BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035160
         (71 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P30235|PSUK_ECOLI Pseudouridine kinase OS=Escherichia coli (strain K12) GN=psuK
          PE=1 SV=2
          Length = 313

 Score = 40.8 bits (94), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%)

Query: 1  MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60
          +IIG   +D+        N   +  GK  +  GGV RN+A+ ++ LG K +++SA+G D 
Sbjct: 8  VIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDF 67

Query: 61 VG 62
           G
Sbjct: 68 YG 69


>sp|P33020|YEII_ECOLI Uncharacterized sugar kinase YeiI OS=Escherichia coli (strain K12)
           GN=yeiI PE=3 SV=2
          Length = 362

 Score = 33.5 bits (75), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 1   MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60
           +++G + +DI     I      +  G  +   GGV RN+A  ++ LG   +++S +G D 
Sbjct: 61  VVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHNLALLGRDVHLLSVIGDDF 120

Query: 61  VGD 63
            G+
Sbjct: 121 YGE 123


>sp|O27587|Y1544_METTH Uncharacterized sugar kinase MTH_1544 OS=Methanothermobacter
          thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
          10044 / NBRC 100330 / Delta H) GN=MTH_1544 PE=3 SV=1
          Length = 309

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 17 PANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVG 62
          P    +T + +   + GG A NVA   S+LG +  ++SA+G D  G
Sbjct: 25 PEPNTSTAIKRMRNLHGGAAANVALVGSRLGLRTSLVSAVGGDFEG 70


>sp|O59128|Y1459_PYRHO Uncharacterized sugar kinase PH1459 OS=Pyrococcus horikoshii
          (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
          100139 / OT-3) GN=PH1459 PE=1 SV=1
          Length = 310

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDF 64
          GG   NVA  +S+LG K  +IS +G D  G++
Sbjct: 37 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEY 68


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,012,807
Number of Sequences: 539616
Number of extensions: 846051
Number of successful extensions: 2171
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 10
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)