Query 035165
Match_columns 71
No_of_seqs 101 out of 123
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 16:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n6j_G Calcineurin-binding pro 26.2 54 0.0019 17.6 2.4 14 18-31 8-21 (35)
2 1b75_A Protein (50S ribosomal 24.6 9.2 0.00032 23.2 -1.1 11 45-55 23-33 (94)
3 2wsw_A BCCT family betaine/car 24.0 8.9 0.0003 30.4 -1.5 35 37-71 139-183 (509)
4 4fle_A Esterase; structural ge 20.1 19 0.00065 21.8 -0.3 13 48-60 2-15 (202)
5 3zwl_E Eukaryotic translation 16.4 88 0.003 17.6 2.0 17 22-38 15-31 (50)
6 1tqe_X Histone deacetylase 9; 13.7 1.1E+02 0.0039 15.5 1.8 17 15-31 3-19 (26)
7 3n7l_A Neurotoxin; HCR/D-SA, g 11.8 36 0.0012 27.0 -0.8 13 37-49 409-421 (424)
8 1h3f_A Tyrosyl-tRNA synthetase 11.2 25 0.00085 26.8 -1.8 20 49-68 37-57 (432)
9 1sz9_A PCF11 protein; RNA poly 11.0 1.6E+02 0.0055 18.8 2.3 18 20-37 98-115 (144)
10 3q46_A TT-ippase; inorganic py 10.8 60 0.0021 22.3 0.2 9 42-50 53-61 (178)
No 1
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=26.22 E-value=54 Score=17.63 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=11.5
Q ss_pred cCcHHHHHHHHHHh
Q 035165 18 KDSEKSRADCLKEW 31 (71)
Q Consensus 18 ~~se~sk~R~~k~~ 31 (71)
..|||+|+|+-.++
T Consensus 8 siseetkqklk~~i 21 (35)
T 1n6j_G 8 SISEETKQKLKSAI 21 (35)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 36799999998776
No 2
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=24.55 E-value=9.2 Score=23.24 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=8.7
Q ss_pred eehhhhhhhhc
Q 035165 45 YGFIPLVIIIG 55 (71)
Q Consensus 45 yGfIPlVIylG 55 (71)
=|+||.|||=+
T Consensus 23 ~G~vPaVvYG~ 33 (94)
T 1b75_A 23 ANKFPAIIYGG 33 (94)
T ss_dssp TTBCCEEEECS
T ss_pred CCCceEEEECC
Confidence 38999999943
No 3
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=24.04 E-value=8.9 Score=30.36 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=22.7
Q ss_pred hheeeeeEeehhhhhhh---------hcc-cCCCcccccccccCC
Q 035165 37 KKAKVITHYGFIPLVII---------IGM-NSDPKPQLHQLLSPV 71 (71)
Q Consensus 37 ~~~k~v~HyGfIPlVIy---------lG~-~s~PkPsl~~LLsPl 71 (71)
..+.+.+|||+.|--+| .-+ |-..+.++-+.|.|+
T Consensus 139 Am~~tffHWG~~~WaiYal~~lalayf~y~r~~~pl~iss~l~Pl 183 (509)
T 2wsw_A 139 GLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPL 183 (509)
T ss_dssp HHHHHHHHTSHHHHHTTHHHHHHHHHHHHTSCCCCCSGGGGCHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHcCCCCcchHHHhHhh
Confidence 34557899999996664 345 444556666666663
No 4
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=20.14 E-value=19 Score=21.79 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=8.4
Q ss_pred hhhhhhh-cccCCC
Q 035165 48 IPLVIII-GMNSDP 60 (71)
Q Consensus 48 IPlVIyl-G~~s~P 60 (71)
.|.|||| ||+|++
T Consensus 2 mptIl~lHGf~ss~ 15 (202)
T 4fle_A 2 MSTLLYIHGFNSSP 15 (202)
T ss_dssp -CEEEEECCTTCCT
T ss_pred CcEEEEeCCCCCCC
Confidence 4677776 787665
No 5
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=16.38 E-value=88 Score=17.64 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhhhhhh
Q 035165 22 KSRADCLKEWSTWAMKK 38 (71)
Q Consensus 22 ~sk~R~~k~~~~w~~~~ 38 (71)
+.+.|+.++|..|..+.
T Consensus 15 e~RRrlLeEW~awRa~~ 31 (50)
T 3zwl_E 15 LHQRELLKQWTEYREKI 31 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77899999999998754
No 6
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=13.69 E-value=1.1e+02 Score=15.47 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=12.4
Q ss_pred CCCcCcHHHHHHHHHHh
Q 035165 15 KGAKDSEKSRADCLKEW 31 (71)
Q Consensus 15 ~~~~~se~sk~R~~k~~ 31 (71)
.++-.|.|.|+|++..+
T Consensus 3 ~sA~ASteVKqkLqefl 19 (26)
T 1tqe_X 3 KGTGASTEVKQKLQEFL 19 (26)
T ss_dssp CCSCSCSSHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 34456789999998765
No 7
>3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium botulinum} PDB: 3azw_A 3azv_A 3n7m_A 4fvv_A* 3n7k_A 3r4s_A* 3r4u_A
Probab=11.80 E-value=36 Score=27.00 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=10.0
Q ss_pred hheeeeeEeehhh
Q 035165 37 KKAKVITHYGFIP 49 (71)
Q Consensus 37 ~~~k~v~HyGfIP 49 (71)
++.-|..||+|||
T Consensus 409 ~L~~~~~~W~Fip 421 (424)
T 3n7l_A 409 LLESTSTHWVFVP 421 (424)
T ss_dssp GGGCGGGCEEEEE
T ss_pred hhcccccceEEee
Confidence 4455678999999
No 8
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=11.25 E-value=25 Score=26.83 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=15.3
Q ss_pred hhhhhhccc-CCCcccccccc
Q 035165 49 PLVIIIGMN-SDPKPQLHQLL 68 (71)
Q Consensus 49 PlVIylG~~-s~PkPsl~~LL 68 (71)
|+.+|.||. |.+.+.|-+++
T Consensus 37 ~~~vy~G~dPTg~sLHlGh~v 57 (432)
T 1h3f_A 37 PLTVKLGADPTRPDLHLGHAV 57 (432)
T ss_dssp CCEEEEEECTTCCSCBHHHHH
T ss_pred CcEEEEcccCCCCCCchhhHH
Confidence 778899996 55678877766
No 9
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=10.99 E-value=1.6e+02 Score=18.82 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHhhhhhhh
Q 035165 20 SEKSRADCLKEWSTWAMK 37 (71)
Q Consensus 20 se~sk~R~~k~~~~w~~~ 37 (71)
.++.|.++.+++.||.-.
T Consensus 98 d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 98 DNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp CHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHhCc
Confidence 478999999999999755
No 10
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=10.78 E-value=60 Score=22.25 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=7.1
Q ss_pred eeEeehhhh
Q 035165 42 ITHYGFIPL 50 (71)
Q Consensus 42 v~HyGfIPl 50 (71)
-+-|||||=
T Consensus 53 P~NYGfIP~ 61 (178)
T 3q46_A 53 PVDYGIIPQ 61 (178)
T ss_dssp SSEEEECTT
T ss_pred CcccccCCC
Confidence 367999994
Done!