Query 035162
Match_columns 71
No_of_seqs 106 out of 137
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 15:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hp8_A HU-P8; leukemia, cystei 84.7 0.65 2.2E-05 27.6 2.4 34 29-63 14-47 (68)
2 1ei0_A P8MTCP1; helix-turn-hel 70.9 2.5 8.7E-05 22.1 1.9 28 28-56 9-36 (38)
3 2lql_A Coiled-coil-helix-coile 53.6 3.5 0.00012 26.1 0.5 54 2-56 12-73 (113)
4 2jm6_A NOXA; apoptosis, BCL-2, 17.2 51 0.0017 16.2 1.0 12 38-49 2-13 (27)
5 1u96_A Cytochrome C oxidase co 16.5 75 0.0026 18.7 1.8 16 43-58 46-61 (69)
6 1x6i_A Hypothetical protein YG 14.8 43 0.0015 20.0 0.4 14 47-60 9-22 (91)
7 2lqt_A Coiled-coil-helix-coile 13.8 77 0.0026 19.3 1.4 29 31-60 25-53 (85)
8 2zxt_A Maltose-binding peripla 13.4 75 0.0026 22.8 1.4 35 4-39 406-447 (465)
9 2pa8_L DNA-directed RNA polyme 13.0 28 0.00097 20.8 -0.8 28 26-53 62-89 (92)
10 1oig_A Dumpy, CG33196-PB; stru 12.5 28 0.00095 17.0 -0.8 10 14-23 3-12 (26)
No 1
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=84.71 E-value=0.65 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=25.6
Q ss_pred hhHHhcCCCCCChhhHHHHHHHHHhcccCCCCCCc
Q 035162 29 FRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63 (71)
Q Consensus 29 ~~eCL~~~~~~lp~eC~~lr~~f~eCKR~~lD~r~ 63 (71)
+++||..+ ..-++.|+.+..++.+|++..++.|+
T Consensus 14 iQ~CL~~N-~yd~skCq~~id~L~eCc~~~~~~~S 47 (68)
T 1hp8_A 14 IQKCLQAN-SYMESKCQAVIQELRKCCAQYPKGRS 47 (68)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHc-CCcHHHHHHHHHHHHHHHHHHccCCC
Confidence 45555432 35788999999999999998776554
No 2
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=70.93 E-value=2.5 Score=22.10 Aligned_cols=28 Identities=14% Similarity=0.466 Sum_probs=20.6
Q ss_pred ChhHHhcCCCCCChhhHHHHHHHHHhccc
Q 035162 28 SFRECAGEKSPCIPSECVGLRETYFNCKR 56 (71)
Q Consensus 28 t~~eCL~~~~~~lp~eC~~lr~~f~eCKR 56 (71)
-+++||... ..-++.|+.+..++.+|+.
T Consensus 9 a~q~CL~~n-~~d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 9 EIQKCLQAN-SYLESKCQAVIQELKKCAA 36 (38)
T ss_dssp HHHHHHHHT-TTCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcHHHHHHHHHHHHHHHh
Confidence 356677543 3567899999999999963
No 3
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=53.58 E-value=3.5 Score=26.05 Aligned_cols=54 Identities=22% Similarity=0.456 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHHhcC------ccccccCCChhHHhcC--CCCCChhhHHHHHHHHHhccc
Q 035162 2 SKSCKGLAMELVKCLSES------DCVKVEKRSFRECAGE--KSPCIPSECVGLRETYFNCKR 56 (71)
Q Consensus 2 ~~sC~~~r~~L~~Cl~~S------dCv~~~~~t~~eCL~~--~~~~lp~eC~~lr~~f~eCKR 56 (71)
++-|...-++...|..+. +|... ++....|..+ ...+|-..|..-..+|.+|-+
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~e-g~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~ 73 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYL-KMSIAQCTSSHPIIRQIRQACAQPFEAFEECLR 73 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHH-HHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 456888888888887532 47544 4567777765 345677788888888888854
No 4
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=17.25 E-value=51 Score=16.18 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=8.7
Q ss_pred CCChhhHHHHHH
Q 035162 38 PCIPSECVGLRE 49 (71)
Q Consensus 38 ~~lp~eC~~lr~ 49 (71)
.++-.||.+||+
T Consensus 2 ~~l~vecaqlr~ 13 (27)
T 2jm6_A 2 ADLKDECAQLRR 13 (27)
T ss_dssp TTHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 356678998875
No 5
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=16.52 E-value=75 Score=18.73 Aligned_cols=16 Identities=31% Similarity=0.762 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhcccCC
Q 035162 43 ECVGLRETYFNCKRGQ 58 (71)
Q Consensus 43 eC~~lr~~f~eCKR~~ 58 (71)
+|..|-.+|-+|-|+.
T Consensus 46 ~C~~lIeahk~CMr~~ 61 (69)
T 1u96_A 46 KCKEFIEKYKECMKGY 61 (69)
T ss_dssp GGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999998875
No 6
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=14.83 E-value=43 Score=20.03 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=10.5
Q ss_pred HHHHHHhcccCCCC
Q 035162 47 LRETYFNCKRGQVD 60 (71)
Q Consensus 47 lr~~f~eCKR~~lD 60 (71)
.++-.+.|+|||+-
T Consensus 9 ~~RL~~rsrRGmlE 22 (91)
T 1x6i_A 9 KARIHWACRRGMRE 22 (91)
T ss_dssp HHHHHHHTCCSSHH
T ss_pred HHHHHHHHHcchHH
Confidence 45666789999874
No 7
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=13.83 E-value=77 Score=19.31 Aligned_cols=29 Identities=24% Similarity=0.372 Sum_probs=20.6
Q ss_pred HHhcCCCCCChhhHHHHHHHHHhcccCCCC
Q 035162 31 ECAGEKSPCIPSECVGLRETYFNCKRGQVD 60 (71)
Q Consensus 31 eCL~~~~~~lp~eC~~lr~~f~eCKR~~lD 60 (71)
.||..+. .--+.|+....+|=+||..-+.
T Consensus 25 kCL~~n~-yDr~~C~~yF~~Yk~CKk~W~~ 53 (85)
T 2lqt_A 25 RCLDENN-YDRERCSTYFLRYKNCRRFWNS 53 (85)
T ss_dssp HHHHHTT-TCTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 4776542 2256899999999999975443
No 8
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=13.40 E-value=75 Score=22.82 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhc-------CccccccCCChhHHhcCCCCC
Q 035162 4 SCKGLAMELVKCLSE-------SDCVKVEKRSFRECAGEKSPC 39 (71)
Q Consensus 4 sC~~~r~~L~~Cl~~-------SdCv~~~~~t~~eCL~~~~~~ 39 (71)
+|-..-.+-..|.+. |||+..- .+.++|+++++..
T Consensus 406 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~c~~~~~~~ 447 (465)
T 2zxt_A 406 PCGEEFKSAFSCFVYSEAEPKGIDCVEKF-QHMQDCFRKYPEH 447 (465)
T ss_dssp TTHHHHHHHHHHHHHCCSSSTTGGGHHHH-HHHHHHHTTCTTT
T ss_pred CchHHHHHHHHhhhcCccccccchHHHHH-HHHHHHHHHCHHH
Confidence 788888888889885 4787664 4578888876443
No 9
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=13.01 E-value=28 Score=20.84 Aligned_cols=28 Identities=4% Similarity=-0.145 Sum_probs=23.2
Q ss_pred CCChhHHhcCCCCCChhhHHHHHHHHHh
Q 035162 26 KRSFRECAGEKSPCIPSECVGLRETYFN 53 (71)
Q Consensus 26 ~~t~~eCL~~~~~~lp~eC~~lr~~f~e 53 (71)
+.||.+.|++...++-..|..+...|-.
T Consensus 62 ~~~p~~al~~a~~~l~~~~~~~~~~f~~ 89 (92)
T 2pa8_L 62 SITPKDALLKAIENIRGMTSHYIDEIKG 89 (92)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998777888999999988853
No 10
>1oig_A Dumpy, CG33196-PB; structural protein; NMR {Drosophila melanogaster} SCOP: g.3.18.1
Probab=12.49 E-value=28 Score=17.00 Aligned_cols=10 Identities=40% Similarity=0.999 Sum_probs=6.9
Q ss_pred HHHhcCcccc
Q 035162 14 KCLSESDCVK 23 (71)
Q Consensus 14 ~Cl~~SdCv~ 23 (71)
+|+.+|||-.
T Consensus 3 EC~~~sdCp~ 12 (26)
T 1oig_A 3 ECVLNSDCPS 12 (26)
T ss_dssp SCCSSTTSST
T ss_pred cccccCcCCc
Confidence 5777888843
Done!