BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035162
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42921|PT191_SCHPO Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC16A3.16 PE=3 SV=1
Length = 85
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
M +SCK + +L CL SDC+ V+K+S REC K +P EC L E Y CKR +D
Sbjct: 1 MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKRQMLD 59
Query: 61 MRARIR 66
M R R
Sbjct: 60 MTKRYR 65
>sp|Q5RFJ0|COA5_PONAB Cytochrome c oxidase assembly factor 5 OS=Pongo abelii GN=Coa5
PE=3 SV=1
Length = 74
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
+C GL +L CL ESDCV E +S R+C E C L+ +F CKR +D RA
Sbjct: 13 ACGGLKEDLGACLLESDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKRSVLDNRA 66
Query: 64 RIRGNKGY 71
R RG KGY
Sbjct: 67 RFRGRKGY 74
>sp|Q86WW8|COA5_HUMAN Cytochrome c oxidase assembly factor 5 OS=Homo sapiens GN=COA5
PE=1 SV=1
Length = 74
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
+C GL +L CL +SDCV E +S R+C E C L+ +F CKR +D RA
Sbjct: 13 ACAGLKEDLGACLLQSDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKRSVLDNRA 66
Query: 64 RIRGNKGY 71
R RG KGY
Sbjct: 67 RFRGRKGY 74
>sp|Q28CA1|COA5_XENTR Cytochrome c oxidase assembly factor 5 OS=Xenopus tropicalis
GN=coa5 PE=3 SV=1
Length = 75
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 5 CKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRAR 64
C G+ +L CL ++DCV E +S +EC E C L+ T+F CKR +D RAR
Sbjct: 15 CAGVKEDLKSCLLQTDCVLQEGKSPKECLKE------GYCKALQVTFFECKRSILDTRAR 68
Query: 65 IRGNKGY 71
RG KGY
Sbjct: 69 FRGRKGY 75
>sp|A1L3N6|COA5_XENLA Cytochrome c oxidase assembly factor 5 OS=Xenopus laevis GN=coa5
PE=3 SV=1
Length = 75
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 5 CKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRAR 64
C G+ +L CL +SDCV E +S +EC E C L+ T+F CKR +D RAR
Sbjct: 15 CGGVKEDLKNCLLQSDCVLQEGKSPKECLKE------GYCKALQVTFFECKRSILDNRAR 68
Query: 65 IRGNKGY 71
RG KGY
Sbjct: 69 FRGRKGY 75
>sp|Q3ZCK8|COA5_BOVIN Cytochrome c oxidase assembly factor 5 OS=Bos taurus GN=COA5 PE=3
SV=1
Length = 74
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
+C G+ +L CL +SDCV E +S R+C E C L+ ++F CKR +D R+
Sbjct: 13 ACAGVKEDLGLCLLQSDCVLKEGKSPRQCLKE------GNCKALKYSFFECKRSMLDARS 66
Query: 64 RIRGNKGY 71
R RG KGY
Sbjct: 67 RFRGRKGY 74
>sp|Q99M07|COA5_MOUSE Cytochrome c oxidase assembly factor 5 OS=Mus musculus GN=Coa5
PE=2 SV=1
Length = 74
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 4 SCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
+C G+ +L CL +S CV E +S R+C E C L+ ++F CKR +D R+
Sbjct: 13 ACAGVKEDLGACLLQSACVLQEGKSPRQCLKE------GNCRALQYSFFECKRSMLDARS 66
Query: 64 RIRGNKGY 71
R RG KGY
Sbjct: 67 RFRGRKGY 74
>sp|Q02772|PT191_YEAST Mitochondrial protein PET191 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PET191 PE=1 SV=1
Length = 108
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 MSKSCKGLAMELVKCLSESDCVKVEKRSFRECAG--EKSPCIPSECVGLRETYFNCKRGQ 58
M SCK + CL S CV +E+ + +EC E + +P C+ + + +CKRG
Sbjct: 1 MVASCKDQKKAVAICLQRSPCVMIERHNPQECLDNPELNKDLPELCIAQMKAFLDCKRGI 60
Query: 59 VDMRARIRGN 68
VDM R GN
Sbjct: 61 VDMTKRFTGN 70
>sp|Q0P451|COA5_DANRE Cytochrome c oxidase assembly factor 5 OS=Danio rerio GN=coa5
PE=3 SV=1
Length = 75
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 3 KSCKGLAMELVKCLSESDCVKVEKRSFRECAGEKSPCIPSECVGLRETYFNCKRGQVDMR 62
++C GL + CL + DCV E + EC E C ++ +F CKR +D R
Sbjct: 13 RACSGLREDFKACLLQHDCVVKEGKKPSECLKE------GHCRSMQVAFFECKRSMLDTR 66
Query: 63 ARIRGNKG 70
+R RG KG
Sbjct: 67 SRFRGRKG 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,280,788
Number of Sequences: 539616
Number of extensions: 762742
Number of successful extensions: 1205
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 10
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)