 18 46-63 241-258 (265)
10 d1rh5b_ f.23.28.1 (B:) Preprot 5.2 2.1E+02 0.015 13.7 2.2 14 55-68 29-42 (56)
No 1
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=21.85 E-value=40 Score=19.21 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHhhhHh
Q 035158 25 VTVQIAAVVKEAVNILVAVF 44 (72)
Q Consensus 25 lT~sV~g~~K~v~~i~~s~~ 44 (72)
..-.++|.+|++.-+..|+.
T Consensus 4 ~GvE~~galKNi~Aia~Gi~ 23 (160)
T d1n1ea1 4 VGCEVASAVKNVLAIGSGVA 23 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999886
No 2
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.79 E-value=37 Score=19.36 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHhhhHh
Q 035158 25 VTVQIAAVVKEAVNILVAVF 44 (72)
Q Consensus 25 lT~sV~g~~K~v~~i~~s~~ 44 (72)
+...++|.+|++.-+..|+.
T Consensus 3 iGvEi~galKNi~Aia~Gi~ 22 (155)
T d1txga1 3 IGTEITSALKNVYSIAIAWI 22 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 34678999999999999986
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.73 E-value=32 Score=14.42 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhh
Q 035158 56 FGLFTILVGVSLFN 69 (72)
Q Consensus 56 ~G~~i~~~G~~~Y~ 69 (72)
+|..+...|..+|.
T Consensus 3 lgli~~tl~glf~a 16 (27)
T d2e74g1 3 LGLVFATLGGLFYA 16 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 45555544444443
No 4
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=18.55 E-value=14 Score=18.15 Aligned_cols=19 Identities=11% Similarity=0.273 Sum_probs=15.7
Q ss_pred HHhccchhHHHHHHHHHHH
Q 035158 18 LVSVTSAVTVQIAAVVKEA 36 (72)
Q Consensus 18 ~i~~tS~lT~sV~g~~K~v 36 (72)
++.+.|++.+++.+-+|+.
T Consensus 38 i~e~lss~ahs~i~fi~rm 56 (57)
T d1l2wi_ 38 IIERLSSVAHSVIGFIQRM 56 (57)
T ss_dssp CEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567899999999998875
No 5
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=15.60 E-value=72 Score=19.47 Aligned_cols=19 Identities=11% Similarity=-0.094 Sum_probs=13.0
Q ss_pred cCCcccchhhHHHHHHHHHH
Q 035158 46 FHDEFTWLKGFGLFTILVGV 65 (72)
Q Consensus 46 f~~~~t~~~~~G~~i~~~G~ 65 (72)
.+-|.|+..++|+ +.+..+
T Consensus 161 ~g~~~~~iGI~g~-li~~~v 179 (197)
T d1cola_ 161 LGVPAIAVGIAGI-LLAAVV 179 (197)
T ss_dssp CCSCHHHHHHHHH-HHHHHH
T ss_pred ccccccHHHHHHH-HHHHHH
Confidence 3568888888888 554443
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=13.96 E-value=39 Score=16.00 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=20.1
Q ss_pred hHhhcCCcccchhhHHHHHHHHHHhhh
Q 035158 42 AVFYFHDEFTWLKGFGLFTILVGVSLF 68 (72)
Q Consensus 42 s~~~f~~~~t~~~~~G~~i~~~G~~~Y 68 (72)
++-++++...+...+|+..+.++.+++
T Consensus 4 ~V~lWKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 4 SVSLWKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 455677778888888888888777654
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.63 E-value=55 Score=14.49 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhh
Q 035158 59 FTILVGVSLFNW 70 (72)
Q Consensus 59 ~i~~~G~~~Y~~ 70 (72)
.+.+.|++.|.-
T Consensus 15 vi~~vG~FfYGs 26 (34)
T d2axtj1 15 VIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHhheeeeeeee
Confidence 356788888753
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.57 E-value=1.1e+02 Score=15.57 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=18.2
Q ss_pred hhHhhcCC--ccc-chhhHHHHHHHHHHhhhh
Q 035158 41 VAVFYFHD--EFT-WLKGFGLFTILVGVSLFN 69 (72)
Q Consensus 41 ~s~~~f~~--~~t-~~~~~G~~i~~~G~~~Y~ 69 (72)
++-+=+|| |.| +-+++.....+.|+..+.
T Consensus 52 ~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~ 83 (103)
T d1r3jc_ 52 ATTVGYGDLYPVTLWGRCVAVVVMVAGITSFG 83 (103)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCccccCChhHHHHHHHHHHHHHHHHH
Confidence 33344677 444 446777777888877664
No 9
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.43 E-value=87 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=15.1
Q ss_pred cCCcccchhhHHHHHHHH
Q 035158 46 FHDEFTWLKGFGLFTILV 63 (72)
Q Consensus 46 f~~~~t~~~~~G~~i~~~ 63 (72)
|..|+|+.+..+++++-.
T Consensus 241 ~~~Pls~~qaF~i~lssf 258 (265)
T d1c8za_ 241 YNYPLCALQAFAIALSSF 258 (265)
T ss_dssp ECTTCCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHh
Confidence 567999999999998764
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.22 E-value=2.1e+02 Score=13.73 Aligned_cols=14 Identities=21% Similarity=0.140 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHhhh
Q 035158 55 GFGLFTILVGVSLF 68 (72)
Q Consensus 55 ~~G~~i~~~G~~~Y 68 (72)
+.|+.+.+.|...|
T Consensus 29 v~~iG~~i~G~IGf 42 (56)
T d1rh5b_ 29 VTALGISLLGIIGY 42 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555444
Done!