Query 035160
Match_columns 71
No_of_seqs 150 out of 1105
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09954 putative kinase; Prov 99.7 7.2E-18 1.6E-22 111.9 8.2 70 1-71 61-131 (362)
2 cd01947 Guanosine_kinase_like 99.7 9.7E-18 2.1E-22 106.5 8.1 71 1-71 3-74 (265)
3 PRK09850 pseudouridine kinase; 99.7 9E-18 2E-22 109.3 7.5 71 1-71 8-78 (313)
4 PRK11142 ribokinase; Provision 99.7 1.4E-17 3E-22 107.5 7.6 71 1-71 6-77 (306)
5 cd01939 Ketohexokinase Ketohex 99.7 2.1E-17 4.5E-22 106.4 8.0 71 1-71 3-74 (290)
6 cd01944 YegV_kinase_like YegV- 99.7 5E-17 1.1E-21 104.4 7.6 70 1-71 3-73 (289)
7 KOG2855 Ribokinase [Carbohydra 99.7 1.7E-17 3.6E-22 109.8 5.4 71 1-71 13-84 (330)
8 PTZ00292 ribokinase; Provision 99.7 5.5E-17 1.2E-21 105.9 7.5 71 1-71 19-90 (326)
9 cd01174 ribokinase Ribokinase 99.7 6.1E-17 1.3E-21 103.7 7.5 71 1-71 3-74 (292)
10 cd01941 YeiC_kinase_like YeiC- 99.7 7.9E-17 1.7E-21 103.0 7.4 71 1-71 3-73 (288)
11 cd01945 ribokinase_group_B Rib 99.7 1.6E-16 3.5E-21 101.5 8.1 71 1-71 3-74 (284)
12 cd01942 ribokinase_group_A Rib 99.7 1.4E-16 3E-21 101.5 7.5 71 1-71 3-74 (279)
13 cd01168 adenosine_kinase Adeno 99.7 5.3E-17 1.2E-21 105.4 5.7 71 1-71 5-93 (312)
14 PLN02813 pfkB-type carbohydrat 99.6 7.1E-16 1.5E-20 105.0 6.5 71 1-71 73-172 (426)
15 PTZ00247 adenosine kinase; Pro 99.6 8.6E-16 1.9E-20 101.3 6.5 71 1-71 9-104 (345)
16 PF00294 PfkB: pfkB family car 99.6 1.4E-15 3E-20 97.4 7.0 70 1-71 5-74 (301)
17 COG0524 RbsK Sugar kinases, ri 99.6 1.5E-15 3.2E-20 98.5 6.1 71 1-71 3-75 (311)
18 cd01164 FruK_PfkB_like 1-phosp 99.6 1.7E-15 3.6E-20 97.4 6.0 69 2-71 5-73 (289)
19 PLN02341 pfkB-type carbohydrat 99.6 1.9E-15 4.1E-20 103.9 6.3 70 1-71 76-157 (470)
20 TIGR02152 D_ribokin_bact ribok 99.6 3.7E-15 8.1E-20 95.7 7.2 68 4-71 1-69 (293)
21 PLN02967 kinase 99.6 1.9E-15 4.1E-20 106.2 5.7 71 1-71 200-281 (581)
22 PLN02323 probable fructokinase 99.6 3.4E-15 7.3E-20 97.8 5.5 68 1-71 14-81 (330)
23 cd01166 KdgK 2-keto-3-deoxyglu 99.6 4.3E-15 9.3E-20 95.1 5.5 67 1-71 3-69 (294)
24 cd01172 RfaE_like RfaE encodes 99.6 1.5E-14 3.2E-19 93.2 7.2 70 1-71 3-77 (304)
25 cd01167 bac_FRK Fructokinases 99.6 1.1E-14 2.4E-19 93.4 6.2 64 1-71 3-66 (295)
26 TIGR03828 pfkB 1-phosphofructo 99.5 1.3E-14 2.9E-19 93.4 6.4 67 3-71 5-72 (304)
27 PLN02543 pfkB-type carbohydrat 99.5 9.5E-15 2E-19 101.3 5.5 71 1-71 129-210 (496)
28 PRK11316 bifunctional heptose 99.5 3E-14 6.4E-19 97.3 7.5 70 1-71 14-88 (473)
29 TIGR02198 rfaE_dom_I rfaE bifu 99.5 3.9E-14 8.4E-19 91.9 7.4 70 1-71 11-85 (315)
30 PRK09813 fructoselysine 6-kina 99.5 4.2E-14 9.1E-19 90.0 5.4 58 1-71 4-61 (260)
31 cd01940 Fructoselysine_kinase_ 99.5 1.2E-13 2.6E-18 87.6 5.5 58 1-71 3-60 (264)
32 PRK09434 aminoimidazole ribosi 99.4 2.1E-13 4.6E-18 88.2 6.1 61 1-71 6-66 (304)
33 TIGR03168 1-PFK hexose kinase, 99.4 1.9E-13 4.2E-18 88.3 5.8 65 5-71 7-72 (303)
34 TIGR01231 lacC tagatose-6-phos 99.4 3.4E-13 7.5E-18 87.6 6.3 66 5-71 7-72 (309)
35 PRK13508 tagatose-6-phosphate 99.4 5.3E-13 1.1E-17 86.8 7.0 68 3-71 6-73 (309)
36 PRK09513 fruK 1-phosphofructok 99.4 4.3E-13 9.3E-18 87.3 6.1 65 5-70 11-75 (312)
37 cd01937 ribokinase_group_D Rib 99.4 4.9E-13 1.1E-17 84.5 6.2 57 1-70 3-59 (254)
38 cd01946 ribokinase_group_C Rib 99.4 1.2E-12 2.6E-17 83.8 5.7 59 1-71 3-61 (277)
39 PRK10294 6-phosphofructokinase 99.4 1.4E-12 3E-17 84.8 5.7 66 5-71 10-75 (309)
40 cd00287 ribokinase_pfkB_like r 99.3 1.6E-11 3.5E-16 74.5 6.0 54 1-54 3-57 (196)
41 PRK15074 inosine/guanosine kin 99.2 3.7E-11 8E-16 82.4 7.0 70 1-70 37-131 (434)
42 cd01943 MAK32 MAK32 kinase. M 99.2 7.9E-12 1.7E-16 82.5 3.0 61 1-71 3-68 (328)
43 PLN02379 pfkB-type carbohydrat 99.2 2.8E-11 6.1E-16 81.2 5.4 44 28-71 81-125 (367)
44 PLN02630 pfkB-type carbohydrat 99.2 9.6E-11 2.1E-15 78.0 6.1 50 1-60 15-64 (335)
45 PLN02548 adenosine kinase 99.1 5E-11 1.1E-15 78.2 3.6 46 26-71 45-93 (332)
46 COG2870 RfaE ADP-heptose synth 99.1 5E-10 1.1E-14 76.3 6.4 69 1-70 14-87 (467)
47 KOG3009 Predicted carbohydrate 99.1 3.5E-10 7.6E-15 78.3 5.4 68 1-68 344-412 (614)
48 KOG2947 Carbohydrate kinase [C 98.6 5.7E-08 1.2E-12 63.1 5.0 71 1-71 8-79 (308)
49 COG1105 FruK Fructose-1-phosph 98.2 2.1E-06 4.5E-11 57.1 4.2 63 6-70 9-72 (310)
50 KOG2854 Possible pfkB family c 98.0 1.2E-05 2.6E-10 54.0 4.8 70 2-71 11-104 (343)
51 PRK13235 nifH nitrogenase redu 79.6 2.2 4.7E-05 27.5 2.6 18 36-53 18-35 (274)
52 COG2893 ManX Phosphotransferas 79.2 3.7 8E-05 24.6 3.4 30 27-56 64-93 (143)
53 PRK13232 nifH nitrogenase redu 75.8 3 6.5E-05 26.8 2.5 18 36-53 18-35 (273)
54 PRK13230 nitrogenase reductase 74.4 3.2 6.9E-05 26.8 2.3 18 36-53 18-35 (279)
55 TIGR01287 nifH nitrogenase iro 71.8 4 8.8E-05 26.2 2.4 18 36-53 17-34 (275)
56 PHA02518 ParA-like protein; Pr 71.7 4.1 8.9E-05 24.7 2.3 20 36-55 18-37 (211)
57 PF09140 MipZ: ATPase MipZ; I 70.9 4.1 8.9E-05 26.9 2.2 27 36-65 18-44 (261)
58 cd02040 NifH NifH gene encodes 70.9 4.2 9E-05 25.8 2.2 22 32-53 9-35 (270)
59 TIGR01281 DPOR_bchL light-inde 70.7 5.4 0.00012 25.4 2.7 18 36-53 17-34 (268)
60 PRK10037 cell division protein 69.6 5.1 0.00011 25.4 2.5 18 36-53 19-36 (250)
61 PRK15394 4-deoxy-4-formamido-L 69.3 10 0.00022 25.3 3.9 43 27-70 12-54 (296)
62 PF06564 YhjQ: YhjQ protein; 69.0 5.2 0.00011 26.1 2.4 19 37-55 20-38 (243)
63 PF00142 Fer4_NifH: 4Fe-4S iro 68.1 7.6 0.00016 25.9 3.0 23 36-58 17-39 (273)
64 COG2084 MmsB 3-hydroxyisobutyr 64.8 26 0.00056 23.5 5.0 43 26-68 131-176 (286)
65 TIGR02354 thiF_fam2 thiamine b 61.5 9.2 0.0002 23.9 2.4 21 29-49 26-46 (200)
66 cd02037 MRP-like MRP (Multiple 60.4 12 0.00025 22.2 2.6 19 36-54 17-35 (169)
67 PRK13236 nitrogenase reductase 59.8 11 0.00024 24.8 2.7 18 36-53 23-40 (296)
68 cd02032 Bchl_like This family 59.8 11 0.00024 24.0 2.7 18 36-53 17-34 (267)
69 PF03853 YjeF_N: YjeF-related 59.1 18 0.00039 21.8 3.4 38 31-68 36-73 (169)
70 PRK13234 nifH nitrogenase redu 58.3 12 0.00025 24.6 2.6 18 36-53 21-38 (295)
71 TIGR00824 EIIA-man PTS system, 57.8 22 0.00047 20.2 3.4 28 27-54 63-90 (116)
72 PRK13233 nifH nitrogenase redu 57.8 11 0.00023 24.2 2.3 22 32-53 10-37 (275)
73 PRK13185 chlL protochlorophyll 57.5 13 0.00028 23.7 2.6 18 36-53 19-36 (270)
74 cd02117 NifH_like This family 57.1 14 0.0003 22.8 2.7 18 36-53 17-34 (212)
75 COG0489 Mrp ATPases involved i 56.8 13 0.00029 24.2 2.6 28 27-54 61-93 (265)
76 CHL00072 chlL photochlorophyll 56.8 13 0.00028 24.4 2.6 19 36-54 17-35 (290)
77 PRK11670 antiporter inner memb 56.8 13 0.00029 25.4 2.7 28 27-54 111-143 (369)
78 cd01938 ADPGK_ADPPFK ADP-depen 56.4 17 0.00038 25.7 3.3 32 28-59 101-133 (445)
79 PRK13705 plasmid-partitioning 53.3 16 0.00035 25.1 2.7 28 27-54 110-142 (388)
80 cd02036 MinD Bacterial cell di 53.1 17 0.00037 21.2 2.5 19 36-54 17-35 (179)
81 COG1348 NifH Nitrogenase subun 53.1 15 0.00032 24.5 2.4 24 36-59 18-41 (278)
82 PRK13869 plasmid-partitioning 53.1 28 0.00061 24.1 3.9 27 27-53 125-156 (405)
83 PRK10818 cell division inhibit 52.1 16 0.00035 23.2 2.5 23 32-54 11-38 (270)
84 PF10678 DUF2492: Protein of u 52.0 37 0.00081 18.4 3.5 31 40-70 27-57 (78)
85 PRK13849 putative crown gall t 52.0 17 0.00037 23.2 2.5 20 36-55 19-38 (231)
86 PF01488 Shikimate_DH: Shikima 51.9 18 0.00039 20.9 2.5 40 28-69 16-56 (135)
87 TIGR03029 EpsG chain length de 50.0 19 0.00042 23.0 2.6 20 36-55 121-140 (274)
88 TIGR03453 partition_RepA plasm 49.3 38 0.00083 23.1 4.0 27 27-53 108-139 (387)
89 TIGR02045 P_fruct_ADP ADP-spec 49.2 16 0.00035 26.0 2.2 29 30-58 86-116 (446)
90 PF13579 Glyco_trans_4_4: Glyc 49.1 23 0.0005 19.6 2.6 23 37-59 8-30 (160)
91 PRK03979 ADP-specific phosphof 49.0 18 0.0004 25.8 2.5 31 29-59 98-130 (463)
92 TIGR01969 minD_arch cell divis 48.9 21 0.00046 22.1 2.6 18 36-53 18-35 (251)
93 TIGR03371 cellulose_yhjQ cellu 48.8 22 0.00048 22.0 2.7 20 36-55 19-38 (246)
94 TIGR03853 matur_matur probable 47.9 45 0.00099 18.1 3.4 32 39-70 24-55 (77)
95 PHA02519 plasmid partition pro 47.1 21 0.00045 24.7 2.5 29 27-55 110-143 (387)
96 PF01973 MAF_flag10: Protein o 47.0 29 0.00062 20.7 2.9 26 29-54 135-162 (170)
97 COG1058 CinA Predicted nucleot 47.0 62 0.0013 21.4 4.5 25 36-60 23-47 (255)
98 PRK15116 sulfur acceptor prote 46.6 20 0.00044 23.6 2.3 21 28-48 34-54 (268)
99 PRK12549 shikimate 5-dehydroge 46.1 34 0.00073 22.5 3.3 28 28-55 131-159 (284)
100 CHL00175 minD septum-site dete 46.0 24 0.00052 22.7 2.5 27 27-53 19-50 (281)
101 TIGR00177 molyb_syn molybdenum 44.4 61 0.0013 18.9 3.9 26 36-61 29-54 (144)
102 cd00006 PTS_IIA_man PTS_IIA, P 44.0 48 0.001 18.7 3.4 30 27-56 62-91 (122)
103 TIGR01007 eps_fam capsular exo 43.7 30 0.00065 21.0 2.6 19 36-54 35-53 (204)
104 PF00890 FAD_binding_2: FAD bi 43.5 25 0.00054 23.7 2.4 26 32-57 7-32 (417)
105 COG1053 SdhA Succinate dehydro 43.3 28 0.0006 25.4 2.7 28 29-56 11-38 (562)
106 PRK12550 shikimate 5-dehydroge 43.3 51 0.0011 21.6 3.8 28 28-55 126-154 (272)
107 TIGR02016 BchX chlorophyllide 42.9 29 0.00063 22.9 2.6 20 36-55 17-36 (296)
108 cd00562 NifX_NifB This CD repr 42.6 44 0.00094 17.8 3.0 33 33-65 47-79 (102)
109 cd00550 ArsA_ATPase Oxyanion-t 42.1 34 0.00073 22.0 2.8 20 36-55 17-36 (254)
110 PRK05854 short chain dehydroge 42.1 54 0.0012 21.4 3.8 36 32-69 23-58 (313)
111 cd01487 E1_ThiF_like E1_ThiF_l 42.1 33 0.00071 20.8 2.6 19 31-49 6-24 (174)
112 cd00886 MogA_MoaB MogA_MoaB fa 41.7 71 0.0015 18.8 4.0 25 37-61 23-47 (152)
113 PF01656 CbiA: CobQ/CobB/MinD/ 41.7 34 0.00073 20.2 2.6 20 36-55 16-35 (195)
114 TIGR01968 minD_bact septum sit 41.4 32 0.0007 21.4 2.6 18 36-53 19-36 (261)
115 COG2894 MinD Septum formation 41.1 31 0.00066 22.9 2.4 19 36-54 20-38 (272)
116 PRK14039 ADP-dependent glucoki 40.7 43 0.00092 24.0 3.2 26 27-52 85-110 (453)
117 PF00070 Pyr_redox: Pyridine n 40.6 54 0.0012 16.8 3.0 22 36-57 11-32 (80)
118 PF01933 UPF0052: Uncharacteri 40.5 66 0.0014 21.6 4.0 39 31-69 4-45 (300)
119 PRK15088 PTS system mannose-sp 40.5 48 0.001 22.4 3.4 28 27-54 64-91 (322)
120 cd00885 cinA Competence-damage 40.3 85 0.0018 19.1 4.3 26 36-61 21-46 (170)
121 PRK03670 competence damage-ind 40.1 1E+02 0.0022 20.2 4.7 26 36-61 22-47 (252)
122 PRK10262 thioredoxin reductase 40.0 68 0.0015 20.9 4.0 28 27-54 8-36 (321)
123 PF13439 Glyco_transf_4: Glyco 39.7 39 0.00084 19.0 2.6 29 32-60 11-42 (177)
124 cd01483 E1_enzyme_family Super 39.2 34 0.00074 19.6 2.3 19 31-49 6-24 (143)
125 PF01619 Pro_dh: Proline dehyd 38.7 55 0.0012 21.7 3.5 42 28-69 254-297 (313)
126 cd02033 BchX Chlorophyllide re 38.6 45 0.00097 22.6 3.0 24 32-55 39-67 (329)
127 PF00899 ThiF: ThiF family; I 38.4 22 0.00047 20.3 1.4 19 30-48 8-26 (135)
128 PRK03673 hypothetical protein; 38.2 76 0.0017 22.2 4.2 26 35-60 22-47 (396)
129 TIGR02356 adenyl_thiF thiazole 36.9 36 0.00079 21.1 2.3 21 28-48 25-45 (202)
130 cd02150 NADPH_oxidoreductase_1 36.9 78 0.0017 18.6 3.6 39 31-69 91-129 (166)
131 KOG4764 Uncharacterized conser 36.2 26 0.00057 18.6 1.3 14 58-71 51-64 (70)
132 PRK07063 short chain dehydroge 36.2 88 0.0019 19.4 4.0 24 32-55 16-39 (260)
133 PRK12831 putative oxidoreducta 36.1 98 0.0021 21.7 4.5 29 27-55 142-171 (464)
134 PRK13231 nitrogenase reductase 36.0 15 0.00032 23.4 0.4 17 36-53 19-35 (264)
135 PRK08945 putative oxoacyl-(acy 35.8 91 0.002 19.2 4.0 24 32-55 21-44 (247)
136 PRK08277 D-mannonate oxidoredu 35.6 84 0.0018 19.7 3.8 24 32-55 19-42 (278)
137 TIGR02114 coaB_strep phosphopa 35.4 41 0.00088 21.4 2.3 25 30-54 22-46 (227)
138 TIGR01019 sucCoAalpha succinyl 35.2 1.4E+02 0.003 19.9 5.6 33 27-59 147-179 (286)
139 PF02558 ApbA: Ketopantoate re 35.0 41 0.0009 19.2 2.2 26 32-57 6-31 (151)
140 TIGR03329 Phn_aa_oxid putative 34.6 1.1E+02 0.0024 21.2 4.5 28 27-54 26-56 (460)
141 PF12831 FAD_oxidored: FAD dep 34.6 40 0.00086 23.3 2.3 21 36-56 11-31 (428)
142 PRK04148 hypothetical protein; 34.5 39 0.00084 20.1 2.0 23 30-53 23-45 (134)
143 cd00757 ThiF_MoeB_HesA_family 34.3 47 0.001 20.9 2.5 22 28-49 25-46 (228)
144 PRK09242 tropinone reductase; 33.9 91 0.002 19.3 3.8 24 32-55 18-41 (257)
145 PRK07035 short chain dehydroge 33.6 91 0.002 19.2 3.7 23 33-55 18-40 (252)
146 PRK06153 hypothetical protein; 33.3 40 0.00086 23.7 2.2 20 29-48 181-200 (393)
147 PRK08328 hypothetical protein; 33.0 50 0.0011 21.0 2.5 22 28-49 31-52 (231)
148 cd00755 YgdL_like Family of ac 32.9 34 0.00073 22.0 1.7 20 29-48 16-35 (231)
149 TIGR03815 CpaE_hom_Actino heli 32.8 52 0.0011 21.7 2.6 26 28-53 98-128 (322)
150 PRK12409 D-amino acid dehydrog 32.8 87 0.0019 21.1 3.7 23 33-55 9-32 (410)
151 PRK05867 short chain dehydroge 32.6 94 0.002 19.2 3.7 24 32-55 18-41 (253)
152 PRK01215 competence damage-ind 32.4 1.5E+02 0.0032 19.5 4.9 26 36-61 25-50 (264)
153 COG2117 Predicted subunit of t 32.2 73 0.0016 20.1 3.0 26 30-55 6-32 (198)
154 TIGR00137 gid_trmFO tRNA:m(5)U 32.1 86 0.0019 22.2 3.7 24 32-55 7-31 (433)
155 PRK06197 short chain dehydroge 31.8 97 0.0021 19.9 3.7 24 32-55 25-48 (306)
156 PF13614 AAA_31: AAA domain; P 31.3 65 0.0014 18.3 2.6 20 36-55 18-37 (157)
157 PRK06128 oxidoreductase; Provi 30.9 1.1E+02 0.0025 19.6 3.9 22 33-54 65-86 (300)
158 PF13450 NAD_binding_8: NAD(P) 30.9 74 0.0016 16.1 2.5 20 35-54 7-26 (68)
159 PF01134 GIDA: Glucose inhibit 30.8 63 0.0014 22.6 2.8 22 33-54 7-29 (392)
160 PRK07688 thiamine/molybdopteri 30.5 51 0.0011 22.3 2.3 21 28-48 28-48 (339)
161 PRK06732 phosphopantothenate-- 30.3 56 0.0012 20.8 2.4 25 30-54 23-47 (229)
162 TIGR02095 glgA glycogen/starch 30.3 67 0.0015 22.2 2.9 25 32-56 16-43 (473)
163 PRK05976 dihydrolipoamide dehy 30.1 55 0.0012 22.7 2.5 23 33-55 12-35 (472)
164 PRK07139 amidase; Provisional 30.0 46 0.001 23.2 2.1 58 1-63 83-143 (439)
165 PRK05192 tRNA uridine 5-carbox 29.8 56 0.0012 24.3 2.5 22 35-56 15-36 (618)
166 PF01494 FAD_binding_3: FAD bi 29.6 1.1E+02 0.0023 19.5 3.7 24 32-55 8-32 (356)
167 PRK00549 competence damage-ind 29.6 1.4E+02 0.0031 20.8 4.4 26 36-61 22-47 (414)
168 PRK08274 tricarballylate dehyd 29.4 59 0.0013 22.5 2.5 24 32-55 12-35 (466)
169 PRK06370 mercuric reductase; V 29.4 67 0.0014 22.2 2.8 24 32-55 12-36 (463)
170 PRK08644 thiamine biosynthesis 28.9 65 0.0014 20.2 2.5 21 29-49 33-53 (212)
171 TIGR02355 moeB molybdopterin s 28.8 65 0.0014 20.7 2.5 22 28-49 28-49 (240)
172 cd02035 ArsA ArsA ATPase funct 28.6 77 0.0017 19.7 2.8 20 36-55 16-35 (217)
173 PRK07478 short chain dehydroge 28.4 1.4E+02 0.003 18.4 3.9 24 32-55 15-38 (254)
174 smart00852 MoCF_biosynth Proba 28.4 1.2E+02 0.0026 17.2 4.2 25 36-60 20-44 (135)
175 PRK07832 short chain dehydroge 28.4 1.3E+02 0.0028 18.9 3.8 24 32-55 9-32 (272)
176 PRK00258 aroE shikimate 5-dehy 28.2 60 0.0013 21.1 2.3 28 29-56 128-156 (278)
177 cd01983 Fer4_NifH The Fer4_Nif 28.2 83 0.0018 15.8 2.5 19 36-54 16-34 (99)
178 PRK12475 thiamine/molybdopteri 28.2 59 0.0013 22.0 2.3 21 28-48 28-48 (338)
179 PRK06249 2-dehydropantoate 2-r 28.1 79 0.0017 20.8 2.9 25 31-55 12-36 (313)
180 PRK09078 sdhA succinate dehydr 27.9 64 0.0014 23.5 2.5 25 32-56 20-44 (598)
181 PRK07523 gluconate 5-dehydroge 27.8 1.4E+02 0.0029 18.5 3.8 24 32-55 19-42 (255)
182 PRK14027 quinate/shikimate deh 27.8 1.4E+02 0.0031 19.7 4.0 39 28-68 131-170 (283)
183 TIGR00345 arsA arsenite-activa 27.7 77 0.0017 20.7 2.7 23 36-58 2-24 (284)
184 TIGR01813 flavo_cyto_c flavocy 27.6 73 0.0016 21.8 2.7 25 32-56 7-32 (439)
185 PRK06949 short chain dehydroge 27.6 1.2E+02 0.0025 18.7 3.5 24 32-55 18-41 (258)
186 PRK06194 hypothetical protein; 27.5 1.4E+02 0.0031 18.7 3.9 23 33-55 16-38 (287)
187 PF04127 DFP: DNA / pantothena 27.3 69 0.0015 19.8 2.4 28 29-56 25-52 (185)
188 PRK08339 short chain dehydroge 27.2 1.4E+02 0.003 18.8 3.8 24 32-55 17-40 (263)
189 PRK06110 hypothetical protein; 27.2 1.9E+02 0.0042 19.2 4.7 30 30-59 76-105 (322)
190 PRK05708 2-dehydropantoate 2-r 27.2 87 0.0019 20.6 2.9 26 31-56 9-34 (305)
191 PF03033 Glyco_transf_28: Glyc 27.2 89 0.0019 17.4 2.7 19 37-55 16-34 (139)
192 PRK06116 glutathione reductase 27.1 67 0.0014 22.1 2.5 24 32-55 11-35 (450)
193 TIGR01424 gluta_reduc_2 glutat 27.1 72 0.0016 22.0 2.6 23 33-55 10-33 (446)
194 PRK08213 gluconate 5-dehydroge 27.1 1.3E+02 0.0028 18.6 3.6 24 32-55 21-44 (259)
195 PF03481 SUA5: Putative GTP-bi 27.0 1.3E+02 0.0028 17.1 3.6 43 29-71 73-122 (125)
196 PRK08641 sdhA succinate dehydr 26.9 69 0.0015 23.3 2.6 24 32-55 11-34 (589)
197 PRK08085 gluconate 5-dehydroge 26.9 1.5E+02 0.0032 18.3 3.8 24 32-55 18-41 (254)
198 TIGR01809 Shik-DH-AROM shikima 26.7 1.2E+02 0.0027 19.8 3.6 28 28-55 129-157 (282)
199 COG0680 HyaD Ni,Fe-hydrogenase 26.7 37 0.0008 20.7 1.0 16 56-71 14-29 (160)
200 PRK06292 dihydrolipoamide dehy 26.6 1.2E+02 0.0025 20.9 3.6 35 36-70 181-221 (460)
201 TIGR00200 cinA_nterm competenc 26.6 2E+02 0.0044 20.2 4.7 26 36-61 22-47 (413)
202 TIGR03018 pepcterm_TyrKin exop 26.6 78 0.0017 19.4 2.5 26 28-53 40-71 (207)
203 COG1192 Soj ATPases involved i 26.3 76 0.0017 20.0 2.5 25 29-53 8-38 (259)
204 COG0219 CspR Predicted rRNA me 26.3 96 0.0021 19.1 2.7 31 37-67 17-47 (155)
205 TIGR00507 aroE shikimate 5-deh 26.3 1.4E+02 0.0031 19.2 3.8 27 29-55 122-148 (270)
206 PLN02780 ketoreductase/ oxidor 26.2 1.4E+02 0.0029 19.8 3.7 24 32-55 62-85 (320)
207 PF09876 DUF2103: Predicted me 26.2 72 0.0016 18.2 2.1 29 43-71 70-101 (103)
208 PLN02681 proline dehydrogenase 26.0 1.4E+02 0.0031 21.2 4.0 41 29-69 384-426 (455)
209 PRK06124 gluconate 5-dehydroge 25.7 1.6E+02 0.0034 18.1 3.8 23 33-55 21-43 (256)
210 TIGR03364 HpnW_proposed FAD de 25.6 92 0.002 20.5 2.8 21 35-55 11-31 (365)
211 PLN03050 pyridoxine (pyridoxam 25.5 87 0.0019 20.3 2.6 24 31-54 71-94 (246)
212 COG1249 Lpd Pyruvate/2-oxoglut 25.5 2.6E+02 0.0055 20.0 5.9 44 27-70 175-225 (454)
213 PRK08626 fumarate reductase fl 25.4 74 0.0016 23.5 2.5 27 31-57 12-38 (657)
214 PRK06196 oxidoreductase; Provi 25.2 1.7E+02 0.0036 19.0 4.0 24 32-55 35-58 (315)
215 cd08770 DAP_dppA_3 Peptidase M 25.1 1E+02 0.0022 20.4 2.9 33 33-68 134-166 (263)
216 TIGR02667 moaB_proteo molybden 25.1 1.6E+02 0.0035 17.7 3.6 24 38-61 26-49 (163)
217 PRK08643 acetoin reductase; Va 24.9 1.8E+02 0.0038 17.9 4.0 24 32-55 11-34 (256)
218 PRK06701 short chain dehydroge 24.9 1.8E+02 0.0039 18.7 4.1 24 33-56 56-79 (290)
219 PRK06481 fumarate reductase fl 24.9 77 0.0017 22.4 2.5 26 30-55 67-92 (506)
220 COG1179 Dinucleotide-utilizing 24.7 67 0.0015 21.4 2.0 22 28-49 34-55 (263)
221 COG0062 Uncharacterized conser 24.6 91 0.002 19.8 2.6 37 32-68 61-98 (203)
222 cd03791 GT1_Glycogen_synthase_ 24.5 1E+02 0.0022 21.1 3.0 29 31-59 14-45 (476)
223 PRK06467 dihydrolipoamide dehy 24.4 84 0.0018 22.0 2.6 23 33-55 12-35 (471)
224 PRK14569 D-alanyl-alanine synt 24.4 1.2E+02 0.0027 19.7 3.2 20 35-54 23-42 (296)
225 PRK06139 short chain dehydroge 24.4 1.4E+02 0.0031 19.8 3.6 24 32-55 16-39 (330)
226 PRK08401 L-aspartate oxidase; 24.3 79 0.0017 22.1 2.4 25 32-56 9-33 (466)
227 PLN02520 bifunctional 3-dehydr 24.2 1.1E+02 0.0025 22.0 3.2 26 30-55 385-410 (529)
228 PRK07109 short chain dehydroge 24.2 1.4E+02 0.003 19.8 3.5 24 32-55 17-40 (334)
229 PF14272 Gly_rich_SFCGS: Glyci 23.8 1.1E+02 0.0024 17.5 2.5 34 34-67 10-44 (115)
230 PF07283 TrbH: Conjugal transf 23.7 61 0.0013 19.0 1.5 17 55-71 31-47 (121)
231 PRK10765 nitroreductase A; Pro 23.7 1.9E+02 0.0041 18.4 3.9 36 32-69 108-143 (240)
232 PTZ00139 Succinate dehydrogena 23.6 84 0.0018 23.0 2.5 28 29-56 34-61 (617)
233 PRK12548 shikimate 5-dehydroge 23.6 99 0.0022 20.3 2.7 26 30-55 132-158 (289)
234 PF03610 EIIA-man: PTS system 23.5 1.2E+02 0.0026 16.8 2.7 28 28-55 63-90 (116)
235 PRK07804 L-aspartate oxidase; 23.4 88 0.0019 22.4 2.5 26 32-57 24-49 (541)
236 cd08769 DAP_dppA_2 Peptidase M 23.4 1.2E+02 0.0025 20.3 2.9 33 33-68 134-166 (270)
237 COG4998 Predicted endonuclease 23.4 2E+02 0.0044 18.1 4.2 36 33-69 58-94 (209)
238 PRK07985 oxidoreductase; Provi 23.3 1.7E+02 0.0038 18.8 3.8 22 33-54 59-80 (294)
239 PRK07453 protochlorophyllide o 23.3 1.7E+02 0.0037 19.0 3.7 24 32-55 15-38 (322)
240 TIGR02485 CobZ_N-term precorri 23.3 88 0.0019 21.4 2.5 25 32-56 4-28 (432)
241 TIGR03736 PRTRC_ThiF PRTRC sys 23.1 66 0.0014 20.9 1.8 20 28-47 15-34 (244)
242 PRK05678 succinyl-CoA syntheta 23.0 2.4E+02 0.0052 18.8 5.5 33 27-59 149-181 (291)
243 COG3319 Thioesterase domains o 22.8 1.2E+02 0.0025 20.0 2.9 25 33-57 76-100 (257)
244 PRK07843 3-ketosteroid-delta-1 22.8 88 0.0019 22.5 2.5 24 32-55 15-38 (557)
245 COG0320 LipA Lipoate synthase 22.7 1.4E+02 0.003 20.4 3.2 26 36-61 102-127 (306)
246 COG0492 TrxB Thioredoxin reduc 22.6 1.5E+02 0.0033 19.8 3.4 36 35-70 154-189 (305)
247 TIGR00197 yjeF_nterm yjeF N-te 22.5 1.9E+02 0.0041 18.0 3.7 25 31-55 56-80 (205)
248 PRK06172 short chain dehydroge 22.3 2E+02 0.0043 17.7 3.8 24 32-55 16-39 (253)
249 PRK05335 tRNA (uracil-5-)-meth 22.1 1.1E+02 0.0023 21.9 2.7 21 35-55 13-33 (436)
250 TIGR03140 AhpF alkyl hydropero 21.9 1.2E+02 0.0025 21.6 2.9 28 27-54 214-242 (515)
251 PRK06452 sdhA succinate dehydr 21.9 1E+02 0.0022 22.3 2.6 25 32-56 13-37 (566)
252 cd00281 DAP_dppA Peptidase M55 21.9 1.3E+02 0.0028 20.0 2.9 33 33-68 133-165 (265)
253 PRK11749 dihydropyrimidine deh 21.9 2.2E+02 0.0048 19.7 4.2 29 27-55 142-171 (457)
254 PTZ00058 glutathione reductase 21.9 1.5E+02 0.0033 21.6 3.5 27 29-55 52-79 (561)
255 PRK07814 short chain dehydroge 21.8 2.1E+02 0.0046 17.8 3.9 24 32-55 19-42 (263)
256 PRK05866 short chain dehydroge 21.8 1.8E+02 0.0039 18.7 3.6 24 32-55 49-72 (293)
257 PRK07251 pyridine nucleotide-d 21.7 96 0.0021 21.2 2.4 23 33-55 11-34 (438)
258 PRK07573 sdhA succinate dehydr 21.6 98 0.0021 22.8 2.5 25 31-55 42-66 (640)
259 PTZ00052 thioredoxin reductase 21.6 97 0.0021 21.9 2.5 24 32-55 12-36 (499)
260 PLN00128 Succinate dehydrogena 21.6 98 0.0021 22.9 2.5 25 32-56 58-82 (635)
261 TIGR01421 gluta_reduc_1 glutat 21.6 1E+02 0.0022 21.4 2.5 23 33-55 10-33 (450)
262 KOG2941 Beta-1,4-mannosyltrans 21.6 98 0.0021 22.0 2.4 24 37-60 30-53 (444)
263 TIGR02053 MerA mercuric reduct 21.5 1E+02 0.0022 21.3 2.5 21 35-55 11-31 (463)
264 PLN02253 xanthoxin dehydrogena 21.4 2.2E+02 0.0047 17.8 3.9 23 33-55 28-50 (280)
265 KOG3302 TATA-box binding prote 21.3 1E+02 0.0022 19.7 2.3 17 36-52 94-110 (200)
266 TIGR01350 lipoamide_DH dihydro 21.2 1E+02 0.0022 21.2 2.4 23 33-55 9-32 (461)
267 PRK07831 short chain dehydroge 21.2 2.2E+02 0.0047 17.6 3.9 21 34-54 29-49 (262)
268 PF02737 3HCDH_N: 3-hydroxyacy 21.2 1.1E+02 0.0024 18.5 2.4 24 32-55 7-30 (180)
269 TIGR01811 sdhA_Bsu succinate d 21.2 1.1E+02 0.0024 22.3 2.7 26 32-57 6-31 (603)
270 PRK12823 benD 1,6-dihydroxycyc 21.2 2.2E+02 0.0047 17.6 4.1 24 32-55 17-40 (260)
271 KOG1466 Translation initiation 21.1 1.2E+02 0.0026 20.6 2.6 25 29-53 163-187 (313)
272 cd02042 ParA ParA and ParB of 21.0 1.4E+02 0.003 15.8 2.6 19 36-54 17-35 (104)
273 TIGR00292 thiazole biosynthesi 21.0 1.1E+02 0.0023 19.8 2.4 21 35-55 32-52 (254)
274 PF15446 zf-PHD-like: PHD/FYVE 20.8 74 0.0016 19.9 1.5 23 39-61 25-50 (175)
275 PRK09126 hypothetical protein; 20.8 1.1E+02 0.0025 20.2 2.6 24 32-55 10-34 (392)
276 TIGR01377 soxA_mon sarcosine o 20.8 1.1E+02 0.0024 20.2 2.5 21 35-55 11-31 (380)
277 TIGR01831 fabG_rel 3-oxoacyl-( 20.7 2.1E+02 0.0046 17.3 3.7 25 32-56 7-31 (239)
278 PRK08223 hypothetical protein; 20.7 79 0.0017 21.2 1.8 22 28-49 31-52 (287)
279 PRK08849 2-octaprenyl-3-methyl 20.6 1.2E+02 0.0026 20.3 2.7 25 32-56 10-35 (384)
280 KOG2672 Lipoate synthase [Coen 20.6 1.2E+02 0.0025 20.9 2.5 25 37-61 145-169 (360)
281 PRK11259 solA N-methyltryptoph 20.6 1.1E+02 0.0023 20.1 2.4 21 35-55 14-34 (376)
282 PRK13394 3-hydroxybutyrate deh 20.5 2.2E+02 0.0048 17.4 4.1 24 32-55 16-39 (262)
283 COG2423 Predicted ornithine cy 20.4 2.9E+02 0.0063 18.9 4.4 35 36-70 115-150 (330)
284 PRK08010 pyridine nucleotide-d 20.4 1.2E+02 0.0025 20.9 2.6 23 33-55 11-34 (441)
285 PRK06115 dihydrolipoamide dehy 20.4 1.1E+02 0.0024 21.3 2.5 23 33-55 11-34 (466)
286 COG2604 Uncharacterized protei 20.3 1.5E+02 0.0032 22.2 3.1 26 29-54 333-360 (594)
287 PF00549 Ligase_CoA: CoA-ligas 20.3 1.4E+02 0.0029 18.1 2.6 24 47-70 33-66 (153)
288 PRK08958 sdhA succinate dehydr 20.3 1.1E+02 0.0024 22.2 2.6 25 32-56 15-39 (588)
289 PRK05690 molybdopterin biosynt 20.2 1.2E+02 0.0025 19.5 2.5 21 29-49 37-57 (245)
290 PRK13369 glycerol-3-phosphate 20.2 1.1E+02 0.0024 21.5 2.5 23 33-55 15-37 (502)
291 KOG3022 Predicted ATPase, nucl 20.1 1.1E+02 0.0025 20.7 2.4 18 36-53 65-82 (300)
292 COG0154 GatA Asp-tRNAAsn/Glu-t 20.0 92 0.002 22.2 2.1 45 1-45 120-167 (475)
293 COG4743 Predicted membrane pro 20.0 72 0.0016 21.4 1.5 33 11-43 188-220 (316)
No 1
>PRK09954 putative kinase; Provisional
Probab=99.75 E-value=7.2e-18 Score=111.86 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=62.1
Q ss_pred CEEeceeceeEeecC-CCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPS-IPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~-~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|++++|++++++ +.|.+++ .+.++...+||+++|+|++++|||.++.|+++||+|.+|+++++.|++
T Consensus 61 ~viG~~~vD~~~~~~~~~p~~~~-~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~ 131 (362)
T PRK09954 61 VVVGAINMDIRGMADIRYPQAAS-HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRR 131 (362)
T ss_pred EEEEEEEEEEEEeeCCcCcCCCC-CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHH
Confidence 489999999999987 4454444 566888999999999999999999999999999999999999999874
No 2
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.74 E-value=9.7e-18 Score=106.55 Aligned_cols=71 Identities=27% Similarity=0.332 Sum_probs=64.5
Q ss_pred CEEeceeceeEeecCCCCCCCcc-eeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~-~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++++++++|.+++. ....+...+||+++|+|++++|||.++.+++++|+|.+|+++++.|++
T Consensus 3 l~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~ 74 (265)
T cd01947 3 AVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES 74 (265)
T ss_pred EEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh
Confidence 58999999999999987777655 445889999999999999999999999999999999999999999874
No 3
>PRK09850 pseudouridine kinase; Provisional
Probab=99.74 E-value=9e-18 Score=109.34 Aligned_cols=71 Identities=30% Similarity=0.483 Sum_probs=64.5
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|++++|++++++.+++.++..+......+||+++|+|++++|||.++.++++||+|.+|+++++.|++
T Consensus 8 ~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~ 78 (313)
T PRK09850 8 VIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQ 78 (313)
T ss_pred EEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHH
Confidence 58999999999998776666667777888999999999999999999999999999999999999999873
No 4
>PRK11142 ribokinase; Provisional
Probab=99.73 E-value=1.4e-17 Score=107.53 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=64.8
Q ss_pred CEEeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++++++++|.+++.... ++...+||++.|+|++|+|||.++.+++.+|+|.+|+++++.|++
T Consensus 6 ~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~ 77 (306)
T PRK11142 6 VVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAK 77 (306)
T ss_pred EEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHH
Confidence 58999999999999988777766554 788899999999999999999999999999999999999999874
No 5
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.73 E-value=2.1e-17 Score=106.39 Aligned_cols=71 Identities=20% Similarity=0.135 Sum_probs=63.9
Q ss_pred CEEeceeceeEeecCCCCCCCccee-ceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~-~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|+++++++.|.+++... ......+||+++|+|++++|||.++.+++++|+|.+|+++++.|++
T Consensus 3 ~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~ 74 (290)
T cd01939 3 LCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQS 74 (290)
T ss_pred EEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHH
Confidence 5899999999999998777666544 3677889999999999999999999999999999999999999974
No 6
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.71 E-value=5e-17 Score=104.36 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=63.5
Q ss_pred CEEeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++.++++.|.++..... .+...+|| +.|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 ~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~ 73 (289)
T cd01944 3 LVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRD 73 (289)
T ss_pred EEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHH
Confidence 58999999999999987777666554 78999999 999999999999999999999999999999999873
No 7
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.7e-17 Score=109.81 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=65.9
Q ss_pred CEEeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|++++|++.+.++.|.++++... .+...+||+++|+|++++|||.++.||++||+|.||+.+++.|+.
T Consensus 13 v~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~ 84 (330)
T KOG2855|consen 13 VVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQ 84 (330)
T ss_pred EEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhh
Confidence 58999999999999998888777665 899999999999999999999999999999999999999999873
No 8
>PTZ00292 ribokinase; Provisional
Probab=99.70 E-value=5.5e-17 Score=105.93 Aligned_cols=71 Identities=25% Similarity=0.237 Sum_probs=64.5
Q ss_pred CEEeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|+++.+++.|.++++... .+...+||++.|+|++++|||.++.++++||+|.+|+++++.|++
T Consensus 19 lviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~ 90 (326)
T PTZ00292 19 VVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKR 90 (326)
T ss_pred EEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHH
Confidence 58999999999999987777766554 678899999999999999999999999999999999999999874
No 9
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.70 E-value=6.1e-17 Score=103.72 Aligned_cols=71 Identities=28% Similarity=0.378 Sum_probs=64.1
Q ss_pred CEEeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|+++.+++.|.+++.... .+...+||++.|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 l~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~ 74 (292)
T cd01174 3 VVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLRE 74 (292)
T ss_pred EEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHH
Confidence 58999999999999887777666655 778899999999999999999999999999999999999999863
No 10
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.70 E-value=7.9e-17 Score=103.02 Aligned_cols=71 Identities=30% Similarity=0.423 Sum_probs=64.3
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|.+++|+++.++++|.+++..+......+||+++|+|++++|||.++.+++++|+|.+|+.+++.|++
T Consensus 3 ~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~ 73 (288)
T cd01941 3 VVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEK 73 (288)
T ss_pred EEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHH
Confidence 58999999999999887766666666778999999999999999999999999999999999999999874
No 11
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.69 E-value=1.6e-16 Score=101.54 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=63.8
Q ss_pred CEEeceeceeEeecCCCCCCCcc-eeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~-~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++.++++.|..++. ....+...+||++.|+|.+++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 ~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~ 74 (284)
T cd01945 3 LGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAA 74 (284)
T ss_pred EEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHH
Confidence 58999999999999886666555 445899999999999999999999999999999999999999999863
No 12
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.68 E-value=1.4e-16 Score=101.55 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=64.0
Q ss_pred CEEeceeceeEeecCCCCCCCcc-eeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~-~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|+++++++.|.+++. ...+....+||++.|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 ~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~ 74 (279)
T cd01942 3 AVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELRE 74 (279)
T ss_pred EEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHH
Confidence 58999999999999987766544 455899999999999999999999999999999999999999999873
No 13
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.68 E-value=5.3e-17 Score=105.36 Aligned_cols=71 Identities=25% Similarity=0.370 Sum_probs=61.4
Q ss_pred CEEeceeceeEeecCCCC------CCCcceec------------eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhH
Q 035160 1 MIIGGMVLDIHATPSIPA------NPRTTTLG------------KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVG 62 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~------~~~~~~~~------------~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G 62 (71)
+|+|++++|+++++++.| .++++... .....+||+++|+|++++|||.++.+++++|+|.+|
T Consensus 5 ~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D~~g 84 (312)
T cd01168 5 LGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDDKLG 84 (312)
T ss_pred EEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccChhH
Confidence 589999999999998865 33444333 368889999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 035160 63 DFAFYFVVS 71 (71)
Q Consensus 63 ~~i~~~l~~ 71 (71)
+++++.|++
T Consensus 85 ~~i~~~l~~ 93 (312)
T cd01168 85 DFLLKDLRA 93 (312)
T ss_pred HHHHHHHHH
Confidence 999999874
No 14
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.63 E-value=7.1e-16 Score=105.00 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=61.7
Q ss_pred CEEeceeceeEeecCC-------CCCCC-------------cceec-eeeEeeCChHHHHHHHHHhcC--------CccE
Q 035160 1 MIIGGMVLDIHATPSI-------PANPR-------------TTTLG-KANYVLGGVARNVAECMSKLG--------AKPY 51 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~-------~~~~~-------------~~~~~-~~~~~~GG~a~N~A~~l~rLG--------~~~~ 51 (71)
+++|++++|++..+++ .|..+ ++... .+...+||+++|+|++++||| .++.
T Consensus 73 l~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~~~~~v~ 152 (426)
T PLN02813 73 LGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAGPALNVA 152 (426)
T ss_pred EEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccCCCCcEE
Confidence 5899999999999987 66655 22233 677899999999999999999 7999
Q ss_pred EEEeecCChhHHHHHHHhhC
Q 035160 52 MISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 52 lis~vG~D~~G~~i~~~l~~ 71 (71)
|+++||+|.+|+++++.|++
T Consensus 153 ~ig~VG~D~~G~~i~~~L~~ 172 (426)
T PLN02813 153 MAGSVGSDPLGDFYRTKLRR 172 (426)
T ss_pred EEEEeCCChHHHHHHHHHHH
Confidence 99999999999999999874
No 15
>PTZ00247 adenosine kinase; Provisional
Probab=99.63 E-value=8.6e-16 Score=101.35 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=59.7
Q ss_pred CEEeceeceeEeecCC------CCCCCcceec-e--------------eeEeeCChHHHHHHHHHhcC---C-ccEEEEe
Q 035160 1 MIIGGMVLDIHATPSI------PANPRTTTLG-K--------------ANYVLGGVARNVAECMSKLG---A-KPYMISA 55 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~------~~~~~~~~~~-~--------------~~~~~GG~a~N~A~~l~rLG---~-~~~lis~ 55 (71)
+|||++++|+++++++ .|..+++... . +...+||+++|+|++++||| . ++.|+++
T Consensus 9 ~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~v~~ig~ 88 (345)
T PTZ00247 9 LGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGFVCYVGC 88 (345)
T ss_pred EEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 5899999999999985 3555554433 3 37899999999999999885 5 9999999
Q ss_pred ecCChhHHHHHHHhhC
Q 035160 56 LGLDMVGDFAFYFVVS 71 (71)
Q Consensus 56 vG~D~~G~~i~~~l~~ 71 (71)
||+|.+|+++++.|++
T Consensus 89 vG~D~~G~~i~~~l~~ 104 (345)
T PTZ00247 89 VGDDRFAEILKEAAEK 104 (345)
T ss_pred eccchhHHHHHHHHHH
Confidence 9999999999999874
No 16
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.62 E-value=1.4e-15 Score=97.39 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=63.4
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++..++++ .++.....+....+||++.|+|+++++||.++.+++.+|+|.+|+.+++.|++
T Consensus 5 ~~iG~~~iD~~~~~~~~-~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~ 74 (301)
T PF00294_consen 5 LVIGEVNIDIIGYVDRF-KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKE 74 (301)
T ss_dssp EEESEEEEEEEEESSSH-TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEECccceEEEeecCCc-CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccc
Confidence 58999999999999887 55555556899999999999999999999999999999999999999999873
No 17
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.5e-15 Score=98.48 Aligned_cols=71 Identities=32% Similarity=0.425 Sum_probs=61.9
Q ss_pred CEEeceeceeEee-cCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHAT-PSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~-~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|++++|++.+ .+.+|.+++.... .+...+||+++|+|++++|||.++.|+++||+|.+|+++++.|++
T Consensus 3 ~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~ 75 (311)
T COG0524 3 VVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRK 75 (311)
T ss_pred EEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHH
Confidence 4899999999997 5556666655554 678889999999999999999999999999999999999999874
No 18
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.60 E-value=1.7e-15 Score=97.38 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=61.0
Q ss_pred EEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 2 IIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 2 ~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
++++.++|+++++++++..+..........+||+++|+|++++|||.++.+++.+|+| +|+++++.|++
T Consensus 5 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~ 73 (289)
T cd01164 5 VTLNPAIDLTIELDQLQPGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKE 73 (289)
T ss_pred EecChHHeEEEEcCcccCCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHH
Confidence 6799999999999997654444445888999999999999999999999999999998 89999999874
No 19
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.60 E-value=1.9e-15 Score=103.88 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=59.1
Q ss_pred CEEeceeceeEeecCCCCCCCcce------------eceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHH
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTT------------LGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~------------~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
+++|++++|+++++++.|.+++.. +......+|| ++|+|++++|||.++.++++||+|.+|+++++.
T Consensus 76 l~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G~~i~~~ 154 (470)
T PLN02341 76 ATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYGKFLLDV 154 (470)
T ss_pred EEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHHHHHHHH
Confidence 589999999999999877765421 1345556788 689999999999999999999999999999999
Q ss_pred hhC
Q 035160 69 VVS 71 (71)
Q Consensus 69 l~~ 71 (71)
|++
T Consensus 155 L~~ 157 (470)
T PLN02341 155 LAE 157 (470)
T ss_pred HHH
Confidence 874
No 20
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.60 E-value=3.7e-15 Score=95.71 Aligned_cols=68 Identities=28% Similarity=0.329 Sum_probs=62.5
Q ss_pred eceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 4 GGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 4 G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
|.+++|+++.++++|.+++.+.. .+...+||++.|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~ 69 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKS 69 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHH
Confidence 78999999999998887777665 788999999999999999999999999999999999999999863
No 21
>PLN02967 kinase
Probab=99.59 E-value=1.9e-15 Score=106.21 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=59.3
Q ss_pred CEEeceeceeEeecC--CCCCCC---------cceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHh
Q 035160 1 MIIGGMVLDIHATPS--IPANPR---------TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~--~~~~~~---------~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l 69 (71)
+|+|.+++|++.... ..+..+ ++.+..+...+||+++|+|++|+|||.++.|+++||+|.+|+++++.|
T Consensus 200 ~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll~~L 279 (581)
T PLN02967 200 CCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAMLYYL 279 (581)
T ss_pred EEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHH
Confidence 589999999976432 111112 456678999999999999999999999999999999999999999998
Q ss_pred hC
Q 035160 70 VS 71 (71)
Q Consensus 70 ~~ 71 (71)
++
T Consensus 280 ~~ 281 (581)
T PLN02967 280 NV 281 (581)
T ss_pred HH
Confidence 74
No 22
>PLN02323 probable fructokinase
Probab=99.58 E-value=3.4e-15 Score=97.76 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=58.3
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|.+++|++..+++.|.. ....+...+||+++|+|++++|||.++.++++||+|.+|+++++.|++
T Consensus 14 ~~iG~~~vD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~ 81 (330)
T PLN02323 14 VCFGEMLIDFVPTVSGVSLA---EAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKK 81 (330)
T ss_pred EEechhhhhhccCCCCCCcc---cccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHH
Confidence 58999999999877654331 123567889999999999999999999999999999999999999874
No 23
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.57 E-value=4.3e-15 Score=95.13 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=57.6
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|++++|+++..+.. .....+....+||+++|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 ~~iG~~~iD~~~~~~~~----~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~ 69 (294)
T cd01166 3 VTIGEVMVDLSPPGGGR----LEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRR 69 (294)
T ss_pred EEechhheeeecCCCCc----cchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 58999999998765422 23345777889999999999999999999999999999999999999863
No 24
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.56 E-value=1.5e-14 Score=93.22 Aligned_cols=70 Identities=26% Similarity=0.387 Sum_probs=56.5
Q ss_pred CEEeceeceeEeecC--CCCCC--C-cceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPS--IPANP--R-TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~--~~~~~--~-~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|..++|++++++ +.++. . ..........+|| ++|+|.+++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 l~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~ 77 (304)
T cd01172 3 LVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEK 77 (304)
T ss_pred EEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHh
Confidence 589999999999863 32222 1 1122357778999 589999999999999999999999999999999874
No 25
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.55 E-value=1.1e-14 Score=93.36 Aligned_cols=64 Identities=27% Similarity=0.364 Sum_probs=57.1
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|+++.+++. +......+||+++|+|.++++||.++.+++++|+|.+|+++++.|++
T Consensus 3 lviG~~~~D~~~~~~~~-------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~ 66 (295)
T cd01167 3 VCFGEALIDFIPEGSGA-------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKE 66 (295)
T ss_pred EEEcceeEEEecCCCCC-------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHH
Confidence 58999999999776543 45677889999999999999999999999999999999999999864
No 26
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.55 E-value=1.3e-14 Score=93.42 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=59.0
Q ss_pred EeceeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 3 IGGMVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 3 iG~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
.=+.++|++++++++| +++.... .+...+||+++|+|++++|||.++.|+++||+| +|+.+++.|++
T Consensus 5 ~~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~ 72 (304)
T TIGR03828 5 TLNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLRE 72 (304)
T ss_pred EcchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHH
Confidence 3357899999999977 6666554 889999999999999999999999999999999 69999999874
No 27
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.54 E-value=9.5e-15 Score=101.27 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=57.4
Q ss_pred CEEeceeceeEeecCCCCCC-----------CcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHh
Q 035160 1 MIIGGMVLDIHATPSIPANP-----------RTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~-----------~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l 69 (71)
+|+|.+.+|++........+ -+-.+..+...+||+++|+|++++|||.++.|+++||+|.+|+++++.|
T Consensus 129 ~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l~~~L 208 (496)
T PLN02543 129 CCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEELVLMM 208 (496)
T ss_pred EEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHH
Confidence 58999999998864321110 0012346888999999999999999999999999999999999999998
Q ss_pred hC
Q 035160 70 VS 71 (71)
Q Consensus 70 ~~ 71 (71)
++
T Consensus 209 ~~ 210 (496)
T PLN02543 209 NK 210 (496)
T ss_pred HH
Confidence 74
No 28
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.54 E-value=3e-14 Score=97.33 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=57.5
Q ss_pred CEEeceeceeEeecC--CC-C-CCCcc-eeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPS--IP-A-NPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~--~~-~-~~~~~-~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++++.+ +. + .+... ....+.+.+|| ++|+|++++|||.++.|++.+|+|.+|+++++.|++
T Consensus 14 lviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~ 88 (473)
T PRK11316 14 LVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAA 88 (473)
T ss_pred EEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 589999999999863 21 2 22222 33478888999 699999999999999999999999999999999974
No 29
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.53 E-value=3.9e-14 Score=91.88 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=56.3
Q ss_pred CEEeceeceeEee--cCCC-C-CCCcc-eeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHAT--PSIP-A-NPRTT-TLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~--~~~~-~-~~~~~-~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++++ +++. + .+... ........+|| ++|+|.+++|||.++.++|.||+|.+|+++++.|++
T Consensus 11 l~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~ 85 (315)
T TIGR02198 11 LVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLAE 85 (315)
T ss_pred EEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHH
Confidence 5899999999987 4442 2 12222 23366778899 799999999999999999999999999999999864
No 30
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.50 E-value=4.2e-14 Score=89.96 Aligned_cols=58 Identities=28% Similarity=0.252 Sum_probs=51.9
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|.+++|++.+.. +..+||++.|+|++++|||.++.++|+||+|.+|+++++.|++
T Consensus 4 ~~iG~~~~D~~~~~~-------------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~ 61 (260)
T PRK09813 4 ATIGDNCVDIYPQLG-------------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLAR 61 (260)
T ss_pred EEeccceeeecccCC-------------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHH
Confidence 589999999986532 1578999999999999999999999999999999999999874
No 31
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.46 E-value=1.2e-13 Score=87.63 Aligned_cols=58 Identities=29% Similarity=0.283 Sum_probs=52.1
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|.+++|++... ....+||+++|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 3 ~~iG~~~~D~~~~~-------------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~ 60 (264)
T cd01940 3 AAIGDNVVDKYLHL-------------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKR 60 (264)
T ss_pred EEEcceEEEEeccC-------------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHH
Confidence 58999999998541 35678999999999999999999999999999999999999874
No 32
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.45 E-value=2.1e-13 Score=88.17 Aligned_cols=61 Identities=25% Similarity=0.366 Sum_probs=52.6
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|.+++|++.. ++ ..+...+||++.|+|++++|||.++.+++.+|+|.+|+++++.|++
T Consensus 6 l~iG~~~iD~~~~------~~----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~ 66 (304)
T PRK09434 6 WVLGDAVVDLIPE------GE----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQD 66 (304)
T ss_pred EEecchheeeecC------CC----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHH
Confidence 5899999999821 11 2455679999999999999999999999999999999999999874
No 33
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.45 E-value=1.9e-13 Score=88.33 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=56.2
Q ss_pred ceeceeEeecCCCCCCCccee-ceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 5 GMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~-~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
..++|++++++++ ..++... ......+||.+.|+|++++|||.++.+++.+|+| +|+.+++.|++
T Consensus 7 ~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~ 72 (303)
T TIGR03168 7 NPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAE 72 (303)
T ss_pred chHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHH
Confidence 4578999999986 4455544 4788999999999999999999999999999999 79999999874
No 34
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.43 E-value=3.4e-13 Score=87.63 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=56.1
Q ss_pred ceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 5 GMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+.++|+++.+++.+..+.....++...+||+++|+|++++|||.++.+++.+|+| +|+++++.|++
T Consensus 7 ~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~ 72 (309)
T TIGR01231 7 NPSVDISYPLTALKLDTVNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDH 72 (309)
T ss_pred chHHeEEEEcCCeeeCceEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHH
Confidence 4678999988886555533334799999999999999999999999999999974 99999999874
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.43 E-value=5.3e-13 Score=86.77 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=57.6
Q ss_pred EeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 3 IGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 3 iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
--+.++|.++.+++.+..+......+...+||+++|+|++++|||.++.+++.+|+ .+|+++++.|++
T Consensus 6 t~np~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~ 73 (309)
T PRK13508 6 TLNPSIDISYPLDELKLDTVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD 73 (309)
T ss_pred ecChHHeEEEEeCCeeeCCeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc
Confidence 34678999999998655543234478899999999999999999999999999995 789999999874
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.42 E-value=4.3e-13 Score=87.29 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=55.5
Q ss_pred ceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 5 GMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
+.++|+++++++.|+.+......+.+.+||++.|+|++++|||.++.++|.+|+|.+|++ ++.|+
T Consensus 11 ~p~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~ 75 (312)
T PRK09513 11 NPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFS 75 (312)
T ss_pred ChHHeEEEEcCceecCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHH
Confidence 467899999998764333344588999999999999999999999999999999999997 56775
No 37
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.42 E-value=4.9e-13 Score=84.52 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=49.4
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
+++|.+++|++..+. .....+||+++|+|++++|||.++.++|.+|+|.+|+ ++.|+
T Consensus 3 l~iG~~~iD~~~~~~-----------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~ 59 (254)
T cd01937 3 VIIGHVTIDEIVTNG-----------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLF 59 (254)
T ss_pred EEEcceeEEEEecCC-----------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHH
Confidence 589999999997631 3467889999999999999999999999999999998 45554
No 38
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.37 E-value=1.2e-12 Score=83.79 Aligned_cols=59 Identities=24% Similarity=0.435 Sum_probs=49.5
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|.+++|++..+ ..+....+||+++|+|++++||| ++.+++.+|+| +|+.++++|++
T Consensus 3 ~~~G~~~~D~~~~~----------~~~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~ 61 (277)
T cd01946 3 LVVGSVAFDAIETP----------FGKVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNS 61 (277)
T ss_pred EEEEEeeeeeecCC----------CceeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHh
Confidence 58999999999211 11245778999999999999998 79999999999 89999999874
No 39
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.36 E-value=1.4e-12 Score=84.80 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=56.8
Q ss_pred ceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 5 GMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 5 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+..+|+++++++.+..+..........+||+++|+|++++|||.++.+++.+|+ .+|+++++.|++
T Consensus 10 ~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~ 75 (309)
T PRK10294 10 APSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLAD 75 (309)
T ss_pred ChHHeEEEEeCceeeCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHH
Confidence 457899999998654444555678889999999999999999999999999996 799999999874
No 40
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.26 E-value=1.6e-11 Score=74.47 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=48.2
Q ss_pred CEEeceeceeEeecCCCCCCCcce-eceeeEeeCChHHHHHHHHHhcCCccEEEE
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTT-LGKANYVLGGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~-~~~~~~~~GG~a~N~A~~l~rLG~~~~lis 54 (71)
+++|..++|++++++++|.+++.. ..+.+..+||++.|+|.+++|||.++.+++
T Consensus 3 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 3 LVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG 57 (196)
T ss_pred EEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE
Confidence 589999999999999877776554 458899999999999999999999999987
No 41
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.23 E-value=3.7e-11 Score=82.44 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=54.0
Q ss_pred CEEeceeceeEeecCC-C-----CCCCcce-ece----------------eeEeeCChHHHHHHHHHhcC-CccEEEEee
Q 035160 1 MIIGGMVLDIHATPSI-P-----ANPRTTT-LGK----------------ANYVLGGVARNVAECMSKLG-AKPYMISAL 56 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~-~-----~~~~~~~-~~~----------------~~~~~GG~a~N~A~~l~rLG-~~~~lis~v 56 (71)
+++|++.+|+...++. . ...+... ... ....+||+++|+|++++||| .++.|+++|
T Consensus 37 ~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~~fig~V 116 (434)
T PRK15074 37 VGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRSVLLGVM 116 (434)
T ss_pred EEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHcCCCCeEEEEEe
Confidence 4789999999998863 1 1111111 111 34568999999999999996 999999999
Q ss_pred cCC-hhHHHHHHHhh
Q 035160 57 GLD-MVGDFAFYFVV 70 (71)
Q Consensus 57 G~D-~~G~~i~~~l~ 70 (71)
|+| .+|+++++.|+
T Consensus 117 GdDd~~G~~~~~~L~ 131 (434)
T PRK15074 117 SSNIEIGSYAYRYLC 131 (434)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999 79999999885
No 42
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.21 E-value=7.9e-12 Score=82.48 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=52.2
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhc-CC--cc--EEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKL-GA--KP--YMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rL-G~--~~--~lis~vG~D~~G~~i~~~l~~ 71 (71)
+++|.+.+|++...+. ..+...+||+++|+|++++|| |. ++ .+++++|+| +|+++++.|++
T Consensus 3 ~~~G~~~~d~i~~~~~---------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~ 68 (328)
T cd01943 3 TTLGMFIIDEIEYPDS---------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELES 68 (328)
T ss_pred cccCcEEeeccccCCC---------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHh
Confidence 5899999999988762 345677999999999999999 44 77 889999999 99999999874
No 43
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.21 E-value=2.8e-11 Score=81.16 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=40.8
Q ss_pred eeEeeCChHHHHHHHHHh-cCCccEEEEeecCChhHHHHHHHhhC
Q 035160 28 ANYVLGGVARNVAECMSK-LGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~r-LG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
....+||+++|+++++++ ||.++.++++||+|.+|+++++.|++
T Consensus 81 ~~~~~GGsa~N~a~~la~~LG~~~~~ig~VG~D~~G~~~~~~L~~ 125 (367)
T PLN02379 81 IKTMAGGSVANTIRGLSAGFGVSTGIIGACGDDEQGKLFVSNMGF 125 (367)
T ss_pred ceecCCCHHHHHHHHHHHhcCCCEEEEEEeCCChhHHHHHHHHHH
Confidence 567799999999999985 99999999999999999999999864
No 44
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.16 E-value=9.6e-11 Score=78.02 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=44.0
Q ss_pred CEEeceeceeEeecCCCCCCCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCCh
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDM 60 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~ 60 (71)
+|||++++|+++++ ++. ....+||+++|+|++++|||.++.|++++|+|.
T Consensus 15 lvvG~~~~D~i~~~------g~~----~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~ 64 (335)
T PLN02630 15 LIVGNYCHDVLIQN------GSV----TAESLGGAASFISNVLDALSVECELVSKVGPDF 64 (335)
T ss_pred EEEeeeeeeEEEeC------CcE----EEEecCcHHHHHHHHHHHcCCceEEEEEecCCc
Confidence 58999999999885 221 467899999999999999999999999999995
No 45
>PLN02548 adenosine kinase
Probab=99.12 E-value=5e-11 Score=78.16 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=40.4
Q ss_pred ceeeEeeCChHHHHHH---HHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 26 GKANYVLGGVARNVAE---CMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 26 ~~~~~~~GG~a~N~A~---~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
......+||+++|+|. .+++||.++.|+|.||+|.+|+++++.|++
T Consensus 45 ~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~ 93 (332)
T PLN02548 45 YNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATA 93 (332)
T ss_pred CCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHH
Confidence 3778899999999754 456779999999999999999999999874
No 46
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.06 E-value=5e-10 Score=76.34 Aligned_cols=69 Identities=28% Similarity=0.470 Sum_probs=56.4
Q ss_pred CEEeceeceeEeecCC-CCCCCccee----ceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 1 MIIGGMVLDIHATPSI-PANPRTTTL----GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~-~~~~~~~~~----~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
+|+|++++|.+.+.+. ...|+...| .+....+||.+ |+|.+++.||.++.++|.+|+|..|+.+++.|+
T Consensus 14 LVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGAa-NVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~ 87 (467)
T COG2870 14 LVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGAA-NVAKNIASLGANAYLVGVVGKDEAGKALIELLK 87 (467)
T ss_pred EEEcceeeeeeccccccccCCCCCCceEEecccccccccHH-HHHHHHHHcCCCEEEEEeeccchhHHHHHHHHH
Confidence 5899999999998753 233333222 26778889976 999999999999999999999999999998875
No 47
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.05 E-value=3.5e-10 Score=78.26 Aligned_cols=68 Identities=29% Similarity=0.444 Sum_probs=61.0
Q ss_pred CEEeceeceeEeecCCCCC-CCcceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHH
Q 035160 1 MIIGGMVLDIHATPSIPAN-PRTTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~-~~~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
+|+|+..+|+.++.+.... .+.++.....+..||.+.|.|.+++|||.++.||++||+|.-+++.+..
T Consensus 344 v~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~~ 412 (614)
T KOG3009|consen 344 VSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQN 412 (614)
T ss_pred eeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhhh
Confidence 5899999999999998544 5788888888999999999999999999999999999999888877653
No 48
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=5.7e-08 Score=63.05 Aligned_cols=71 Identities=21% Similarity=0.177 Sum_probs=62.8
Q ss_pred CEEeceeceeEeecCCCCCCCccee-ceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 1 MIIGGMVLDIHATPSIPANPRTTTL-GKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~~~~~~~~~~-~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
+|+|...+|++-.++.+|-+++... ..-..+-||.++|+.-.+++||.++.|.+.+-....-+++++.|++
T Consensus 8 LcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~ 79 (308)
T KOG2947|consen 8 LCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRR 79 (308)
T ss_pred EEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHh
Confidence 5899999999999998777665544 3667788999999999999999999999999999999999999875
No 49
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=98.21 E-value=2.1e-06 Score=57.14 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=53.2
Q ss_pred eeceeEeecCCCCCCCcceec-eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 6 MVLDIHATPSIPANPRTTTLG-KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 6 ~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
..+|++++.+. ...++.+.. +....+||++.|+|..|++||.++.-.+.+|.+. |+++.+.|+
T Consensus 9 PaiD~~~~l~~-l~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~t-g~~~~~~l~ 72 (310)
T COG1105 9 PALDYTVFLDE-LELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGFT-GEFFVALLK 72 (310)
T ss_pred hhHhheeeccc-ccccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCcc-HHHHHHHHH
Confidence 46788888854 455666654 8999999999999999999999999999999985 888888776
No 50
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=1.2e-05 Score=53.95 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=54.0
Q ss_pred EEeceeceeEeecCCC------CCCCc--------------c-eeceeeEeeCChHHHHHHHHHhcCC---ccEEEEeec
Q 035160 2 IIGGMVLDIHATPSIP------ANPRT--------------T-TLGKANYVLGGVARNVAECMSKLGA---KPYMISALG 57 (71)
Q Consensus 2 ~iG~~~~D~~~~~~~~------~~~~~--------------~-~~~~~~~~~GG~a~N~A~~l~rLG~---~~~lis~vG 57 (71)
.+|...+|+...++.. ...+. - ........+||++-|.+..+++++- ++.|+++||
T Consensus 11 G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~GsvG 90 (343)
T KOG2854|consen 11 GLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFGSVG 90 (343)
T ss_pred ccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEeecc
Confidence 3678888988877631 11111 1 1125677899999999999999988 899999999
Q ss_pred CChhHHHHHHHhhC
Q 035160 58 LDMVGDFAFYFVVS 71 (71)
Q Consensus 58 ~D~~G~~i~~~l~~ 71 (71)
+|.+|+++++.+++
T Consensus 91 ~Dk~ge~l~~~~~~ 104 (343)
T KOG2854|consen 91 KDKFGELLKSKARA 104 (343)
T ss_pred CchHHHHHHHHHHh
Confidence 99999999998764
No 51
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=79.58 E-value=2.2 Score=27.48 Aligned_cols=18 Identities=17% Similarity=0.446 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.+|
T Consensus 18 ~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 18 TQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 489999999999999887
No 52
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=79.22 E-value=3.7 Score=24.63 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.8
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEEee
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
-++...||++.|+|..+...+-++.+++-+
T Consensus 64 ~ltDl~GGSP~N~A~~l~~~~~~~~viaGv 93 (143)
T COG2893 64 FLTDLFGGSPFNVASRLAMEGPRVEVIAGV 93 (143)
T ss_pred EEEecCCCCHhHHHHHHHhhCCCceEEecC
Confidence 356678999999999999998888777643
No 53
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=75.80 E-value=3 Score=26.81 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.++
T Consensus 18 a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 18 TQNLTAALSTMGNKILLV 35 (273)
T ss_pred HHHHHHHHHhhCCCeEEE
Confidence 489999999999999887
No 54
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=74.37 E-value=3.2 Score=26.76 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.++
T Consensus 18 a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 18 VCNIAAALAESGKKVLVV 35 (279)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 489999999999998777
No 55
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=71.83 E-value=4 Score=26.15 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.++
T Consensus 17 a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 17 TQNIAAALAEMGKKVMIV 34 (275)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 389999999999988776
No 56
>PHA02518 ParA-like protein; Provisional
Probab=71.65 E-value=4.1 Score=24.69 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
+.|.|..+++.|.+|.++-.
T Consensus 18 a~~la~~la~~g~~vlliD~ 37 (211)
T PHA02518 18 ATNLASWLHADGHKVLLVDL 37 (211)
T ss_pred HHHHHHHHHhCCCeEEEEeC
Confidence 48999999999999887743
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=70.94 E-value=4.1 Score=26.95 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChhHHHH
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMVGDFA 65 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~G~~i 65 (71)
+.|.|++|++.|.+|.++ --|..|..+
T Consensus 18 a~~lA~aLa~~G~kVg~l---D~Di~q~S~ 44 (261)
T PF09140_consen 18 AVNLAVALARMGKKVGLL---DLDIRQPSL 44 (261)
T ss_dssp HHHHHHHHHCTT--EEEE---E--TTT-HH
T ss_pred HHHHHHHHHHCCCeEEEE---ecCCCCCCH
Confidence 489999999999998665 335544443
No 58
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=70.90 E-value=4.2 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.671 Sum_probs=18.3
Q ss_pred eCChH-----HHHHHHHHhcCCccEEE
Q 035160 32 LGGVA-----RNVAECMSKLGAKPYMI 53 (71)
Q Consensus 32 ~GG~a-----~N~A~~l~rLG~~~~li 53 (71)
=||++ .|.|.+|++.|.+|.++
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 46654 89999999999988876
No 59
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=70.70 E-value=5.4 Score=25.44 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.++
T Consensus 17 ~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 17 SSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 589999999999998776
No 60
>PRK10037 cell division protein; Provisional
Probab=69.61 E-value=5.1 Score=25.42 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|..|++.|.+|.+|
T Consensus 19 a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 19 TAALAWSLQMLGENVLVI 36 (250)
T ss_pred HHHHHHHHHhcCCcEEEE
Confidence 489999999999998887
No 61
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=69.33 E-value=10 Score=25.34 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.6
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
+++-+-=|.. +..--|.|.+.+.+|.-.+|-|..|+.+...+|
T Consensus 12 t~~~~~~g~~-~~~~~~~~~~~~a~f~~~~gpd~~g~~~~r~~~ 54 (296)
T PRK15394 12 TFRGTREGVP-RLLEILSKHGIQASFFFSVGPDNMGRHLWRLLK 54 (296)
T ss_pred cccccccCHH-HHHHHHHHcCCCEEEEeccCCCchhHHHHHHhh
Confidence 3333444665 788889999999999999999999999887765
No 62
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=69.03 E-value=5.2 Score=26.07 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=16.4
Q ss_pred HHHHHHHHhcCCccEEEEe
Q 035160 37 RNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~ 55 (71)
+|.|.+|+|+|.+|..|=.
T Consensus 20 AnLA~aL~~~G~~VlaID~ 38 (243)
T PF06564_consen 20 ANLAWALARLGESVLAIDL 38 (243)
T ss_pred HHHHHHHHHCCCcEEEEeC
Confidence 8999999999999877643
No 63
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=68.08 E-value=7.6 Score=25.89 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCccEEEEeecC
Q 035160 36 ARNVAECMSKLGAKPYMISALGL 58 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~ 58 (71)
+.|.+.++++.|.+|..+++=-+
T Consensus 17 ~~Nlsaala~~G~kVl~iGCDPK 39 (273)
T PF00142_consen 17 ASNLSAALAEMGKKVLQIGCDPK 39 (273)
T ss_dssp HHHHHHHHHHTT--EEEEEESSS
T ss_pred hhHHHHHHHhccceeeEecccCC
Confidence 58999999999999999988554
No 64
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=64.77 E-value=26 Score=23.46 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=36.5
Q ss_pred ceeeEeeCChHHHHHHH---HHhcCCccEEEEeecCChhHHHHHHH
Q 035160 26 GKANYVLGGVARNVAEC---MSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 26 ~~~~~~~GG~a~N~A~~---l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
++.....||...-+... +.++|.++..++..|....-+.+.+.
T Consensus 131 GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~ 176 (286)
T COG2084 131 GTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNI 176 (286)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHH
Confidence 48999999999999987 99999999999999887766655544
No 65
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=61.53 E-value=9.2 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.2
Q ss_pred eEeeCChHHHHHHHHHhcCCc
Q 035160 29 NYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~ 49 (71)
-.-.||.+.++|..|+|.|..
T Consensus 26 IvG~GglGs~ia~~La~~Gvg 46 (200)
T TIGR02354 26 ICGLGGLGSNVAINLARAGIG 46 (200)
T ss_pred EECcCHHHHHHHHHHHHcCCC
Confidence 445799999999999999984
No 66
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=60.36 E-value=12 Score=22.22 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
+.|.|..+++.|.+|.++-
T Consensus 17 a~~LA~~la~~g~~vllvD 35 (169)
T cd02037 17 AVNLALALAKLGYKVGLLD 35 (169)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 4899999999999999874
No 67
>PRK13236 nitrogenase reductase; Reviewed
Probab=59.85 E-value=11 Score=24.76 Aligned_cols=18 Identities=17% Similarity=0.505 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.++
T Consensus 23 a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 23 SQNTLAAMAEMGQRILIV 40 (296)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 489999999999999887
No 68
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=59.78 E-value=11 Score=23.98 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.+|.++
T Consensus 17 a~nLA~~la~~G~rvlli 34 (267)
T cd02032 17 SSNLSVALAKRGKKVLQI 34 (267)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 489999999999998776
No 69
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=59.12 E-value=18 Score=21.81 Aligned_cols=38 Identities=13% Similarity=-0.051 Sum_probs=26.6
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHH
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
.-||.+.-.|..|++-|.+|.++..--.+...+..+..
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~ 73 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQ 73 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHH
Confidence 35788899999999999999885554444444444433
No 70
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=58.30 E-value=12 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.++++.|.+|.+|
T Consensus 21 ~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 21 SQNTLAALVEMGQKILIV 38 (295)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 489999999999999888
No 71
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=57.85 E-value=22 Score=20.22 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=19.3
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis 54 (71)
-+....||++.|+|..+.+-.-++.+++
T Consensus 63 vltDl~GGSp~n~a~~~~~~~~~~~vIs 90 (116)
T TIGR00824 63 FLVDIFGGSPYNAAARIIVDKPHMDVIA 90 (116)
T ss_pred EEEeCCCCCHHHHHHHHHhhcCCEEEEE
Confidence 3567789999999986643334555555
No 72
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=57.81 E-value=11 Score=24.19 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=17.8
Q ss_pred eCCh-----HHHHHHHHHh-cCCccEEE
Q 035160 32 LGGV-----ARNVAECMSK-LGAKPYMI 53 (71)
Q Consensus 32 ~GG~-----a~N~A~~l~r-LG~~~~li 53 (71)
=||+ +.|.|.+|++ .|.+|.++
T Consensus 10 KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 10 KGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 4664 4899999997 59998877
No 73
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=57.49 E-value=13 Score=23.74 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.++++.|.+|.++
T Consensus 19 ~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 19 SSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 489999999999998877
No 74
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=57.06 E-value=14 Score=22.79 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.++++.|.+|.++
T Consensus 17 ~~nLA~~la~~G~rvLli 34 (212)
T cd02117 17 SQNLSAALAEMGKKVLQV 34 (212)
T ss_pred HHHHHHHHHHCCCcEEEE
Confidence 489999999999998776
No 75
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.83 E-value=13 Score=24.20 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=20.9
Q ss_pred eeeEeeCCh-----HHHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGV-----ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~l~rLG~~~~lis 54 (71)
......||. +.|.|.+++++|.+|.++=
T Consensus 61 ~V~S~kgGvGKStva~nLA~alA~~G~rVlliD 93 (265)
T COG0489 61 AVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLD 93 (265)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEe
Confidence 344445554 3899999999999988763
No 76
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=56.82 E-value=13 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
+.|.|.+|+++|.+|.+|-
T Consensus 17 a~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 17 SCNISIALARRGKKVLQIG 35 (290)
T ss_pred HHHHHHHHHHCCCeEEEEe
Confidence 5899999999999987763
No 77
>PRK11670 antiporter inner membrane protein; Provisional
Probab=56.75 E-value=13 Score=25.41 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=21.5
Q ss_pred eeeEeeCChH-----HHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGVA-----RNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~a-----~N~A~~l~rLG~~~~lis 54 (71)
.+...=||.+ .|.|.+|++.|.+|.++-
T Consensus 111 aV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID 143 (369)
T PRK11670 111 AVSSGKGGVGKSSTAVNLALALAAEGAKVGILD 143 (369)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4445557764 999999999999987763
No 78
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=56.39 E-value=17 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=27.6
Q ss_pred eeEeeCChHHHHHHHHHhcCC-ccEEEEeecCC
Q 035160 28 ANYVLGGVARNVAECMSKLGA-KPYMISALGLD 59 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~-~~~lis~vG~D 59 (71)
.....||.|.-+|..++++|. +|.+.+++...
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k 133 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK 133 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcH
Confidence 458899999999999999999 88888886544
No 79
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=53.26 E-value=16 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.7
Q ss_pred eeeEeeCChH-----HHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGVA-----RNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~a-----~N~A~~l~rLG~~~~lis 54 (71)
.+.-.=||++ .|.|..+++.|.+|.+|=
T Consensus 110 ai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 110 GVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred EEECCCCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 5555568865 899999999999998885
No 80
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=53.12 E-value=17 Score=21.22 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
+.|.|..+++.|.+|.++-
T Consensus 17 a~~la~~l~~~g~~vllvD 35 (179)
T cd02036 17 TANLGTALAQLGYKVVLID 35 (179)
T ss_pred HHHHHHHHHhCCCeEEEEe
Confidence 5899999999999999883
No 81
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=53.10 E-value=15 Score=24.46 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCccEEEEeecCC
Q 035160 36 ARNVAECMSKLGAKPYMISALGLD 59 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D 59 (71)
..|++.+|+.+|.++-.+++=-+-
T Consensus 18 s~N~aAAla~~GkkVl~vGCDPKa 41 (278)
T COG1348 18 SQNLAAALAELGKKVLIVGCDPKA 41 (278)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCCc
Confidence 479999999999999998875543
No 82
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=53.07 E-value=28 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=21.8
Q ss_pred eeeEeeCCh-----HHHHHHHHHhcCCccEEE
Q 035160 27 KANYVLGGV-----ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~l~rLG~~~~li 53 (71)
.+.-.=||+ +.|.|..|++.|.+|.+|
T Consensus 125 av~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 125 AVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 555556885 489999999999998877
No 83
>PRK10818 cell division inhibitor MinD; Provisional
Probab=52.14 E-value=16 Score=23.21 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=18.2
Q ss_pred eCChH-----HHHHHHHHhcCCccEEEE
Q 035160 32 LGGVA-----RNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 32 ~GG~a-----~N~A~~l~rLG~~~~lis 54 (71)
-||++ .|.|.++++.|.+|.++-
T Consensus 11 KGGvGKTt~a~nlA~~la~~g~~vllvD 38 (270)
T PRK10818 11 KGGVGKTTSSAAIATGLAQKGKKTVVID 38 (270)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46654 899999999998887764
No 84
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=52.02 E-value=37 Score=18.43 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.6
Q ss_pred HHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 40 AECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 40 A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
+....++|.++.|.++=.+|.-.+.+++.|.
T Consensus 27 ~ai~~~FG~~arFhTCSae~m~a~eLv~FL~ 57 (78)
T PF10678_consen 27 AAIIEKFGEDARFHTCSAEGMTADELVDFLE 57 (78)
T ss_pred HHHHHHhCCCceEEecCCCCCCHHHHHHHHH
Confidence 3346789999999999999999999988775
No 85
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=52.01 E-value=17 Score=23.16 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
+.|.|..+++.|.+|.++-.
T Consensus 19 a~nLA~~la~~G~~VlliD~ 38 (231)
T PRK13849 19 LMGLCAALASDGKRVALFEA 38 (231)
T ss_pred HHHHHHHHHhCCCcEEEEeC
Confidence 48999999999999877643
No 86
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=51.92 E-value=18 Score=20.88 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=27.1
Q ss_pred eeEeeCChHHHHHHHHHhcCCc-cEEEEeecCChhHHHHHHHh
Q 035160 28 ANYVLGGVARNVAECMSKLGAK-PYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~-~~lis~vG~D~~G~~i~~~l 69 (71)
.-.-.||.+.-++.+|..+|.+ +.++.+ +....+.+.+.+
T Consensus 16 lviGaGg~ar~v~~~L~~~g~~~i~i~nR--t~~ra~~l~~~~ 56 (135)
T PF01488_consen 16 LVIGAGGAARAVAAALAALGAKEITIVNR--TPERAEALAEEF 56 (135)
T ss_dssp EEESSSHHHHHHHHHHHHTTSSEEEEEES--SHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHHcCCCEEEEEEC--CHHHHHHHHHHc
Confidence 3455799999999999999988 666664 223344444443
No 87
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=50.00 E-value=19 Score=22.99 Aligned_cols=20 Identities=45% Similarity=0.600 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
+.|.|.++++.|.+|.+|-.
T Consensus 121 a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 121 AANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred HHHHHHHHHhcCCeEEEEeC
Confidence 48999999999999988844
No 88
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=49.26 E-value=38 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.9
Q ss_pred eeeEeeCChH-----HHHHHHHHhcCCccEEE
Q 035160 27 KANYVLGGVA-----RNVAECMSKLGAKPYMI 53 (71)
Q Consensus 27 ~~~~~~GG~a-----~N~A~~l~rLG~~~~li 53 (71)
.+...=||++ .|.|.+|++.|.+|.+|
T Consensus 108 ~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 108 AVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred EEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5555668864 89999999999998877
No 89
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=49.19 E-value=16 Score=25.96 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.3
Q ss_pred EeeCChHHHHHHHHHhcCCcc--EEEEeecC
Q 035160 30 YVLGGVARNVAECMSKLGAKP--YMISALGL 58 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~--~lis~vG~ 58 (71)
...||.|.-+|..++++|.++ .+...++.
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~ 116 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK 116 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH
Confidence 479999999999999999984 45555553
No 90
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=49.06 E-value=23 Score=19.60 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCccEEEEeecCC
Q 035160 37 RNVAECMSKLGAKPYMISALGLD 59 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~vG~D 59 (71)
.+.+..|++.|+++.+++.-.++
T Consensus 8 ~~l~~~L~~~G~~V~v~~~~~~~ 30 (160)
T PF13579_consen 8 RELARALAARGHEVTVVTPQPDP 30 (160)
T ss_dssp HHHHHHHHHTT-EEEEEEE---G
T ss_pred HHHHHHHHHCCCEEEEEecCCCC
Confidence 57788999999999999854443
No 91
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=48.97 E-value=18 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=24.9
Q ss_pred eEeeCChHHHHHHHHHhcCCc--cEEEEeecCC
Q 035160 29 NYVLGGVARNVAECMSKLGAK--PYMISALGLD 59 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~--~~lis~vG~D 59 (71)
....||.|.-+|..++++|.+ +.++..++..
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~lsk~ 130 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLSKK 130 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCCHH
Confidence 357999999999999999998 4666656543
No 92
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=48.93 E-value=21 Score=22.13 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|..+++.|.+|.++
T Consensus 18 a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 18 TANLGVALAKLGKKVLAL 35 (251)
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 489999999999988777
No 93
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.77 E-value=22 Score=22.04 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
+.|.|..+++.|.+|.++-.
T Consensus 19 a~nla~~la~~g~~VlliD~ 38 (246)
T TIGR03371 19 TANLASALKLLGEPVLAIDL 38 (246)
T ss_pred HHHHHHHHHhCCCcEEEEeC
Confidence 48999999999999887754
No 94
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=47.93 E-value=45 Score=18.08 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=27.6
Q ss_pred HHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 39 VAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 39 ~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
.+.-..+.|.++.|.++=.+|.-.+.+++.|.
T Consensus 24 ~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~ 55 (77)
T TIGR03853 24 KAAIEQKFGEDARFHTCSAEGMTADELLQFLL 55 (77)
T ss_pred HHHHHHHhCCCceEeecccccCCHHHHHHHHH
Confidence 44557799999999999999999999988875
No 95
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=47.07 E-value=21 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=22.8
Q ss_pred eeeEeeCChH-----HHHHHHHHhcCCccEEEEe
Q 035160 27 KANYVLGGVA-----RNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 27 ~~~~~~GG~a-----~N~A~~l~rLG~~~~lis~ 55 (71)
.+.-.=||++ .|.|..|++.|.+|.+|=.
T Consensus 110 av~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl 143 (387)
T PHA02519 110 AVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEG 143 (387)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4555558865 8999999999999988753
No 96
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=47.04 E-value=29 Score=20.69 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=20.1
Q ss_pred eEeeCChHHHHHHHHH-hcCCcc-EEEE
Q 035160 29 NYVLGGVARNVAECMS-KLGAKP-YMIS 54 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~-rLG~~~-~lis 54 (71)
....||+.+|.|+.++ .||.+. .|+|
T Consensus 135 ~~~~g~sV~~~a~~lA~~lG~~~I~L~G 162 (170)
T PF01973_consen 135 ILYSGGSVANTALQLAYYLGFKPIYLIG 162 (170)
T ss_pred cCCCCccHHHHHHHHHHHHCCCcEEEEe
Confidence 5788999999999888 678753 4443
No 97
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=46.96 E-value=62 Score=21.37 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCccEEEEeecCCh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDM 60 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~ 60 (71)
++-.|--|..+|.+++.+..||||.
T Consensus 23 a~~la~~L~~~G~~v~~~~~VgD~~ 47 (255)
T COG1058 23 AAFLADELTELGVDLARITTVGDNP 47 (255)
T ss_pred HHHHHHHHHhcCceEEEEEecCCCH
Confidence 4556778888999999999999984
No 98
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=46.56 E-value=20 Score=23.61 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.8
Q ss_pred eeEeeCChHHHHHHHHHhcCC
Q 035160 28 ANYVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~ 48 (71)
.-.-.||.+..+|.+|+|.|.
T Consensus 34 lVvG~GGVGs~vae~Lar~GV 54 (268)
T PRK15116 34 CVVGIGGVGSWAAEALARTGI 54 (268)
T ss_pred EEECcCHHHHHHHHHHHHcCC
Confidence 344679999999999999994
No 99
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=46.06 E-value=34 Score=22.48 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=21.2
Q ss_pred eeEeeCChHHHHHHHHHhcCC-ccEEEEe
Q 035160 28 ANYVLGGVARNVAECMSKLGA-KPYMISA 55 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~-~~~lis~ 55 (71)
.-.-.||.+.-++.+|+++|. ++.++.+
T Consensus 131 lIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 131 VQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 345679999999999999997 4555543
No 100
>CHL00175 minD septum-site determining protein; Validated
Probab=45.98 E-value=24 Score=22.65 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=20.9
Q ss_pred eeeEeeCCh-----HHHHHHHHHhcCCccEEE
Q 035160 27 KANYVLGGV-----ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 27 ~~~~~~GG~-----a~N~A~~l~rLG~~~~li 53 (71)
.+.-.-||+ ++|.|.++++.|.+|.++
T Consensus 19 ~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 19 VITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 344445776 489999999999998877
No 101
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=44.37 E-value=61 Score=18.93 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
+.-.+-.+.++|.++.....++||..
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~ 54 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPE 54 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHH
Confidence 45667789999999999999999863
No 102
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=43.98 E-value=48 Score=18.72 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=21.5
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEEee
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
-+....||+..|++..+.....++.+++-+
T Consensus 62 il~Dl~GGSp~n~~~~~~~~~~~~~visG~ 91 (122)
T cd00006 62 ILTDLFGGSPNNAAARLSMEHPPVEVIAGV 91 (122)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCCEEEEEcc
Confidence 356667999999998887654566666543
No 103
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=43.65 E-value=30 Score=21.04 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
+.|.|.++++.|.+|.+|-
T Consensus 35 a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 35 SANIAVAFAQAGYKTLLID 53 (204)
T ss_pred HHHHHHHHHhCCCeEEEEe
Confidence 5899999999999988764
No 104
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=43.46 E-value=25 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.043 Sum_probs=21.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeec
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG 57 (71)
.|..+...|+.+++.|.+|.++.+-.
T Consensus 7 ~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 7 GGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred CCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 46678999999999999999987744
No 105
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=43.35 E-value=28 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=24.4
Q ss_pred eEeeCChHHHHHHHHHhcCCccEEEEee
Q 035160 29 NYVLGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
..-.|+.+.+.|+.++..|.+|.++++.
T Consensus 11 VIG~G~AGl~AAi~aa~~g~~V~l~~K~ 38 (562)
T COG1053 11 VIGGGGAGLRAAIEAAEAGLKVALLSKA 38 (562)
T ss_pred EECCcHHHHHHHHHHHhcCCcEEEEEcc
Confidence 3456889999999999999999999875
No 106
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=43.33 E-value=51 Score=21.64 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.4
Q ss_pred eeEeeCChHHHHHHHHHhcCCc-cEEEEe
Q 035160 28 ANYVLGGVARNVAECMSKLGAK-PYMISA 55 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~-~~lis~ 55 (71)
.-.-.||.+.-++.+|.++|.. +.++.+
T Consensus 126 lilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 126 ALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred EEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 3455799999999999999985 666665
No 107
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=42.86 E-value=29 Score=22.91 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
+.|.|.++++.|.+|.++-.
T Consensus 17 a~nLA~~La~~g~rVLlID~ 36 (296)
T TIGR02016 17 TTNLSHMMAEMGKRVLQLGC 36 (296)
T ss_pred HHHHHHHHHHCCCeEEEEEe
Confidence 48999999999999877654
No 108
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=42.64 E-value=44 Score=17.77 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHhcCCccEEEEeecCChhHHHH
Q 035160 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDFA 65 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i 65 (71)
+|.....+..+...|.++-+++.+|...+..+-
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~a~~~l~ 79 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGPAAAKLE 79 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCccHHHHHH
Confidence 356678888999999999999999988766543
No 109
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=42.11 E-value=34 Score=21.96 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
++|.|..+++.|.++.+++.
T Consensus 17 a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 17 SAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred HHHHHHHHHHCCCCceEEeC
Confidence 58999999999999999874
No 110
>PRK05854 short chain dehydrogenase; Provisional
Probab=42.09 E-value=54 Score=21.40 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=24.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHh
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l 69 (71)
.+|-+..+|..|++.|.++.++++ +....+..++++
T Consensus 23 s~GIG~~~a~~La~~G~~Vil~~R--~~~~~~~~~~~l 58 (313)
T PRK05854 23 SDGLGLGLARRLAAAGAEVILPVR--NRAKGEAAVAAI 58 (313)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHH
Confidence 467778899999999998887764 233344444443
No 111
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=42.06 E-value=33 Score=20.82 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.0
Q ss_pred eeCChHHHHHHHHHhcCCc
Q 035160 31 VLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~ 49 (71)
-.||.+..+|.+|+|.|..
T Consensus 6 G~GglGs~ia~~La~~Gvg 24 (174)
T cd01487 6 GAGGLGSNIAVLLARSGVG 24 (174)
T ss_pred CcCHHHHHHHHHHHHcCCC
Confidence 4699999999999999985
No 112
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=41.74 E-value=71 Score=18.82 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCccEEEEeecCChh
Q 035160 37 RNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
...+-.+.++|.++.....+.||..
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~ 47 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKD 47 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHH
Confidence 3456678999999999999999863
No 113
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=41.67 E-value=34 Score=20.17 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
++|.|..+++.|.+|.++-.
T Consensus 16 a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 16 AANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp HHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHhcccccccccccccc
Confidence 48999999999999999876
No 114
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=41.40 E-value=32 Score=21.40 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|..+++.|.+|.++
T Consensus 19 a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 19 TANLGTALARLGKKVVLI 36 (261)
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 489999999999998877
No 115
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=41.09 E-value=31 Score=22.91 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
.+|.+.+|+++|.++.++-
T Consensus 20 tAnig~aLA~~GkKv~liD 38 (272)
T COG2894 20 TANIGTALAQLGKKVVLID 38 (272)
T ss_pred hHHHHHHHHHcCCeEEEEe
Confidence 3899999999999998873
No 116
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=40.65 E-value=43 Score=23.99 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.4
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEE
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYM 52 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~l 52 (71)
......||.|.-+|..++++|.++.+
T Consensus 85 ~~~~rmGGnAgimAn~la~lg~~~Vi 110 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSELGASRVV 110 (453)
T ss_pred CceEEeCChHHHHHHHHHhcCCceEE
Confidence 34688999999999999999999644
No 117
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=40.57 E-value=54 Score=16.81 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCccEEEEeec
Q 035160 36 ARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG 57 (71)
+.=.|..++++|.++.++..-.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHhCcEEEEEeccc
Confidence 4567888999999999987654
No 118
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=40.54 E-value=66 Score=21.59 Aligned_cols=39 Identities=10% Similarity=-0.061 Sum_probs=26.1
Q ss_pred eeCChHH-HHHHHHHhc-CCccEEEEeecCChhHHH-HHHHh
Q 035160 31 VLGGVAR-NVAECMSKL-GAKPYMISALGLDMVGDF-AFYFV 69 (71)
Q Consensus 31 ~~GG~a~-N~A~~l~rL-G~~~~lis~vG~D~~G~~-i~~~l 69 (71)
..||.+. ..+.+|+++ ..+...|-.++||....- +++++
T Consensus 4 l~GGtG~~~ll~gL~~~~~~~lt~IV~~~DdggssG~LR~~~ 45 (300)
T PF01933_consen 4 LGGGTGLSKLLRGLKRVPPHDLTAIVNTADDGGSSGRLRREL 45 (300)
T ss_dssp EE-SCHHHHHHHHHTTS-SEEEEEEE--CT-SHHHHHHHHHC
T ss_pred EeCcccHHHHHHHHHHhCCCCeEEEEECccCCccchhhHhhc
Confidence 4578774 566799999 999999999999976654 55543
No 119
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=40.53 E-value=48 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=19.8
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis 54 (71)
-+....||+..|+|..+.+-..++.+++
T Consensus 64 ILtDl~GGSP~N~a~~~~~~~~~v~vIt 91 (322)
T PRK15088 64 FLVDTWGGSPFNAASRIVVDKENYEVIT 91 (322)
T ss_pred EEEeCCCCCHHHHHHHHHhccCCeEEEE
Confidence 3667789999999887665344555554
No 120
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=40.31 E-value=85 Score=19.05 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
+.-.+-.+.++|.++..+..++||..
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~ 46 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDED 46 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHH
Confidence 34556678899999999999999864
No 121
>PRK03670 competence damage-inducible protein A; Provisional
Probab=40.06 E-value=1e+02 Score=20.17 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
+.-.+-.|..+|.++..+..|+||..
T Consensus 22 ~~~la~~L~~~G~~v~~~~iV~Dd~~ 47 (252)
T PRK03670 22 SAFIAQKLTEKGYWVRRITTVGDDVE 47 (252)
T ss_pred HHHHHHHHHHCCCEEEEEEEcCCCHH
Confidence 34556678899999999999999864
No 122
>PRK10262 thioredoxin reductase; Provisional
Probab=40.02 E-value=68 Score=20.87 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.0
Q ss_pred eeeEeeCCh-HHHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGV-ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~-a~N~A~~l~rLG~~~~lis 54 (71)
+.-..-||. +.+.|..++|.|+++.++-
T Consensus 8 ~vvIIGgGpaGl~aA~~l~~~g~~~~~ie 36 (321)
T PRK10262 8 KLLILGSGPAGYTAAVYAARANLQPVLIT 36 (321)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCeEEEE
Confidence 444555664 4778888999999887773
No 123
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=39.72 E-value=39 Score=18.99 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=21.2
Q ss_pred eCChH---HHHHHHHHhcCCccEEEEeecCCh
Q 035160 32 LGGVA---RNVAECMSKLGAKPYMISALGLDM 60 (71)
Q Consensus 32 ~GG~a---~N~A~~l~rLG~~~~lis~vG~D~ 60 (71)
.||.. .|.+..+++.|+++.+++.-.+|.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~ 42 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDP 42 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 45554 788899999999999997766654
No 124
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=39.18 E-value=34 Score=19.64 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.9
Q ss_pred eeCChHHHHHHHHHhcCCc
Q 035160 31 VLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~ 49 (71)
-.||.+..+|.+|.+.|..
T Consensus 6 G~GglGs~ia~~L~~~Gv~ 24 (143)
T cd01483 6 GLGGLGSEIALNLARSGVG 24 (143)
T ss_pred CCCHHHHHHHHHHHHCCCC
Confidence 3689999999999999983
No 125
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=38.69 E-value=55 Score=21.74 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=34.9
Q ss_pred eeEeeCChHHHHHHHHHhcCCccEEEEeec--CChhHHHHHHHh
Q 035160 28 ANYVLGGVARNVAECMSKLGAKPYMISALG--LDMVGDFAFYFV 69 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~~~lis~vG--~D~~G~~i~~~l 69 (71)
...++=|.+-+....|++.|.+|....++| .|.+.-.++...
T Consensus 254 efq~L~Gm~d~l~~~L~~~g~~v~~YvP~G~~~~~~~YL~RRl~ 297 (313)
T PF01619_consen 254 EFQQLYGMADDLSRALAQAGYRVRKYVPYGPVEEWMPYLVRRLA 297 (313)
T ss_dssp EEEEETTSSHHHHHHHHHHTSEEEEEEEESEGGGHHHHHHHHHH
T ss_pred EeehhccCCHHHHHHHHhCCCCEEEEEecCChhHHHHHHHHHHH
Confidence 345566788899999999999999999999 898887776543
No 126
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=38.63 E-value=45 Score=22.65 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.1
Q ss_pred eCCh-----HHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGV-----ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~-----a~N~A~~l~rLG~~~~lis~ 55 (71)
-||. ++|.|.++++.|.+|.++.+
T Consensus 39 kgG~GKSt~a~nLa~~la~~g~rVllid~ 67 (329)
T cd02033 39 KGGIGKSFTLANLSYMMAQQGKRVLLIGC 67 (329)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 5665 48999999999999998854
No 127
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=38.40 E-value=22 Score=20.33 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.7
Q ss_pred EeeCChHHHHHHHHHhcCC
Q 035160 30 YVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~ 48 (71)
.-.||.+..+|.+|+|.|.
T Consensus 8 iG~G~vGs~va~~L~~~Gv 26 (135)
T PF00899_consen 8 IGAGGVGSEVAKNLARSGV 26 (135)
T ss_dssp ESTSHHHHHHHHHHHHHTT
T ss_pred ECcCHHHHHHHHHHHHhCC
Confidence 3468899999999999998
No 128
>PRK03673 hypothetical protein; Provisional
Probab=38.21 E-value=76 Score=22.19 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCccEEEEeecCCh
Q 035160 35 VARNVAECMSKLGAKPYMISALGLDM 60 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~vG~D~ 60 (71)
.+.-.+..|..+|.++..++.++||.
T Consensus 22 N~~~la~~L~~~G~~v~~~~~v~D~~ 47 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRNTVGDNL 47 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCH
Confidence 34556778899999999999999985
No 129
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.95 E-value=36 Score=21.08 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=18.0
Q ss_pred eeEeeCChHHHHHHHHHhcCC
Q 035160 28 ANYVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~ 48 (71)
.-.-.||.+..+|.+|++.|.
T Consensus 25 lviG~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 25 LIIGAGGLGSPAALYLAGAGV 45 (202)
T ss_pred EEECCCHHHHHHHHHHHHcCC
Confidence 345679999999999999997
No 130
>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=36.85 E-value=78 Score=18.57 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=28.5
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHh
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l 69 (71)
..|-.+-|...++..+|..+.+++...+...-+.+++.|
T Consensus 91 ~~g~a~~nl~Laa~~~Glgt~~~~~~~~~~~~~~~~~~l 129 (166)
T cd02150 91 DCAAAVQNILLAAHALGLGAVWLGVYPFEERVEKVRELL 129 (166)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEecccccchHHHHHHHh
Confidence 456667799999999999999998766433344555544
No 131
>KOG4764 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.22 E-value=26 Score=18.60 Aligned_cols=14 Identities=7% Similarity=-0.273 Sum_probs=11.1
Q ss_pred CChhHHHHHHHhhC
Q 035160 58 LDMVGDFAFYFVVS 71 (71)
Q Consensus 58 ~D~~G~~i~~~l~~ 71 (71)
+|.|.++|+++|++
T Consensus 51 eDDFS~QLkaELek 64 (70)
T KOG4764|consen 51 EDDFSNQLKAELEK 64 (70)
T ss_pred hhHHHHHHHHHHHh
Confidence 57888888888864
No 132
>PRK07063 short chain dehydrogenase; Provisional
Probab=36.19 E-value=88 Score=19.37 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.6
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..++..+++.|.++.++++
T Consensus 16 s~gIG~~~a~~l~~~G~~vv~~~r 39 (260)
T PRK07063 16 AQGIGAAIARAFAREGAAVALADL 39 (260)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 367788899999999999877765
No 133
>PRK12831 putative oxidoreductase; Provisional
Probab=36.10 E-value=98 Score=21.70 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred eeeEeeCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 27 ~~~~~~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
+....-|| .+...|..++++|+++.++-+
T Consensus 142 ~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 44455556 346888999999999988853
No 134
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=36.01 E-value=15 Score=23.37 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|..+++.| +|.++
T Consensus 19 a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 19 VSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred HHHHhcccCCCC-EEEEE
Confidence 389999999999 88776
No 135
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=35.85 E-value=91 Score=19.15 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.3
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+.+.+..+++.|.++.++++
T Consensus 21 ~g~iG~~la~~l~~~G~~Vi~~~r 44 (247)
T PRK08945 21 GDGIGREAALTYARHGATVILLGR 44 (247)
T ss_pred CchHHHHHHHHHHHCCCcEEEEeC
Confidence 467779999999999998877654
No 136
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=35.55 E-value=84 Score=19.75 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.3
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+...+..+++.|.++.++++
T Consensus 19 s~giG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 19 GGVLGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 356678999999999998877654
No 137
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=35.35 E-value=41 Score=21.36 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=22.5
Q ss_pred EeeCChHHHHHHHHHhcCCccEEEE
Q 035160 30 YVLGGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~~lis 54 (71)
.+.||.+.-.|..+++.|++|.+++
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEc
Confidence 4568999999999999999999886
No 138
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=35.23 E-value=1.4e+02 Score=19.94 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=27.6
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEEeecCC
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D 59 (71)
.+-.+.|+.+..+...+.+.|.-.+.+-.+|++
T Consensus 147 aliSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~ 179 (286)
T TIGR01019 147 GIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGD 179 (286)
T ss_pred EEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 455667888877778888999999999999987
No 139
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=35.04 E-value=41 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeec
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG 57 (71)
.|..+.=.|..|++-|.+|.++++-.
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc
Confidence 46677788888988999999988644
No 140
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=34.60 E-value=1.1e+02 Score=21.21 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.4
Q ss_pred eeeEeeCC-hHHHHHHHHHhc--CCccEEEE
Q 035160 27 KANYVLGG-VARNVAECMSKL--GAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG-~a~N~A~~l~rL--G~~~~lis 54 (71)
..-..-|| .++.+|+.|++. |.+|.++=
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE 56 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLE 56 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 44445556 789999999998 88887774
No 141
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=34.58 E-value=40 Score=23.28 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCccEEEEee
Q 035160 36 ARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~v 56 (71)
+.-.|++++|.|.+|.|+=+-
T Consensus 11 G~~AAi~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 11 GVAAAIAAARAGAKVLLIEKG 31 (428)
T ss_dssp HHHHHHHHHHTTS-EEEE-SS
T ss_pred HHHHHHHHHHCCCEEEEEECC
Confidence 366788999999999998643
No 142
>PRK04148 hypothetical protein; Provisional
Probab=34.48 E-value=39 Score=20.08 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=17.2
Q ss_pred EeeCChHHHHHHHHHhcCCccEEE
Q 035160 30 YVLGGVARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~~li 53 (71)
.-.| .+.++|..|+++|++|.-+
T Consensus 23 IG~G-fG~~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 23 LGIG-FYFKVAKKLKESGFDVIVI 45 (134)
T ss_pred EEec-CCHHHHHHHHHCCCEEEEE
Confidence 3445 7778999999999876543
No 143
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.26 E-value=47 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.4
Q ss_pred eeEeeCChHHHHHHHHHhcCCc
Q 035160 28 ANYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~ 49 (71)
.-.-.||.+..+|.+|+|.|..
T Consensus 25 livG~GglGs~va~~La~~Gvg 46 (228)
T cd00757 25 LVVGAGGLGSPAAEYLAAAGVG 46 (228)
T ss_pred EEECCCHHHHHHHHHHHHcCCC
Confidence 3455799999999999999973
No 144
>PRK09242 tropinone reductase; Provisional
Probab=33.86 E-value=91 Score=19.27 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..++..+.+.|.++.++++
T Consensus 18 ~~gIG~~~a~~l~~~G~~v~~~~r 41 (257)
T PRK09242 18 SKGIGLAIAREFLGLGADVLIVAR 41 (257)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeC
Confidence 356778999999999998877765
No 145
>PRK07035 short chain dehydrogenase; Provisional
Probab=33.61 E-value=91 Score=19.17 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHhcCCccEEEEe
Q 035160 33 GGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
||-+...+..+.+.|.++.++++
T Consensus 18 ~gIG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 18 RGIGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeC
Confidence 56678889999999998887765
No 146
>PRK06153 hypothetical protein; Provisional
Probab=33.28 E-value=40 Score=23.70 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.6
Q ss_pred eEeeCChHHHHHHHHHhcCC
Q 035160 29 NYVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~ 48 (71)
-.-.||.+..++..|+|+|.
T Consensus 181 IVG~GG~GS~Va~~LAR~GV 200 (393)
T PRK06153 181 IIGLGGTGSYILDLVAKTPV 200 (393)
T ss_pred EEcCCccHHHHHHHHHHcCC
Confidence 34579999999999999996
No 147
>PRK08328 hypothetical protein; Provisional
Probab=32.97 E-value=50 Score=20.97 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.4
Q ss_pred eeEeeCChHHHHHHHHHhcCCc
Q 035160 28 ANYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~ 49 (71)
.-.-.||.+.++|.+|++.|..
T Consensus 31 lIiG~GGlGs~ia~~La~~Gvg 52 (231)
T PRK08328 31 AVVGVGGLGSPVAYYLAAAGVG 52 (231)
T ss_pred EEECCCHHHHHHHHHHHHcCCC
Confidence 3445799999999999999974
No 148
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.94 E-value=34 Score=21.98 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.7
Q ss_pred eEeeCChHHHHHHHHHhcCC
Q 035160 29 NYVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~ 48 (71)
-.-.||.+..+|.+|+|.|.
T Consensus 16 VvG~GGvGs~va~~Lar~GV 35 (231)
T cd00755 16 VVGLGGVGSWAAEALARSGV 35 (231)
T ss_pred EECCCHHHHHHHHHHHHcCC
Confidence 34579999999999999997
No 149
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=32.84 E-value=52 Score=21.67 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=19.6
Q ss_pred eeEeeCChH-----HHHHHHHHhcCCccEEE
Q 035160 28 ANYVLGGVA-----RNVAECMSKLGAKPYMI 53 (71)
Q Consensus 28 ~~~~~GG~a-----~N~A~~l~rLG~~~~li 53 (71)
+.-.-||++ +|.|..+++.|.+|.++
T Consensus 98 v~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 98 VIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 333446654 89999999999988776
No 150
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=32.81 E-value=87 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.2
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .++.+|..|++.|.+|.++=+
T Consensus 9 aG~~G~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 9 AGITGVTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeC
Confidence 45 678999999999999988854
No 151
>PRK05867 short chain dehydrogenase; Provisional
Probab=32.55 E-value=94 Score=19.20 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.+|-+...|..+++.|.++.++++
T Consensus 18 s~gIG~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 18 STGIGKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CchHHHHHHHHHHHCCCEEEEEcC
Confidence 356788899999999998877654
No 152
>PRK01215 competence damage-inducible protein A; Provisional
Probab=32.39 E-value=1.5e+02 Score=19.47 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
+.-.+..|.++|.++.....++||..
T Consensus 25 ~~~l~~~L~~~G~~v~~~~~v~Dd~~ 50 (264)
T PRK01215 25 ASWIARRLTYLGYTVRRITVVMDDIE 50 (264)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHH
Confidence 34556778899999999999999864
No 153
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=32.23 E-value=73 Score=20.11 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.0
Q ss_pred EeeCChH-HHHHHHHHhcCCccEEEEe
Q 035160 30 YVLGGVA-RNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 30 ~~~GG~a-~N~A~~l~rLG~~~~lis~ 55 (71)
...||+- .=.|+-|.|||.++.|++.
T Consensus 6 LfSGGKDSSLaA~iL~klgyev~LVTv 32 (198)
T COG2117 6 LFSGGKDSSLAALILDKLGYEVELVTV 32 (198)
T ss_pred EecCCCchhHHHHHHHHhCCCcEEEEE
Confidence 3456654 4567889999999999985
No 154
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=32.15 E-value=86 Score=22.23 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=19.9
Q ss_pred eCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
-|| ++.-.|.+|+|.|.+|.++-.
T Consensus 7 GgGlAGleaA~~LAr~G~~V~LiE~ 31 (433)
T TIGR00137 7 GGGLAGSEAAWQLAQAGVPVILYEM 31 (433)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEec
Confidence 345 567889999999999999974
No 155
>PRK06197 short chain dehydrogenase; Provisional
Probab=31.81 E-value=97 Score=19.91 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=19.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..+|..+++.|.++.++++
T Consensus 25 s~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 25 NTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeC
Confidence 467889999999999998777654
No 156
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=31.33 E-value=65 Score=18.35 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
+.|.|..+++.|.+|.++-.
T Consensus 18 a~~lA~~la~~~~~Vllid~ 37 (157)
T PF13614_consen 18 ALNLAAALARKGKKVLLIDF 37 (157)
T ss_dssp HHHHHHHHHHTTT-EEEEE-
T ss_pred HHHHHHHHHhcCCCeEEEEC
Confidence 48999999999999666543
No 157
>PRK06128 oxidoreductase; Provisional
Probab=30.95 E-value=1.1e+02 Score=19.59 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHhcCCccEEEE
Q 035160 33 GGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis 54 (71)
||-+..+|..+++.|.++.+..
T Consensus 65 ~gIG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 65 SGIGRATAIAFAREGADIALNY 86 (300)
T ss_pred CcHHHHHHHHHHHcCCEEEEEe
Confidence 6778999999999999986643
No 158
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.93 E-value=74 Score=16.10 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCccEEEE
Q 035160 35 VARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis 54 (71)
++...|..|++.|.++.++=
T Consensus 7 sGl~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 7 SGLAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEe
Confidence 45778889999999887763
No 159
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=30.85 E-value=63 Score=22.64 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=15.3
Q ss_pred CChH-HHHHHHHHhcCCccEEEE
Q 035160 33 GGVA-RNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 33 GG~a-~N~A~~l~rLG~~~~lis 54 (71)
||-| .=+|++++|+|.+|.|++
T Consensus 7 gG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 7 GGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp SSHHHHHHHHHHHHTT--EEEEE
T ss_pred CCHHHHHHHHHHHHCCCCEEEEe
Confidence 4433 557889999999999994
No 160
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=30.50 E-value=51 Score=22.32 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.9
Q ss_pred eeEeeCChHHHHHHHHHhcCC
Q 035160 28 ANYVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~ 48 (71)
.-.-.||.+.++|..|++.|.
T Consensus 28 lVvG~GglGs~va~~La~aGv 48 (339)
T PRK07688 28 LIIGAGALGTANAEMLVRAGV 48 (339)
T ss_pred EEECCCHHHHHHHHHHHHcCC
Confidence 345578999999999999998
No 161
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=30.34 E-value=56 Score=20.76 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.0
Q ss_pred EeeCChHHHHHHHHHhcCCccEEEE
Q 035160 30 YVLGGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~~lis 54 (71)
.+.|..+...|..+.+.|++|.++.
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEEEEE
Confidence 4568899999999999999999886
No 162
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=30.32 E-value=67 Score=22.17 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.4
Q ss_pred eCChH---HHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVA---RNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a---~N~A~~l~rLG~~~~lis~v 56 (71)
.||-+ ...+.+|+++|++|..+++-
T Consensus 16 ~GGl~~~v~~L~~aL~~~G~~v~v~~p~ 43 (473)
T TIGR02095 16 TGGLADVVGALPKALAALGHDVRVLLPA 43 (473)
T ss_pred cCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 57776 67778999999999998763
No 163
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=30.14 E-value=55 Score=22.73 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.4
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+...|..++++|.+|.++-+
T Consensus 12 ~GpaG~~aA~~aa~~G~~v~lie~ 35 (472)
T PRK05976 12 GGPGGYVAAIRAGQLGLKTALVEK 35 (472)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEc
Confidence 45 468899999999999999975
No 164
>PRK07139 amidase; Provisional
Probab=30.04 E-value=46 Score=23.22 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=36.3
Q ss_pred CEEeceeceeEeecCC--CCCCC-cceeceeeEeeCChHHHHHHHHHhcCCccEEEEeecCChhHH
Q 035160 1 MIIGGMVLDIHATPSI--PANPR-TTTLGKANYVLGGVARNVAECMSKLGAKPYMISALGLDMVGD 63 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~--~~~~~-~~~~~~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~ 63 (71)
+++|-.+++-...... .+..+ +.++-.....+||+..-.|.+++. |.+ -.+|.|.-|.
T Consensus 83 IilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAa-g~~----~alGtDtgGS 143 (439)
T PRK07139 83 KPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNK-NIS----FAIGSDTGDS 143 (439)
T ss_pred EEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHC-CCC----EEEEcCCCcc
Confidence 4667777775554321 22233 335556677899998888888774 542 4788887664
No 165
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=29.76 E-value=56 Score=24.30 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCccEEEEee
Q 035160 35 VARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~v 56 (71)
.+.-+|++++|+|.+|.++..=
T Consensus 15 AG~eAA~~aAR~G~kV~LiE~~ 36 (618)
T PRK05192 15 AGCEAALAAARMGAKTLLLTHN 36 (618)
T ss_pred HHHHHHHHHHHcCCcEEEEecc
Confidence 3456677899999999999753
No 166
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=29.64 E-value=1.1e+02 Score=19.51 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=17.5
Q ss_pred eCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
-|| .+.-.|..|+|.|.++.++=+
T Consensus 8 GaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 8 GAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp --SHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCHHHHHHHHHHHhcccccccchh
Confidence 345 346778899999999888754
No 167
>PRK00549 competence damage-inducible protein A; Provisional
Probab=29.63 E-value=1.4e+02 Score=20.84 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
+.-.+..|.++|.++..+..++||..
T Consensus 22 ~~~L~~~L~~~G~~v~~~~~v~Dd~~ 47 (414)
T PRK00549 22 AQFLSEKLAELGIDVYHQTVVGDNPE 47 (414)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHH
Confidence 34556678899999999999999963
No 168
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=29.39 E-value=59 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.|..+...|+.+++.|.+|.++-+
T Consensus 12 ~G~aGl~AA~~aa~~G~~V~vlEk 35 (466)
T PRK08274 12 GGNAALCAALAAREAGASVLLLEA 35 (466)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeC
Confidence 355677889999999999999876
No 169
>PRK06370 mercuric reductase; Validated
Probab=29.39 E-value=67 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.2
Q ss_pred eCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
-|| .+...|..++++|.+|.++-+
T Consensus 12 G~GpaG~~aA~~aa~~G~~v~lie~ 36 (463)
T PRK06370 12 GAGQAGPPLAARAAGLGMKVALIER 36 (463)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEec
Confidence 355 367889999999999999864
No 170
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=28.94 E-value=65 Score=20.23 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.0
Q ss_pred eEeeCChHHHHHHHHHhcCCc
Q 035160 29 NYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~ 49 (71)
-.-.||.+..+|..|+|.|..
T Consensus 33 ViG~GglGs~ia~~La~~Gvg 53 (212)
T PRK08644 33 IAGAGGLGSNIAVALARSGVG 53 (212)
T ss_pred EECcCHHHHHHHHHHHHcCCC
Confidence 345689999999999999985
No 171
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=28.78 E-value=65 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.2
Q ss_pred eeEeeCChHHHHHHHHHhcCCc
Q 035160 28 ANYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~ 49 (71)
.-.-.||.+.++|..|+|.|..
T Consensus 28 lvvG~GglGs~va~~La~~Gvg 49 (240)
T TIGR02355 28 LIVGLGGLGCAASQYLAAAGVG 49 (240)
T ss_pred EEECcCHHHHHHHHHHHHcCCC
Confidence 3445689999999999999964
No 172
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=28.57 E-value=77 Score=19.65 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCccEEEEe
Q 035160 36 ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~ 55 (71)
++|.|..+++.|.++.++..
T Consensus 16 ~~~la~~~a~~g~~~~l~~~ 35 (217)
T cd02035 16 AAATAVRLAEEGKKVLLVST 35 (217)
T ss_pred HHHHHHHHHHCCCcEEEEEC
Confidence 58999999999999999874
No 173
>PRK07478 short chain dehydrogenase; Provisional
Probab=28.44 E-value=1.4e+02 Score=18.38 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.6
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+...+..+++.|.++.++++
T Consensus 15 s~giG~~ia~~l~~~G~~v~~~~r 38 (254)
T PRK07478 15 SSGIGRAAAKLFAREGAKVVVGAR 38 (254)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC
Confidence 356778999999999999887765
No 174
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=28.40 E-value=1.2e+02 Score=17.22 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCccEEEEeecCCh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDM 60 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~ 60 (71)
+...+-.+.++|.++.....+.||.
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~Dd~ 44 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVPDDK 44 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCH
Confidence 4566778999999999999998774
No 175
>PRK07832 short chain dehydrogenase; Provisional
Probab=28.37 E-value=1.3e+02 Score=18.90 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=18.4
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..++..+++.|.++.+++.
T Consensus 9 s~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 9 ASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 367778889999999988766543
No 176
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=28.25 E-value=60 Score=21.06 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=22.3
Q ss_pred eEeeCChHHHHHHHHHhcC-CccEEEEee
Q 035160 29 NYVLGGVARNVAECMSKLG-AKPYMISAL 56 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG-~~~~lis~v 56 (71)
-.-.||.+.-++.+|+.+| .++.++++-
T Consensus 128 VlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 128 ILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred EEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3456899999999999999 677777664
No 177
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.24 E-value=83 Score=15.75 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
+.|.|..+++.|.++.++.
T Consensus 16 ~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 16 AANLAAALAKRGKRVLLID 34 (99)
T ss_pred HHHHHHHHHHCCCeEEEEC
Confidence 4788889999899887664
No 178
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=28.19 E-value=59 Score=22.02 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.7
Q ss_pred eeEeeCChHHHHHHHHHhcCC
Q 035160 28 ANYVLGGVARNVAECMSKLGA 48 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~ 48 (71)
.-.-.||.+..+|..|+|.|.
T Consensus 28 lIiG~GglGs~va~~La~aGv 48 (338)
T PRK12475 28 LIVGAGALGAANAEALVRAGI 48 (338)
T ss_pred EEECCCHHHHHHHHHHHHcCC
Confidence 344578899999999999997
No 179
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=28.11 E-value=79 Score=20.76 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=21.8
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEe
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
-.|..+.=.|..|++.|++|.++++
T Consensus 12 G~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 12 GTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 4677788899999999999999987
No 180
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=27.89 E-value=64 Score=23.47 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.2
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.|+.+.-.|+.+++.|.+|.++.+-
T Consensus 20 ~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 20 AGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3557788899999999999998653
No 181
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=27.83 E-value=1.4e+02 Score=18.46 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=19.2
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+.++|..+.+.|.++.+.++
T Consensus 19 ~g~iG~~ia~~l~~~G~~V~~~~r 42 (255)
T PRK07523 19 SQGIGYALAEGLAQAGAEVILNGR 42 (255)
T ss_pred cchHHHHHHHHHHHcCCEEEEEeC
Confidence 467889999999999998776543
No 182
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=27.77 E-value=1.4e+02 Score=19.66 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=25.4
Q ss_pred eeEeeCChHHHHHHHHHhcCCc-cEEEEeecCChhHHHHHHH
Q 035160 28 ANYVLGGVARNVAECMSKLGAK-PYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~-~~lis~vG~D~~G~~i~~~ 68 (71)
.-.-.||.+.-++.+|+++|.+ +.++.+ +....+.+.+.
T Consensus 131 lilGaGGaarAi~~aL~~~g~~~i~i~nR--~~~ka~~La~~ 170 (283)
T PRK14027 131 VQVGAGGVGNAVAYALVTHGVQKLQVADL--DTSRAQALADV 170 (283)
T ss_pred EEECCcHHHHHHHHHHHHCCCCEEEEEcC--CHHHHHHHHHH
Confidence 3456799999999999999975 444433 22334444443
No 183
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=27.74 E-value=77 Score=20.73 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCccEEEEeecC
Q 035160 36 ARNVAECMSKLGAKPYMISALGL 58 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~ 58 (71)
+++.|..+++.|.+|.+++.=..
T Consensus 2 a~a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 2 SCATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHHCCCeEEEEECCCC
Confidence 67899999999999999886433
No 184
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=27.64 E-value=73 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=20.2
Q ss_pred eCChHHHHHHHHHhcC-CccEEEEee
Q 035160 32 LGGVARNVAECMSKLG-AKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG-~~~~lis~v 56 (71)
.|..+...|+.+++.| .+|.++-+-
T Consensus 7 ~G~AGl~AA~~aa~~G~~~V~vlEk~ 32 (439)
T TIGR01813 7 SGFAGLSAALSAKKAGAANVVLLEKM 32 (439)
T ss_pred CCHHHHHHHHHHHHcCCccEEEEecC
Confidence 4667788999999999 898887653
No 185
>PRK06949 short chain dehydrogenase; Provisional
Probab=27.57 E-value=1.2e+02 Score=18.67 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=19.3
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||.+..++..+.+.|.++.++++
T Consensus 18 sg~IG~~~a~~l~~~G~~Vi~~~r 41 (258)
T PRK06949 18 SSGLGARFAQVLAQAGAKVVLASR 41 (258)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 477889999999999998766644
No 186
>PRK06194 hypothetical protein; Provisional
Probab=27.51 E-value=1.4e+02 Score=18.74 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHhcCCccEEEEe
Q 035160 33 GGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
||-+...+..+.+.|.++.++..
T Consensus 16 ggIG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 16 SGFGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeC
Confidence 56678899999999998877654
No 187
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=27.34 E-value=69 Score=19.83 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEeeCChHHHHHHHHHhcCCccEEEEee
Q 035160 29 NYVLGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
..+.|=.+.-.|..+.+.|++|.++..-
T Consensus 25 N~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 25 NRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp ES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 3456888999999999999999998754
No 188
>PRK08339 short chain dehydrogenase; Provisional
Probab=27.24 E-value=1.4e+02 Score=18.82 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.4
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.+|-+.-+|..+++.|.++.++++
T Consensus 17 s~gIG~aia~~l~~~G~~V~~~~r 40 (263)
T PRK08339 17 SKGIGFGVARVLARAGADVILLSR 40 (263)
T ss_pred CCcHHHHHHHHHHHCCCEEEEEeC
Confidence 357788899999999999877654
No 189
>PRK06110 hypothetical protein; Provisional
Probab=27.24 E-value=1.9e+02 Score=19.15 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=21.6
Q ss_pred EeeCChHHHHHHHHHhcCCccEEEEeecCC
Q 035160 30 YVLGGVARNVAECMSKLGAKPYMISALGLD 59 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~~lis~vG~D 59 (71)
.+.|--+.-+|..++++|.++.++-.-...
T Consensus 76 aSsGN~g~alA~~a~~~G~~~~ivvp~~~~ 105 (322)
T PRK06110 76 ATRGNHGQSVAFAARRHGLAATIVVPHGNS 105 (322)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 344555666788889999999888765544
No 190
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=27.21 E-value=87 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=22.1
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEee
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
-.|+.+.=.|..|++-|.+|.++.+-
T Consensus 9 GaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 9 GAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 35778888899999999999999873
No 191
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.18 E-value=89 Score=17.35 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCccEEEEe
Q 035160 37 RNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~ 55 (71)
...|..|.+-|++|.+.+.
T Consensus 16 lala~~L~~rGh~V~~~~~ 34 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATP 34 (139)
T ss_dssp HHHHHHHHHTT-EEEEEET
T ss_pred HHHHHHHhccCCeEEEeec
Confidence 5678899999999996654
No 192
>PRK06116 glutathione reductase; Validated
Probab=27.11 E-value=67 Score=22.11 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=19.7
Q ss_pred eCCh-HHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGV-ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~-a~N~A~~l~rLG~~~~lis~ 55 (71)
-||. +...|..++++|.+|.++=+
T Consensus 11 G~GpaG~~aA~~~a~~G~~V~liE~ 35 (450)
T PRK06116 11 GGGSGGIASANRAAMYGAKVALIEA 35 (450)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3553 58899999999999999964
No 193
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=27.11 E-value=72 Score=22.00 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.1
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+...|..++++|.+|.++-+
T Consensus 10 ~GpaG~~aA~~aa~~G~~V~lie~ 33 (446)
T TIGR01424 10 AGSGGVRAARLAANHGAKVAIAEE 33 (446)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEec
Confidence 44 467899999999999999964
No 194
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=27.06 E-value=1.3e+02 Score=18.62 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.4
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..+|..+.+.|.++.++.+
T Consensus 21 ~g~IG~~la~~l~~~G~~V~~~~r 44 (259)
T PRK08213 21 SRGLGLQIAEALGEAGARVVLSAR 44 (259)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeC
Confidence 467788999999999998876654
No 195
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=27.02 E-value=1.3e+02 Score=17.11 Aligned_cols=43 Identities=16% Similarity=0.094 Sum_probs=33.0
Q ss_pred eEeeCChHHHHHHHHH-------hcCCccEEEEeecCChhHHHHHHHhhC
Q 035160 29 NYVLGGVARNVAECMS-------KLGAKPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~-------rLG~~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
....++....+|.+|- +.|.+..++-.+-++..|..+.+.|++
T Consensus 73 ~l~~~~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~~~~~~~g~Ai~dRL~R 122 (125)
T PF03481_consen 73 SLSLPGDPEEAARNLFAALRELDELGVDLILIEGPPETGLGLAIMDRLRR 122 (125)
T ss_dssp EEESTTSHHHHHHHHHHHHHHHHHTT-SEEEEEEESGCCCHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHhhcCCCEEEEeeCCCcCcHHHHHHHHHH
Confidence 3467788777776543 348899999999999999999999863
No 196
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.94 E-value=69 Score=23.27 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=19.6
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.|+.+.-.|+.+++.|.+|.++.+
T Consensus 11 ~G~AGl~AAi~Aa~~G~~V~lieK 34 (589)
T PRK08641 11 GGLAGLMATIKAAEAGVHVDLFSL 34 (589)
T ss_pred chHHHHHHHHHHHHcCCcEEEEEc
Confidence 355667788999999999999874
No 197
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=26.91 E-value=1.5e+02 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=19.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..+|..+.+.|.++.++++
T Consensus 18 s~giG~~ia~~L~~~G~~vvl~~r 41 (254)
T PRK08085 18 AQGIGFLLATGLAEYGAEIIINDI 41 (254)
T ss_pred CChHHHHHHHHHHHcCCEEEEEcC
Confidence 367789999999999998877543
No 198
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=26.73 E-value=1.2e+02 Score=19.76 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=21.5
Q ss_pred eeEeeCChHHHHHHHHHhcCCc-cEEEEe
Q 035160 28 ANYVLGGVARNVAECMSKLGAK-PYMISA 55 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~-~~lis~ 55 (71)
.-.-.||.+.=++.+|..+|.+ +.++.+
T Consensus 129 lvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 129 LVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred EEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3456799999999999999974 555543
No 199
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=26.66 E-value=37 Score=20.66 Aligned_cols=16 Identities=19% Similarity=-0.014 Sum_probs=13.1
Q ss_pred ecCChhHHHHHHHhhC
Q 035160 56 LGLDMVGDFAFYFVVS 71 (71)
Q Consensus 56 vG~D~~G~~i~~~l~~ 71 (71)
.|||.||-.+.+.|++
T Consensus 14 ~~DDG~Gv~vae~L~~ 29 (160)
T COG0680 14 MGDDGFGVRVAEKLKK 29 (160)
T ss_pred cccCcccHHHHHHHHH
Confidence 4689999999888864
No 200
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=26.60 E-value=1.2e+02 Score=20.94 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCccEEEEeec------CChhHHHHHHHhh
Q 035160 36 ARNVAECMSKLGAKPYMISALG------LDMVGDFAFYFVV 70 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG------~D~~G~~i~~~l~ 70 (71)
+.-.|..++++|.++.++.+-. +....+.+.+.|+
T Consensus 181 g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~ 221 (460)
T PRK06292 181 GLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILS 221 (460)
T ss_pred HHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHh
Confidence 4567888999999999997633 2234455555543
No 201
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=26.60 E-value=2e+02 Score=20.19 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
+.-.+..|.++|.++.....++||..
T Consensus 22 ~~~l~~~L~~~G~~v~~~~~v~Dd~~ 47 (413)
T TIGR00200 22 AQWLADFLAHQGLPLSRRTTVGDNPE 47 (413)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHH
Confidence 34556678899999999999999864
No 202
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=26.57 E-value=78 Score=19.40 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=18.5
Q ss_pred eeEeeCChH-----HHHHHHHHh-cCCccEEE
Q 035160 28 ANYVLGGVA-----RNVAECMSK-LGAKPYMI 53 (71)
Q Consensus 28 ~~~~~GG~a-----~N~A~~l~r-LG~~~~li 53 (71)
+.-.-||.+ .|.|.++++ .|.+|.++
T Consensus 40 v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 40 VTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 333346654 789999986 59988876
No 203
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.34 E-value=76 Score=19.97 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=17.9
Q ss_pred eEeeCChH-----HHHHHHHHhcC-CccEEE
Q 035160 29 NYVLGGVA-----RNVAECMSKLG-AKPYMI 53 (71)
Q Consensus 29 ~~~~GG~a-----~N~A~~l~rLG-~~~~li 53 (71)
.-+=||++ .|.|..+++.+ .+|.++
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLli 38 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLLI 38 (259)
T ss_pred EecCCCccHHHHHHHHHHHHHHhcCCcEEEE
Confidence 33446664 89999999554 788775
No 204
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=26.28 E-value=96 Score=19.06 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCccEEEEeecCChhHHHHHH
Q 035160 37 RNVAECMSKLGAKPYMISALGLDMVGDFAFY 67 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~ 67 (71)
.|++..|+.+|.+..+|-.+|=|..-+++++
T Consensus 17 GNI~R~ca~tga~LhlI~PlGF~l~dk~lkR 47 (155)
T COG0219 17 GNIIRTCAATGAELHLIEPLGFDLDDKRLKR 47 (155)
T ss_pred hHHHHHHHhcCCeEEEEccCCCccchhhhhh
Confidence 5999999999999999999996655555543
No 205
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=26.28 E-value=1.4e+02 Score=19.17 Aligned_cols=27 Identities=26% Similarity=0.194 Sum_probs=20.8
Q ss_pred eEeeCChHHHHHHHHHhcCCccEEEEe
Q 035160 29 NYVLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
..-.||.+.-++.++++.|.++.++.+
T Consensus 122 iiGaGg~g~aia~~L~~~g~~v~v~~R 148 (270)
T TIGR00507 122 IIGAGGAARAVALPLLKADCNVIIANR 148 (270)
T ss_pred EEcCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 345688889999999999987776643
No 206
>PLN02780 ketoreductase/ oxidoreductase
Probab=26.23 E-value=1.4e+02 Score=19.76 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=19.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.+|-+...|..+++.|.++.++++
T Consensus 62 s~GIG~alA~~La~~G~~Vil~~R 85 (320)
T PLN02780 62 TDGIGKGFAFQLARKGLNLVLVAR 85 (320)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEC
Confidence 356678899999999999888765
No 207
>PF09876 DUF2103: Predicted metal-binding protein (DUF2103); InterPro: IPR018664 This family of various putative metal binding prokaryotic proteins has no known function.
Probab=26.20 E-value=72 Score=18.24 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHhcCC---ccEEEEeecCChhHHHHHHHhhC
Q 035160 43 MSKLGA---KPYMISALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 43 l~rLG~---~~~lis~vG~D~~G~~i~~~l~~ 71 (71)
++|-|. ++.+++...+...++.+++.|.+
T Consensus 70 lar~G~SvQEvfVVT~~~~~e~~~~i~~~Ln~ 101 (103)
T PF09876_consen 70 LARSGSSVQEVFVVTTLSDRELGERIIEELNE 101 (103)
T ss_pred EEecCCeeEEEEEEeeCCcHHHHHHHHHHHHh
Confidence 344454 57999999999999999998863
No 208
>PLN02681 proline dehydrogenase
Probab=26.01 E-value=1.4e+02 Score=21.24 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=33.9
Q ss_pred eEeeCChHHHHHHHHHhcCCccEEEEeecC--ChhHHHHHHHh
Q 035160 29 NYVLGGVARNVAECMSKLGAKPYMISALGL--DMVGDFAFYFV 69 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~~~lis~vG~--D~~G~~i~~~l 69 (71)
..++=|.+=+....|++.|.+|+...+.|. |...-.++...
T Consensus 384 F~qL~GM~d~ls~~L~~~G~~V~kYvPyG~~~e~~pYL~RRa~ 426 (455)
T PLN02681 384 FAQLLGMSDNLSFGLGNAGFRVSKYLPYGPVEEVIPYLLRRAE 426 (455)
T ss_pred EeccCCCCHHHHHHHHhcCCCEEEEeeccCchhhHHHHHHHHh
Confidence 356668889999999999999999999998 87776665543
No 209
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=25.75 E-value=1.6e+02 Score=18.13 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHhcCCccEEEEe
Q 035160 33 GGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
||-+..++..+.+.|.++.++++
T Consensus 21 ~~IG~~la~~l~~~G~~v~~~~r 43 (256)
T PRK06124 21 RGLGFEIARALAGAGAHVLVNGR 43 (256)
T ss_pred chHHHHHHHHHHHcCCeEEEEeC
Confidence 56668888888888998877765
No 210
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=25.56 E-value=92 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCccEEEEe
Q 035160 35 VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~ 55 (71)
.++.+|+.|++.|.+|.++-+
T Consensus 11 ~G~s~A~~L~~~G~~V~vle~ 31 (365)
T TIGR03364 11 LGLAHAYAAARRGLSVTVIER 31 (365)
T ss_pred HHHHHHHHHHHCCCeEEEEeC
Confidence 578899999999999888754
No 211
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=25.53 E-value=87 Score=20.32 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.1
Q ss_pred eeCChHHHHHHHHHhcCCccEEEE
Q 035160 31 VLGGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis 54 (71)
.-||.+.=+|..|...|.+|.++-
T Consensus 71 NNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 71 NNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999999998876
No 212
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=25.47 E-value=2.6e+02 Score=19.98 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=30.2
Q ss_pred eeeEeeCCh-HHHHHHHHHhcCCccEEEEeec------CChhHHHHHHHhh
Q 035160 27 KANYVLGGV-ARNVAECMSKLGAKPYMISALG------LDMVGDFAFYFVV 70 (71)
Q Consensus 27 ~~~~~~GG~-a~N~A~~l~rLG~~~~lis~vG------~D~~G~~i~~~l~ 70 (71)
++...-||. +.=.|-..++||.+|.++-+-. |....+.+.+.|+
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~ 225 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLE 225 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHH
Confidence 343333443 3667889999999999998765 3456667766665
No 213
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=25.35 E-value=74 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=22.1
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEeec
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~vG 57 (71)
-.|+.+.-.|+.++..|.+|.++++..
T Consensus 12 G~G~AGl~AAi~Aae~G~~VivleK~~ 38 (657)
T PRK08626 12 GAGLAGLRVAIAAAQRGLDTIVLSLVP 38 (657)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 346677889999999999999998654
No 214
>PRK06196 oxidoreductase; Provisional
Probab=25.17 E-value=1.7e+02 Score=18.98 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=19.4
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..+|..+++.|.++.++++
T Consensus 35 sggIG~~~a~~L~~~G~~Vv~~~R 58 (315)
T PRK06196 35 YSGLGLETTRALAQAGAHVIVPAR 58 (315)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 466778899999999999877654
No 215
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=25.11 E-value=1e+02 Score=20.45 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHH
Q 035160 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
|=.+.|.+++ +.+|.+|.|++ |||.+-+..++.
T Consensus 134 gE~~lna~~A-g~~gVPV~lvs--GD~~~~~ea~~~ 166 (263)
T cd08770 134 SEFLINAYTA-AYLGVPVVFVS--GDAGLCAEAKEL 166 (263)
T ss_pred CHHHHHHHHH-hhcCCCEEEEe--cCHHHHHHHHHh
Confidence 4445666654 56999999987 898877766654
No 216
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=25.06 E-value=1.6e+02 Score=17.67 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCccEEEEeecCChh
Q 035160 38 NVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 38 N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
-.+..+.++|.++.....+.||..
T Consensus 26 ~l~~~L~~~G~~v~~~~iv~Dd~~ 49 (163)
T TIGR02667 26 YLVERLTEAGHRLADRAIVKDDIY 49 (163)
T ss_pred HHHHHHHHCCCeEEEEEEcCCCHH
Confidence 445568889999999999999854
No 217
>PRK08643 acetoin reductase; Validated
Probab=24.93 E-value=1.8e+02 Score=17.92 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=19.0
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+...+..+.+.|.++.++++
T Consensus 11 s~giG~~la~~l~~~G~~v~~~~r 34 (256)
T PRK08643 11 GQGIGFAIAKRLVEDGFKVAIVDY 34 (256)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC
Confidence 366778899999999998877654
No 218
>PRK06701 short chain dehydrogenase; Provisional
Probab=24.92 E-value=1.8e+02 Score=18.68 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHhcCCccEEEEee
Q 035160 33 GGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
||-+.+++..+++.|.++.++++-
T Consensus 56 ggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 56 SGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 566789999999999998877663
No 219
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=24.89 E-value=77 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=20.3
Q ss_pred EeeCChHHHHHHHHHhcCCccEEEEe
Q 035160 30 YVLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.-.|+.+...|+.+++.|.+|.++-+
T Consensus 67 VG~G~AGl~AAi~Aa~~Ga~VivlEK 92 (506)
T PRK06481 67 VGAGGAGMSAAIEAKDAGMNPVILEK 92 (506)
T ss_pred ECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence 33455667888999999999988765
No 220
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=24.71 E-value=67 Score=21.41 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.8
Q ss_pred eeEeeCChHHHHHHHHHhcCCc
Q 035160 28 ANYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~ 49 (71)
...-.||.+..++-+|+|-|..
T Consensus 34 ~VvGiGGVGSw~veALaRsGig 55 (263)
T COG1179 34 CVVGIGGVGSWAVEALARSGIG 55 (263)
T ss_pred EEEecCchhHHHHHHHHHcCCC
Confidence 4456899999999999999963
No 221
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=24.63 E-value=91 Score=19.84 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=25.2
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeecCC-hhHHHHHHH
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALGLD-MVGDFAFYF 68 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG~D-~~G~~i~~~ 68 (71)
-||.+.-+|..|++.|.+|..+-.-... ...+..++.
T Consensus 61 NGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 61 NGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred ccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 4899999999999999888766544332 134444443
No 222
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=24.49 E-value=1e+02 Score=21.08 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.2
Q ss_pred eeCChH---HHHHHHHHhcCCccEEEEeecCC
Q 035160 31 VLGGVA---RNVAECMSKLGAKPYMISALGLD 59 (71)
Q Consensus 31 ~~GG~a---~N~A~~l~rLG~~~~lis~vG~D 59 (71)
..||-+ ...+.+|+++|++|..+++-=++
T Consensus 14 k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~ 45 (476)
T cd03791 14 KTGGLGDVVGALPKALAKLGHDVRVIMPKYGR 45 (476)
T ss_pred cCCcHHHHHHHHHHHHHHCCCeEEEEecCCcc
Confidence 468876 56677999999999999864443
No 223
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=24.44 E-value=84 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.1
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+...|..++++|.+|.++-+
T Consensus 12 ~GpaG~~aA~~aa~~G~~V~lie~ 35 (471)
T PRK06467 12 AGPAGYSAAFRAADLGLETVCVER 35 (471)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEec
Confidence 44 367888999999999999974
No 224
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=24.41 E-value=1.2e+02 Score=19.74 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCccEEEE
Q 035160 35 VARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis 54 (71)
++.+++-+|.++|+++.++.
T Consensus 23 s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 23 SGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred HHHHHHHHHHHcCCEEEEEc
Confidence 35688889999999987774
No 225
>PRK06139 short chain dehydrogenase; Provisional
Probab=24.37 E-value=1.4e+02 Score=19.83 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=19.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..+|..+++.|.++.++++
T Consensus 16 s~GIG~aia~~la~~G~~Vvl~~R 39 (330)
T PRK06139 16 SSGIGQATAEAFARRGARLVLAAR 39 (330)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEC
Confidence 367788899999999999887654
No 226
>PRK08401 L-aspartate oxidase; Provisional
Probab=24.29 E-value=79 Score=22.09 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=20.7
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.|+.+.-.|+.+++.|.+|.++.+-
T Consensus 9 aG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 9 GGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3566778899999999999998874
No 227
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=24.20 E-value=1.1e+02 Score=21.99 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=20.1
Q ss_pred EeeCChHHHHHHHHHhcCCccEEEEe
Q 035160 30 YVLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.-.||.+.-++.+|+++|.++.++.+
T Consensus 385 lGaGGagrAia~~L~~~G~~V~i~nR 410 (529)
T PLN02520 385 IGAGGAGKALAYGAKEKGARVVIANR 410 (529)
T ss_pred ECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 44578888888899999997776644
No 228
>PRK07109 short chain dehydrogenase; Provisional
Probab=24.19 E-value=1.4e+02 Score=19.76 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=19.3
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..+|..+++.|.++.++++
T Consensus 17 s~gIG~~la~~la~~G~~Vvl~~R 40 (334)
T PRK07109 17 SAGVGRATARAFARRGAKVVLLAR 40 (334)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEC
Confidence 467778888999999998877654
No 229
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=23.84 E-value=1.1e+02 Score=17.54 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHhcCCccEEEEeecCC-hhHHHHHH
Q 035160 34 GVARNVAECMSKLGAKPYMISALGLD-MVGDFAFY 67 (71)
Q Consensus 34 G~a~N~A~~l~rLG~~~~lis~vG~D-~~G~~i~~ 67 (71)
|++-|+|...-.-|..+..+--+|.| ..|+.+.+
T Consensus 10 GKGq~Va~GveaAGG~aivipG~~ADmklGdvM~~ 44 (115)
T PF14272_consen 10 GKGQKVAKGVEAAGGKAIVIPGVGADMKLGDVMKK 44 (115)
T ss_pred cCcchHhhHHHhcCCeEEEecCccccchHHHHHHh
Confidence 56778888888889998888888887 35555443
No 230
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=23.69 E-value=61 Score=18.99 Aligned_cols=17 Identities=12% Similarity=-0.091 Sum_probs=14.4
Q ss_pred eecCChhHHHHHHHhhC
Q 035160 55 ALGLDMVGDFAFYFVVS 71 (71)
Q Consensus 55 ~vG~D~~G~~i~~~l~~ 71 (71)
.=..|.||..+.+.||.
T Consensus 31 q~~~d~Fg~aL~~~LR~ 47 (121)
T PF07283_consen 31 QKDPDPFGQALENALRA 47 (121)
T ss_pred cCCCChHHHHHHHHHHh
Confidence 56789999999999873
No 231
>PRK10765 nitroreductase A; Provisional
Probab=23.68 E-value=1.9e+02 Score=18.41 Aligned_cols=36 Identities=17% Similarity=0.073 Sum_probs=26.7
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHh
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l 69 (71)
.|=.+-|..+++..||.-+.+++.+-+| -+.+.+.|
T Consensus 108 agiaaqnl~laA~slGLGs~~ig~~~~~--~~~v~~~L 143 (240)
T PRK10765 108 TAIMAQNALLAAESLGLGGVYIGGLRNN--IEAVTELL 143 (240)
T ss_pred HHHHHHHHHHHHHHcCCCEEeeCccccC--HHHHHHHh
Confidence 3455679999999999999999987554 24555544
No 232
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=23.61 E-value=84 Score=23.02 Aligned_cols=28 Identities=32% Similarity=0.278 Sum_probs=21.8
Q ss_pred eEeeCChHHHHHHHHHhcCCccEEEEee
Q 035160 29 NYVLGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
-.-.|+.+.-.|+.++..|.+|.++.+-
T Consensus 34 VIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 34 VVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred EECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 3445666778899999999999998774
No 233
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=23.57 E-value=99 Score=20.26 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=19.2
Q ss_pred EeeCChHHHHHHHHHhcCCc-cEEEEe
Q 035160 30 YVLGGVARNVAECMSKLGAK-PYMISA 55 (71)
Q Consensus 30 ~~~GG~a~N~A~~l~rLG~~-~~lis~ 55 (71)
.-.||.+.=++.+|+++|.+ +.++.+
T Consensus 132 ~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 132 IGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred ECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 33477777777788999987 777654
No 234
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=23.51 E-value=1.2e+02 Score=16.81 Aligned_cols=28 Identities=21% Similarity=0.048 Sum_probs=20.2
Q ss_pred eeEeeCChHHHHHHHHHhcCCccEEEEe
Q 035160 28 ANYVLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
+....||+..|.+.....-...+.+++-
T Consensus 63 l~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 63 LTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp EESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred EeeCCCCccchHHHHHhccCCCEEEEec
Confidence 4556799999999887765555556654
No 235
>PRK07804 L-aspartate oxidase; Provisional
Probab=23.42 E-value=88 Score=22.42 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.7
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeec
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG 57 (71)
.|+.+.-.|+.+++.|.+|.++.+-.
T Consensus 24 ~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 24 SGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 45567788899999999999987743
No 236
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=23.42 E-value=1.2e+02 Score=20.25 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHH
Q 035160 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
|=...|.+++ +.+|.+|.|++ |||..-+..++.
T Consensus 134 gE~~lNa~~A-g~~gVPV~lVs--GDd~~~~ea~~~ 166 (270)
T cd08769 134 NETLINAAYA-GEFGVPVVLVA--GDSELEKEVKEE 166 (270)
T ss_pred CHHHHHHHHH-hhcCCCEEEEe--cCHHHHHHHHHh
Confidence 4445666654 56999999987 888776666654
No 237
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=23.39 E-value=2e+02 Score=18.13 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHhc-CCccEEEEeecCChhHHHHHHHh
Q 035160 33 GGVARNVAECMSKL-GAKPYMISALGLDMVGDFAFYFV 69 (71)
Q Consensus 33 GG~a~N~A~~l~rL-G~~~~lis~vG~D~~G~~i~~~l 69 (71)
+=.+.-+|+..+++ |.++-.+++ |-|...+.+-++|
T Consensus 58 di~avRQAYvnaki~G~rPmvvaR-~ade~Ar~LA~~L 94 (209)
T COG4998 58 DINAVRQAYVNAKISGMRPMVVAR-GADEAARKLAEKL 94 (209)
T ss_pred chHHHHHHHHHHHhhcCCceeeec-ccCHHHHHHHHHh
Confidence 33456677766654 899999988 8898888887765
No 238
>PRK07985 oxidoreductase; Provisional
Probab=23.35 E-value=1.7e+02 Score=18.77 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.1
Q ss_pred CChHHHHHHHHHhcCCccEEEE
Q 035160 33 GGVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis 54 (71)
||-+..+|..+++.|.++.+..
T Consensus 59 ~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 59 SGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred CcHHHHHHHHHHHCCCEEEEec
Confidence 5777889999999999987653
No 239
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=23.34 E-value=1.7e+02 Score=18.98 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.2
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..++..+++.|.++.++++
T Consensus 15 s~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 15 SSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CChHHHHHHHHHHHCCCEEEEEEC
Confidence 367788999999999998877654
No 240
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=23.31 E-value=88 Score=21.43 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=20.8
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.|+.+.-.|+.+++.|.+|.++-+-
T Consensus 4 ~G~AGl~AA~~Aa~~Ga~V~vlEK~ 28 (432)
T TIGR02485 4 GGLAGLCAAIEARRAGASVLLLEAA 28 (432)
T ss_pred ccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3667788999999999999988763
No 241
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=23.13 E-value=66 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.3
Q ss_pred eeEeeCChHHHHHHHHHhcC
Q 035160 28 ANYVLGGVARNVAECMSKLG 47 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG 47 (71)
.-.-.||.+..++.+|+|+|
T Consensus 15 ~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 15 VLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred EEEcCChHHHHHHHHHHHcc
Confidence 44568999999999999986
No 242
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=23.05 E-value=2.4e+02 Score=18.84 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=28.1
Q ss_pred eeeEeeCChHHHHHHHHHhcCCccEEEEeecCC
Q 035160 27 KANYVLGGVARNVAECMSKLGAKPYMISALGLD 59 (71)
Q Consensus 27 ~~~~~~GG~a~N~A~~l~rLG~~~~lis~vG~D 59 (71)
.+-.+.|+.+......+.+.|.-.+.+-.+|++
T Consensus 149 aliSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~ 181 (291)
T PRK05678 149 GVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGD 181 (291)
T ss_pred EEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 556677888888888899999999999999987
No 243
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.85 E-value=1.2e+02 Score=19.97 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHhcCCccEEEEeec
Q 035160 33 GGVARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~vG 57 (71)
|..|.-+|..|.+.|..|.+++.+-
T Consensus 76 G~vA~evA~qL~~~G~~Va~L~llD 100 (257)
T COG3319 76 GAVAFEVAAQLEAQGEEVAFLGLLD 100 (257)
T ss_pred cHHHHHHHHHHHhCCCeEEEEEEec
Confidence 4456889999999999999998874
No 244
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=22.79 E-value=88 Score=22.50 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=19.8
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.|+.+...|+.+++.|.+|.++=+
T Consensus 15 ~G~aG~~aA~~aa~~G~~v~llEk 38 (557)
T PRK07843 15 SGAAGMVAALTAAHRGLSTVVVEK 38 (557)
T ss_pred cCHHHHHHHHHHHHCCCCEEEEeC
Confidence 456678899999999999998854
No 245
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=22.73 E-value=1.4e+02 Score=20.36 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCccEEEEeecCChh
Q 035160 36 ARNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
..|+|.+.+.||.+-..|+.|-.|+.
T Consensus 102 P~rvAeaV~~mgLkyVViTsVdRDDL 127 (306)
T COG0320 102 PERVAEAVKDMGLKYVVITSVDRDDL 127 (306)
T ss_pred HHHHHHHHHHhCCCeEEEEeeccccc
Confidence 47999999999999999999998754
No 246
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=1.5e+02 Score=19.80 Aligned_cols=36 Identities=14% Similarity=-0.014 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCCccEEEEeecCChhHHHHHHHhh
Q 035160 35 VARNVAECMSKLGAKPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~l~ 70 (71)
+|...|+.|++.+-+|+++-+-.+-..-+.+.+.|+
T Consensus 154 sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~ 189 (305)
T COG0492 154 SAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLK 189 (305)
T ss_pred HHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHH
Confidence 467889999999999999988776555566666654
No 247
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=22.48 E-value=1.9e+02 Score=18.03 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.1
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEe
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.-||.+.=+|..|+..+.++.+++.
T Consensus 56 NNGGDGlv~AR~L~~~~v~V~~~~~ 80 (205)
T TIGR00197 56 NNGGDGFVVARHLKGFGVEVFLLKK 80 (205)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcc
Confidence 3579999999999887888777754
No 248
>PRK06172 short chain dehydrogenase; Provisional
Probab=22.33 E-value=2e+02 Score=17.66 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=19.6
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..++..+.+.|.++.++.+
T Consensus 16 s~~iG~~ia~~l~~~G~~v~~~~r 39 (253)
T PRK06172 16 AAGIGRATALAFAREGAKVVVADR 39 (253)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeC
Confidence 467788999999999998877765
No 249
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=22.07 E-value=1.1e+02 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhcCCccEEEEe
Q 035160 35 VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~ 55 (71)
.+.-.|++|+|.|.+|.++-+
T Consensus 13 AGleAAlaLAr~Gl~V~LiE~ 33 (436)
T PRK05335 13 AGSEAAWQLAKRGVPVELYEM 33 (436)
T ss_pred HHHHHHHHHHhCCCcEEEEEc
Confidence 347788999999999999974
No 250
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=21.95 E-value=1.2e+02 Score=21.57 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.9
Q ss_pred eeeEeeCCh-HHHHHHHHHhcCCccEEEE
Q 035160 27 KANYVLGGV-ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 27 ~~~~~~GG~-a~N~A~~l~rLG~~~~lis 54 (71)
+.-..-||. +.-.|..++|+|.++.++.
T Consensus 214 dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 444455564 4677889999999999984
No 251
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.93 E-value=1e+02 Score=22.26 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=20.7
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.|+.+.-.|+.+++.|.+|.++.+-
T Consensus 13 ~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 13 GGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred ccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4667778888899999999999874
No 252
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=21.92 E-value=1.3e+02 Score=20.01 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHhcCCccEEEEeecCChhHHHHHHH
Q 035160 33 GGVARNVAECMSKLGAKPYMISALGLDMVGDFAFYF 68 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~vG~D~~G~~i~~~ 68 (71)
|=.+.|.+++ +.+|.+|.|++ |||.+-+..++.
T Consensus 133 gE~~lna~~A-g~~gVPV~lvs--GDd~~~~ea~~~ 165 (265)
T cd00281 133 AEFHLNALTA-GYYGVPVVMVA--GDAEVCKEAKAY 165 (265)
T ss_pred CHHHHHHHHH-hhcCCCEEEEe--cCHHHHHHHHHh
Confidence 4445666654 56999999987 888877666544
No 253
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=21.88 E-value=2.2e+02 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.1
Q ss_pred eeeEeeCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 27 KANYVLGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 27 ~~~~~~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
+....-|| .+...|..|++.|+++.++.+
T Consensus 142 ~VvIIGgGpaGl~aA~~l~~~g~~V~lie~ 171 (457)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEA 171 (457)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Confidence 44445555 357788899999999988853
No 254
>PTZ00058 glutathione reductase; Provisional
Probab=21.88 E-value=1.5e+02 Score=21.57 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=20.7
Q ss_pred eEeeCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 29 NYVLGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 29 ~~~~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
-..-|| .+.+.|..++++|.+|.+|=+
T Consensus 52 vVIG~G~aG~~aA~~aa~~G~~ValIEk 79 (561)
T PTZ00058 52 IVIGGGSGGMAAARRAARNKAKVALVEK 79 (561)
T ss_pred EEECcCHHHHHHHHHHHHcCCeEEEEec
Confidence 333445 478899999999999998863
No 255
>PRK07814 short chain dehydrogenase; Provisional
Probab=21.82 E-value=2.1e+02 Score=17.79 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=18.4
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+.-.+..+.+.|.++.++++
T Consensus 19 sggIG~~~a~~l~~~G~~Vi~~~r 42 (263)
T PRK07814 19 GRGLGAAIALAFAEAGADVLIAAR 42 (263)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeC
Confidence 356678888888899998877654
No 256
>PRK05866 short chain dehydrogenase; Provisional
Probab=21.76 E-value=1.8e+02 Score=18.74 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+...|..+++-|.++.++++
T Consensus 49 sggIG~~la~~La~~G~~Vi~~~R 72 (293)
T PRK05866 49 SSGIGEAAAEQFARRGATVVAVAR 72 (293)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEEC
Confidence 367778888889999998877654
No 257
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=21.73 E-value=96 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=18.5
Q ss_pred CCh-HHHHHHHHHhcCCccEEEEe
Q 035160 33 GGV-ARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG~-a~N~A~~l~rLG~~~~lis~ 55 (71)
||. +...|..++++|.+|.++-+
T Consensus 11 ~GpaG~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 11 FGKAGKTLAAKLASAGKKVALVEE 34 (438)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEec
Confidence 443 57888899999999998865
No 258
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.64 E-value=98 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=20.0
Q ss_pred eeCChHHHHHHHHHhcCCccEEEEe
Q 035160 31 VLGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 31 ~~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
-.|+.+...|+.+++.|.+|.++.+
T Consensus 42 G~G~AGl~AAi~Aae~G~~VilieK 66 (640)
T PRK07573 42 GTGLAGASAAATLGELGYNVKVFCY 66 (640)
T ss_pred CccHHHHHHHHHHHHcCCcEEEEec
Confidence 3455667888999999999999975
No 259
>PTZ00052 thioredoxin reductase; Provisional
Probab=21.64 E-value=97 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.0
Q ss_pred eCC-hHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
-|| .+...|..++++|.+|.++-+
T Consensus 12 G~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 12 GGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEec
Confidence 345 468899999999999999984
No 260
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.64 E-value=98 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=20.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.|+.+.-.|+.+++.|.+|.++.+-
T Consensus 58 ~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 58 AGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred ccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 4455677889999999999998874
No 261
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=21.62 E-value=1e+02 Score=21.41 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=18.8
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+...|..++++|.+|.++=+
T Consensus 10 ~GpaG~~aA~~aa~~G~~V~liE~ 33 (450)
T TIGR01421 10 GGSGGIASARRAAEHGAKALLVEA 33 (450)
T ss_pred cCHHHHHHHHHHHHCCCcEEEecc
Confidence 44 467899999999999999853
No 262
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.61 E-value=98 Score=21.98 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCccEEEEeecCCh
Q 035160 37 RNVAECMSKLGAKPYMISALGLDM 60 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~vG~D~ 60 (71)
-+=|..++++|.+|.+++-+++-.
T Consensus 30 qYHA~Sla~~gf~VdliGy~~s~p 53 (444)
T KOG2941|consen 30 QYHALSLAKLGFQVDLIGYVESIP 53 (444)
T ss_pred HHHHHHHHHcCCeEEEEEecCCCC
Confidence 477999999999999999887643
No 263
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=21.47 E-value=1e+02 Score=21.29 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCCccEEEEe
Q 035160 35 VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~ 55 (71)
.+.+.|..++++|.+|.++-+
T Consensus 11 aG~~aA~~aa~~g~~v~lie~ 31 (463)
T TIGR02053 11 AAFAAAIKAAELGASVAMVER 31 (463)
T ss_pred HHHHHHHHHHHCCCeEEEEeC
Confidence 468899999999999999864
No 264
>PLN02253 xanthoxin dehydrogenase
Probab=21.40 E-value=2.2e+02 Score=17.84 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHhcCCccEEEEe
Q 035160 33 GGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
||-+...|..+++.|.++.++..
T Consensus 28 ~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 28 TGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred chHHHHHHHHHHHcCCEEEEEeC
Confidence 56678888899999999887754
No 265
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=21.35 E-value=1e+02 Score=19.73 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCccEE
Q 035160 36 ARNVAECMSKLGAKPYM 52 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~l 52 (71)
+.+.|.-+.+||.++.|
T Consensus 94 ark~aRilqkLgf~~~f 110 (200)
T KOG3302|consen 94 ARKYARILQKLGFPVKF 110 (200)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 57899999999998876
No 266
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=21.24 E-value=1e+02 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.8
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+.+.|..+++.|.++.++-+
T Consensus 9 ~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 9 GGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEec
Confidence 44 478999999999999999976
No 267
>PRK07831 short chain dehydrogenase; Provisional
Probab=21.20 E-value=2.2e+02 Score=17.64 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHhcCCccEEEE
Q 035160 34 GVARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 34 G~a~N~A~~l~rLG~~~~lis 54 (71)
|-+..++..+++.|.++.++.
T Consensus 29 gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 29 GIGSATARRALEEGARVVISD 49 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEEe
Confidence 466888888999999876654
No 268
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=21.18 E-value=1.1e+02 Score=18.54 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=19.1
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.|=.+...|..+++.|++|.++-.
T Consensus 7 aG~mG~~iA~~~a~~G~~V~l~d~ 30 (180)
T PF02737_consen 7 AGTMGRGIAALFARAGYEVTLYDR 30 (180)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEE-S
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEC
Confidence 355678899999999999999987
No 269
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=21.17 E-value=1.1e+02 Score=22.35 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.0
Q ss_pred eCChHHHHHHHHHhcCCccEEEEeec
Q 035160 32 LGGVARNVAECMSKLGAKPYMISALG 57 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~vG 57 (71)
.|+.+.-.|+.+++.|.+|.++.+-.
T Consensus 6 ~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 6 TGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred ccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 45667888999999999999988643
No 270
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=21.16 E-value=2.2e+02 Score=17.57 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+...|..+++.|.++.++++
T Consensus 17 s~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 17 AQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 467788999999999998877654
No 271
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=21.14 E-value=1.2e+02 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred eEeeCChHHHHHHHHHhcCCccEEE
Q 035160 29 NYVLGGVARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~~~li 53 (71)
...|+|++--.+-.|.++|.++.++
T Consensus 163 EsrPd~sG~lm~~~L~~~~IPvtlv 187 (313)
T KOG1466|consen 163 ESRPDGSGKLMAKELKKLGIPVTLV 187 (313)
T ss_pred cCCCCCchhHHHHHHHhcCCCeEEE
Confidence 3458899999999999999999887
No 272
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=21.02 E-value=1.4e+02 Score=15.77 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCccEEEE
Q 035160 36 ARNVAECMSKLGAKPYMIS 54 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~lis 54 (71)
+.|.|..+++.|.++.++-
T Consensus 17 ~~~la~~~~~~~~~vl~~d 35 (104)
T cd02042 17 AVNLAAALARRGKRVLLID 35 (104)
T ss_pred HHHHHHHHHhCCCcEEEEe
Confidence 4788999998888887763
No 273
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=20.96 E-value=1.1e+02 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCccEEEEe
Q 035160 35 VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~ 55 (71)
.+.-.|+.+++.|.++.++-+
T Consensus 32 AGL~aA~~la~~G~~V~vlEk 52 (254)
T TIGR00292 32 SGLTAAYYLAKNGLKVCVLER 52 (254)
T ss_pred HHHHHHHHHHHCCCcEEEEec
Confidence 446778889999999998855
No 274
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=20.84 E-value=74 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=16.8
Q ss_pred HHHHHHhcCC---ccEEEEeecCChh
Q 035160 39 VAECMSKLGA---KPYMISALGLDMV 61 (71)
Q Consensus 39 ~A~~l~rLG~---~~~lis~vG~D~~ 61 (71)
.++.=.-||. +-.|+++||+|.|
T Consensus 25 ~sYHk~CLG~Rs~ReHlVTKVg~d~F 50 (175)
T PF15446_consen 25 SSYHKACLGPRSQREHLVTKVGDDDF 50 (175)
T ss_pred hHHHhhhcCCccccceeeEEEcCCce
Confidence 4455555775 4589999999986
No 275
>PRK09126 hypothetical protein; Provisional
Probab=20.84 E-value=1.1e+02 Score=20.24 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=17.8
Q ss_pred eCChH-HHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVA-RNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a-~N~A~~l~rLG~~~~lis~ 55 (71)
-||.+ .-.|..|++.|.+|.++=+
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 10 GAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 34443 4677889999999998854
No 276
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=20.77 E-value=1.1e+02 Score=20.18 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCCccEEEEe
Q 035160 35 VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~ 55 (71)
.++.+|+.|++.|.+|.++-+
T Consensus 11 ~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 11 MGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 578999999999999988865
No 277
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=20.73 E-value=2.1e+02 Score=17.30 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=19.5
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.||-+...|..+.+.|.++.++..-
T Consensus 7 s~giG~~~a~~l~~~G~~v~~~~~~ 31 (239)
T TIGR01831 7 SRGIGRAIANRLAADGFEICVHYHS 31 (239)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4677888999999999987766543
No 278
>PRK08223 hypothetical protein; Validated
Probab=20.66 E-value=79 Score=21.19 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=18.4
Q ss_pred eeEeeCChHHHHHHHHHhcCCc
Q 035160 28 ANYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 28 ~~~~~GG~a~N~A~~l~rLG~~ 49 (71)
.-.-.||-+..+|..|++.|..
T Consensus 31 lIvG~GGLGs~va~~LA~aGVG 52 (287)
T PRK08223 31 AIAGLGGVGGIHLLTLARLGIG 52 (287)
T ss_pred EEECCCHHHHHHHHHHHHhCCC
Confidence 3445789999999999999985
No 279
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.63 E-value=1.2e+02 Score=20.32 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=18.5
Q ss_pred eCChH-HHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVA-RNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a-~N~A~~l~rLG~~~~lis~v 56 (71)
-||.+ .-.|++|++.|.+|.++=+-
T Consensus 10 GgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 10 GGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred CcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 34543 56677899999999998753
No 280
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=20.58 E-value=1.2e+02 Score=20.92 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCccEEEEeecCChh
Q 035160 37 RNVAECMSKLGAKPYMISALGLDMV 61 (71)
Q Consensus 37 ~N~A~~l~rLG~~~~lis~vG~D~~ 61 (71)
-|+|-++++.|..-..++.|-.|+.
T Consensus 145 eNTAeAIasWgl~YiVlTSVDRDDl 169 (360)
T KOG2672|consen 145 ENTAEAIASWGLDYIVLTSVDRDDL 169 (360)
T ss_pred ccHHHHHHHcCCCeEEEEecccccC
Confidence 4999999999999999999987754
No 281
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=20.57 E-value=1.1e+02 Score=20.15 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCccEEEEe
Q 035160 35 VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 35 ~a~N~A~~l~rLG~~~~lis~ 55 (71)
.++.+|+.|++.|.+|.++-+
T Consensus 14 ~G~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 14 MGSAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred HHHHHHHHHHHCCCeEEEEec
Confidence 678899999999999988853
No 282
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=20.53 E-value=2.2e+02 Score=17.43 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=19.4
Q ss_pred eCChHHHHHHHHHhcCCccEEEEe
Q 035160 32 LGGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
.||-+..++..|.+.|.++.++++
T Consensus 16 sg~iG~~la~~l~~~G~~v~~~~r 39 (262)
T PRK13394 16 ASGIGKEIALELARAGAAVAIADL 39 (262)
T ss_pred CChHHHHHHHHHHHCCCeEEEEeC
Confidence 477888999999999998776544
No 283
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=20.39 E-value=2.9e+02 Score=18.90 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCC-ccEEEEeecCChhHHHHHHHhh
Q 035160 36 ARNVAECMSKLGA-KPYMISALGLDMVGDFAFYFVV 70 (71)
Q Consensus 36 a~N~A~~l~rLG~-~~~lis~vG~D~~G~~i~~~l~ 70 (71)
|+--|++...|.. +++-++.||....+++.++.++
T Consensus 115 aAasavAa~~LA~~da~~laiIGaG~qA~~ql~a~~ 150 (330)
T COG2423 115 AAASAVAAKYLARKDASTLAIIGAGAQARTQLEALK 150 (330)
T ss_pred HHHHHHHHHHhccCCCcEEEEECCcHHHHHHHHHHH
Confidence 4566778888876 7999999999999999888765
No 284
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=20.38 E-value=1.2e+02 Score=20.89 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.1
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+...|..+++.|.++.++-+
T Consensus 11 gGpaGl~aA~~la~~g~~V~lie~ 34 (441)
T PRK08010 11 FGKAGKTLAVTLAKAGWRVALIEQ 34 (441)
T ss_pred CCHhHHHHHHHHHHCCCeEEEEcC
Confidence 44 468888999999999998885
No 285
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.37 E-value=1.1e+02 Score=21.33 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=19.3
Q ss_pred CC-hHHHHHHHHHhcCCccEEEEe
Q 035160 33 GG-VARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG-~a~N~A~~l~rLG~~~~lis~ 55 (71)
|| .+...|..+++.|.+|.++-+
T Consensus 11 ~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 11 GGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEec
Confidence 45 468899999999999999974
No 286
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=1.5e+02 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEeeCChHHHHHHHHHh-cCCc-cEEEE
Q 035160 29 NYVLGGVARNVAECMSK-LGAK-PYMIS 54 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~r-LG~~-~~lis 54 (71)
....||+++|+++.||- ||.+ +.|||
T Consensus 333 yi~~G~SVah~~~~LA~~lg~k~IIfIG 360 (594)
T COG2604 333 YIDTGGSVAHMCYELAVYLGFKNIIFIG 360 (594)
T ss_pred eeeccccHHHHHHHHHHHhCCCcEEEEe
Confidence 45679999999999997 7764 44543
No 287
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=20.31 E-value=1.4e+02 Score=18.11 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=19.0
Q ss_pred CCccEEEEeecCChh----------HHHHHHHhh
Q 035160 47 GAKPYMISALGLDMV----------GDFAFYFVV 70 (71)
Q Consensus 47 G~~~~lis~vG~D~~----------G~~i~~~l~ 70 (71)
|.....+=-+|+|.| ++...+.|+
T Consensus 33 g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~ 66 (153)
T PF00549_consen 33 GGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALE 66 (153)
T ss_dssp TCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHH
T ss_pred CCCceeEEEeCCCcccccCcCCCcCHHHHHHHHH
Confidence 888899999999999 666665553
No 288
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.25 E-value=1.1e+02 Score=22.25 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.3
Q ss_pred eCChHHHHHHHHHhcCCccEEEEee
Q 035160 32 LGGVARNVAECMSKLGAKPYMISAL 56 (71)
Q Consensus 32 ~GG~a~N~A~~l~rLG~~~~lis~v 56 (71)
.|+.+.-.|+.++..|.+|.++.+-
T Consensus 15 ~G~AGl~AAi~Aa~~G~~V~lleK~ 39 (588)
T PRK08958 15 AGGAGMRAALQISQSGQSCALLSKV 39 (588)
T ss_pred ccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3556677888999999999999885
No 289
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=20.24 E-value=1.2e+02 Score=19.50 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.6
Q ss_pred eEeeCChHHHHHHHHHhcCCc
Q 035160 29 NYVLGGVARNVAECMSKLGAK 49 (71)
Q Consensus 29 ~~~~GG~a~N~A~~l~rLG~~ 49 (71)
-.-.||.+..+|.+|++.|..
T Consensus 37 iiG~GglGs~va~~La~~Gvg 57 (245)
T PRK05690 37 VVGLGGLGCAASQYLAAAGVG 57 (245)
T ss_pred EECCCHHHHHHHHHHHHcCCC
Confidence 345689999999999999964
No 290
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.21 E-value=1.1e+02 Score=21.53 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHhcCCccEEEEe
Q 035160 33 GGVARNVAECMSKLGAKPYMISA 55 (71)
Q Consensus 33 GG~a~N~A~~l~rLG~~~~lis~ 55 (71)
|-.++.+|+.|++.|.+|.++=+
T Consensus 15 Gi~G~~~A~~la~rG~~V~LlEk 37 (502)
T PRK13369 15 GINGAGIARDAAGRGLKVLLCEK 37 (502)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEC
Confidence 44568899999999999998875
No 291
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=20.14 E-value=1.1e+02 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCccEEE
Q 035160 36 ARNVAECMSKLGAKPYMI 53 (71)
Q Consensus 36 a~N~A~~l~rLG~~~~li 53 (71)
+.|.|.+|++.|.++.++
T Consensus 65 t~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 65 TVNLALALASEGKKVGLL 82 (300)
T ss_pred HHHHHHHHhcCCCcEEEE
Confidence 389999999988887654
No 292
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=20.03 E-value=92 Score=22.20 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=28.5
Q ss_pred CEEeceeceeEeecCC--CCCCC-cceeceeeEeeCChHHHHHHHHHh
Q 035160 1 MIIGGMVLDIHATPSI--PANPR-TTTLGKANYVLGGVARNVAECMSK 45 (71)
Q Consensus 1 ~~iG~~~~D~~~~~~~--~~~~~-~~~~~~~~~~~GG~a~N~A~~l~r 45 (71)
+++|-.|+|-...... .+..+ +.++-.....+||+..-.|.+++.
T Consensus 120 viiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSAaAVAa 167 (475)
T COG0154 120 VILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAA 167 (475)
T ss_pred EEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHh
Confidence 4688899997665432 22333 334545777788887777776653
No 293
>COG4743 Predicted membrane protein [Function unknown]
Probab=20.02 E-value=72 Score=21.40 Aligned_cols=33 Identities=15% Similarity=-0.019 Sum_probs=24.8
Q ss_pred EeecCCCCCCCcceeceeeEeeCChHHHHHHHH
Q 035160 11 HATPSIPANPRTTTLGKANYVLGGVARNVAECM 43 (71)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~GG~a~N~A~~l 43 (71)
..++-..|.+++....-+-..|||+|.|.--++
T Consensus 188 l~Yvi~nP~pgE~FTEFYILGP~GkA~~YPtn~ 220 (316)
T COG4743 188 LAYVITNPKPGEAFTEFYILGPGGKAYDYPTNL 220 (316)
T ss_pred eEEEecCCCCccceeEEEEecCCccccCCCcce
Confidence 345555677888888888889999998766555
Done!