BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035160
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60
++ G V+D+ P +T G GGV RN+AE +++G S LG D
Sbjct: 10 LVFGASVVDVFGFSKASYRPYNSTPGHVKISFGGVCRNIAENXARVGVNTNFXSILGNDE 69
Query: 61 VG 62
G
Sbjct: 70 HG 71
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 32 LGGVARNVAECMSKLGAKPYMISALGLDMVGDF 64
GG N+A +S+LG K +IS LG D G++
Sbjct: 53 FGGSPANIAVNLSRLGKKVALISRLGADAFGNY 85
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDF 64
GG NVA +S+LG K +IS +G D G++
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEY 64
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDF 64
GG NVA +S+LG K +IS +G D G++
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEY 64
>pdb|1VSG|A Chain A, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
pdb|1VSG|B Chain B, 2.9 Angstroms Resolution Structure Of The N-Terminal
Domain Of A Variant Surface Glycoprotein From
Trypanosoma Brucei
Length = 364
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 3 IGGMVLDIHATPSIPANPRTTTLGKANYVLGGVAR----------NVAEC 42
IGG+ + +P P P T LGKA YV G+ R N AEC
Sbjct: 140 IGGVPCKLQLSPIQPKRPAATYLGKAGYV--GLTRQADAANNFHDNDAEC 187
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDF 64
GG + NV C+++LG + I LG D G F
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRF 81
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDF 64
GG + NV C+++LG + I LG D G F
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRF 81
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 4 GGMVLDIHATPSIPANPRTTTLGKANYVL 32
G ++DI +P++P T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 4 GGMVLDIHATPSIPANPRTTTLGKANYVL 32
G ++DI +P++P T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 4 GGMVLDIHATPSIPANPRTTTLGKANYVL 32
G ++DI +P++P T +GK ++ L
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTL 440
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form)
From E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form)
From E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex
With Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex
With Adp From E.Coli
Length = 325
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 3 IGGMVLDIHATP------SIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISAL 56
IG ++DI P + + P L + GG A N A +S+LG + + S +
Sbjct: 11 IGAAIVDIPLQPVSKNIFDVDSYP----LERIAXTTGGDAINEATIISRLGHRTALXSRI 66
Query: 57 GLDMVGDF 64
G D G F
Sbjct: 67 GKDAAGQF 74
>pdb|1BRL|B Chain B, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
pdb|1LUC|B Chain B, Bacterial Luciferase
pdb|1XKJ|A Chain A, Bacterial Luciferase Beta2 Homodimer
pdb|1XKJ|B Chain B, Bacterial Luciferase Beta2 Homodimer
pdb|1BSL|A Chain A, Structure Of Alkanal Monooxygenase Beta Chain
pdb|1BSL|B Chain B, Structure Of Alkanal Monooxygenase Beta Chain
pdb|1BRL|D Chain D, Three-Dimensional Structure Of Bacterial Luciferase From
Vibrio Harveyi At 2.4 Angstroms Resolution
Length = 324
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 9 DIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLG 47
D ++ P I NP T G + ++ V E +KLG
Sbjct: 149 DFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLG 187
>pdb|3FGC|B Chain B, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
pdb|3FGC|D Chain D, Crystal Structure Of The Bacterial Luciferase:flavin
Complex Reveals The Basis Of Intersubunit Communication
Length = 332
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 9 DIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLG 47
D ++ P I NP T G + ++ V E +KLG
Sbjct: 149 DFYSFPKISVNPHAFTEGGPAQFVNATSKEVVEWAAKLG 187
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The
Ribokinase Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The
Ribokinase Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The
Ribokinase Family
Length = 302
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 3 IGGMVLD-IHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLD 59
+G LD I P + + A GG A N A + KLG ++S +G D
Sbjct: 11 VGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAANTAVGIKKLGVNSELLSCVGYD 68
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 32 LGGVARNVAECMSKLGAKPYMISALGLDMVGD 63
+GG N A +S+ G ++SA+G D +GD
Sbjct: 23 IGGAPANFAYHVSQFGFDSRVVSAVGNDELGD 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,078,587
Number of Sequences: 62578
Number of extensions: 63323
Number of successful extensions: 201
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 22
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)