Query 035166
Match_columns 71
No_of_seqs 100 out of 144
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 09:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4117 Heat shock factor bind 100.0 1.1E-31 2.3E-36 170.4 7.2 56 1-56 17-72 (73)
2 PF06825 HSBP1: Heat shock fac 100.0 2.3E-30 5E-35 156.1 4.3 51 1-51 4-54 (54)
3 PF10393 Matrilin_ccoil: Trime 94.6 0.14 3E-06 30.1 4.9 24 18-41 23-46 (47)
4 COG3937 Uncharacterized conser 94.3 0.25 5.5E-06 33.7 6.4 46 2-47 45-105 (108)
5 PF06705 SF-assemblin: SF-asse 92.1 0.86 1.9E-05 32.8 6.7 44 4-47 71-114 (247)
6 TIGR01834 PHA_synth_III_E poly 91.4 0.93 2E-05 35.4 6.6 43 7-49 263-313 (320)
7 PF01601 Corona_S2: Coronaviru 90.9 0.33 7.1E-06 41.0 3.9 34 3-40 287-320 (610)
8 TIGR01837 PHA_granule_1 poly(h 90.2 1.8 4E-05 28.7 6.4 19 27-45 98-116 (118)
9 PRK13182 racA polar chromosome 88.9 4.1 8.9E-05 29.0 7.7 45 7-52 99-151 (175)
10 PF14261 DUF4351: Domain of un 88.5 0.56 1.2E-05 28.1 2.6 39 5-45 9-47 (59)
11 PF05377 FlaC_arch: Flagella a 88.4 2 4.4E-05 26.1 5.1 37 10-46 3-42 (55)
12 PF07304 SRA1: Steroid recepto 88.2 1.1 2.4E-05 31.0 4.4 39 5-43 44-83 (157)
13 PF01519 DUF16: Protein of unk 87.5 1.2 2.6E-05 30.1 4.0 21 18-38 81-101 (102)
14 PF05597 Phasin: Poly(hydroxya 87.4 3.1 6.7E-05 28.6 6.1 20 27-46 111-130 (132)
15 PF15070 GOLGA2L5: Putative go 87.3 2.6 5.6E-05 35.2 6.7 46 11-56 26-74 (617)
16 PF10046 BLOC1_2: Biogenesis o 86.7 4 8.8E-05 26.1 6.1 38 6-44 48-85 (99)
17 PF10779 XhlA: Haemolysin XhlA 86.7 1.8 3.9E-05 26.2 4.2 31 10-44 2-32 (71)
18 PRK13729 conjugal transfer pil 84.7 9.9 0.00021 31.4 8.7 43 6-48 75-120 (475)
19 PF04513 Baculo_PEP_C: Baculov 83.5 8.9 0.00019 27.0 7.0 45 3-47 34-78 (140)
20 PF07889 DUF1664: Protein of u 83.4 8.3 0.00018 26.5 6.7 43 2-44 42-87 (126)
21 PF09712 PHA_synth_III_E: Poly 81.6 5.6 0.00012 30.1 5.8 37 9-45 248-292 (293)
22 PF13747 DUF4164: Domain of un 81.5 7.8 0.00017 24.7 5.7 42 3-45 4-45 (89)
23 PF10158 LOH1CR12: Tumour supp 80.8 11 0.00024 25.8 6.6 34 13-47 76-109 (131)
24 PF04508 Pox_A_type_inc: Viral 80.4 2.4 5.1E-05 21.9 2.4 19 27-45 3-21 (23)
25 PF06825 HSBP1: Heat shock fac 80.4 6.6 0.00014 23.6 4.8 39 8-46 4-42 (54)
26 PF10158 LOH1CR12: Tumour supp 80.3 14 0.00029 25.3 6.9 46 4-49 28-73 (131)
27 PF06705 SF-assemblin: SF-asse 78.4 8.3 0.00018 27.7 5.6 42 5-49 68-109 (247)
28 PF02994 Transposase_22: L1 tr 77.1 2.8 6.1E-05 32.4 3.1 24 22-45 141-164 (370)
29 PF09903 DUF2130: Uncharacteri 76.5 14 0.00031 27.7 6.6 40 6-45 197-236 (267)
30 PF04344 CheZ: Chemotaxis phos 75.0 2 4.3E-05 31.0 1.7 38 16-56 129-166 (214)
31 KOG0810 SNARE protein Syntaxin 73.6 6.6 0.00014 30.2 4.3 11 34-44 208-218 (297)
32 KOG0804 Cytoplasmic Zn-finger 73.4 14 0.0003 30.9 6.3 44 3-46 378-449 (493)
33 KOG4117 Heat shock factor bind 72.7 12 0.00026 24.1 4.6 17 28-44 37-53 (73)
34 PF12841 YvrJ: YvrJ protein fa 72.7 4.5 9.9E-05 22.7 2.4 17 30-46 20-36 (38)
35 PRK06771 hypothetical protein; 70.8 12 0.00026 24.9 4.5 26 30-55 28-53 (93)
36 PF03670 UPF0184: Uncharacteri 69.7 10 0.00022 24.8 3.9 29 18-46 33-61 (83)
37 PRK04406 hypothetical protein; 69.4 4.9 0.00011 25.1 2.3 15 34-48 41-55 (75)
38 PF00103 Hormone_1: Somatotrop 68.9 5.4 0.00012 28.5 2.7 33 18-50 120-152 (214)
39 PRK00965 tetrahydromethanopter 68.4 7.6 0.00017 25.9 3.2 31 27-57 33-63 (96)
40 PF05440 MtrB: Tetrahydrometha 67.8 8.6 0.00019 25.7 3.3 32 27-58 32-63 (97)
41 PF03500 Cellsynth_D: Cellulos 67.1 36 0.00077 24.1 6.5 45 2-49 2-59 (144)
42 PHA03332 membrane glycoprotein 67.0 16 0.00034 33.7 5.7 38 9-46 914-951 (1328)
43 PF04513 Baculo_PEP_C: Baculov 66.9 39 0.00084 23.8 6.6 43 5-47 54-100 (140)
44 PF13887 MRF_C1: Myelin gene r 66.1 4.3 9.4E-05 23.0 1.4 12 28-39 24-35 (36)
45 COG5570 Uncharacterized small 66.1 8 0.00017 23.9 2.7 30 23-52 3-32 (57)
46 PF07889 DUF1664: Protein of u 66.0 40 0.00087 23.1 6.5 42 6-47 42-83 (126)
47 PF04546 Sigma70_ner: Sigma-70 65.9 6.2 0.00013 27.8 2.5 47 5-51 108-161 (211)
48 PF15136 UPF0449: Uncharacteri 65.5 15 0.00033 24.5 4.2 32 12-43 65-96 (97)
49 PRK11166 chemotaxis regulator 65.4 25 0.00054 26.1 5.7 34 15-51 140-173 (214)
50 TIGR02135 phoU_full phosphate 64.9 26 0.00055 22.9 5.2 43 4-46 124-166 (212)
51 TIGR03017 EpsF chain length de 64.8 58 0.0013 24.6 7.7 41 14-54 167-207 (444)
52 cd00632 Prefoldin_beta Prefold 64.7 33 0.00071 21.7 6.2 20 25-44 70-89 (105)
53 PF02646 RmuC: RmuC family; I 64.4 31 0.00068 25.8 6.1 40 5-48 238-277 (304)
54 PF06008 Laminin_I: Laminin Do 63.8 46 0.001 24.0 6.7 43 4-46 157-206 (264)
55 PRK11546 zraP zinc resistance 63.3 50 0.0011 23.2 7.1 44 5-48 52-105 (143)
56 PF05531 NPV_P10: Nucleopolyhe 63.3 25 0.00054 22.5 4.7 30 22-51 39-68 (75)
57 PRK00286 xseA exodeoxyribonucl 62.6 43 0.00093 25.8 6.7 41 5-45 325-370 (438)
58 cd00890 Prefoldin Prefoldin is 62.2 30 0.00065 21.6 4.9 24 23-46 92-115 (129)
59 COG3143 CheZ Chemotaxis protei 61.8 29 0.00063 26.2 5.5 33 12-47 140-172 (217)
60 PF04799 Fzo_mitofusin: fzo-li 61.7 22 0.00048 25.7 4.8 37 7-43 102-138 (171)
61 cd00632 Prefoldin_beta Prefold 61.3 29 0.00062 21.9 4.8 44 4-47 56-99 (105)
62 PRK10884 SH3 domain-containing 61.2 50 0.0011 24.0 6.5 40 7-46 100-139 (206)
63 PF04102 SlyX: SlyX; InterPro 60.7 35 0.00075 20.5 5.6 22 29-50 29-50 (69)
64 PF10975 DUF2802: Protein of u 60.4 11 0.00023 23.3 2.5 19 30-48 3-21 (70)
65 PRK03100 sec-independent trans 58.3 57 0.0012 22.7 6.2 37 9-45 33-70 (136)
66 PF02524 KID: KID repeat; Int 58.3 3.2 6.9E-05 18.3 -0.0 10 33-42 1-10 (11)
67 PRK14127 cell division protein 58.2 54 0.0012 22.0 7.5 43 4-50 27-69 (109)
68 PRK11519 tyrosine kinase; Prov 57.6 61 0.0013 26.9 7.2 49 4-52 253-301 (719)
69 PRK00846 hypothetical protein; 57.5 13 0.00028 23.7 2.7 15 34-48 43-57 (77)
70 PF12896 Apc4: Anaphase-promot 57.0 59 0.0013 22.2 6.1 42 3-44 27-68 (210)
71 PF12462 Helicase_IV_N: DNA he 57.0 46 0.001 23.0 5.6 37 3-39 80-116 (166)
72 TIGR01005 eps_transp_fam exopo 56.9 67 0.0014 26.4 7.2 50 4-53 180-229 (754)
73 PF07439 DUF1515: Protein of u 56.3 21 0.00045 24.6 3.7 26 22-47 37-62 (112)
74 PF02185 HR1: Hr1 repeat; Int 56.1 19 0.0004 21.3 3.1 33 19-51 34-66 (70)
75 PF10805 DUF2730: Protein of u 55.3 51 0.0011 21.3 5.2 20 25-44 72-91 (106)
76 TIGR02976 phageshock_pspB phag 55.2 21 0.00045 22.5 3.3 24 19-42 43-66 (75)
77 TIGR02338 gimC_beta prefoldin, 55.2 53 0.0011 21.0 6.1 21 24-44 73-93 (110)
78 TIGR02338 gimC_beta prefoldin, 54.5 43 0.00093 21.4 4.8 42 5-46 65-109 (110)
79 COG0783 Dps DNA-binding ferrit 53.8 28 0.00061 24.4 4.1 48 9-56 46-97 (156)
80 TIGR02135 phoU_full phosphate 53.6 60 0.0013 21.2 5.6 41 4-44 20-60 (212)
81 KOG2802 Membrane protein HUEL 53.5 36 0.00077 28.5 5.2 21 25-45 472-492 (503)
82 TIGR03007 pepcterm_ChnLen poly 53.4 50 0.0011 25.5 5.7 39 15-53 158-196 (498)
83 PRK09841 cryptic autophosphory 51.5 91 0.002 26.0 7.3 50 4-53 249-302 (726)
84 PF00170 bZIP_1: bZIP transcri 50.9 47 0.001 19.2 6.0 37 7-47 26-62 (64)
85 COG5460 Uncharacterized conser 50.4 16 0.00034 24.0 2.2 22 20-41 59-80 (82)
86 PF04380 BMFP: Membrane fusoge 50.2 60 0.0013 20.1 5.7 18 28-45 60-77 (79)
87 PF08826 DMPK_coil: DMPK coile 49.6 58 0.0013 19.8 6.6 40 8-48 16-55 (61)
88 KOG4559 Uncharacterized conser 49.4 55 0.0012 22.7 4.9 35 9-44 81-115 (120)
89 PRK11115 transcriptional regul 49.2 70 0.0015 22.0 5.5 45 4-48 31-75 (236)
90 PF03980 Nnf1: Nnf1 ; InterPr 49.1 66 0.0014 20.3 7.7 43 5-47 4-49 (109)
91 PF00210 Ferritin: Ferritin-li 49.1 35 0.00076 20.7 3.6 30 10-39 31-60 (142)
92 PF10152 DUF2360: Predicted co 48.8 72 0.0016 21.8 5.4 23 22-44 18-40 (148)
93 PF15134 DUF4570: Domain of un 48.6 63 0.0014 22.0 5.0 37 6-42 23-69 (109)
94 PF00509 Hemagglutinin: Haemag 48.5 13 0.00028 31.4 2.0 42 5-46 369-417 (550)
95 PF00517 GP41: Retroviral enve 48.2 87 0.0019 22.4 6.0 38 9-46 30-67 (204)
96 PF05565 Sipho_Gp157: Siphovir 47.9 89 0.0019 21.4 7.3 53 4-56 26-99 (162)
97 PF08946 Osmo_CC: Osmosensory 47.5 46 0.00099 19.8 3.7 27 21-47 15-41 (46)
98 PF06875 PRF: Plethodontid rec 47.3 59 0.0013 24.5 5.1 34 22-55 131-164 (214)
99 COG4582 Uncharacterized protei 46.3 1.3E+02 0.0027 23.3 6.8 49 5-53 18-80 (244)
100 cd01043 DPS DPS protein, ferri 46.2 47 0.001 21.2 4.0 44 9-52 29-76 (139)
101 PF05531 NPV_P10: Nucleopolyhe 46.1 77 0.0017 20.2 5.0 21 27-47 37-57 (75)
102 PHA03385 IX capsid protein IX, 45.9 34 0.00074 24.3 3.5 28 21-48 103-130 (135)
103 PF09177 Syntaxin-6_N: Syntaxi 45.9 73 0.0016 19.8 6.1 23 20-42 41-63 (97)
104 PF06120 Phage_HK97_TLTM: Tail 45.0 62 0.0013 25.1 5.1 41 8-48 56-104 (301)
105 PRK09458 pspB phage shock prot 44.7 42 0.0009 21.5 3.5 21 21-41 45-65 (75)
106 KOG4460 Nuclear pore complex, 44.3 83 0.0018 27.5 6.1 44 15-58 613-656 (741)
107 PF01895 PhoU: PhoU domain; I 44.1 58 0.0013 18.2 5.5 42 3-44 6-47 (88)
108 PRK13729 conjugal transfer pil 44.1 30 0.00064 28.7 3.4 27 18-44 97-123 (475)
109 PF06667 PspB: Phage shock pro 43.6 45 0.00097 21.1 3.5 21 21-41 45-65 (75)
110 PF06103 DUF948: Bacterial pro 43.6 74 0.0016 19.3 5.0 19 27-45 35-53 (90)
111 PF15027 DUF4525: Domain of un 43.5 70 0.0015 22.8 4.8 29 18-46 79-107 (138)
112 PRK06665 flgK flagellar hook-a 43.4 90 0.0019 25.9 6.1 43 8-50 154-196 (627)
113 PF08653 DASH_Dam1: DASH compl 43.1 41 0.00089 20.4 3.1 12 13-24 4-15 (58)
114 COG4062 MtrB Tetrahydromethano 43.0 40 0.00087 23.1 3.4 32 25-56 31-62 (108)
115 PHA03395 p10 fibrous body prot 42.9 96 0.0021 20.4 6.7 58 6-64 24-81 (87)
116 cd00890 Prefoldin Prefoldin is 42.7 60 0.0013 20.2 4.0 40 9-48 85-124 (129)
117 PF12296 HsbA: Hydrophobic sur 42.2 67 0.0015 20.0 4.2 19 20-38 100-118 (124)
118 PF02994 Transposase_22: L1 tr 42.2 19 0.00042 27.9 2.0 14 32-45 172-185 (370)
119 TIGR00237 xseA exodeoxyribonuc 42.1 1.2E+02 0.0027 23.8 6.4 39 5-43 275-318 (432)
120 PF05164 ZapA: Cell division p 42.0 73 0.0016 18.7 4.3 10 12-21 64-73 (89)
121 PF05546 She9_MDM33: She9 / Md 41.9 1.5E+02 0.0032 22.2 7.0 44 4-47 6-54 (207)
122 smart00338 BRLZ basic region l 41.7 70 0.0015 18.4 5.4 36 8-47 27-62 (65)
123 PF10280 Med11: Mediator compl 41.7 26 0.00056 23.0 2.3 18 33-50 7-24 (117)
124 cd01052 DPSL DPS-like protein, 41.6 69 0.0015 20.3 4.2 30 9-38 37-66 (148)
125 PRK09448 DNA starvation/statio 41.6 55 0.0012 22.5 4.0 44 9-52 53-100 (162)
126 PF03670 UPF0184: Uncharacteri 41.1 1E+02 0.0022 20.1 4.9 28 21-48 29-56 (83)
127 PF10267 Tmemb_cc2: Predicted 40.8 1.3E+02 0.0029 24.2 6.5 39 8-46 234-272 (395)
128 PF05791 Bacillus_HBL: Bacillu 40.5 1.2E+02 0.0026 21.2 5.6 35 13-47 144-178 (184)
129 PF09580 Spore_YhcN_YlaJ: Spor 40.4 61 0.0013 21.7 4.0 29 21-49 142-176 (177)
130 PF05537 DUF759: Borrelia burg 40.1 75 0.0016 26.3 5.1 32 34-66 398-429 (431)
131 PF05873 Mt_ATP-synt_D: ATP sy 39.2 45 0.00098 23.2 3.3 46 6-51 84-129 (161)
132 COG0598 CorA Mg2+ and Co2+ tra 38.9 54 0.0012 24.4 3.8 22 5-26 141-162 (322)
133 COG3206 GumC Uncharacterized p 38.6 1.8E+02 0.0039 22.6 6.7 51 3-53 180-230 (458)
134 PF06013 WXG100: Proteins of 1 38.4 72 0.0016 17.6 5.6 13 23-35 63-75 (86)
135 PF10046 BLOC1_2: Biogenesis o 38.4 1E+02 0.0023 19.5 6.6 29 18-46 28-56 (99)
136 PF07586 HXXSHH: Protein of un 38.4 1.6E+02 0.0035 21.7 6.4 47 4-50 163-209 (302)
137 PRK00286 xseA exodeoxyribonucl 38.3 1.7E+02 0.0036 22.6 6.5 16 27-42 307-322 (438)
138 COG3159 Uncharacterized protei 38.2 29 0.00062 26.2 2.3 24 27-50 47-70 (218)
139 PF13864 Enkurin: Calmodulin-b 37.9 1E+02 0.0022 19.3 5.9 20 25-44 74-93 (98)
140 PF00957 Synaptobrevin: Synapt 37.8 93 0.002 18.8 6.6 31 18-49 18-48 (89)
141 KOG3313 Molecular chaperone Pr 37.8 1E+02 0.0022 22.9 5.1 30 13-42 46-75 (187)
142 TIGR02492 flgK_ends flagellar 37.4 1.5E+02 0.0033 22.1 6.0 42 9-50 143-184 (322)
143 PF04102 SlyX: SlyX; InterPro 37.3 93 0.002 18.6 6.8 34 17-50 21-57 (69)
144 PF02601 Exonuc_VII_L: Exonucl 37.2 1.7E+02 0.0036 21.5 6.4 18 26-43 192-209 (319)
145 PF15249 GLTSCR1: Glioma tumor 37.1 71 0.0015 20.6 3.8 26 12-37 53-78 (109)
146 PF03105 SPX: SPX domain; Int 36.9 1.3E+02 0.0029 20.3 6.1 42 8-49 96-137 (275)
147 PRK05563 DNA polymerase III su 36.7 43 0.00093 27.3 3.2 22 26-47 370-391 (559)
148 COG4467 Regulator of replicati 36.4 70 0.0015 22.1 3.8 28 22-49 5-32 (114)
149 PF06008 Laminin_I: Laminin Do 36.2 1.3E+02 0.0029 21.6 5.4 34 17-50 79-112 (264)
150 cd00584 Prefoldin_alpha Prefol 36.1 1.2E+02 0.0025 19.4 5.6 38 6-47 5-42 (129)
151 KOG2336 Molybdopterin biosynth 36.0 66 0.0014 26.2 4.1 28 27-54 5-32 (422)
152 PF15469 Sec5: Exocyst complex 35.9 1.4E+02 0.003 20.2 5.8 48 4-52 125-172 (182)
153 PF01920 Prefoldin_2: Prefoldi 35.9 1E+02 0.0022 18.6 4.9 19 26-44 77-95 (106)
154 PRK05683 flgK flagellar hook-a 35.9 1.3E+02 0.0029 25.4 6.1 41 9-49 143-183 (676)
155 PF04728 LPP: Lipoprotein leuc 35.8 1E+02 0.0022 18.7 4.3 16 30-45 15-30 (56)
156 PRK15374 pathogenicity island 35.3 1.8E+02 0.0039 25.1 6.7 34 24-57 147-180 (593)
157 PF06698 DUF1192: Protein of u 35.3 63 0.0014 19.6 3.1 21 27-47 23-43 (59)
158 PRK07521 flgK flagellar hook-a 35.2 1.5E+02 0.0033 23.5 6.0 42 9-50 138-179 (483)
159 PRK00182 tatB sec-independent 35.2 1.5E+02 0.0033 21.3 5.5 36 9-44 33-69 (160)
160 PF09277 Erythro-docking: Eryt 35.0 24 0.00051 21.9 1.2 20 30-49 8-27 (58)
161 PHA02100 hypothetical protein 34.9 50 0.0011 22.6 2.9 35 13-52 17-53 (112)
162 cd01040 globin Globins are hem 34.7 83 0.0018 19.1 3.7 36 15-51 56-91 (140)
163 cd00082 HisKA Histidine Kinase 34.6 64 0.0014 16.0 4.9 21 25-45 41-61 (65)
164 PF05929 Phage_GPO: Phage caps 34.6 2.1E+02 0.0046 22.0 7.7 40 15-54 218-257 (276)
165 PF11172 DUF2959: Protein of u 34.6 1.4E+02 0.003 22.3 5.3 36 9-44 165-200 (201)
166 KOG2196 Nuclear porin [Nuclear 34.3 1.4E+02 0.0031 23.1 5.5 25 19-43 179-203 (254)
167 PRK09546 zntB zinc transporter 34.1 76 0.0016 23.4 3.9 23 5-27 144-166 (324)
168 PF07400 IL11: Interleukin 11; 34.0 1.2E+02 0.0025 22.8 4.9 36 25-60 124-161 (199)
169 PF01420 Methylase_S: Type I r 33.9 1.1E+02 0.0024 18.7 4.2 25 21-46 142-166 (167)
170 PRK08471 flgK flagellar hook-a 33.8 2E+02 0.0044 23.9 6.7 42 9-50 148-189 (613)
171 PRK12714 flgK flagellar hook-a 33.6 1.6E+02 0.0034 24.5 6.1 42 9-50 143-184 (624)
172 PF07195 FliD_C: Flagellar hoo 33.6 79 0.0017 22.5 3.9 19 25-43 193-211 (239)
173 PRK10626 hypothetical protein; 32.6 2.1E+02 0.0046 21.7 6.2 37 10-46 200-236 (239)
174 PF12792 CSS-motif: CSS motif 32.4 1.4E+02 0.0031 19.3 4.6 22 11-32 2-23 (208)
175 PF01402 RHH_1: Ribbon-helix-h 32.3 22 0.00048 18.3 0.7 27 19-48 6-32 (39)
176 PF04912 Dynamitin: Dynamitin 32.2 95 0.002 23.9 4.3 22 20-41 338-359 (388)
177 COG4839 FtsL Protein required 32.1 1.8E+02 0.0038 20.2 5.3 24 23-46 72-95 (120)
178 COG4575 ElaB Uncharacterized c 31.5 1.6E+02 0.0034 20.0 4.8 33 5-37 46-78 (104)
179 PHA02604 rI.-1 hypothetical pr 31.4 1.8E+02 0.004 20.3 5.3 34 2-35 84-117 (126)
180 COG1322 Predicted nuclease of 31.4 1.2E+02 0.0025 24.8 4.9 39 5-43 111-150 (448)
181 KOG1760 Molecular chaperone Pr 31.0 1.9E+02 0.0042 20.4 5.8 33 7-39 84-116 (131)
182 PF02865 STAT_int: STAT protei 30.9 1.3E+02 0.0028 20.2 4.4 26 2-27 57-84 (124)
183 PF04568 IATP: Mitochondrial A 30.8 1.6E+02 0.0035 19.4 4.8 29 14-42 72-100 (100)
184 PF05121 GvpK: Gas vesicle pro 30.7 1.6E+02 0.0035 19.4 4.7 36 18-53 28-73 (88)
185 PF11945 WASH_WAHD: WAHD domai 30.7 1.9E+02 0.004 22.3 5.7 22 25-46 50-71 (297)
186 PRK05658 RNA polymerase sigma 30.7 2.8E+02 0.006 22.8 7.0 46 6-51 253-304 (619)
187 PF05008 V-SNARE: Vesicle tran 30.3 1.2E+02 0.0026 17.7 4.7 34 7-40 39-76 (79)
188 TIGR03185 DNA_S_dndD DNA sulfu 30.1 1.5E+02 0.0033 24.2 5.4 21 21-41 394-414 (650)
189 COG3416 Uncharacterized protei 30.0 1.5E+02 0.0033 22.7 5.0 21 27-47 57-77 (233)
190 KOG1106 Uncharacterized conser 29.9 1.7E+02 0.0036 21.5 5.1 35 8-42 122-160 (177)
191 KOG1656 Protein involved in gl 29.8 2.5E+02 0.0055 21.4 8.4 17 28-44 160-176 (221)
192 smart00709 Zpr1 Duplicated dom 29.5 1.3E+02 0.0028 21.0 4.3 41 5-45 98-139 (160)
193 KOG4302 Microtubule-associated 29.3 1.9E+02 0.0041 25.0 6.0 42 8-53 161-202 (660)
194 PRK06945 flgK flagellar hook-a 29.3 2E+02 0.0044 24.2 6.1 42 9-50 144-185 (651)
195 PF05842 Euplotes_phero: Euplo 29.3 50 0.0011 23.4 2.2 18 1-18 3-21 (134)
196 PRK08147 flgK flagellar hook-a 29.2 2.2E+02 0.0048 22.9 6.1 42 9-50 144-185 (547)
197 KOG4057 Uncharacterized conser 29.1 48 0.001 24.4 2.1 16 34-49 14-29 (180)
198 PF04899 MbeD_MobD: MbeD/MobD 29.0 1.5E+02 0.0032 18.4 5.8 35 9-43 30-67 (70)
199 PF07047 OPA3: Optic atrophy 3 28.9 87 0.0019 21.0 3.3 22 26-47 106-127 (134)
200 PF04582 Reo_sigmaC: Reovirus 28.7 1.6E+02 0.0034 23.4 5.1 42 5-46 110-154 (326)
201 PF09304 Cortex-I_coil: Cortex 28.7 1.9E+02 0.0042 19.6 5.6 22 22-43 55-76 (107)
202 cd05511 Bromo_TFIID Bromodomai 28.7 79 0.0017 20.4 2.9 23 20-42 90-112 (112)
203 cd07666 BAR_SNX7 The Bin/Amphi 28.7 1.2E+02 0.0026 22.7 4.3 38 7-44 30-73 (243)
204 PF11464 Rbsn: Rabenosyn Rab b 28.5 67 0.0015 18.5 2.3 19 25-47 19-37 (42)
205 PRK08871 flgK flagellar hook-a 28.4 2.2E+02 0.0047 24.0 6.1 41 9-49 146-186 (626)
206 KOG3681 Alpha-catenin [Extrace 28.3 1.5E+02 0.0033 26.5 5.3 44 4-47 326-371 (835)
207 PF15145 DUF4577: Domain of un 28.1 32 0.00069 24.2 1.0 20 25-44 90-109 (128)
208 PF04977 DivIC: Septum formati 28.1 74 0.0016 18.2 2.5 22 23-44 29-50 (80)
209 PRK06285 chorismate mutase; Pr 28.0 97 0.0021 19.4 3.2 25 23-47 5-29 (96)
210 PF09731 Mitofilin: Mitochondr 28.0 3.1E+02 0.0068 21.9 6.8 23 24-46 377-399 (582)
211 PHA00442 host recBCD nuclease 27.9 91 0.002 19.3 2.9 26 27-52 15-42 (59)
212 TIGR00237 xseA exodeoxyribonuc 27.9 3E+02 0.0066 21.7 6.7 16 27-42 347-362 (432)
213 cd00907 Bacterioferritin Bacte 27.9 1.5E+02 0.0032 18.9 4.1 26 11-36 38-63 (153)
214 KOG3614 Ca2+/Mg2+-permeable ca 27.8 1.9E+02 0.0041 27.4 6.0 44 3-46 1122-1176(1381)
215 TIGR01834 PHA_synth_III_E poly 27.7 94 0.002 24.5 3.7 27 21-47 292-318 (320)
216 TIGR00414 serS seryl-tRNA synt 27.6 3.1E+02 0.0066 21.6 8.4 53 9-61 46-117 (418)
217 COG0013 AlaS Alanyl-tRNA synth 27.6 1.3E+02 0.0029 26.8 4.9 40 6-46 714-753 (879)
218 TIGR01803 CM-like chorismate m 27.5 72 0.0016 19.4 2.5 20 28-47 2-21 (82)
219 PF14931 IFT20: Intraflagellar 27.2 1.1E+02 0.0023 20.7 3.5 22 15-36 38-59 (120)
220 PRK00892 lpxD UDP-3-O-[3-hydro 27.2 46 0.001 24.9 1.9 20 22-41 321-340 (343)
221 PF14071 YlbD_coat: Putative c 27.2 73 0.0016 22.1 2.7 26 28-53 80-108 (124)
222 PF07131 DUF1382: Protein of u 27.1 97 0.0021 19.3 3.0 21 13-33 34-54 (61)
223 cd04779 HTH_MerR-like_sg4 Heli 27.0 2E+02 0.0043 19.3 5.1 23 22-44 78-100 (134)
224 PRK07737 fliD flagellar cappin 27.0 2.2E+02 0.0047 23.0 5.7 21 24-44 447-467 (501)
225 PF07558 Shugoshin_N: Shugoshi 27.0 39 0.00085 19.2 1.1 19 29-47 18-36 (46)
226 PF05816 TelA: Toxic anion res 26.9 2.8E+02 0.006 21.0 6.0 33 7-39 84-116 (333)
227 PF05250 UPF0193: Uncharacteri 26.9 1.1E+02 0.0024 22.7 3.8 12 28-39 185-196 (212)
228 KOG0933 Structural maintenance 26.9 1E+02 0.0022 28.5 4.1 38 7-47 965-1002(1174)
229 PRK15364 pathogenicity island 26.8 2.4E+02 0.0052 21.1 5.5 35 7-41 51-88 (196)
230 PF11074 DUF2779: Domain of un 26.5 2.1E+02 0.0044 19.3 6.3 37 3-45 59-105 (130)
231 PF03357 Snf7: Snf7; InterPro 26.4 54 0.0012 21.2 1.9 25 35-59 140-164 (171)
232 PF04157 EAP30: EAP30/Vps36 fa 26.4 1.4E+02 0.0031 21.1 4.2 42 16-57 38-79 (223)
233 KOG1666 V-SNARE [Intracellular 26.4 2E+02 0.0044 21.8 5.1 50 7-56 3-63 (220)
234 PRK13169 DNA replication intia 26.1 1.6E+02 0.0034 19.8 4.1 10 36-45 26-35 (110)
235 COG4570 Rus Holliday junction 26.0 59 0.0013 22.8 2.1 17 34-50 84-100 (132)
236 PF15397 DUF4618: Domain of un 25.9 3E+02 0.0066 21.0 7.1 23 27-49 202-224 (258)
237 PF05190 MutS_IV: MutS family 25.8 1.3E+02 0.0027 17.4 3.3 23 26-48 5-27 (92)
238 TIGR00293 prefoldin, archaeal 25.7 1.8E+02 0.004 18.4 5.6 29 16-44 11-39 (126)
239 PRK07191 flgK flagellar hook-a 25.6 2.9E+02 0.0063 21.8 6.1 42 9-50 143-184 (456)
240 KOG0796 Spliceosome subunit [R 25.5 2.8E+02 0.0061 22.1 5.9 28 25-52 112-142 (319)
241 PF02845 CUE: CUE domain; Int 25.4 1.1E+02 0.0024 16.3 2.7 39 6-46 2-40 (42)
242 COG3352 FlaC Putative archaeal 25.4 2.2E+02 0.0049 20.6 5.0 39 9-47 46-94 (157)
243 KOG3684 Ca2+-activated K+ chan 25.3 2.2E+02 0.0048 24.0 5.5 24 23-46 439-462 (489)
244 PF12128 DUF3584: Protein of u 25.1 3.5E+02 0.0077 24.1 7.0 48 5-52 723-770 (1201)
245 PRK12715 flgK flagellar hook-a 25.0 2.7E+02 0.0058 23.5 6.1 40 9-48 143-182 (649)
246 PRK02119 hypothetical protein; 25.0 1.5E+02 0.0034 18.1 3.6 23 28-50 33-55 (73)
247 PF00489 IL6: Interleukin-6/G- 24.9 79 0.0017 21.7 2.5 49 5-57 66-114 (154)
248 smart00808 FABD F-actin bindin 24.9 1.1E+02 0.0023 21.4 3.2 15 36-50 86-100 (126)
249 TIGR00383 corA magnesium Mg(2+ 24.6 1E+02 0.0022 22.2 3.2 15 27-41 151-165 (318)
250 COG3599 DivIVA Cell division i 24.6 2.7E+02 0.0059 20.5 5.4 37 4-44 27-63 (212)
251 PRK10947 global DNA-binding tr 24.5 2.4E+02 0.0052 19.4 6.6 17 8-24 25-41 (135)
252 PF02996 Prefoldin: Prefoldin 24.5 1.8E+02 0.004 18.0 5.1 20 25-44 84-103 (120)
253 PHA02557 22 prohead core prote 24.4 3.2E+02 0.007 21.3 6.0 42 6-47 118-163 (271)
254 PHA03332 membrane glycoprotein 24.3 1.5E+02 0.0033 27.7 4.8 41 3-43 926-966 (1328)
255 PRK10803 tol-pal system protei 24.3 2E+02 0.0043 21.2 4.7 35 9-43 56-93 (263)
256 PRK00306 50S ribosomal protein 24.2 1.5E+02 0.0032 17.6 3.4 27 27-53 11-37 (66)
257 PF06937 EURL: EURL protein; 24.2 1.2E+02 0.0025 23.9 3.6 25 2-26 225-249 (285)
258 PRK08027 flgL flagellar hook-a 24.1 2.6E+02 0.0055 21.0 5.3 32 8-39 228-259 (317)
259 PF04344 CheZ: Chemotaxis phos 24.1 2.7E+02 0.0058 20.1 5.3 35 15-49 94-128 (214)
260 PF07384 DUF1497: Protein of u 24.0 97 0.0021 19.1 2.5 20 13-32 35-55 (59)
261 TIGR00012 L29 ribosomal protei 24.0 1.6E+02 0.0034 17.0 3.5 28 27-54 7-34 (55)
262 PF05769 DUF837: Protein of un 24.0 1.6E+02 0.0036 20.9 4.1 20 29-48 14-33 (181)
263 PRK06799 flgK flagellar hook-a 23.8 3.3E+02 0.0071 21.5 6.0 41 9-49 148-188 (431)
264 PF02646 RmuC: RmuC family; I 23.8 3.2E+02 0.0069 20.5 6.0 10 28-37 51-60 (304)
265 KOG0978 E3 ubiquitin ligase in 23.7 2.8E+02 0.0061 24.2 6.0 39 5-43 60-101 (698)
266 PRK07857 hypothetical protein; 23.6 1.3E+02 0.0028 20.1 3.3 23 25-47 28-50 (106)
267 PF06160 EzrA: Septation ring 23.6 2E+02 0.0043 23.5 4.9 37 9-45 138-174 (560)
268 PF08581 Tup_N: Tup N-terminal 23.6 2E+02 0.0043 18.1 6.9 40 5-44 2-58 (79)
269 KOG3650 Predicted coiled-coil 23.6 2.1E+02 0.0046 19.8 4.4 35 25-59 70-118 (120)
270 PRK15347 two component system 23.5 3.4E+02 0.0073 22.1 6.1 33 9-41 352-384 (921)
271 PF04888 SseC: Secretion syste 23.5 3E+02 0.0065 20.1 6.4 39 9-47 256-294 (306)
272 COG4942 Membrane-bound metallo 23.5 4.2E+02 0.0091 21.8 7.0 23 26-48 88-110 (420)
273 PF05010 TACC: Transforming ac 23.5 1.6E+02 0.0036 21.5 4.1 27 23-49 35-61 (207)
274 PRK11107 hybrid sensory histid 23.5 3.3E+02 0.0072 22.0 6.1 31 9-39 233-263 (919)
275 PF03310 Cauli_DNA-bind: Cauli 23.1 2.6E+02 0.0057 19.3 5.4 32 16-47 35-69 (121)
276 TIGR02132 phaR_Bmeg polyhydrox 23.1 3.3E+02 0.0071 20.3 6.7 18 32-49 86-103 (189)
277 PRK10361 DNA recombination pro 23.0 3.9E+02 0.0084 22.2 6.5 22 4-25 103-124 (475)
278 PRK09343 prefoldin subunit bet 22.8 2.3E+02 0.0051 18.6 7.3 45 6-50 70-117 (121)
279 PRK10600 nitrate/nitrite senso 22.8 3E+02 0.0066 21.4 5.6 27 10-36 181-207 (569)
280 PF07195 FliD_C: Flagellar hoo 22.7 2.4E+02 0.0053 20.0 4.8 27 17-43 192-218 (239)
281 PF05565 Sipho_Gp157: Siphovir 22.5 2.6E+02 0.0057 19.1 5.7 37 11-47 26-62 (162)
282 PF03148 Tektin: Tektin family 22.5 2.8E+02 0.006 21.6 5.4 22 24-45 271-292 (384)
283 PRK07075 isochorismate-pyruvat 22.4 1.6E+02 0.0034 18.9 3.5 23 25-47 8-30 (101)
284 PF10224 DUF2205: Predicted co 22.4 2.2E+02 0.0048 18.1 5.5 36 23-58 35-77 (80)
285 smart00546 CUE Domain that may 22.3 96 0.0021 16.5 2.1 39 6-46 3-41 (43)
286 PF13758 Prefoldin_3: Prefoldi 22.2 1.3E+02 0.0029 20.0 3.2 22 27-48 70-91 (99)
287 PRK10361 DNA recombination pro 22.1 3.5E+02 0.0077 22.4 6.1 25 24-48 386-410 (475)
288 PF00617 RasGEF: RasGEF domain 22.1 2.3E+02 0.005 18.4 4.3 35 7-41 44-81 (188)
289 PF06009 Laminin_II: Laminin D 22.0 30 0.00065 23.1 0.0 25 23-47 50-74 (138)
290 PRK00708 sec-independent trans 22.0 3.4E+02 0.0073 20.2 5.5 15 13-27 36-50 (209)
291 cd07626 BAR_SNX9_like The Bin/ 21.9 3.2E+02 0.0069 19.8 6.0 38 9-46 141-179 (199)
292 TIGR01013 2a58 Phosphate:Na+ S 21.7 2.1E+02 0.0045 22.4 4.5 41 4-44 386-426 (456)
293 PF03148 Tektin: Tektin family 21.5 3.9E+02 0.0085 20.7 6.5 44 4-47 230-273 (384)
294 PF10664 NdhM: Cyanobacterial 21.5 2E+02 0.0044 19.7 3.9 40 5-47 40-85 (108)
295 PF05546 She9_MDM33: She9 / Md 21.5 1.4E+02 0.0031 22.3 3.5 27 11-37 2-28 (207)
296 PHA02675 ORF104 fusion protein 21.4 2.6E+02 0.0056 18.6 6.1 37 6-46 36-72 (90)
297 PF11272 DUF3072: Protein of u 21.4 69 0.0015 19.7 1.5 14 28-41 42-55 (57)
298 PF07436 Curto_V3: Curtovirus 21.3 77 0.0017 20.9 1.8 27 20-46 30-56 (87)
299 PF06037 DUF922: Bacterial pro 21.3 1.7E+02 0.0038 20.2 3.7 30 10-39 121-150 (161)
300 cd04789 HTH_Cfa Helix-Turn-Hel 21.3 2.2E+02 0.0048 17.8 4.2 27 22-48 75-101 (102)
301 PHA03030 hypothetical protein; 21.3 2.9E+02 0.0064 19.2 5.3 21 31-51 65-85 (122)
302 cd07623 BAR_SNX1_2 The Bin/Amp 21.2 3.1E+02 0.0068 19.5 6.8 41 6-46 162-203 (224)
303 PHA01750 hypothetical protein 21.1 2.4E+02 0.0053 18.1 6.0 25 23-47 47-71 (75)
304 PF15328 GCOM2: Putative GRINL 21.1 73 0.0016 23.1 1.8 23 21-43 12-34 (223)
305 PF02024 Leptin: Leptin; Inte 20.9 1.5E+02 0.0033 21.2 3.4 25 9-33 3-27 (146)
306 COG1730 GIM5 Predicted prefold 20.8 2.9E+02 0.0062 19.3 4.7 20 26-45 116-135 (145)
307 PF08663 HalX: HalX domain; I 20.8 2.1E+02 0.0045 17.7 3.6 18 29-46 40-57 (71)
308 PF06305 DUF1049: Protein of u 20.7 1.1E+02 0.0024 17.3 2.3 18 27-44 50-67 (68)
309 PF12221 HflK_N: Bacterial mem 20.6 98 0.0021 17.6 2.0 15 5-19 23-37 (42)
310 PRK13936 phosphoheptose isomer 20.6 3E+02 0.0065 19.0 5.7 43 7-49 2-44 (197)
311 PF13990 YjcZ: YjcZ-like prote 20.6 2.5E+02 0.0054 21.8 4.7 35 16-50 92-128 (270)
312 PF11853 DUF3373: Protein of u 20.6 94 0.002 25.9 2.6 19 26-44 32-50 (489)
313 PF14362 DUF4407: Domain of un 20.5 3.5E+02 0.0075 19.7 7.3 47 9-55 126-172 (301)
314 COG5074 t-SNARE complex subuni 20.4 2.1E+02 0.0045 22.5 4.2 37 12-48 52-88 (280)
315 PF01638 HxlR: HxlR-like helix 20.4 87 0.0019 19.0 1.8 24 10-39 22-45 (90)
316 PF12205 GIT1_C: G protein-cou 20.2 2.8E+02 0.006 18.9 4.5 45 2-46 22-76 (123)
317 PRK08032 fliD flagellar cappin 20.1 2.3E+02 0.005 22.5 4.6 8 29-36 424-431 (462)
318 PF06480 FtsH_ext: FtsH Extrac 20.1 1.5E+02 0.0032 17.2 2.8 23 33-55 86-108 (110)
No 1
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=170.38 Aligned_cols=56 Identities=54% Similarity=0.799 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 035166 1 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASP 56 (71)
Q Consensus 1 lT~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~ 56 (71)
||.+||+||||.|+|||+||++|++||||||+|||||||||+|||+|+|||++++.
T Consensus 17 LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~qagvE~~~s~ 72 (73)
T KOG4117|consen 17 LTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEELESE 72 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHccccCCCCC
Confidence 68999999999999999999999999999999999999999999999999999875
No 2
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=99.96 E-value=2.3e-30 Score=156.08 Aligned_cols=51 Identities=67% Similarity=0.999 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 1 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 1 lT~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
||+||++||+|||+||++||++|++||||||+|||+||+||+|||+++|+|
T Consensus 4 lt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qag~~ 54 (54)
T PF06825_consen 4 LTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQAGVE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999999986
No 3
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=94.57 E-value=0.14 Score=30.15 Aligned_cols=24 Identities=25% Similarity=0.536 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI 41 (71)
.--..+..++|+|+.||..||..+
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333445567999999999999875
No 4
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.25 Score=33.68 Aligned_cols=46 Identities=37% Similarity=0.599 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhHHHHHHHHHHHHHh
Q 035166 2 TAFVQNLLQQMQSRFQTMSESIIAKI---------------DEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~~I~~ri---------------DdMg~RIDdLEksI~dLm~q 47 (71)
..||+.|++|.+..=...-..|-.|| ++.-.|||.||+.+++|=++
T Consensus 45 k~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 45 KRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999998866554444444443 45568999999999999764
No 5
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=92.14 E-value=0.86 Score=32.80 Aligned_cols=44 Identities=20% Similarity=0.508 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
-+.++.+.++..|.+..+++-.++|.+..||..|+..|++-..+
T Consensus 71 ~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 71 QINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777888888889999999999999998876654
No 6
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=91.36 E-value=0.93 Score=35.43 Aligned_cols=43 Identities=26% Similarity=0.533 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHhhc
Q 035166 7 NLLQQMQSRFQTMSESIIAK--------IDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~r--------iDdMg~RIDdLEksI~dLm~qaG 49 (71)
+-+-+++-.|+.+.+.++.. |||++.||.+||+.+..|-.+.+
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788899999998865 79999999999999999988765
No 7
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=90.87 E-value=0.33 Score=41.00 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEks 40 (71)
..+..|..|+++.|+.+|.. |.|.-+|+|.||+.
T Consensus 287 ~aL~~L~~qL~nnF~AISss----I~dIy~RLd~leAd 320 (610)
T PF01601_consen 287 QALNQLTSQLSNNFGAISSS----IQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHCCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHhhc
Confidence 45778999999999997766 56899999999986
No 8
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=90.21 E-value=1.8 Score=28.66 Aligned_cols=19 Identities=26% Similarity=0.705 Sum_probs=16.1
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm 45 (71)
|+.+..|||.||+.|..|-
T Consensus 98 v~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 98 IEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788889999999998874
No 9
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=88.87 E-value=4.1 Score=28.96 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 7 NLLQQMQSRFQTMSESIIA--------KIDEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~--------riDdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
.=+++|+.......+.|++ -||||-++|-.||..|+. ..+.-...
T Consensus 99 ~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~-~e~~~~~~ 151 (175)
T PRK13182 99 RRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK-LEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhccCC
Confidence 3345555555555666553 399999999999999999 44444333
No 10
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=88.45 E-value=0.56 Score=28.07 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm 45 (71)
..-++.+++-||-.++..+..||...+ ++.||.=...+.
T Consensus 9 ~~lllRlL~rrFG~lp~~~~~~I~~l~--~eqLE~l~e~il 47 (59)
T PF14261_consen 9 ARLLLRLLTRRFGELPPEIQERIQQLS--LEQLEALAEAIL 47 (59)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHcCC--HHHHHHHHHHHh
Confidence 456789999999999999999999887 788887555544
No 11
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.35 E-value=2 Score=26.10 Aligned_cols=37 Identities=16% Similarity=0.469 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 10 QQMQSRFQTMSES---IIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 10 qqmQ~kFq~MS~~---I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
..+.+++..++.. +-.-+.+++..|++|+++|.+||.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544444 445689999999999999999985
No 12
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=88.21 E-value=1.1 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.485 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAK-IDEMGSRIDELEQSIND 43 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~r-iDdMg~RIDdLEksI~d 43 (71)
+..++..|+.-+......+-.| +||+.+||+-|+..++.
T Consensus 44 i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 44 IEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence 4556677777777777777777 49999999999988763
No 13
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=87.47 E-value=1.2 Score=30.11 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLE 38 (71)
..-+.|..+|..|+.|||.||
T Consensus 81 ktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 81 KTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 344778889999999999987
No 14
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=87.38 E-value=3.1 Score=28.57 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=17.2
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~ 46 (71)
||.++.|||.|++.|..|..
T Consensus 111 v~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 111 VEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999988864
No 15
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.34 E-value=2.6 Score=35.23 Aligned_cols=46 Identities=35% Similarity=0.507 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 035166 11 QMQSRFQTMSESIIA---KIDEMGSRIDELEQSINDLRSEMGIEGSASP 56 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~---riDdMg~RIDdLEksI~dLm~qaG~e~~~~~ 56 (71)
.+|.|++.||.++-. .-+..-+||-+||.+|.+|-++.....++.|
T Consensus 26 ~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~ 74 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP 74 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 468899999998763 4588889999999999999998876654444
No 16
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=86.70 E-value=4 Score=26.08 Aligned_cols=38 Identities=21% Similarity=0.599 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
..-++++..++..+ ..-+.+||++-.+|..||+.+..|
T Consensus 48 ~~~~~~l~~k~~~l-~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 48 EKNLEDLNQKYEEL-QPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666555 334566677777777777666654
No 17
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.67 E-value=1.8 Score=26.19 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
+.++.|+.. +=.|+|++..|++.||+..+.+
T Consensus 2 ~~i~e~l~~----ie~~l~~~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 2 QDIKEKLNR----IETKLDNHEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 455556544 5677888888888888876544
No 18
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=84.72 E-value=9.9 Score=31.42 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 6 QNLLQQMQSRFQTMSESII---AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~---~riDdMg~RIDdLEksI~dLm~qa 48 (71)
|.-+.+++.+|..+-.+.- .+..++..||++||..+..|-.|.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445566677776644333 556788999999999999998886
No 19
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=83.53 E-value=8.9 Score=26.96 Aligned_cols=45 Identities=20% Similarity=0.450 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+.+.+++.-++.++..++..|-..+.++..|+|.+..++.+-+.+
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~ 78 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQ 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777766677777777776666665543
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.38 E-value=8.3 Score=26.46 Aligned_cols=43 Identities=16% Similarity=0.389 Sum_probs=26.1
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 2 TAFVQNL---LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 2 T~~Vq~L---LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
+.+|..+ |+|+.+.....=..+..|||.+..++|+...-....
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i 87 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQI 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444455 444455555555677788888888887765544433
No 21
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=81.60 E-value=5.6 Score=30.07 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAK--------IDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~r--------iDdMg~RIDdLEksI~dLm 45 (71)
+-.++.+++.+.+.++.- ||++..||.+|++.+..|.
T Consensus 248 ~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 248 LMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888888854 7999999999999998773
No 22
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.50 E-value=7.8 Score=24.74 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm 45 (71)
.-++..|+.+..+|..+...|-.|++-...+ ++||..|..|-
T Consensus 4 ~~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~ 45 (89)
T PF13747_consen 4 YSLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLD 45 (89)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHH
Confidence 3467788999999999999999999887776 88888886553
No 23
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=80.78 E-value=11 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
|.+|..... .+.||++|+..|..+-..+++++.-
T Consensus 76 qk~~~k~ae-~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 76 QKRFAKFAE-QLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 4556777777777776666666653
No 24
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=80.41 E-value=2.4 Score=21.90 Aligned_cols=19 Identities=26% Similarity=0.677 Sum_probs=15.3
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm 45 (71)
|+..-+||-|||+.+++-.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5667789999999998743
No 25
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=80.36 E-value=6.6 Score=23.58 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
|-.-+|+=++.|.+.+-+-=+.+-+|||+.-+.|.+|=.
T Consensus 4 lt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~ 42 (54)
T PF06825_consen 4 LTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334445556666555555556666889999999988743
No 26
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=80.28 E-value=14 Score=25.33 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
-|-+|-..+|++|..-++.|...=....+||.+.|..++-++++.+
T Consensus 28 ~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 28 PVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999988764
No 27
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=78.40 E-value=8.3 Score=27.72 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
++.-++.|+++++ ..+..|.+.+..++|.|...|..|-....
T Consensus 68 ~e~~i~~~~~~v~---~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 68 FEEQINNMQERVE---NQISEKQEQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554444 46667888888999999999888876544
No 28
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=77.09 E-value=2.8 Score=32.44 Aligned_cols=24 Identities=42% Similarity=0.728 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm 45 (71)
.+-.|||++..||.+||..+.++-
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 456777777777777777776643
No 29
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=76.50 E-value=14 Score=27.71 Aligned_cols=40 Identities=18% Similarity=0.364 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm 45 (71)
...++-.-..|..|+..+..-+++|-..+..+|+.+..++
T Consensus 197 ~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~ 236 (267)
T PF09903_consen 197 RQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLL 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666778999999999999999999999999999998
No 30
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=74.96 E-value=2 Score=31.02 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 035166 16 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASP 56 (71)
Q Consensus 16 Fq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~ 56 (71)
||.+..|+|.|+=.+ |.++|+.+..|+...|.......
T Consensus 129 FQDLTGQ~IkKVv~~---l~~vE~~L~~ll~~~g~~~~~~~ 166 (214)
T PF04344_consen 129 FQDLTGQRIKKVVNL---LQEVEERLVQLLVIFGPEEEAAE 166 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTT-----------
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccccccc
Confidence 999999999997555 77999999999999998876643
No 31
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=6.6 Score=30.20 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 035166 34 IDELEQSINDL 44 (71)
Q Consensus 34 IDdLEksI~dL 44 (71)
|.+||+||.+|
T Consensus 208 ik~LEksi~EL 218 (297)
T KOG0810|consen 208 IKKLEKSIREL 218 (297)
T ss_pred HHHHHHHHHHH
Confidence 45566666665
No 32
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=73.43 E-value=14 Score=30.89 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------H-----------HHHHhhhHHHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIA-----------------K-----------IDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~-----------------r-----------iDdMg~RIDdLEksI~dLm~ 46 (71)
..|+..|+|+|+||.....+.-. + +..+-..|.||+..|.|||-
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 36788899999999877665431 1 34556678899999999984
No 33
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=72.74 E-value=12 Score=24.07 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=8.9
Q ss_pred HHHhhhHHHHHHHHHHH
Q 035166 28 DEMGSRIDELEQSINDL 44 (71)
Q Consensus 28 DdMg~RIDdLEksI~dL 44 (71)
|..-+||||.-.-|.||
T Consensus 37 DQII~RiDDM~~riDDL 53 (73)
T KOG4117|consen 37 DQIIGRIDDMSSRIDDL 53 (73)
T ss_pred HHHHHHHhhhhhhhHHH
Confidence 44445555555555555
No 34
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=72.68 E-value=4.5 Score=22.73 Aligned_cols=17 Identities=41% Similarity=0.743 Sum_probs=13.2
Q ss_pred HhhhHHHHHHHHHHHHH
Q 035166 30 MGSRIDELEQSINDLRS 46 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~ 46 (71)
|-+|+|+|.++|.+|..
T Consensus 20 ~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 20 IEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55788888888888865
No 35
>PRK06771 hypothetical protein; Provisional
Probab=70.75 E-value=12 Score=24.89 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.0
Q ss_pred HhhhHHHHHHHHHHHHHhhccCCCCC
Q 035166 30 MGSRIDELEQSINDLRSEMGIEGSAS 55 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qaG~e~~~~ 55 (71)
|-+|+..+|.+++-+..+.|+.++..
T Consensus 28 ~~~~~k~ie~~L~~I~~~~Gi~~~~~ 53 (93)
T PRK06771 28 TDARLKRMEDRLQLITKEMGIVDREP 53 (93)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 44599999999999999999999863
No 36
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=69.71 E-value=10 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.+-|+|-+.||-+=.|-|+|...+..|+.
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34445555555555555555555555553
No 37
>PRK04406 hypothetical protein; Provisional
Probab=69.36 E-value=4.9 Score=25.10 Aligned_cols=15 Identities=7% Similarity=0.319 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhh
Q 035166 34 IDELEQSINDLRSEM 48 (71)
Q Consensus 34 IDdLEksI~dLm~qa 48 (71)
||.|++.+..|..+.
T Consensus 41 I~~L~~ql~~L~~rl 55 (75)
T PRK04406 41 ITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555454433
No 38
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=68.88 E-value=5.4 Score=28.55 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
..++.|+.|.-++..++.+|++-|..++.+.+.
T Consensus 120 ~~~~~ilsk~~~i~~k~~~L~egi~~i~~~~~~ 152 (214)
T PF00103_consen 120 EAPDAILSKAKEIEEKIKELLEGIKKILSKMQD 152 (214)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCcHHHhchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 447899999999999999999999999999983
No 39
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=68.42 E-value=7.6 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=25.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 035166 27 IDEMGSRIDELEQSINDLRSEMGIEGSASPS 57 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG~e~~~~~~ 57 (71)
+|..-.|||.||+-..||++......++-.+
T Consensus 33 ~~pi~E~i~kLe~~addL~nsLdP~~~~l~S 63 (96)
T PRK00965 33 MDPIEEEINKLEALADDLENSLDPRNPPLNS 63 (96)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCChhhc
Confidence 5777789999999999999988777665544
No 40
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=67.84 E-value=8.6 Score=25.68 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=26.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCCCCCC
Q 035166 27 IDEMGSRIDELEQSINDLRSEMGIEGSASPSL 58 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG~e~~~~~~~ 58 (71)
+|..-.+||.||+-..||++....+.++-.+-
T Consensus 32 ~~pi~eqi~kLe~~addl~nsLdP~~~~l~S~ 63 (97)
T PF05440_consen 32 MDPINEQIDKLEKAADDLVNSLDPRTPPLNSF 63 (97)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCCccccC
Confidence 67778899999999999999887776655443
No 41
>PF03500 Cellsynth_D: Cellulose synthase subunit D; InterPro: IPR022798 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity []. An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsD is 17.3kDa []. The function of BcsD is unknown. This entry represents the D subunit from bacterial cellulose synthase.; PDB: 3AJ1_B 3AJ2_A 3A8E_A.
Probab=67.11 E-value=36 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.457 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhc
Q 035166 2 TAFVQNLLQQMQSRFQT-MSESIIAKIDEMGSR------------IDELEQSINDLRSEMG 49 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~-MS~~I~~riDdMg~R------------IDdLEksI~dLm~qaG 49 (71)
+-|++.|+.++.+.-.. =+...+ -.||.| +++||.+||......+
T Consensus 2 ~lFl~aLa~E~~~q~g~~e~~~fL---r~mG~rlA~r~PLp~~~Tv~~LE~~iN~~la~~~ 59 (144)
T PF03500_consen 2 SLFLRALAEEFEDQAGEEELRAFL---RRMGERLAARHPLPACETVADLERAINAVLARFD 59 (144)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHH---HHHHHHHCTTB-----SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHH---HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 56788887777655422 223333 334444 7999999999988764
No 42
>PHA03332 membrane glycoprotein; Provisional
Probab=67.02 E-value=16 Score=33.69 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
..+|-++...+|..+-.+||+--.|||+||.++++=+-
T Consensus 914 i~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~ 951 (1328)
T PHA03332 914 ITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFL 951 (1328)
T ss_pred HHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHH
Confidence 34555556666666668899999999999998876543
No 43
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=66.92 E-value=39 Score=23.77 Aligned_cols=43 Identities=23% Similarity=0.489 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKI----DEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~ri----DdMg~RIDdLEksI~dLm~q 47 (71)
+..++..++.||++....+..+| |.+-.+|+.+..-++.|-..
T Consensus 54 l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ss 100 (140)
T PF04513_consen 54 LTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSS 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888888888888 66668888888888887654
No 44
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=66.14 E-value=4.3 Score=23.03 Aligned_cols=12 Identities=58% Similarity=0.977 Sum_probs=9.4
Q ss_pred HHHhhhHHHHHH
Q 035166 28 DEMGSRIDELEQ 39 (71)
Q Consensus 28 DdMg~RIDdLEk 39 (71)
|+..+|||+||+
T Consensus 24 ~~Le~rI~ele~ 35 (36)
T PF13887_consen 24 DNLETRIDELER 35 (36)
T ss_pred ccHHHHHHHHhh
Confidence 777888888875
No 45
>COG5570 Uncharacterized small protein [Function unknown]
Probab=66.13 E-value=8 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
|-++|++.++|=-+||..|.+-|+.-+.+.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd 32 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDD 32 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcch
Confidence 678899999999999999999998766654
No 46
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.97 E-value=40 Score=23.09 Aligned_cols=42 Identities=14% Similarity=0.396 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.+-...+-...+.+|+.|-.-=+.++.|||.|..++.+.+.-
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei 83 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEI 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344555666677777777777788999999999998887653
No 47
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=65.91 E-value=6.2 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhccC
Q 035166 5 VQNLLQQMQSRFQ------TMSESIIAKIDEMGSRIDELEQSINDLR-SEMGIE 51 (71)
Q Consensus 5 Vq~LLqqmQ~kFq------~MS~~I~~riDdMg~RIDdLEksI~dLm-~qaG~e 51 (71)
.+.++++|..-|. ..-+.++..|-++-.||..+|+.|-+|. .++|+.
T Consensus 108 ~~~~~~~l~~~~~~ikl~~k~id~L~~~lr~~~~~Ir~~Er~i~~l~v~~~gmp 161 (211)
T PF04546_consen 108 YQKLREELAEEFMEIKLSPKQIDRLVEQLREIVERIRQQERRIMRLCVRRAGMP 161 (211)
T ss_dssp HHHHHHHHHHHHTTCEE-HHHHHHHCHHHHCCCHHHHHHHHHHHHCCCTTTT--
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5678888888886 4456777778888999999999999998 888874
No 48
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=65.54 E-value=15 Score=24.49 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
|..|.+...+.+-.|.++|-..-++||+.|.+
T Consensus 65 ~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888899999999999999999999975
No 49
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=65.38 E-value=25 Score=26.08 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
-||.+..|+|.|+=++ |.++|+++..++...+.+
T Consensus 140 dFQDLTGQvI~kVi~~---v~~vE~~L~~ll~~~~~~ 173 (214)
T PRK11166 140 DFQDLTGQVIKRMMDV---IQEIERQLLMVLLENIPE 173 (214)
T ss_pred cchHhHhHHHHHHHHH---HHHHHHHHHHHHHHhCcc
Confidence 3999999999998665 668999999999887753
No 50
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=64.87 E-value=26 Score=22.95 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.|...+.....-|.+-......++.++..+||.|++.+..-..
T Consensus 124 ~v~~~l~~a~~al~~~d~~~~~~i~~~e~~id~l~~~i~~~~~ 166 (212)
T TIGR02135 124 LALKMLKDALDAFLNKDAELARQVAEMDERVDELYRQIFRELV 166 (212)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556555666777889999999999987765544
No 51
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.81 E-value=58 Score=24.61 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 035166 14 SRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSA 54 (71)
Q Consensus 14 ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~ 54 (71)
..-......+-.++.+...++++.|+.+.+...+.|+-.+.
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 33446677888999999999999999999999999987654
No 52
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=64.74 E-value=33 Score=21.66 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=8.7
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dL 44 (71)
.|++.+..+|+.|++++.++
T Consensus 70 ~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 70 ERLETIELRIKRLERQEEDL 89 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 53
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=64.37 E-value=31 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
|..++..|.++|.. +..+++.+|+.|+.+-+++++++...
T Consensus 238 I~~~~~~l~~~~~~----~~~~~~~l~k~l~~a~~~~~~~~~~~ 277 (304)
T PF02646_consen 238 IAELAGKLYDRFGK----FVEHLEKLGKSLDKAVKSYNKAVGSL 277 (304)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777765 45567788888888888877777543
No 54
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=63.76 E-value=46 Score=24.00 Aligned_cols=43 Identities=21% Similarity=0.513 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQ-------TMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq-------~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
..+.||..++.-|+ .+...|-.+|.+-..+++||...+.+-..
T Consensus 157 ~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 157 EAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888773 55566777778888888888777776544
No 55
>PRK11546 zraP zinc resistance protein; Provisional
Probab=63.32 E-value=50 Score=23.22 Aligned_cols=44 Identities=16% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEM----------GSRIDELEQSINDLRSEM 48 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdM----------g~RIDdLEksI~dLm~qa 48 (71)
+|.+.+..+.++..+=++|..|=.|+ ..+|..|-+.|.+|..+.
T Consensus 52 ~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444555555556777777776665 356777777777776543
No 56
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=63.30 E-value=25 Score=22.47 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
.+-.|+|.++.++++|+..++++-.=...+
T Consensus 39 ~l~~klDa~~~~l~~l~~~V~~I~~iL~~~ 68 (75)
T PF05531_consen 39 ELNKKLDAQSAQLTTLNTKVNEIQDILNPD 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 467788889999999988777665554433
No 57
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=62.60 E-value=43 Score=25.85 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESI-----IAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I-----~~riDdMg~RIDdLEksI~dLm 45 (71)
++..|++-+.+|+.+...+ ..+|.....|+|+|++.+...+
T Consensus 325 ~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~ 370 (438)
T PRK00286 325 LERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAM 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544443 2345556666666666554433
No 58
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.18 E-value=30 Score=21.65 Aligned_cols=24 Identities=17% Similarity=0.548 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+-.|++....+++.|++++..+-.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~ 115 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQD 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554443
No 59
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=61.84 E-value=29 Score=26.24 Aligned_cols=33 Identities=18% Similarity=0.449 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
|-.-||.+..|||.|+=+. |.++|+++-.+...
T Consensus 140 mAQDfQDLTGQVIKrv~dl---VqeiE~~Lv~il~d 172 (217)
T COG3143 140 MAQDFQDLTGQVIKRVMDV---VQEIESQLVMILLD 172 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHc
Confidence 3456999999999998666 66889999998833
No 60
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=61.74 E-value=22 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
.+-+.|..-|..+..++=.--.||-..|++|++.|.-
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~ 138 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQR 138 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777766665555555555555555543
No 61
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.30 E-value=29 Score=21.93 Aligned_cols=44 Identities=14% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
||..=..........--..|-.+|+.+...+++|++.+.++...
T Consensus 56 fv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 56 LVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333344444444444556666777777777777777776554
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.23 E-value=50 Score=24.00 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.=|..++.+...+-.+.-.+-.+|..+++++++.|++|.+
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~ 139 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKE 139 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555556666666666666666665544
No 63
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.67 E-value=35 Score=20.54 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=11.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhcc
Q 035166 29 EMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~qaG~ 50 (71)
+-...||.|++.+..|..+..-
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555443
No 64
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=60.43 E-value=11 Score=23.26 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=12.4
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 035166 30 MGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qa 48 (71)
||.||.+||+.+..|..+-
T Consensus 3 ~g~~l~~l~~~l~~l~~~~ 21 (70)
T PF10975_consen 3 MGQRLAELEQQLKQLEDQQ 21 (70)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 6667777777666665544
No 65
>PRK03100 sec-independent translocase; Provisional
Probab=58.29 E-value=57 Score=22.74 Aligned_cols=37 Identities=14% Similarity=0.391 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKID-EMGSRIDELEQSINDLR 45 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riD-dMg~RIDdLEksI~dLm 45 (71)
+-+.-.+|..+...+-..++ +|+..+|||.+.+.+|-
T Consensus 33 lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~ 70 (136)
T PRK03100 33 TARALRQARDYASGATSQLREELGPEFDDLRKPLGELQ 70 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455668788888888884 78888999988776553
No 66
>PF02524 KID: KID repeat; InterPro: IPR003900 This group of proteins contains the KID repeat as found in Borrelia and spirochete Repeat motif-containing proteins including RepA/Rep+, RepU and various Bdr proteins. RepA and related Borrelia proteins have been suggested to play an important genus-wide role in the biology of the Borrelia []. Bdr proteins are polymorphic inner membrane proteins produced by most Borrelia species []. The bdr genes of encode proteins that form three distinct subfamilies: BdrD, BdrE, and BdrF. bdr orthologues have been appear to be present in all Borrelia species that have been analysed []. It is thought that BdrF2 and the other proteins encoded by the operon form an inner-membrane-associated protein complex that may interact with DNA and which may act during transmission or in the early stages of infection [].
Probab=58.27 E-value=3.2 Score=18.29 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=7.8
Q ss_pred hHHHHHHHHH
Q 035166 33 RIDELEQSIN 42 (71)
Q Consensus 33 RIDdLEksI~ 42 (71)
+||..|||++
T Consensus 1 KID~VEknL~ 10 (11)
T PF02524_consen 1 KIDSVEKNLN 10 (11)
T ss_pred CcchHhhhcc
Confidence 4888898874
No 67
>PRK14127 cell division protein GpsB; Provisional
Probab=58.16 E-value=54 Score=21.98 Aligned_cols=43 Identities=14% Similarity=0.420 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
=|+..|+++-.-++.+.. .+.++-.++..|++.|.++-.+...
T Consensus 27 EVD~FLd~V~~dye~l~~----e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 27 EVDKFLDDVIKDYEAFQK----EIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 378888888888887644 5667888888888888888887664
No 68
>PRK11519 tyrosine kinase; Provisional
Probab=57.65 E-value=61 Score=26.95 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
|++..++.-+..-+...+.|-.|+.+...++++.|+.+++...+.|+-.
T Consensus 253 Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 253 YLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4444444444444567788889999999999999999999999998754
No 69
>PRK00846 hypothetical protein; Provisional
Probab=57.45 E-value=13 Score=23.67 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 035166 34 IDELEQSINDLRSEM 48 (71)
Q Consensus 34 IDdLEksI~dLm~qa 48 (71)
||.|...|.-|..+.
T Consensus 43 I~~L~~ql~~L~~rL 57 (77)
T PRK00846 43 GARNAELIRHLLEDL 57 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 70
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=57.05 E-value=59 Score=22.20 Aligned_cols=42 Identities=14% Similarity=0.373 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
.-+++|+.-+.+-++.|....-.-..+|.++++.++..+.+-
T Consensus 27 ~~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~~ 68 (210)
T PF12896_consen 27 SQIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQEK 68 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888889999999999888999999999998766543
No 71
>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length. The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.
Probab=57.03 E-value=46 Score=22.99 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
.|...+.+.-|.-|++|++.+...++.+-..|+.++.
T Consensus 80 ~Fa~~l~~~wq~w~~~~~~~~~~~L~~~~~~i~~~~~ 116 (166)
T PF12462_consen 80 RFAHHLNQAWQQWSQEQSEQLAEVLPQWLQAIQRLSA 116 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999888888764
No 72
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.86 E-value=67 Score=26.40 Aligned_cols=50 Identities=6% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
|++.-++.=.+.-....+.+-.||+++..++.+.|+.+.+...+.|+-.+
T Consensus 180 Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~ 229 (754)
T TIGR01005 180 YIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG 229 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 33333333333445568889999999999999999999999999998654
No 73
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=56.35 E-value=21 Score=24.61 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.+-.||||+-.|+-.||.++..|-..
T Consensus 37 ~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 37 SMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 46688999999999999998887653
No 74
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=56.06 E-value=19 Score=21.33 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 19 MSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
+-.++-++|.+=..+|+-|+..|..+.......
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~ 66 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRSQNS 66 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 455677788999999999999999987665443
No 75
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.31 E-value=51 Score=21.32 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=9.6
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dL 44 (71)
.+|-+|..+++.|+..|..+
T Consensus 72 l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 72 LELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33445555555555554443
No 76
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=55.22 E-value=21 Score=22.53 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 19 MSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
+-.++..+.+-|-.||+-||+=+.
T Consensus 43 ~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 43 LLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 335666777888889999887553
No 77
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=55.19 E-value=53 Score=20.98 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=9.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dL 44 (71)
-.|++.+-.+|+.||+.+..|
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l 93 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERL 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 78
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.47 E-value=43 Score=21.41 Aligned_cols=42 Identities=12% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSES---IIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~---I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+..++..+.+|...+... +-.+++..-..+.+++++|.+++.
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666667776655332 234455566666666666666553
No 79
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=53.79 E-value=28 Score=24.44 Aligned_cols=48 Identities=15% Similarity=0.340 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHhhccCCCCCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE----QSINDLRSEMGIEGSASP 56 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE----ksI~dLm~qaG~e~~~~~ 56 (71)
+-.+..+|+..=+++...+||++.||-.|= .+..+++.-+.+.+.+..
T Consensus 46 F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~ike~~~~ 97 (156)
T COG0783 46 FFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSIKEEPGD 97 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCCcccCCC
Confidence 456788899999999999999999998773 456666666666665544
No 80
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=53.61 E-value=60 Score=21.16 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
.|...|...-+-|.+-......++-++-.+||.|+..|...
T Consensus 20 ~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~~~i~~~ 60 (212)
T TIGR02135 20 LVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKIEEK 60 (212)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHHHHHHHH
Confidence 34455555555555555567777888888899999888763
No 81
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=53.54 E-value=36 Score=28.45 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm 45 (71)
.-+|-||..||.|||+|..+.
T Consensus 472 nivd~lG~EvDRlEkel~~~~ 492 (503)
T KOG2802|consen 472 NIVDTLGAEVDRLEKELKKRN 492 (503)
T ss_pred HHHHHhhhHHHHHHHHHHHhC
Confidence 347999999999999998764
No 82
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.43 E-value=50 Score=25.49 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
.-......+-.++++.-.++++.|+.+.+...+.|+..+
T Consensus 158 ~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~ 196 (498)
T TIGR03007 158 DSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILP 196 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 344566777789999999999999999999999887543
No 83
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.46 E-value=91 Score=25.97 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=38.0
Q ss_pred HHHHHH-HHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 4 FVQNLL-QQMQSRFQ---TMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 4 ~Vq~LL-qqmQ~kFq---~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
+++..+ +++..|.+ ...+.|-.|+.+...++++.|+.+++...+.|+-.+
T Consensus 249 la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~ 302 (726)
T PRK09841 249 IANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL 302 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333333 45555554 556788899999999999999999999999887543
No 84
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.86 E-value=47 Score=19.15 Aligned_cols=37 Identities=16% Similarity=0.531 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
..+++|++++..++ ...+.+..+++.|+..+..|-.+
T Consensus 26 ~~~~~Le~~~~~L~----~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELE----SENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666777766544 44566777788888877777654
No 85
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=50.43 E-value=16 Score=24.03 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI 41 (71)
-..|..|+++|..-|+.|||-+
T Consensus 59 ~a~i~ekl~d~te~l~~LEkpv 80 (82)
T COG5460 59 RAVIEEKLADMTEELFALEKPV 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3467889999999999999854
No 86
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=50.16 E-value=60 Score=20.08 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=12.8
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 035166 28 DEMGSRIDELEQSINDLR 45 (71)
Q Consensus 28 DdMg~RIDdLEksI~dLm 45 (71)
...-.||+.||+-|++|-
T Consensus 60 ~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 60 ARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344677888888888774
No 87
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=49.60 E-value=58 Score=19.81 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+-..| .|+..-.-..-.|+.|.-.|..+|+..|..|-.+.
T Consensus 16 ~~eEL-~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 16 IQEEL-TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 35777777777889999999999999998887654
No 88
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.40 E-value=55 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
|..+.-||+.+.. .+..||+|+.-.|.||..-.-|
T Consensus 81 ~deLn~KfenL~P-~lqQIDaiddst~kLEaAa~~L 115 (120)
T KOG4559|consen 81 LDELNLKFENLAP-MLQQIDAIDDSTDKLEAAAAKL 115 (120)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 6777888888754 5678999999999999865543
No 89
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=49.22 E-value=70 Score=21.99 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
.|...|...-+-|.+-......++-++-..||.|+..|.+.....
T Consensus 31 ~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~~~I~~~l~~~ 75 (236)
T PRK11115 31 LVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACVRI 75 (236)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 344444444444554445666778888888999998887655544
No 90
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=49.09 E-value=66 Score=20.28 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKI---DEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~ri---DdMg~RIDdLEksI~dLm~q 47 (71)
++++-+||...|+.-...=|..| -+.-.++|+|++=|.+-...
T Consensus 4 L~~~~~Q~~~~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r 49 (109)
T PF03980_consen 4 LESVHQQMIEFLEENCKKEFEEILEERDVVEKLNELDKLIEEAKER 49 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44555555555544333333333 45677888888877665443
No 91
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=49.09 E-value=35 Score=20.74 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
--+...|+.+++......|.++.||-.|.-
T Consensus 31 ~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 31 PGLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346777888899888889999998887764
No 92
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=48.78 E-value=72 Score=21.79 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dL 44 (71)
..-.|+-+|+.||+.||..+.=|
T Consensus 18 ~cE~kL~~~e~~Lq~~E~~l~iL 40 (148)
T PF10152_consen 18 VCEEKLSDMEQRLQRLEATLNIL 40 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777888888888877433
No 93
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=48.63 E-value=63 Score=22.01 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQT----------MSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 6 q~LLqqmQ~kFq~----------MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
.-|||+|+++|.. .+.....|=...=.-|+..|+++.
T Consensus 23 ~~LLq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq 69 (109)
T PF15134_consen 23 EMLLQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQ 69 (109)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999852 344444555555555666666664
No 94
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=48.50 E-value=13 Score=31.36 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESII-------AKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~-------~riDdMg~RIDdLEksI~dLm~ 46 (71)
.|.-.+|+..|++++.+.+- .++++.-+||++||+-+.|...
T Consensus 369 TQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~ 417 (550)
T PF00509_consen 369 TQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIA 417 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccch
Confidence 35556667777766555432 3457778888888888887664
No 95
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=48.25 E-value=87 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.++.|..++..-..|-..|.-++.|+..||+-+.|-.-
T Consensus 30 ~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~l 67 (204)
T PF00517_consen 30 QEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQL 67 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHHH
Confidence 44556777766667777888899999999998887544
No 96
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=47.93 E-value=89 Score=21.43 Aligned_cols=53 Identities=21% Similarity=0.406 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKI---------------------DEMGSRIDELEQSINDLRSEMGIEGSASP 56 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~ri---------------------DdMg~RIDdLEksI~dLm~qaG~e~~~~~ 56 (71)
.+.+.|+.+++-|..=.+.|..-| .-.-+|++.|...+.+.|..+|...-.++
T Consensus 26 ~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g~~ki~t~ 99 (162)
T PF05565_consen 26 AIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAGIKKIKTP 99 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeecC
Confidence 344556666666655555444332 33456778888888999999998765544
No 97
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=47.46 E-value=46 Score=19.76 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+.|-.||++.-..|-+||+.=..|..|
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 457788999999999999988888765
No 98
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=47.33 E-value=59 Score=24.49 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEMGIEGSAS 55 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~ 55 (71)
.+..++.+-..++.-|=-||+.+|++.|...++.
T Consensus 131 ~L~~~Le~a~~~~qgL~sniaaIMtaLG~~~~~~ 164 (214)
T PF06875_consen 131 ELLRQLEEARASAQGLLSNIAAIMTALGFPVPPP 164 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 6678899999999999999999999999976443
No 99
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.32 E-value=1.3e+02 Score=23.26 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=38.6
Q ss_pred HHHHHHHHH------------HHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 5 VQNLLQQMQ------------SRFQTMSE--SIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 5 Vq~LLqqmQ------------~kFq~MS~--~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
|+.|+|||. .-|.++|+ .|++|.+==+.=+.+||+.=..|-...++++.
T Consensus 18 ~E~L~~qle~~~t~~~~~q~~~ffrtl~dlldV~er~elkseLlKelerQ~q~l~~w~~vpgv 80 (244)
T COG4582 18 IEFLIQQLEVNLTIVDHAQALHFFRTLSELLDVFERGEVRTELLKELDRQQQKLQTWIGVPGV 80 (244)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 677888883 45788887 56888888888889999998888888777653
No 100
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=46.23 E-value=47 Score=21.22 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+...|+...+++..-+|+++.||-.|.. +..++...+.+.+
T Consensus 29 f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~ 76 (139)
T cd01043 29 FFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKE 76 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCC
Confidence 4567788999999999999999999988753 3444444444443
No 101
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=46.12 E-value=77 Score=20.21 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=14.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 035166 27 IDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~q 47 (71)
+.++..|||.+.+.+.+|-++
T Consensus 37 v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 37 VTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776653
No 102
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=45.90 E-value=34 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
-.++.+++.++.|+.+|-+.+.+|..+.
T Consensus 103 ~~llaqLealsqqL~~ls~qv~~L~~~~ 130 (135)
T PHA03385 103 LVLLAQLEALSQQLQELSQQVAQLREQT 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3578889999999999999999998764
No 103
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=45.89 E-value=73 Score=19.84 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI~ 42 (71)
...+...+.++-.-|+|||++|.
T Consensus 41 ~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 41 KRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544
No 104
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.98 E-value=62 Score=25.15 Aligned_cols=41 Identities=20% Similarity=0.488 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 8 LLQQMQSRFQTMSESII--------AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~--------~riDdMg~RIDdLEksI~dLm~qa 48 (71)
-|.++-+|+..||..=+ .-|++...-|++|++.|.+|-.+.
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888875322 335566666666666666665443
No 105
>PRK09458 pspB phage shock protein B; Provisional
Probab=44.73 E-value=42 Score=21.52 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI 41 (71)
+++..+-+-|..||+.||+=+
T Consensus 45 ~~L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 45 AQLTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888744
No 106
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.34 E-value=83 Score=27.52 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCC
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSL 58 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~~ 58 (71)
+...|..-+-.|+|+...|=|+|++-++.||.-+|.+-++..-|
T Consensus 613 ~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~A 656 (741)
T KOG4460|consen 613 SLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDA 656 (741)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhH
Confidence 34566777888999999999999999999999999888776554
No 107
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=44.11 E-value=58 Score=18.19 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
..|..+|...-.=|.+-......++-++-..||++...+.+-
T Consensus 6 ~~~~~~l~~~~~~~~~~d~~~a~~i~~~e~~id~~~~~~~~~ 47 (88)
T PF01895_consen 6 ELVEEMLDDAIEAFEERDSELAQEIIQLEEEIDELYREIRRQ 47 (88)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456666777777777666667777777788888887777543
No 108
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.07 E-value=30 Score=28.71 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
..-...-.||+++.+.+..|++.+..+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445677888888888888887443
No 109
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=43.62 E-value=45 Score=21.08 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI 41 (71)
+++..+.+-|..||+.||+=+
T Consensus 45 ~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 45 QELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888888888754
No 110
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=43.61 E-value=74 Score=19.30 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=7.7
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm 45 (71)
++.+..++|.+-+.+++++
T Consensus 35 i~~l~~~~~~i~~e~~~ll 53 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLL 53 (90)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444433
No 111
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=43.51 E-value=70 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.+-..|.--+|||=.||+.||..+.-++.
T Consensus 79 DLKktiAVLLddiLqRl~kLE~kvd~lvv 107 (138)
T PF15027_consen 79 DLKKTIAVLLDDILQRLVKLESKVDNLVV 107 (138)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHee
Confidence 34445555589999999999999998653
No 112
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=43.36 E-value=90 Score=25.93 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
-|+++...++.+..++-..|+..-.+|+.|=+.|++|-.+...
T Consensus 154 ~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 154 RIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777778888888999999999999999999887643
No 113
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=43.06 E-value=41 Score=20.41 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 035166 13 QSRFQTMSESII 24 (71)
Q Consensus 13 Q~kFq~MS~~I~ 24 (71)
..+|..++|.+.
T Consensus 4 ~~~f~eL~D~~~ 15 (58)
T PF08653_consen 4 EPQFAELSDSME 15 (58)
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 114
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=43.05 E-value=40 Score=23.10 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=24.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEMGIEGSASP 56 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~ 56 (71)
--+|..-.||++||.-.+|+++......++=.
T Consensus 31 ldv~pi~Eqi~kLe~~vddl~~sldPstp~ln 62 (108)
T COG4062 31 LDVDPIEEQIKKLETLVDDLENSLDPSTPPLN 62 (108)
T ss_pred EeccHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 34678888999999999999998765544433
No 115
>PHA03395 p10 fibrous body protein; Provisional
Probab=42.94 E-value=96 Score=20.41 Aligned_cols=58 Identities=16% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCCCCCCCC
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKSND 64 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~~~ 64 (71)
|+-+..++..+... +.|-+++|.-+..++++...++++-.=.+.+-|+-|-.|.+.+.
T Consensus 24 Q~~V~~l~~nlpdv-~~l~~kLdaq~~~Ltti~tkv~~I~diLnpdiPdlP~~~~~~~~ 81 (87)
T PHA03395 24 QAAVDDVRANLPDV-TEINEKLDAQSASLDTISSAVDNITDILNPDIPDVPDVPVKPNR 81 (87)
T ss_pred HHHHHHHHhcCCcH-HHHHHHHHhHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccc
Confidence 33344444555443 35667788888888888766655444444455555554444433
No 116
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.71 E-value=60 Score=20.24 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+.+-...+..--+.+-.+++++-..|+.+++.++.+...+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555566666777777777777776665543
No 117
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=42.18 E-value=67 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLE 38 (71)
+..+...|..+-..-+.|.
T Consensus 100 ~~~v~~~L~~l~~~~~~l~ 118 (124)
T PF12296_consen 100 CSVVRADLQDLKTASDALS 118 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 118
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.16 E-value=19 Score=27.87 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHH
Q 035166 32 SRIDELEQSINDLR 45 (71)
Q Consensus 32 ~RIDdLEksI~dLm 45 (71)
.||..|+.++.||=
T Consensus 172 k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 172 KRIKKLEDKLDDLE 185 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 119
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=42.12 E-value=1.2e+02 Score=23.84 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESII-----AKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~-----~riDdMg~RIDdLEksI~d 43 (71)
+++.|++.+.+++.+...+. .+++..-.|+|.|++.+..
T Consensus 275 m~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~ 318 (432)
T TIGR00237 275 FDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQA 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443332 3345555555555555543
No 120
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=42.03 E-value=73 Score=18.75 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 035166 12 MQSRFQTMSE 21 (71)
Q Consensus 12 mQ~kFq~MS~ 21 (71)
++.++.....
T Consensus 64 ~~~~~~~~~~ 73 (89)
T PF05164_consen 64 LKRELDELEE 73 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 121
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=41.85 E-value=1.5e+02 Score=22.21 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 4 FVQNLLQQMQSRFQTMSESII-----AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~-----~riDdMg~RIDdLEksI~dLm~q 47 (71)
-...++..+|.+|-+.|..+- +.|+.+-..|..+|..+.+....
T Consensus 6 ~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~ 54 (207)
T PF05546_consen 6 KLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQE 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888777764 56788888888888888776543
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=41.69 E-value=70 Score=18.43 Aligned_cols=36 Identities=14% Similarity=0.453 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
-+++|+.+.+.+.. ...++..+++.|+..+..|..+
T Consensus 27 ~~~~Le~~~~~L~~----en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEA----ENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666544 3566778888888888777654
No 123
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=41.68 E-value=26 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhcc
Q 035166 33 RIDELEQSINDLRSEMGI 50 (71)
Q Consensus 33 RIDdLEksI~dLm~qaG~ 50 (71)
++++.|+.|..||..||-
T Consensus 7 ~L~~Idk~I~~lL~~A~~ 24 (117)
T PF10280_consen 7 QLNEIDKKIVSLLQHAGQ 24 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788999999988884
No 124
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=41.61 E-value=69 Score=20.31 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+...|+..+.....-+|.++.||-.|-
T Consensus 37 f~~l~~~~~~~~~ee~~Had~laEri~~lG 66 (148)
T cd01052 37 GEGIKEELEEAAEEELNHAELLAERIYELG 66 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 446778888888888888999999887774
No 125
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=41.58 E-value=55 Score=22.48 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+...|..+-+++..-+|+++.||-.|=- +..+...-+.+++
T Consensus 53 f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i~e 100 (162)
T PRK09448 53 FIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPLKS 100 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCCCC
Confidence 4456788888889999999999999977632 3445555555544
No 126
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=41.08 E-value=1e+02 Score=20.11 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
..|-..||.+.+.+|.||+.-.+|..+.
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L 56 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQL 56 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5678889999999999999888887654
No 127
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.83 E-value=1.3e+02 Score=24.16 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
=++.|++.|++--.-+...+.|=-.|..-||..++|++.
T Consensus 234 ~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 234 SIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 355666667766677788889999999999999999975
No 128
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=40.47 E-value=1.2e+02 Score=21.19 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+..|.+-.+.+...+..-+..|++|++.|.++..+
T Consensus 144 ~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 144 SRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 44577888888888888888999999999887654
No 129
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=40.38 E-value=61 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhH------HHHHHHHHHHHHhhc
Q 035166 21 ESIIAKIDEMGSRI------DELEQSINDLRSEMG 49 (71)
Q Consensus 21 ~~I~~riDdMg~RI------DdLEksI~dLm~qaG 49 (71)
..|+.||.+|..+| +++++.|.+++...+
T Consensus 142 ~~~~~ri~~~~~~~~~g~~~~~~~~~~~~i~~r~~ 176 (177)
T PF09580_consen 142 PDIFDRIRNLANRIRNGRPVSGFNDEIKEIVRRMF 176 (177)
T ss_pred HHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhhC
Confidence 35778888887777 788999999887654
No 130
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=40.09 E-value=75 Score=26.28 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCC
Q 035166 34 IDELEQSINDLRSEMGIEGSASPSLPSKSNDGP 66 (71)
Q Consensus 34 IDdLEksI~dLm~qaG~e~~~~~~~~~~~~~~~ 66 (71)
.+.|=..+...|-..|.+. |.+-.|++.++-|
T Consensus 398 F~kLk~~lp~wm~~~~~~~-~~~~~~~~~~~~~ 429 (431)
T PF05537_consen 398 FDKLKSMLPKWMGGTGNDN-PKPQEEPKNQDCP 429 (431)
T ss_pred HHHHHHHhHHhhCCCCcCC-CCCCCCCCCCCCC
Confidence 6789999999999999887 4444445554443
No 131
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=39.15 E-value=45 Score=23.22 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
++.+..++..+..+-..+-.-..+...||.+||+.|..+-..--++
T Consensus 84 d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~~P~e 129 (161)
T PF05873_consen 84 DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESARPFE 129 (161)
T ss_dssp -TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 3445666677777777777777888899999999998876544333
No 132
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=38.88 E-value=54 Score=24.42 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAK 26 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~r 26 (71)
+-.+|..+.++|-..-++|-.+
T Consensus 141 ~~~lld~i~d~~~~~le~i~~~ 162 (322)
T COG0598 141 LYALLDAIVDNYFPVLEQIEDE 162 (322)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555555554443333333
No 133
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=38.56 E-value=1.8e+02 Score=22.56 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
.++...++-=.+.|..-++.+..||.+...++..-|+.+.+-..+.|....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~ 230 (458)
T COG3206 180 AYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDA 230 (458)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 344555555567799999999999999999999999999999999998764
No 134
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=38.42 E-value=72 Score=17.64 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhHH
Q 035166 23 IIAKIDEMGSRID 35 (71)
Q Consensus 23 I~~riDdMg~RID 35 (71)
+...+++|+..|.
T Consensus 63 ~~~~L~~~~~~l~ 75 (86)
T PF06013_consen 63 LNEALEELSQALR 75 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344443333
No 135
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=38.38 E-value=1e+02 Score=19.51 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.|-.....|..+|.....+|++++.+|-.
T Consensus 28 ~mN~~~~~kY~~~~~~~~~l~~~~~~l~~ 56 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIAAGLEKNLEDLNQ 56 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555543
No 136
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=38.37 E-value=1.6e+02 Score=21.65 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
+++-++++.+.--..++..=-.|||+==+-|.+||+.|.........
T Consensus 163 vLD~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~~~~ 209 (302)
T PF07586_consen 163 VLDLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQQAEAWADC 209 (302)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 44555556555555666666788999999999999999666555544
No 137
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.31 E-value=1.7e+02 Score=22.62 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=6.8
Q ss_pred HHHHhhhHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSIN 42 (71)
Q Consensus 27 iDdMg~RIDdLEksI~ 42 (71)
++..-.++|.|++.+.
T Consensus 307 l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 307 LAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 138
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.24 E-value=29 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 27 IDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++---.||++||..++.||.+|..
T Consensus 47 l~r~R~~~~~Le~~l~~L~~~A~~ 70 (218)
T COG3159 47 LARLRNRIRELEEELAALMENARA 70 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567999999999999998864
No 139
>PF13864 Enkurin: Calmodulin-binding
Probab=37.92 E-value=1e+02 Score=19.33 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=15.3
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dL 44 (71)
.|=.+|-.+++.||+.|.=|
T Consensus 74 ~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 74 RRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44578888999999988644
No 140
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.80 E-value=93 Score=18.76 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
.|.+.| .++=+=|.||++|+..-.+|-..++
T Consensus 18 im~~Ni-~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 18 IMRENI-DKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHcCchHHHHHHHHHHHHHHhH
Confidence 344443 3444557788888888888877654
No 141
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=37.77 E-value=1e+02 Score=22.92 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
-.|+.-|...++.++-.|.+||-|+|+++.
T Consensus 46 ~~kYkfme~~l~a~~~~l~~kIPd~entLe 75 (187)
T KOG3313|consen 46 YGKYKFMEASLLAQKRRLKTKIPDIENTLE 75 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 345568999999999999999999999875
No 142
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=37.36 E-value=1.5e+02 Score=22.14 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
|+.+...++.+-..+-..|...-.+|+.|=++|++|-.+...
T Consensus 143 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 143 FNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666677777888888888888888888776643
No 143
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=37.28 E-value=93 Score=18.63 Aligned_cols=34 Identities=15% Similarity=0.411 Sum_probs=17.4
Q ss_pred HHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 17 QTMSESII---AKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 17 q~MS~~I~---~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
+.+++.|. ..||.+-.++..|...|.++-...+.
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~ 57 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPSGS 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 34444444 45899999999999999998855444
No 144
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.16 E-value=1.7e+02 Score=21.47 Aligned_cols=18 Identities=33% Similarity=0.678 Sum_probs=10.1
Q ss_pred HHHHHhhhHHHHHHHHHH
Q 035166 26 KIDEMGSRIDELEQSIND 43 (71)
Q Consensus 26 riDdMg~RIDdLEksI~d 43 (71)
+|+....|+|+++..+..
T Consensus 192 ~l~~~~~~Ld~l~~rL~~ 209 (319)
T PF02601_consen 192 KLEQQQQRLDELKQRLKQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555566666555544
No 145
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=37.13 E-value=71 Score=20.62 Aligned_cols=26 Identities=15% Similarity=0.441 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
..+.|.+.+.+++.|...|..|...|
T Consensus 53 ~d~~~e~~~~~~~~~~~~~~~k~~~l 78 (109)
T PF15249_consen 53 WDEEFETVAAELLKRFEKMLNKYRRL 78 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998888765
No 146
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=36.94 E-value=1.3e+02 Score=20.27 Aligned_cols=42 Identities=17% Similarity=0.440 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
++..+..-+..+.+=...+..++..|++.|++.|..+.....
T Consensus 96 F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~ 137 (275)
T PF03105_consen 96 FFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRS 137 (275)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444455555567778888888888888888866554
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=36.74 E-value=43 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=17.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh
Q 035166 26 KIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~q 47 (71)
.++.+..||..||+.+..+...
T Consensus 370 ~~~~~~~~~~~l~~~~~~~~~~ 391 (559)
T PRK05563 370 ELEVLLQRVEQLEQELKQLKAQ 391 (559)
T ss_pred CHHHHHHHHHHHHHHHHhcccC
Confidence 3567888999999999887653
No 148
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=36.37 E-value=70 Score=22.13 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
.|+..+++|..+|..|=+.|.+|..++|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~ 32 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLG 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555555555554444
No 149
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.22 E-value=1.3e+02 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 17 QTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 17 q~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
..-+..++.|-.+....|..|..+|.+++.++.-
T Consensus 79 ~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 79 NNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777788888888899999999998843
No 150
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.08 E-value=1.2e+02 Score=19.40 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
..++++++...+ .+..+++.+...|.+++.++..|-+=
T Consensus 5 ~~~~~~l~~~i~----~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 5 AAQLQVLQQEIE----ELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 45556677888888888777766543
No 151
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=35.95 E-value=66 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 035166 27 IDEMGSRIDELEQSINDLRSEMGIEGSA 54 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG~e~~~ 54 (71)
++-|..+||.|++.+.||-...-.+...
T Consensus 5 ~~~l~~~ld~l~~~l~d~~~~~~~e~~~ 32 (422)
T KOG2336|consen 5 FKALLDDLDVLQKRLSDLKLELKLESSS 32 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 5778999999999999999887766543
No 152
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.91 E-value=1.4e+02 Score=20.16 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
+++.++.+.+..-+..-..+..||.++..-.++.++-|.-|+ +.|+++
T Consensus 125 vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll-~L~~~~ 172 (182)
T PF15469_consen 125 VFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLL-ELNVEE 172 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hCCCCC
Confidence 567778888888888889999999999999999999995555 455543
No 153
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.89 E-value=1e+02 Score=18.56 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=8.2
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 035166 26 KIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dL 44 (71)
.|+.+..++..|++.+.++
T Consensus 77 ~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 77 EIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 154
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.89 E-value=1.3e+02 Score=25.45 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
++++..+++.+-..+-..|...-.+|+.|=++|++|-.+.-
T Consensus 143 fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~ 183 (676)
T PRK05683 143 FNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIA 183 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777778888888888888888888887763
No 155
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.84 E-value=1e+02 Score=18.69 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=7.3
Q ss_pred HhhhHHHHHHHHHHHH
Q 035166 30 MGSRIDELEQSINDLR 45 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm 45 (71)
+.++||.|...|+.|.
T Consensus 15 L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 156
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=35.31 E-value=1.8e+02 Score=25.09 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 035166 24 IAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 57 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~ 57 (71)
+++.|.--+++|++|+.+.+|-.++.-..|.+|.
T Consensus 147 ~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~ 180 (593)
T PRK15374 147 IKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG 180 (593)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 4556777889999999999998888777776654
No 157
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.27 E-value=63 Score=19.64 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=17.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 035166 27 IDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~q 47 (71)
++|...||-.||..|.-+-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588889999999998877654
No 158
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=35.21 E-value=1.5e+02 Score=23.52 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++++...++.+...+-..|...-.+|+.|=++|++|-.+.-.
T Consensus 138 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 138 LNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666667777778888888889999999988877643
No 159
>PRK00182 tatB sec-independent translocase; Provisional
Probab=35.18 E-value=1.5e+02 Score=21.30 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKI-DEMGSRIDELEQSINDL 44 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~ri-DdMg~RIDdLEksI~dL 44 (71)
+-.+-.+|..+....-..+ +|+|..+++|.+.+.+|
T Consensus 33 lg~~ir~~R~~~~~~k~el~~Elg~e~~elrk~l~~l 69 (160)
T PRK00182 33 VRAALLAARTAINNAKQQLDGDFGEEFDEFRKPLNQI 69 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444566777766666666 67888899998877764
No 160
>PF09277 Erythro-docking: Erythronolide synthase, docking; InterPro: IPR015357 Docking domains are found in prokaryotic erythronolide synthase. They adopt a structure consisting of a bundle of four alpha-helices, and mediate homodimerisation of the protein, stabilising the resulting complex []. ; PDB: 1PZQ_A.
Probab=34.96 E-value=24 Score=21.88 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=15.7
Q ss_pred HhhhHHHHHHHHHHHHHhhc
Q 035166 30 MGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qaG 49 (71)
.|.|+|.||+-+..|=.+-|
T Consensus 8 v~a~lDrLE~aL~aLpd~dG 27 (58)
T PF09277_consen 8 VGAELDRLEAALLALPDEDG 27 (58)
T ss_dssp THHHHHHHHHHHHHHTTSS-
T ss_pred hhHHHHHHHHHHhcCCcccc
Confidence 57899999999988866644
No 161
>PHA02100 hypothetical protein
Probab=34.93 E-value=50 Score=22.65 Aligned_cols=35 Identities=26% Similarity=0.571 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 13 QSRFQTMSESIIAKI--DEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 13 Q~kFq~MS~~I~~ri--DdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
-.+|.+ |.|+|++ .+| ||..|.++-+.|.++|+..
T Consensus 17 aa~f~t--dnilG~~VTpQv---lD~wE~elw~am~~~gdqk 53 (112)
T PHA02100 17 AAKFAT--DNILGNRISEEQ---IDAVENEVWEAATAAGVTG 53 (112)
T ss_pred HHHhcc--cchhhhhcCHHH---HHHHHHHHHHHHHHcccch
Confidence 345655 7888754 333 8999999999999998653
No 162
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=34.73 E-value=83 Score=19.06 Aligned_cols=36 Identities=22% Similarity=0.525 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
+|..-+..|+..|+.+-..+|+.++ +..++.+.|..
T Consensus 56 ~~~~~~~~~~~~l~~~v~~l~~~~~-l~~~l~~lg~~ 91 (140)
T cd01040 56 KFKAHGKRVLNALDEAIKNLDDLEA-LKALLAKLGRK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 5666777888888888888888876 66677766644
No 163
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=34.64 E-value=64 Score=15.95 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=10.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm 45 (71)
..++.|...++.++.-+.++.
T Consensus 41 ~~~~~~~~~~~~~~~l~~~l~ 61 (65)
T cd00082 41 EYLERIREEAERLLRLINDLL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554
No 164
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=34.62 E-value=2.1e+02 Score=21.97 Aligned_cols=40 Identities=8% Similarity=0.220 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSA 54 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~ 54 (71)
+|.....++-..-.++..+++.|.+.+++|.++......+
T Consensus 218 ~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~~~~~~ 257 (276)
T PF05929_consen 218 QLSEQETQVAELKQELKEQHEALTEDFAALKEKLSSTDAN 257 (276)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCCCCC
Confidence 4445555555566778788899999999999887665553
No 165
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.59 E-value=1.4e+02 Score=22.33 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
+..+++.|..+...|-.-|.+|-.-|.+-.+=|..|
T Consensus 165 I~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 165 IASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899988888888888888888777766544
No 166
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=34.34 E-value=1.4e+02 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 19 MSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
|...|-++|+-|+.-++++=++|++
T Consensus 179 ~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 179 MAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5666666677777666666666554
No 167
>PRK09546 zntB zinc transporter; Reviewed
Probab=34.10 E-value=76 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKI 27 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~ri 27 (71)
+-.+|..+-++|-..-+.|-.++
T Consensus 144 l~~lld~ivd~~~~~l~~i~~~l 166 (324)
T PRK09546 144 LVDVCDALTDHASEFIEELHDKI 166 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333
No 168
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=34.04 E-value=1.2e+02 Score=22.83 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=25.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhccC--CCCCCCCCC
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEMGIE--GSASPSLPS 60 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qaG~e--~~~~~~~~~ 60 (71)
-++-+|.+||+.|=+.|.-+|...... .+++|+.|.
T Consensus 124 p~lg~~~s~l~~Ll~~lq~lM~rl~~pq~~p~~PspP~ 161 (199)
T PF07400_consen 124 PELGTMHSRLKRLLNRLQLLMSRLELPQLTPPSPSPPL 161 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Confidence 456789999999988888888876554 444555444
No 169
>PF01420 Methylase_S: Type I restriction modification DNA specificity domain; InterPro: IPR000055 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the S subunit of type I restriction endonucleases (3.1.21.3 from EC). The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase to modify the DNA, methylating both strands []. Most of the proteins in this family have two copies of the domain.; GO: 0003677 DNA binding, 0006304 DNA modification; PDB: 1YF2_B 2Y7H_A 2Y7C_A 3OKG_A 1YDX_A.
Probab=33.91 E-value=1.1e+02 Score=18.67 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
..|...+|.+-+ .++|++.+.+.+.
T Consensus 142 ~~i~~~l~~~~~-~~~l~~~~~~~l~ 166 (167)
T PF01420_consen 142 QKIVEILDQLDK-KIALEKKIIAELE 166 (167)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 456677777777 7778877766654
No 170
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.81 E-value=2e+02 Score=23.91 Aligned_cols=42 Identities=12% Similarity=0.334 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++++...++.+-..+-..|...-.+|+.|=++|++|-.+.-.
T Consensus 148 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 148 IKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666677777788888999999999999999999887643
No 171
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=33.61 E-value=1.6e+02 Score=24.51 Aligned_cols=42 Identities=14% Similarity=0.387 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++.+..+++.+-..+-..|...-.+|+.|=++|++|-.+...
T Consensus 143 f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~~ 184 (624)
T PRK12714 143 FKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIGS 184 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666677777888888888888888888887743
No 172
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=33.61 E-value=79 Score=22.53 Aligned_cols=19 Identities=37% Similarity=0.742 Sum_probs=7.7
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~d 43 (71)
.|.+-+.++|+.|++.|.+
T Consensus 193 ~~~~~l~~~~~~~~~~i~~ 211 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIED 211 (239)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 173
>PRK10626 hypothetical protein; Provisional
Probab=32.63 E-value=2.1e+02 Score=21.67 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+.++.+...=+..+-.+=+++++|+.+||..=.+|+.
T Consensus 200 ~~Ie~e~~~q~~d~~~~~~~vC~~~~~le~qr~~L~~ 236 (239)
T PRK10626 200 QAIQTEWKNQEKDFQQFGKDVCSRVVTLEDQRKALVG 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444455557777888888877777765
No 174
>PF12792 CSS-motif: CSS motif domain associated with EAL ; InterPro: IPR024744 This domain, with its characteristic highly conserved CSS sequence motif, is found N-terminal to the EAL domain (PF00563 from PFAM), found in many putative cyclic diguanylate phosphodiesterases.
Probab=32.36 E-value=1.4e+02 Score=19.27 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 035166 11 QMQSRFQTMSESIIAKIDEMGS 32 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~ 32 (71)
+.|.+-+..+..++.|+|.+-.
T Consensus 2 ~~~~~~~~~a~~~~~~~e~~~~ 23 (208)
T PF12792_consen 2 QEQRDLDTYAQRALQRIESVLD 23 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666766666543
No 175
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=32.34 E-value=22 Score=18.33 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 19 MSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+++....+||+++.+-+ .|.++++.++
T Consensus 6 l~~~~~~~l~~~a~~~g---~s~s~~ir~a 32 (39)
T PF01402_consen 6 LPDELYERLDELAKELG---RSRSELIREA 32 (39)
T ss_dssp EEHHHHHHHHHHHHHHT---SSHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 45667777777776543 5666655543
No 176
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=32.20 E-value=95 Score=23.86 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI 41 (71)
-..|-....+|.+-|...++.|
T Consensus 338 l~~le~~q~~l~~~l~~~~~~L 359 (388)
T PF04912_consen 338 LSELESQQSDLQSQLKKWEELL 359 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444443333333
No 177
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=32.09 E-value=1.8e+02 Score=20.24 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+-.+|++=.+++|+|++.|.||-.
T Consensus 72 Le~kIs~q~~e~~dlkqeV~dLss 95 (120)
T COG4839 72 LESKISEQKTENDDLKQEVKDLSS 95 (120)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhcc
Confidence 345678889999999999998843
No 178
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=31.55 E-value=1.6e+02 Score=19.96 Aligned_cols=33 Identities=9% Similarity=0.337 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
.+.+|.+.+++|+..++.+..|.-++-.+=|+.
T Consensus 46 ~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~y 78 (104)
T COG4575 46 AESALKEARDRLGDTGDAVVQRSKAAADATDDY 78 (104)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 456777777777777777777776666665553
No 179
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=31.44 E-value=1.8e+02 Score=20.33 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 035166 2 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRID 35 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RID 35 (71)
+.||+++|+.-+.-|..+-..+..-+||+-.-++
T Consensus 84 ~~~l~~~l~~a~~i~~~l~s~L~N~~DdI~~~~~ 117 (126)
T PHA02604 84 IAFLDELLQEAEEIYKELPSALQSTLDDITGLCY 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4689999999999999888888888888765443
No 180
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=31.41 E-value=1.2e+02 Score=24.80 Aligned_cols=39 Identities=3% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRID-ELEQSIND 43 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RID-dLEksI~d 43 (71)
..........+|..++.+.+.||+.|-.+++ .+++.+.+
T Consensus 111 ~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~ 150 (448)
T COG1322 111 ANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQ 150 (448)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567788888888999988866544 45555554
No 181
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.02 E-value=1.9e+02 Score=20.40 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
.-|.++....+.--+..-++++...+|+++|-+
T Consensus 84 ~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 84 DQLEEKKETLEKEIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444445555555555544
No 182
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=30.89 E-value=1.3e+02 Score=20.17 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 035166 2 TAFVQNLLQQMQSRFQTMS--ESIIAKI 27 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS--~~I~~ri 27 (71)
+.++++||++|+.+....+ +.++.|+
T Consensus 57 ~~l~~~ll~~Lq~~~~~~~~~~~fl~~~ 84 (124)
T PF02865_consen 57 SVLFQNLLQELQQQASRQSQEDNFLLQH 84 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 4688999999999987765 4666554
No 183
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=30.84 E-value=1.6e+02 Score=19.44 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 14 SRFQTMSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 14 ~kFq~MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
+++..|=..+...+..--..||+||+.|.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56667777777777778899999999884
No 184
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=30.70 E-value=1.6e+02 Score=19.36 Aligned_cols=36 Identities=22% Similarity=0.510 Sum_probs=29.6
Q ss_pred HHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 18 TMSESIIAK----------IDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 18 ~MS~~I~~r----------iDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
-|--|.+.| |+.+|.-+-.||..|.+|...-|++..
T Consensus 28 lmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~~gl~~~ 73 (88)
T PF05121_consen 28 LMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCERFGLTPE 73 (88)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 355667766 578999999999999999999998753
No 185
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=30.69 E-value=1.9e+02 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=17.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~ 46 (71)
.||.....||..+++.|..|..
T Consensus 50 ~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 50 ERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888999999999988853
No 186
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=30.68 E-value=2.8e+02 Score=22.79 Aligned_cols=46 Identities=9% Similarity=0.345 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccC
Q 035166 6 QNLLQQMQSRFQT------MSESIIAKIDEMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 6 q~LLqqmQ~kFq~------MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e 51 (71)
..+..+|...|.. .-+.|+.+|-++..||..+|+.|..+...+|+.
T Consensus 253 ~~~r~~i~~~l~~lkL~~k~id~Lv~~lr~~~~rIr~~Er~i~~~~~~~~m~ 304 (619)
T PRK05658 253 AKLREKLKEELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVERLKMP 304 (619)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445566666553 345667778899999999999999977787765
No 187
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.28 E-value=1.2e+02 Score=17.75 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHH
Q 035166 7 NLLQQMQSRFQTMS----ESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS----~~I~~riDdMg~RIDdLEks 40 (71)
++|+||.--.+.+. .++.+||-..-+.++.|.+.
T Consensus 39 ~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 39 ELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 23334444444444444443
No 188
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.12 E-value=1.5e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.504 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI 41 (71)
.+.+.++.++-.+||+|++.|
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 189
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.96 E-value=1.5e+02 Score=22.68 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 035166 27 IDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~q 47 (71)
|--|+.+|.+||+.|.-|-..
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 677999999999999988764
No 190
>KOG1106 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.91 E-value=1.7e+02 Score=21.53 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHH--HH--HHHhhhHHHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIA--KI--DEMGSRIDELEQSIN 42 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~--ri--DdMg~RIDdLEksI~ 42 (71)
+.+-+-.|++...+.+.+ .+ -.-..|+|++|++|-
T Consensus 122 ~se~l~~R~~~~l~~~~s~~~~~~s~~~~rLD~~E~~l~ 160 (177)
T KOG1106|consen 122 LSETLRSRVREILDSSLSATNTQTSKFVERLDEMERKLF 160 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766 32 456678889998874
No 191
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.79 E-value=2.5e+02 Score=21.38 Aligned_cols=17 Identities=47% Similarity=0.542 Sum_probs=12.9
Q ss_pred HHHhhhHHHHHHHHHHH
Q 035166 28 DEMGSRIDELEQSINDL 44 (71)
Q Consensus 28 DdMg~RIDdLEksI~dL 44 (71)
||.-..+|+||+.-.|.
T Consensus 160 DEL~~ELdeLeqeeld~ 176 (221)
T KOG1656|consen 160 DELMAELDELEQEELDK 176 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888899998765543
No 192
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=29.47 E-value=1.3e+02 Score=21.01 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKI-DEMGSRIDELEQSINDLR 45 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~ri-DdMg~RIDdLEksI~dLm 45 (71)
|+++|+++.+..........+-. ++-..|++++=+.|.+++
T Consensus 98 VEGlL~~i~~~L~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~ 139 (160)
T smart00709 98 VEGLLSRVREVLSQAIQETRDDSDPETKEKIDEFLEKLKELI 139 (160)
T ss_pred hHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 67888888777766532221111 223345555555555555
No 193
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.34 E-value=1.9e+02 Score=25.02 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
=|++++.+.+++-++...|+.. ++++...|.+|+...|++-.
T Consensus 161 kLeelr~~L~~L~~ek~~Rlek----v~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 161 KLEELREHLNELQKEKSDRLEK----VLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcc
Confidence 3778888888888888888865 57788899999999998755
No 194
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.34 E-value=2e+02 Score=24.16 Aligned_cols=42 Identities=10% Similarity=0.284 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++.+..+++.+-..+-..|...-.+|+.|=++|++|-.+...
T Consensus 144 fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~ 185 (651)
T PRK06945 144 FNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAK 185 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666677778888888888888888888777643
No 195
>PF05842 Euplotes_phero: Euplotes octocarinatus mating pheromone protein; InterPro: IPR008612 This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate E. octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells [].; GO: 0005186 pheromone activity, 0007154 cell communication, 0005576 extracellular region
Probab=29.27 E-value=50 Score=23.40 Aligned_cols=18 Identities=50% Similarity=0.654 Sum_probs=12.6
Q ss_pred ChHHHHHHH-HHHHHHHHH
Q 035166 1 MTAFVQNLL-QQMQSRFQT 18 (71)
Q Consensus 1 lT~~Vq~LL-qqmQ~kFq~ 18 (71)
||.=|.+=| .|+|.|||.
T Consensus 3 MTSKVNTKLQSqiqSKfqS 21 (134)
T PF05842_consen 3 MTSKVNTKLQSQIQSKFQS 21 (134)
T ss_pred chhhhhHHHHHHHHHHHhh
Confidence 456666544 589999984
No 196
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.20 E-value=2.2e+02 Score=22.89 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++++...++.+-..+-..|+..-.+|+.|=++|++|-.+...
T Consensus 144 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 144 FKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666677778888888888898999988887643
No 197
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=48 Score=24.43 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhc
Q 035166 34 IDELEQSINDLRSEMG 49 (71)
Q Consensus 34 IDdLEksI~dLm~qaG 49 (71)
|+++||+|...|.-||
T Consensus 14 l~~iEkeI~~~mq~Ag 29 (180)
T KOG4057|consen 14 LVTIEKEIDEMMQCAG 29 (180)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888887776
No 198
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=29.01 E-value=1.5e+02 Score=18.43 Aligned_cols=35 Identities=11% Similarity=0.420 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSES---IIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 9 LqqmQ~kFq~MS~~---I~~riDdMg~RIDdLEksI~d 43 (71)
++.+|..|..++.+ +-.+++..+.+++.|...+..
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556555543 223344444444444444433
No 199
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=28.85 E-value=87 Score=20.98 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=14.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh
Q 035166 26 KIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~q 47 (71)
|-++.-.++++||..|.+|..+
T Consensus 106 Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 106 KEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777777654
No 200
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=28.75 E-value=1.6e+02 Score=23.37 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIA---KIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~---riDdMg~RIDdLEksI~dLm~ 46 (71)
+++.+.+||...+.|+..|-. -+--||-.|-+||+.|++|=.
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 456677888888888877653 456777788888888888744
No 201
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.69 E-value=1.9e+02 Score=19.64 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~d 43 (71)
....|++|.-.+|+++.+++.+
T Consensus 55 s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554
No 202
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.68 E-value=79 Score=20.39 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI~ 42 (71)
-..+...+.++-..+-+||++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~ 112 (112)
T cd05511 90 LELAEELLAEREEKLTQLEKNIN 112 (112)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC
Confidence 33444556677777888888874
No 203
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.66 E-value=1.2e+02 Score=22.69 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIA------KIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~------riDdMg~RIDdLEksI~dL 44 (71)
+++.+|-+.|-++...+-+ +-.+|..++|.|+..|+-+
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~i 73 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVL 73 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4677788888777777532 4577777777777766544
No 204
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=28.46 E-value=67 Score=18.46 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=12.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~q 47 (71)
+|.||+. -||.|+.+|-.+
T Consensus 19 ~r~dEV~----~L~~NL~EL~~e 37 (42)
T PF11464_consen 19 RRFDEVA----TLEENLRELQDE 37 (42)
T ss_dssp T-HHHHH----HHHHHHHHHHHH
T ss_pred cCcHHHH----HHHHHHHHHHHH
Confidence 4566643 489999988764
No 205
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.45 E-value=2.2e+02 Score=23.98 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
++.+..+++.+-..+-..|...-.+|+.|=++|++|-.+..
T Consensus 146 fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~ 186 (626)
T PRK08871 146 LNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMM 186 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666667777788888888888888888887764
No 206
>KOG3681 consensus Alpha-catenin [Extracellular structures]
Probab=28.31 E-value=1.5e+02 Score=26.51 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 4 FVQNLLQQMQSRFQ--TMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq--~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+++++|.++++.+. .-|+.+-.-||.|..|..||.+.+..-+.+
T Consensus 326 ~l~d~l~E~~~~~~~k~~~~~l~~ai~~l~kkl~dLrrqLr~a~~d 371 (835)
T KOG3681|consen 326 ALQDLLSEYQSNAGRKGRSPALELAIDQLTKKLKDLKRQLRKAATD 371 (835)
T ss_pred HHHHHHHHHHHHhhccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666442 345667777999999999999998766554
No 207
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=28.14 E-value=32 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=11.7
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dL 44 (71)
.||||+|+|+-.=-|.|.||
T Consensus 90 nkMddvSrRL~aEgKdIdeL 109 (128)
T PF15145_consen 90 NKMDDVSRRLTAEGKDIDEL 109 (128)
T ss_pred chHHHHHHHHHhccCCHHHH
Confidence 56788887754444444443
No 208
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.09 E-value=74 Score=18.22 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dL 44 (71)
+-.++++.-.++++|++.|..|
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666677777777666
No 209
>PRK06285 chorismate mutase; Provisional
Probab=27.97 E-value=97 Score=19.44 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+...|+++=..||++-..|-+|..+
T Consensus 5 ~~~~L~elR~~ID~ID~~iv~Ll~~ 29 (96)
T PRK06285 5 AEKRLNEIRKRIDEIDEQIIDLIAE 29 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777777776654
No 210
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=27.97 E-value=3.1e+02 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=18.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+++|++|..||..||+.+.+.-.
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998877654
No 211
>PHA00442 host recBCD nuclease inhibitor
Probab=27.93 E-value=91 Score=19.34 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHH--HHHhhccCC
Q 035166 27 IDEMGSRIDELEQSIND--LRSEMGIEG 52 (71)
Q Consensus 27 iDdMg~RIDdLEksI~d--Lm~qaG~e~ 52 (71)
-.||..-||.|||...= -+..+||++
T Consensus 15 wnd~q~yidsLek~~~~L~~Lea~GVDN 42 (59)
T PHA00442 15 WNDMQGYIDSLEKDNEFLKALRACGVDN 42 (59)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHcCCcc
Confidence 47899999999987653 456677765
No 212
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.90 E-value=3e+02 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=7.5
Q ss_pred HHHHhhhHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSIN 42 (71)
Q Consensus 27 iDdMg~RIDdLEksI~ 42 (71)
|.....|++.|.+.+.
T Consensus 347 ~~~~~~~l~~~~~~l~ 362 (432)
T TIGR00237 347 ILRAQTRTEQLNRRLN 362 (432)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444445555544443
No 213
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=27.90 E-value=1.5e+02 Score=18.90 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDE 36 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDd 36 (71)
.+...|...+..-...+|.++.||-+
T Consensus 38 ~~~~~f~~~a~ee~~Ha~~lae~i~~ 63 (153)
T cd00907 38 KLAERFRKESIEEMKHADKLIERILF 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556665555544
No 214
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.82 E-value=1.9e+02 Score=27.36 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTM-----------SESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~M-----------S~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.+|++++.+++.++.+= .+.|..|+-||..|+--||.+|+++=.
T Consensus 1122 ~~vE~~~r~~~~~~~~s~~Erir~t~~rvd~~~~~l~e~~~r~~~lk~~v~~~~~ 1176 (1381)
T KOG3614|consen 1122 VCVENFLRKREMEQNSSTEERIRRTANRVDLILNRLIELEQREKTLKDSVQNSET 1176 (1381)
T ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999998887654 455666666676676666666665433
No 215
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=27.69 E-value=94 Score=24.46 Aligned_cols=27 Identities=15% Similarity=0.441 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+.+-.||.|.=+|++.|+|.|.+|-.+
T Consensus 292 De~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 292 DEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 678889999999999999999988654
No 216
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.61 E-value=3.1e+02 Score=21.61 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHHHh-----hccCCCCCCCCCCC
Q 035166 9 LQQMQSRFQTMSESIIA--------------KIDEMGSRIDELEQSINDLRSE-----MGIEGSASPSLPSK 61 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~--------------riDdMg~RIDdLEksI~dLm~q-----aG~e~~~~~~~~~~ 61 (71)
+++++.+....|.+|-. ++.++..+|..||+.+.++-.+ ..+.+.+.+..|.-
T Consensus 46 ~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g 117 (418)
T TIGR00414 46 IEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVG 117 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 56677777777766532 3455666777776666555443 24556666666544
No 217
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.57 E-value=1.3e+02 Score=26.78 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+.+|.++.+-+.. ...++.|+...-.+..+|||.|..|..
T Consensus 714 ~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~ 753 (879)
T COG0013 714 EDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKK 753 (879)
T ss_pred HHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777 888899999999999999999999987
No 218
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=27.47 E-value=72 Score=19.38 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=14.5
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 035166 28 DEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 28 DdMg~RIDdLEksI~dLm~q 47 (71)
+++=.+||.|-..|-+|+.+
T Consensus 2 ~~lR~~ID~ID~~lv~Ll~~ 21 (82)
T TIGR01803 2 ADIREAIDRIDLALVQALGR 21 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888777765
No 219
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=27.21 E-value=1.1e+02 Score=20.66 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 035166 15 RFQTMSESIIAKIDEMGSRIDE 36 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDd 36 (71)
.|+.++..++.-+|+.+.+|+.
T Consensus 38 ~F~~iv~~~~~~~~~~A~~VE~ 59 (120)
T PF14931_consen 38 EFQKIVKGFIEILDELAKRVEN 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998888853
No 220
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=27.19 E-value=46 Score=24.86 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI 41 (71)
..+.|+.+|-+|+.+|||.+
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~ 340 (343)
T PRK00892 321 ARLRRLDELRKRLKALEKKV 340 (343)
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 56889999999999999964
No 221
>PF14071 YlbD_coat: Putative coat protein
Probab=27.16 E-value=73 Score=22.06 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=16.0
Q ss_pred HHHhhhHHHHHHHH---HHHHHhhccCCC
Q 035166 28 DEMGSRIDELEQSI---NDLRSEMGIEGS 53 (71)
Q Consensus 28 DdMg~RIDdLEksI---~dLm~qaG~e~~ 53 (71)
++|..-|+.+.+.| +.++.+..-...
T Consensus 80 nq~q~hl~~~sqai~~vQ~~l~qFq~~~~ 108 (124)
T PF14071_consen 80 NQMQKHLNNVSQAIGSVQQVLSQFQGNGQ 108 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56777777776654 556766654443
No 222
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.06 E-value=97 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 035166 13 QSRFQTMSESIIAKIDEMGSR 33 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~R 33 (71)
+.-|.+++.+...|++.|.-.
T Consensus 34 dee~~~L~s~~~~kLe~ma~~ 54 (61)
T PF07131_consen 34 DEEFHTLSSQLSQKLERMAAE 54 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999753
No 223
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.04 E-value=2e+02 Score=19.31 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dL 44 (71)
++..+++.+..+|..||+.+..|
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L 100 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQL 100 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555
No 224
>PRK07737 fliD flagellar capping protein; Validated
Probab=27.00 E-value=2.2e+02 Score=23.04 Aligned_cols=21 Identities=10% Similarity=0.442 Sum_probs=12.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dL 44 (71)
-.+|+.+-.||++||..|.+.
T Consensus 447 ~~~i~~l~~~i~~~~~rl~~~ 467 (501)
T PRK07737 447 GKDLNQIETQIDRFQDRLKQI 467 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666654
No 225
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=26.97 E-value=39 Score=19.21 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=5.1
Q ss_pred HHhhhHHHHHHHHHHHHHh
Q 035166 29 EMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~q 47 (71)
-++.||-+||+.+.+|.++
T Consensus 18 ~l~~ki~~le~~~s~L~~e 36 (46)
T PF07558_consen 18 ALSIKIQELENEVSKLLNE 36 (46)
T ss_dssp ------------HHHHHHH
T ss_pred HHHhHHHHHHhHHHHHHHH
Confidence 3566788888888887764
No 226
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=26.94 E-value=2.8e+02 Score=21.01 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
+-++.+-.||++++.+|=.=+.++-+--|.|.+
T Consensus 84 ~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~ 116 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDKIIAELESGQDELLR 116 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888777664433333333333333
No 227
>PF05250 UPF0193: Uncharacterised protein family (UPF0193); InterPro: IPR007914 This family of proteins is functionally uncharacterised.
Probab=26.91 E-value=1.1e+02 Score=22.75 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=8.5
Q ss_pred HHHhhhHHHHHH
Q 035166 28 DEMGSRIDELEQ 39 (71)
Q Consensus 28 DdMg~RIDdLEk 39 (71)
.|++.||.+||.
T Consensus 185 ~EIsqrlrele~ 196 (212)
T PF05250_consen 185 TEISQRLRELEK 196 (212)
T ss_pred HHHHHHHHHHHH
Confidence 667777777764
No 228
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.89 E-value=1e+02 Score=28.49 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+=|++||++|+.|-..+--+.=+| ||.-|+.+++|++-
T Consensus 965 e~l~~Lq~k~~~l~k~vn~~~m~m---le~~E~~~~~lk~k 1002 (1174)
T KOG0933|consen 965 EELKKLQEKKEKLEKTVNPKNMDM---LERAEEKEAALKTK 1002 (1174)
T ss_pred HHHHHhhHHHHHHHhhcCHHHHHH---HHHHHHHHHHHHHH
Confidence 348899999999888777665555 55667777777654
No 229
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=26.83 E-value=2.4e+02 Score=21.13 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHHHHH-HHHHHHHHHHHHH--HHHHHhhhHHHHHHHH
Q 035166 7 NLLQQM-QSRFQTMSESIIA--KIDEMGSRIDELEQSI 41 (71)
Q Consensus 7 ~LLqqm-Q~kFq~MS~~I~~--riDdMg~RIDdLEksI 41 (71)
+||+.| ..||..|+..--. ---+|+.|+|+.=+.+
T Consensus 51 ~ll~~La~akf~~Mq~~s~~ar~aQ~mAN~VDevIA~v 88 (196)
T PRK15364 51 MVIQAIANNKFIEVQKNAERARNTQEKSNEMDEVIAKA 88 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 6788888764332 2478999998764444
No 230
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=26.54 E-value=2.1e+02 Score=19.25 Aligned_cols=37 Identities=14% Similarity=0.438 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSR----------FQTMSESIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 3 ~~Vq~LLqqmQ~k----------Fq~MS~~I~~riDdMg~RIDdLEksI~dLm 45 (71)
.++++|++.+... |+. +|+.+|+.+..++++.|..+.
T Consensus 59 ~~~~~L~~~i~~~~g~ivvyN~sfE~------~rL~ela~~~p~~~~~l~~I~ 105 (130)
T PF11074_consen 59 ELIEALIKAIGSIYGSIVVYNKSFEK------TRLKELAELFPDYAEKLNSII 105 (130)
T ss_pred HHHHHHHHHhhhhcCeEEEechHHHH------HHHHHHHHHhHHHHHHHHHHH
Confidence 4678888888877 652 355555555555555444443
No 231
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=26.44 E-value=54 Score=21.21 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCC
Q 035166 35 DELEQSINDLRSEMGIEGSASPSLP 59 (71)
Q Consensus 35 DdLEksI~dLm~qaG~e~~~~~~~~ 59 (71)
++||+-+..|..+.+.+..+....|
T Consensus 140 ~ele~eL~~l~~e~~~~~~~~~~lp 164 (171)
T PF03357_consen 140 EELEEELEQLEDEIEEEEEEKQQLP 164 (171)
T ss_dssp TSTTCHHHHHHHCCCTTS--SS-SS
T ss_pred HHHHHHHHHHHHHHhhhhhccccCC
Confidence 3567777788877777664333333
No 232
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=26.43 E-value=1.4e+02 Score=21.07 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 035166 16 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 57 (71)
Q Consensus 16 Fq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~ 57 (71)
|..+...+..++..=...--+.+..+..+....|++.+.+..
T Consensus 38 ~~~~l~~fa~k~~~~i~~~~~~r~~f~~~~~~lGvdp~~s~~ 79 (223)
T PF04157_consen 38 FVELLENFARKHKSEIKSDPEFRSQFQSMCASLGVDPLASSK 79 (223)
T ss_dssp HHHHHHHHHHHHCCCCCCSHHHHHHHHHHHHHHT--CHCCTT
T ss_pred HHHHHHHHHHHhhccccCCchHHHHHHHHHHHcCCCcccchh
Confidence 667777777777666666667778899999999999865543
No 233
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.35 E-value=2e+02 Score=21.80 Aligned_cols=50 Identities=26% Similarity=0.427 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHhhccCCCCCC
Q 035166 7 NLLQQMQSRFQTMSESIIAKID-----------EMGSRIDELEQSINDLRSEMGIEGSASP 56 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riD-----------dMg~RIDdLEksI~dLm~qaG~e~~~~~ 56 (71)
++|.....-|..++.+|-++|- ++-+.||..=.++++|+.|+++|.-..|
T Consensus 3 ~~fe~yEqqy~~l~a~it~k~~~~~~~~~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp 63 (220)
T KOG1666|consen 3 SLFEGYEQQYRELSAEITKKIGRALSLPGSEKKQLLSEIDSKLEEANELLDQMDLEVRELP 63 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 5677888889999999998874 3455677777788999999998865543
No 234
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.12 E-value=1.6e+02 Score=19.76 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 035166 36 ELEQSINDLR 45 (71)
Q Consensus 36 dLEksI~dLm 45 (71)
+|.+.|.+|+
T Consensus 26 ~LK~~~~el~ 35 (110)
T PRK13169 26 ALKKQLAELL 35 (110)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 235
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=25.98 E-value=59 Score=22.84 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhcc
Q 035166 34 IDELEQSINDLRSEMGI 50 (71)
Q Consensus 34 IDdLEksI~dLm~qaG~ 50 (71)
||.|=|++-|-|+.+|+
T Consensus 84 lDNl~K~l~Daltk~g~ 100 (132)
T COG4570 84 LDNLLKALLDALTKAGV 100 (132)
T ss_pred HHHHHHHHHHHHhhcce
Confidence 89999999999999996
No 236
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.92 E-value=3e+02 Score=21.02 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=22.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhc
Q 035166 27 IDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG 49 (71)
|++|...|..|++.|..|..+++
T Consensus 202 i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 202 IDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999998
No 237
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=25.85 E-value=1.3e+02 Score=17.43 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=13.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhh
Q 035166 26 KIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~qa 48 (71)
-+|..-..+++++..|.++..+.
T Consensus 5 ~Ld~~~~~~~~~~~~l~~~~~~~ 27 (92)
T PF05190_consen 5 ELDELREEYEEIEEELEELLEEI 27 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666555443
No 238
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=25.74 E-value=1.8e+02 Score=18.41 Aligned_cols=29 Identities=38% Similarity=0.491 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 16 FQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 16 Fq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
++..-+.+..++.++-..|.++++++.-|
T Consensus 11 l~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 11 LQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556666777888888888887665
No 239
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.59 E-value=2.9e+02 Score=21.83 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
++++...++.+-..+-..|+..-.+|+.|=++|++|-.+.-.
T Consensus 143 ~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 143 FNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666677777777888888888888888877643
No 240
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=25.45 E-value=2.8e+02 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=20.6
Q ss_pred HHHHHHhhh---HHHHHHHHHHHHHhhccCC
Q 035166 25 AKIDEMGSR---IDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 25 ~riDdMg~R---IDdLEksI~dLm~qaG~e~ 52 (71)
.+++++... |..||..|+.++.+++--+
T Consensus 112 e~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG 142 (319)
T KOG0796|consen 112 ERSEEAARKAEKVHELEEKIGKLLEKAEELG 142 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555 9999999999998876443
No 241
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=25.44 E-value=1.1e+02 Score=16.25 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+..++++++-|-.++...+.+.=.... .++|.-|..|+.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~--~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANN--GDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTT--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcC--CCHHHHHHHHHc
Confidence 456889999999999988866532222 356666666654
No 242
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=25.41 E-value=2.2e+02 Score=20.60 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 9 LQQMQSRFQTMSESII----------AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~----------~riDdMg~RIDdLEksI~dLm~q 47 (71)
|+++-+|....++++= .-+-++-+.|..||++|-+|+.-
T Consensus 46 id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~l 94 (157)
T COG3352 46 IDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSL 94 (157)
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444432 22456667788888888888764
No 243
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=25.28 E-value=2.2e+02 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.518 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+-.|=|++..||+-||..+.+|-.
T Consensus 439 l~~~q~~le~qI~~Le~kl~~l~~ 462 (489)
T KOG3684|consen 439 LHSRQEELEKQIDTLESKLEALTA 462 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777777654
No 244
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.11 E-value=3.5e+02 Score=24.13 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
.+.+...++.+-..+..+|-.+-.+...++++||+-...=+...||+.
T Consensus 723 ~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 723 WQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 455566666666777777888888888888888888888778888874
No 245
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=24.98 E-value=2.7e+02 Score=23.52 Aligned_cols=40 Identities=8% Similarity=0.317 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
++.+..+++.+-..+-..|..--.+|+.|=++|++|-.+.
T Consensus 143 fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN~qI 182 (649)
T PRK12715 143 FNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNGKL 182 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666677778888888888888888888876
No 246
>PRK02119 hypothetical protein; Provisional
Probab=24.97 E-value=1.5e+02 Score=18.12 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=15.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhhcc
Q 035166 28 DEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 28 DdMg~RIDdLEksI~dLm~qaG~ 50 (71)
=+-...||.|++.+.-|..+.+-
T Consensus 33 ~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 33 IEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456678888888888776543
No 247
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=24.94 E-value=79 Score=21.72 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 57 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~ 57 (71)
-|.+|+-++++|..-. .+++++-.-+.+|=..|..-|...+....++|.
T Consensus 66 yq~lL~~l~~~~~~~~----~~v~~Lq~~~~~L~~~i~~~~~~~~~~~~~~P~ 114 (154)
T PF00489_consen 66 YQILLKYLQGEFPGLK----ENVESLQLDTKDLAQTIKQKMKNPDEVTTPSPT 114 (154)
T ss_dssp HHHHHHHTTTSSTTTH----HHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSHC
T ss_pred HHHHHHHHHhhCccch----hHHHHHHHHHHHHHHHHHHHhhccccccCCCCc
Confidence 3556666666666533 445666666777777777777776666666555
No 248
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=24.85 E-value=1.1e+02 Score=21.41 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhcc
Q 035166 36 ELEQSINDLRSEMGI 50 (71)
Q Consensus 36 dLEksI~dLm~qaG~ 50 (71)
.||-+...|...||-
T Consensus 86 rlE~~~r~Lr~sa~~ 100 (126)
T smart00808 86 RLELQLRELRISAGS 100 (126)
T ss_pred HHHHHHHHHHhhccC
Confidence 345566666554544
No 249
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=24.58 E-value=1e+02 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=6.8
Q ss_pred HHHHhhhHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSI 41 (71)
Q Consensus 27 iDdMg~RIDdLEksI 41 (71)
+++...++|+||..+
T Consensus 151 l~~l~~~~~~le~~l 165 (318)
T TIGR00383 151 LENIEDELEELEDEI 165 (318)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 250
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=24.57 E-value=2.7e+02 Score=20.48 Aligned_cols=37 Identities=16% Similarity=0.446 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
-|+.+|.++.+.|..+-+. .-+.-.||++|++.|...
T Consensus 27 EVdeFLD~V~~dye~~l~e----~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 27 EVDEFLDDVIDDYEQLLDE----NEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4888999999998876533 334455566666655543
No 251
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=24.47 E-value=2.4e+02 Score=19.37 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESII 24 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~ 24 (71)
.|+.|++||..+-.+--
T Consensus 25 ~Lee~~ekl~~vv~er~ 41 (135)
T PRK10947 25 TLEEMLEKLEVVVNERR 41 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888888887654433
No 252
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.46 E-value=1.8e+02 Score=17.96 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=8.6
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dL 44 (71)
.|++.+...++.|++.+..+
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~ 103 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAEL 103 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 253
>PHA02557 22 prohead core protein; Provisional
Probab=24.39 E-value=3.2e+02 Score=21.33 Aligned_cols=42 Identities=26% Similarity=0.501 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 6 QNLLQQMQSRFQ----TMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 6 q~LLqqmQ~kFq----~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+.+|..|.+=|- +..++-++-+++|-.+||+.|.-++++...
T Consensus 118 Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~e 163 (271)
T PHA02557 118 ESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEE 163 (271)
T ss_pred HHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 344444455666666666666666666543
No 254
>PHA03332 membrane glycoprotein; Provisional
Probab=24.34 E-value=1.5e+02 Score=27.69 Aligned_cols=41 Identities=10% Similarity=0.308 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
+-+++=+.....|-..+.+++-.|++.+.++|+.|-..+.+
T Consensus 926 atl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~ 966 (1328)
T PHA03332 926 ATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKE 966 (1328)
T ss_pred HHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444445555556666666666666666655544333
No 255
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.28 E-value=2e+02 Score=21.22 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESII---AKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~---~riDdMg~RIDdLEksI~d 43 (71)
+-+||.+.+.|..+|- |.|+++.-.|+.|.+.=.|
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4467777777766653 5666666666666654444
No 256
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=24.24 E-value=1.5e+02 Score=17.56 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=21.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 27 IDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
.+|+-.+|.+|.+.+-+|.-+.....+
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~~~~~ 37 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKATGQL 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 478888899999999999877765543
No 257
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=24.17 E-value=1.2e+02 Score=23.93 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 035166 2 TAFVQNLLQQMQSRFQTMSESIIAK 26 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~~I~~r 26 (71)
-.++..|++|+|+-|..+..++-.|
T Consensus 225 ~qL~~~L~~qIq~vfeeLt~~vQEK 249 (285)
T PF06937_consen 225 KQLNEKLLQQIQDVFEELTQQVQEK 249 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999998887665
No 258
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=24.09 E-value=2.6e+02 Score=20.99 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
.|+...+.+....+.|....-++|.|+..||.
T Consensus 228 ~l~~a~~~id~~~~~v~~~~a~vGar~n~le~ 259 (317)
T PRK08027 228 ALDKTNRGLKNSLNNVLTVRAELGTQLNELES 259 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666677777788888888773
No 259
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=24.08 E-value=2.7e+02 Score=20.06 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
.|..+...+..-+.++....+.+..++.++|.--+
T Consensus 94 e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~ 128 (214)
T PF04344_consen 94 EFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQD 128 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 46667777777788888888888888888876543
No 260
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=24.01 E-value=97 Score=19.08 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=14.6
Q ss_pred HHHH-HHHHHHHHHHHHHHhh
Q 035166 13 QSRF-QTMSESIIAKIDEMGS 32 (71)
Q Consensus 13 Q~kF-q~MS~~I~~riDdMg~ 32 (71)
|+|| |.|-...-.||..+|.
T Consensus 35 ~~kfnqem~aefheri~klgg 55 (59)
T PF07384_consen 35 QNKFNQEMQAEFHERIKKLGG 55 (59)
T ss_pred hhHhhHHHHHHHHHHHHHhcc
Confidence 6677 6787777778877664
No 261
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=23.96 E-value=1.6e+02 Score=16.97 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhccCCCC
Q 035166 27 IDEMGSRIDELEQSINDLRSEMGIEGSA 54 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG~e~~~ 54 (71)
.+|+..+|.+|.+.+-+|.-+...-.+.
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~ 34 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLA 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4788888999999999998776655544
No 262
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=23.96 E-value=1.6e+02 Score=20.90 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 035166 29 EMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~qa 48 (71)
.+..|+++.+.....|+.++
T Consensus 14 ~L~~rL~~~d~~ad~Ll~qa 33 (181)
T PF05769_consen 14 RLVERLKDHDNAADSLLSQA 33 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444443
No 263
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.80 E-value=3.3e+02 Score=21.51 Aligned_cols=41 Identities=12% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
++.+...++.+-..+-..|+..-.+|+.|=+.|++|-.+..
T Consensus 148 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 188 (431)
T PRK06799 148 LNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIG 188 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666777777777777777777766653
No 264
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.77 E-value=3.2e+02 Score=20.47 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=4.2
Q ss_pred HHHhhhHHHH
Q 035166 28 DEMGSRIDEL 37 (71)
Q Consensus 28 DdMg~RIDdL 37 (71)
.+|++.+.+|
T Consensus 51 ~~l~~~~~~L 60 (304)
T PF02646_consen 51 QQLSQEASNL 60 (304)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 265
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=2.8e+02 Score=24.23 Aligned_cols=39 Identities=38% Similarity=0.654 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMG---SRIDELEQSIND 43 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg---~RIDdLEksI~d 43 (71)
.|++...+|.+|-+||.+|..-+|-.+ ++.++|+..+.+
T Consensus 60 Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~ 101 (698)
T KOG0978|consen 60 LQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLED 101 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Confidence 577888999999999998876554443 344444444443
No 266
>PRK07857 hypothetical protein; Provisional
Probab=23.65 E-value=1.3e+02 Score=20.14 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=17.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~q 47 (71)
..|+++=..||.|-+.|-+|+++
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~e 50 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKR 50 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888765
No 267
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.64 E-value=2e+02 Score=23.46 Aligned_cols=37 Identities=16% Similarity=0.553 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm 45 (71)
..++.++|+.+-..++..=..-|.-++.||+.+.++=
T Consensus 138 i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie 174 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIE 174 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHH
Confidence 4567788888888888887777777777777776653
No 268
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.63 E-value=2e+02 Score=18.12 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhhHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESII-----------------AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~-----------------~riDdMg~RIDdLEksI~dL 44 (71)
+..||.++..-|.+++..+. .-|+.+-..|-+||..-..+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877332 33555566677776654443
No 269
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.63 E-value=2.1e+02 Score=19.79 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=25.2
Q ss_pred HHHHHHhhhHHHH--------------HHHHHHHHHhhccCCCCCCCCC
Q 035166 25 AKIDEMGSRIDEL--------------EQSINDLRSEMGIEGSASPSLP 59 (71)
Q Consensus 25 ~riDdMg~RIDdL--------------EksI~dLm~qaG~e~~~~~~~~ 59 (71)
.-+||+|.|+|.. =+-|..||....|=....|+++
T Consensus 70 nTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQst~ps~~ 118 (120)
T KOG3650|consen 70 NTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTDPSSK 118 (120)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhcCCCccc
Confidence 3478888888864 3457888888888777777643
No 270
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=23.53 E-value=3.4e+02 Score=22.07 Aligned_cols=33 Identities=12% Similarity=0.379 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI 41 (71)
+.++...|..|.+.+-..++++..++.+..+.+
T Consensus 352 i~~L~~~~n~m~~~l~~~~~~l~~~~~e~~~~l 384 (921)
T PRK15347 352 LGSIAKAYNQLLDTLNEQYDTLENKVAERTQAL 384 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777766666665555444333
No 271
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=23.52 E-value=3e+02 Score=20.10 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
++.+.+.++.+.++.+..+-++-...+++=+.+.+.+++
T Consensus 256 ~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~ 294 (306)
T PF04888_consen 256 LQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQ 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444455555555554444
No 272
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.48 E-value=4.2e+02 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=16.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhh
Q 035166 26 KIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~qa 48 (71)
.++....+|++++++|..|-.|-
T Consensus 88 ~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 88 DLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 35677788888888888776553
No 273
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=23.48 E-value=1.6e+02 Score=21.54 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
.....-+|+.=|+.+|+.|+.++.+..
T Consensus 35 ~~~~~~~m~~i~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 35 LHKENQEMRKIMEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999998754
No 274
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=23.46 E-value=3.3e+02 Score=22.04 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
+.++...|..|.+++...+.++...++++..
T Consensus 233 i~~L~~~~n~m~~~l~~~~~~l~~~~~~~~~ 263 (919)
T PRK11107 233 LDMLKNGINAMAMSLSAYHEEMQQNIDQATS 263 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777666666666555554433
No 275
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=23.08 E-value=2.6e+02 Score=19.32 Aligned_cols=32 Identities=31% Similarity=0.374 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH-HHHhhhHHHHH--HHHHHHHHh
Q 035166 16 FQTMSESIIAKI-DEMGSRIDELE--QSINDLRSE 47 (71)
Q Consensus 16 Fq~MS~~I~~ri-DdMg~RIDdLE--ksI~dLm~q 47 (71)
|++--..|..|| -||+.+||+-| |.|-|....
T Consensus 35 ~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 35 DQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 334445566665 78999999997 767666654
No 276
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.05 E-value=3.3e+02 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 035166 32 SRIDELEQSINDLRSEMG 49 (71)
Q Consensus 32 ~RIDdLEksI~dLm~qaG 49 (71)
.|||+||.-+.|++...|
T Consensus 86 ~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 86 EKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666666655
No 277
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.96 E-value=3.9e+02 Score=22.19 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIA 25 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~ 25 (71)
.++..=++|...|+.++..|+.
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile 124 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFE 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556778888888888874
No 278
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.77 E-value=2.3e+02 Score=18.57 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhhcc
Q 035166 6 QNLLQQMQSRFQTMSESI---IAKIDEMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I---~~riDdMg~RIDdLEksI~dLm~qaG~ 50 (71)
..+...+..|.......| -.+.+.+-.++.+++.+|.+++.+.+.
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555566655544332 233455666666666777777666543
No 279
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=22.77 E-value=3e+02 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDE 36 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDd 36 (71)
.+|-.-|+.|++++-.-+.++..|+.+
T Consensus 181 g~L~~~~n~M~~~L~~~~~~l~~~~~~ 207 (569)
T PRK10600 181 AMLGTALNNMSAELAESYAVLEQRVQE 207 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554443
No 280
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=22.70 E-value=2.4e+02 Score=20.00 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 17 QTMSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 17 q~MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
..-.+.+-.+++..-.||++||+.+..
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~ 218 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLES 218 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444
No 281
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=22.54 E-value=2.6e+02 Score=19.09 Aligned_cols=37 Identities=22% Similarity=0.467 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.+.+-++.+.+.+-.++|-.+.-|+.||..+.-+-++
T Consensus 26 ~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E 62 (162)
T PF05565_consen 26 AIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAE 62 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456677788889999999999999999888766554
No 282
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=22.47 E-value=2.8e+02 Score=21.55 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=11.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm 45 (71)
..-|.+|..-|..||+.|.|-.
T Consensus 271 ~~ei~~~e~~i~~L~~ai~~k~ 292 (384)
T PF03148_consen 271 LQEIAEMEKNIEDLEKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555543
No 283
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=22.44 E-value=1.6e+02 Score=18.87 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~q 47 (71)
..|+++=.+||+|-..|-+|+++
T Consensus 8 ~~L~~lR~~ID~ID~~iv~LL~e 30 (101)
T PRK07075 8 TGLDDIREAIDRLDRDIIAALGR 30 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888899988888888765
No 284
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.40 E-value=2.2e+02 Score=18.13 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhHHHHH-------HHHHHHHHhhccCCCCCCCC
Q 035166 23 IIAKIDEMGSRIDELE-------QSINDLRSEMGIEGSASPSL 58 (71)
Q Consensus 23 I~~riDdMg~RIDdLE-------ksI~dLm~qaG~e~~~~~~~ 58 (71)
++.|+|+.-..-+.|+ .-|..||+..-+-.+.++.+
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~s~~~~~ 77 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQSTSPKS 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccc
Confidence 4556666655555544 56999999888877766653
No 285
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=22.29 E-value=96 Score=16.48 Aligned_cols=39 Identities=23% Similarity=0.458 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+..++++++-|=.++..++.+.=.-.+ .++|.-|+.|..
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~--g~ve~~i~~LL~ 41 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANN--GNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcC--CCHHHHHHHHHc
Confidence 567888999999999998876543322 567777776653
No 286
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=22.19 E-value=1.3e+02 Score=20.03 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=15.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 035166 27 IDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qa 48 (71)
++=.++|||-..+||.-|-.+.
T Consensus 70 v~~l~RRiDYV~~Ni~tleKql 91 (99)
T PF13758_consen 70 VDVLSRRIDYVQQNIETLEKQL 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888877776554
No 287
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.15 E-value=3.5e+02 Score=22.40 Aligned_cols=25 Identities=8% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 24 IAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
...++.+|.+|+..-++.+..+...
T Consensus 386 ~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 386 VDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999998888888866544
No 288
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....
Probab=22.08 E-value=2.3e+02 Score=18.36 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKI---DEMGSRIDELEQSI 41 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~ri---DdMg~RIDdLEksI 41 (71)
.-+..+.++|..+|..+..-| ++...|..-|++=|
T Consensus 44 ~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~~I 81 (188)
T PF00617_consen 44 PNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEKFI 81 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 458889999999998888776 56778887777644
No 289
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=22.02 E-value=30 Score=23.07 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+-.-+++.+..+.+|++.+.+|+.+
T Consensus 50 ~~~~l~~a~~~v~~L~~~~~~L~~k 74 (138)
T PF06009_consen 50 ANKALDDANNSVKNLEQLAPDLLDK 74 (138)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777765
No 290
>PRK00708 sec-independent translocase; Provisional
Probab=22.01 E-value=3.4e+02 Score=20.24 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 035166 13 QSRFQTMSESIIAKI 27 (71)
Q Consensus 13 Q~kFq~MS~~I~~ri 27 (71)
-.+|..|.+.+-.-+
T Consensus 36 v~k~R~~a~e~r~~~ 50 (209)
T PRK00708 36 TARMRKMAGEFRRQF 50 (209)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 291
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=21.90 E-value=3.2e+02 Score=19.78 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDE-MGSRIDELEQSINDLRS 46 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDd-Mg~RIDdLEksI~dLm~ 46 (71)
+..++.||..||..|..-|.- ...|+.|+-..|.+.+.
T Consensus 141 ~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe 179 (199)
T cd07626 141 LEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQ 179 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999999877643 36677777666666554
No 292
>TIGR01013 2a58 Phosphate:Na+ Symporter (PNaS) Family.
Probab=21.70 E-value=2.1e+02 Score=22.38 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
.|...++....=|..-......|+-+...+||+||+.+.+-
T Consensus 386 ~v~~~f~~a~~~l~~~~~~~a~~lv~~~~~i~~l~~~~~~~ 426 (456)
T TIGR01013 386 YLVLNFLLAPSLLFGLDLNLARRLVGVKIPFRILELFSSLL 426 (456)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444455555555555566777888888899998877664
No 293
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.54 E-value=3.9e+02 Score=20.72 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.+....+.|+.-++..-..+-.||.++-.--++||-.+...+.+
T Consensus 230 ~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~e 273 (384)
T PF03148_consen 230 ILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQE 273 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44556677788888888888889888877777776666655544
No 294
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=21.47 E-value=2e+02 Score=19.71 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHHh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAK------IDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~r------iDdMg~RIDdLEksI~dLm~q 47 (71)
-+..|++.+.||+.+-+.--|. +--+|+ |||--|..|...
T Consensus 40 ~~~~l~kVy~~F~eLVe~~~G~~LtdYnLRrIGS---dLE~~iR~LLq~ 85 (108)
T PF10664_consen 40 NEEALQKVYRKFDELVESYAGEDLTDYNLRRIGS---DLEHFIRSLLQA 85 (108)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCchhhhHHHhcc---HHHHHHHHHHHC
Confidence 3567999999999876655443 233455 899999998864
No 295
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.46 E-value=1.4e+02 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
++..||...-+.+-.+|..-|.+|+|+
T Consensus 2 ~~~~~~~~~~d~lq~~i~~as~~lNd~ 28 (207)
T PF05546_consen 2 QLSKKLSFYMDSLQETIFTASQALNDV 28 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888888888887765
No 296
>PHA02675 ORF104 fusion protein; Provisional
Probab=21.44 E-value=2.6e+02 Score=18.63 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+.=|-.+-..|++ |+..--..+.|||-||..+.-|..
T Consensus 36 e~RL~~L~k~~~~----i~~cC~~~~~~L~RLE~H~ETLRk 72 (90)
T PHA02675 36 EERLVSLLDSYKT----ITDCCRETGARLDRLERHLETLRE 72 (90)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566665 444455677788888887776654
No 297
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=21.43 E-value=69 Score=19.66 Aligned_cols=14 Identities=43% Similarity=0.603 Sum_probs=10.6
Q ss_pred HHHhhhHHHHHHHH
Q 035166 28 DEMGSRIDELEQSI 41 (71)
Q Consensus 28 DdMg~RIDdLEksI 41 (71)
.+-|.|||.|++..
T Consensus 42 aeAs~rId~L~~~~ 55 (57)
T PF11272_consen 42 AEASERIDELQAQT 55 (57)
T ss_pred HHHHHHHHHHHHHh
Confidence 45788999998753
No 298
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.35 E-value=77 Score=20.94 Aligned_cols=27 Identities=37% Similarity=0.414 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
|..|-.++--.++|+|+|=-.|+..+-
T Consensus 30 SgsiS~kLS~l~sr~DeLFl~iQQvvy 56 (87)
T PF07436_consen 30 SGSISRKLSSLSSRFDELFLKIQQVVY 56 (87)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 567888899999999999888887664
No 299
>PF06037 DUF922: Bacterial protein of unknown function (DUF922); InterPro: IPR010321 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.34 E-value=1.7e+02 Score=20.20 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
++|+..+....+.++.+.++-..+.|..|.
T Consensus 121 ~~l~~~~~~~~~~~l~~~~~~q~~fDr~E~ 150 (161)
T PF06037_consen 121 QKLRAEANRRTDAILARHRQRQRDFDRVEQ 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 567888999999999999999999998874
No 300
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.31 E-value=2.2e+02 Score=17.77 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
.+..+++++-.+|.+|++...-|-.-+
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 101 (102)
T cd04789 75 LLLERLSSLAEQIARKQQARDLLAALL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566777777777777666555443
No 301
>PHA03030 hypothetical protein; Provisional
Probab=21.26 E-value=2.9e+02 Score=19.18 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHhhccC
Q 035166 31 GSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 31 g~RIDdLEksI~dLm~qaG~e 51 (71)
-+||.+.|.+|..+..+..-.
T Consensus 65 eTRikeiEeeieniiSeLndk 85 (122)
T PHA03030 65 ETRIKEIEEEIENIISELNDK 85 (122)
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 689999999999999877643
No 302
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=21.20 E-value=3.1e+02 Score=19.46 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEM-GSRIDELEQSINDLRS 46 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdM-g~RIDdLEksI~dLm~ 46 (71)
+.-.++.+.+|+.||..|-.-|... ..|+.|+-.+|...+.
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le 203 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLE 203 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999887666555 5667777666665544
No 303
>PHA01750 hypothetical protein
Probab=21.11 E-value=2.4e+02 Score=18.15 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+...|.+.--|+|+||+.|-|+...
T Consensus 47 L~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 47 LKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3345677778888899888887653
No 304
>PF15328 GCOM2: Putative GRINL1B complex locus protein 2
Probab=21.05 E-value=73 Score=23.08 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~d 43 (71)
..+++++.|||.||-++=..|-.
T Consensus 12 kkfi~kLpDKGkKI~~~~~kL~~ 34 (223)
T PF15328_consen 12 KKFICKLPDKGKKIQDFVEKLKA 34 (223)
T ss_pred hhhhhcCCchhHHHHHHHHHHHH
Confidence 45678888888888776444433
No 305
>PF02024 Leptin: Leptin; InterPro: IPR000065 Leptin, a metabolic monitor of food intake and energy need, is expressed by the ob obesity gene. The protein may function as part of a signalling pathway from adipose tissue that acts to regulate the size of the body fat depot [], the hormone effectively turning the brain's appetite message off when it senses that the body is satiated. Obese humans have high levels of the protein, suggesting a similarity to type II (adult onset) diabetes, in which sufferers over-produce insulin, but can't respond to it metabolically - they have become insulin resistant. Similarly, it is thought that obese individuals may be leptin resistant.; GO: 0005179 hormone activity, 0007165 signal transduction, 0005576 extracellular region; PDB: 1AX8_A.
Probab=20.90 E-value=1.5e+02 Score=21.19 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSR 33 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~R 33 (71)
.+.+|+.-.++...|+.||.+.+..
T Consensus 3 i~kvqdd~K~L~kTII~RI~~~~~~ 27 (146)
T PF02024_consen 3 IQKVQDDTKTLIKTIITRINDHSHQ 27 (146)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3678888888899999999887653
No 306
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.79 E-value=2.9e+02 Score=19.29 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=10.8
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 035166 26 KIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm 45 (71)
.|+++..|+..|++-++.+-
T Consensus 116 ~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 116 ALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 307
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=20.75 E-value=2.1e+02 Score=17.65 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=8.1
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 035166 29 EMGSRIDELEQSINDLRS 46 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~ 46 (71)
++-.||++|...+.+.+.
T Consensus 40 eL~~ri~~lr~~ld~~~~ 57 (71)
T PF08663_consen 40 ELEDRIEELRAELDDTLD 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 308
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.71 E-value=1.1e+02 Score=17.31 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=12.3
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDL 44 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dL 44 (71)
+-...+++..+|+.++.|
T Consensus 50 ~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455666777777777654
No 309
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=20.64 E-value=98 Score=17.58 Aligned_cols=15 Identities=13% Similarity=0.534 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTM 19 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~M 19 (71)
++.|+.++++||..+
T Consensus 23 Ldel~r~l~~kl~~~ 37 (42)
T PF12221_consen 23 LDELFRKLQDKLGGL 37 (42)
T ss_pred HHHHHHHHHHHHhcc
Confidence 466778888887653
No 310
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.63 E-value=3e+02 Score=19.01 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
+++++.++.|...-..+....+.....|.+.=.-+.+++..+|
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~a~~~~~~~l~~a~ 44 (197)
T PRK13936 2 DLQSRIRQHFEDSIDTKQQAMEVLAPPIAQAVELMVQALLNEG 44 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC
Confidence 4667777777776666655555555555555455555555544
No 311
>PF13990 YjcZ: YjcZ-like protein
Probab=20.62 E-value=2.5e+02 Score=21.77 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHhhcc
Q 035166 16 FQTMSESIIAKIDEMGSRIDELEQSIN--DLRSEMGI 50 (71)
Q Consensus 16 Fq~MS~~I~~riDdMg~RIDdLEksI~--dLm~qaG~ 50 (71)
|....+++..--+.+..|++.||+-|. ||..++|.
T Consensus 92 s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~~a~~ 128 (270)
T PF13990_consen 92 SPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQQAGE 128 (270)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555556888999999999885 67777664
No 312
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.60 E-value=94 Score=25.86 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=9.8
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 035166 26 KIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dL 44 (71)
+|+++..+|++|++.+.+|
T Consensus 32 kie~L~kql~~Lk~q~~~l 50 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDL 50 (489)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4555555555555554433
No 313
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=20.51 E-value=3.5e+02 Score=19.71 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSAS 55 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~ 55 (71)
..+.+..|..=-......++..-..++.+|+.++++...+..|..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~ 172 (301)
T PF14362_consen 126 QAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT 172 (301)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34444445555556667788999999999999999999888887765
No 314
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.41 E-value=2.1e+02 Score=22.53 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
|+..|.+.|..+-.+||.-++.--+|+.|+.-=+..+
T Consensus 52 L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~ 88 (280)
T COG5074 52 LTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSA 88 (280)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999986544433
No 315
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=20.36 E-value=87 Score=19.00 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
.+++.+...+|+.++ +.|+.+||.
T Consensus 22 ~el~~~l~~is~~~L------~~~L~~L~~ 45 (90)
T PF01638_consen 22 SELQRRLPGISPKVL------SQRLKELEE 45 (90)
T ss_dssp HHHHHHSTTS-HHHH------HHHHHHHHH
T ss_pred HHHHHhcchhHHHHH------HHHHHHHHH
Confidence 344444445555544 456666654
No 316
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=20.19 E-value=2.8e+02 Score=18.89 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHH
Q 035166 2 TAFVQNLLQQMQ----SRFQTMSESIIAKIDEMGS------RIDELEQSINDLRS 46 (71)
Q Consensus 2 T~~Vq~LLqqmQ----~kFq~MS~~I~~riDdMg~------RIDdLEksI~dLm~ 46 (71)
|--++.||.-+| ++|-..++.|-.-+.+|.+ +-..+..+|..|..
T Consensus 22 Tk~IqeLl~aAQ~~~~~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~ 76 (123)
T PF12205_consen 22 TKRIQELLRAAQEGRHDSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTS 76 (123)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHH
Confidence 556788888887 5788899999988888854 23444445555443
No 317
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=20.13 E-value=2.3e+02 Score=22.52 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=2.9
Q ss_pred HHhhhHHH
Q 035166 29 EMGSRIDE 36 (71)
Q Consensus 29 dMg~RIDd 36 (71)
.+-.||+.
T Consensus 424 ~~~~rl~~ 431 (462)
T PRK08032 424 AVSDSIDA 431 (462)
T ss_pred HHHHHHHH
Confidence 33333333
No 318
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=20.10 E-value=1.5e+02 Score=17.19 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhhccCCCCC
Q 035166 33 RIDELEQSINDLRSEMGIEGSAS 55 (71)
Q Consensus 33 RIDdLEksI~dLm~qaG~e~~~~ 55 (71)
+.+.+++.+.+.+.+.|++-...
T Consensus 86 ~~~~~~~~L~~~~~~~~v~~~~~ 108 (110)
T PF06480_consen 86 SVDSFDEFLIEALVEKGVKYESV 108 (110)
T ss_dssp -HHHHHHHHHHHHHHTT--TTT-
T ss_pred CCHHHHHHHHHHHHHCCCcccee
Confidence 46889999999999999876543
Done!