Query 035166
Match_columns 71
No_of_seqs 100 out of 144
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ci9_A Heat shock factor-bindi 99.9 1E-26 3.5E-31 136.7 3.5 42 1-42 7-48 (48)
2 2bez_C E2 glycoprotein; coiled 95.6 0.025 8.5E-07 35.8 5.1 33 3-39 44-76 (77)
3 3swf_A CGMP-gated cation chann 94.8 0.19 6.4E-06 31.3 7.2 45 4-48 11-55 (74)
4 3swy_A Cyclic nucleotide-gated 93.1 0.28 9.5E-06 28.0 5.2 37 4-40 9-45 (46)
5 1wyy_A E2 glycoprotein; membra 93.1 0.2 6.9E-06 34.8 5.5 40 3-46 57-98 (149)
6 2pnv_A Small conductance calci 93.1 0.15 5E-06 28.8 3.9 36 7-42 5-40 (43)
7 2pnv_A Small conductance calci 91.0 0.53 1.8E-05 26.5 4.6 37 11-47 2-38 (43)
8 1aq5_A Matrilin-1, CMP, cartil 90.4 0.87 3E-05 26.2 5.3 30 12-41 17-46 (47)
9 2ieq_A S glycoprotein, spike g 88.1 0.17 5.8E-06 33.7 1.2 42 4-46 44-90 (109)
10 3ci9_A Heat shock factor-bindi 88.0 1.8 6.2E-05 24.7 5.4 39 6-44 5-43 (48)
11 3n06_A Prolactin, PRL; PH depe 87.0 2.3 7.8E-05 29.0 6.5 36 18-53 94-129 (186)
12 1pzq_A Erythronolide synthase; 86.6 0.25 8.7E-06 29.6 1.3 23 29-51 9-31 (60)
13 3iv1_A Tumor susceptibility ge 85.4 3.9 0.00013 25.4 6.3 45 2-46 6-67 (78)
14 3te3_A Polycystic kidney disea 85.2 1.3 4.5E-05 24.5 3.7 20 30-49 12-31 (39)
15 4gif_A Polycystic kidney disea 83.1 1.7 6E-05 24.7 3.7 20 21-40 24-43 (45)
16 1zva_A E2 glycoprotein; membra 78.3 2.6 8.7E-05 26.5 3.6 21 3-23 14-34 (77)
17 2yko_A LINE-1 ORF1P; RNA-bindi 75.3 2 6.8E-05 31.4 2.8 16 31-46 33-48 (233)
18 1t3j_A Mitofusin 1; coiled coi 75.0 3.3 0.00011 26.6 3.6 37 8-44 30-66 (96)
19 2er8_A Regulatory protein Leu3 74.7 1.4 4.8E-05 24.7 1.5 21 25-45 49-69 (72)
20 2yru_A Steroid receptor RNA ac 74.6 2.8 9.7E-05 27.1 3.2 22 22-43 32-54 (118)
21 1f6f_A Placental lactogen; 4-h 74.1 10 0.00035 26.2 6.1 41 9-49 97-140 (199)
22 1jek_B ENV polyprotein; envelo 73.6 2.8 9.5E-05 22.9 2.5 18 32-49 7-24 (36)
23 3p8c_D Wiskott-aldrich syndrom 72.2 5 0.00017 29.7 4.4 20 23-42 62-81 (279)
24 3hrn_A Transient receptor pote 71.7 5.3 0.00018 24.2 3.7 23 18-40 20-42 (64)
25 2zvf_A Alanyl-tRNA synthetase; 71.5 2.8 9.6E-05 26.9 2.6 42 6-47 13-54 (171)
26 1lwu_B Fibrinogen beta chain; 71.4 7.4 0.00025 28.9 5.2 47 2-48 8-58 (323)
27 2ba2_A D12_ORF131, hypothetica 69.9 2.4 8.1E-05 27.1 1.9 17 22-38 68-84 (85)
28 3rk6_A Polyadenylate-binding p 65.9 14 0.00047 25.8 5.4 47 2-48 20-69 (234)
29 2lme_A Adhesin YADA; trimeric 65.8 7.3 0.00025 24.3 3.6 23 24-46 15-37 (105)
30 1zme_C Proline utilization tra 65.6 8.7 0.0003 21.1 3.6 22 26-47 45-66 (70)
31 4a25_A DPS, ferritin DPS famil 63.7 9.8 0.00034 25.0 4.1 30 9-38 55-84 (169)
32 1hwt_C Protein (heme activator 62.7 2.7 9.3E-05 23.9 1.1 22 25-46 58-79 (81)
33 4gif_A Polycystic kidney disea 62.1 19 0.00065 20.3 5.0 19 30-48 12-30 (45)
34 2l3l_A Tubulin-specific chaper 61.7 27 0.00092 22.2 5.8 20 24-43 57-76 (111)
35 1avy_A Fibritin, gpwac M; bact 61.6 23 0.00078 22.0 5.2 36 22-57 19-54 (74)
36 3efg_A Protein SLYX homolog; x 60.5 2.6 9E-05 25.6 0.7 19 31-49 41-59 (78)
37 3mq9_A Bone marrow stromal ant 60.0 38 0.0013 24.5 7.0 22 28-49 400-421 (471)
38 1jcd_A Major outer membrane li 59.8 18 0.00063 20.7 4.3 25 22-46 8-32 (52)
39 4i0x_A ESAT-6-like protein MAB 59.7 16 0.00055 21.4 4.2 27 10-36 6-32 (94)
40 3aj1_A Cellulose synthase oper 59.6 41 0.0014 23.4 7.3 46 2-49 22-79 (167)
41 2z9e_A Cellulose synthase oper 59.0 42 0.0015 23.3 7.2 46 2-49 22-79 (167)
42 1sfc_A VAMP 2, protein (synapt 58.5 29 0.001 21.3 6.3 23 26-48 52-74 (96)
43 3iyn_Q Protein IX, PIX, hexon- 58.2 14 0.00049 25.2 4.2 29 21-49 101-129 (140)
44 2gtl_O Extracellular hemoglobi 57.3 3 0.0001 29.8 0.7 21 23-43 10-30 (215)
45 2fjc_A Antigen TPF1; mini ferr 57.2 13 0.00045 23.7 3.7 30 9-38 44-73 (156)
46 2chp_A MRGA, metalloregulation 56.7 14 0.00047 23.6 3.7 44 9-52 43-90 (153)
47 2bk6_A Non-heme iron-containin 56.0 14 0.00049 23.5 3.7 43 9-51 39-85 (156)
48 3iq1_A DPS family protein; csg 55.7 14 0.00049 23.6 3.7 45 9-53 49-97 (159)
49 2fxo_A Myosin heavy chain, car 55.4 37 0.0013 21.5 6.7 24 24-47 82-105 (129)
50 3ak8_A DNA protection during s 55.0 15 0.00051 23.9 3.7 30 9-38 59-88 (167)
51 2z90_A Starvation-inducible DN 54.3 16 0.00053 23.6 3.7 30 9-38 49-78 (161)
52 2yjk_A AFP, DPS; metal-binding 54.1 16 0.00054 23.5 3.7 30 9-38 51-80 (161)
53 3rmi_A Chorismate mutase prote 53.8 28 0.00097 21.9 4.8 30 18-47 5-34 (114)
54 2cf7_A DPR; peroxide resistanc 53.8 16 0.00054 23.7 3.7 44 9-52 48-95 (165)
55 3f42_A Protein HP0035; helicob 53.7 13 0.00045 23.3 3.2 21 5-25 8-28 (99)
56 3gwk_C SAG1039, putative uncha 53.3 29 0.001 19.8 5.1 30 9-38 13-42 (98)
57 2xz3_A Maltose ABC transporter 53.2 39 0.0013 24.4 6.1 39 6-44 359-405 (463)
58 3zbh_A ESXA; unknown function, 52.8 29 0.00099 19.5 5.1 29 9-37 14-42 (99)
59 2hn1_A CORA, magnesium and cob 52.7 19 0.00063 24.3 4.1 23 19-41 181-203 (266)
60 2c2j_A DNA-binding stress resp 52.6 16 0.00054 25.3 3.7 30 9-38 78-107 (211)
61 3kwo_A Putative bacterioferrit 52.6 21 0.00071 22.7 4.1 44 9-52 36-83 (152)
62 1l4a_A Synaptobrevin; snare, s 52.5 25 0.00084 20.8 4.2 23 26-48 37-59 (80)
63 4eve_A Neutrophil-activating p 52.4 20 0.00069 23.3 4.1 45 9-53 53-101 (164)
64 2wlu_A DPS-like peroxide resis 52.3 17 0.00058 23.9 3.7 30 9-38 58-87 (175)
65 1n7s_A Vesicle-associated memb 51.6 30 0.001 19.4 6.3 22 27-48 27-48 (63)
66 3coq_A Regulatory protein GAL4 51.2 16 0.00054 20.7 3.1 23 25-47 45-67 (89)
67 2yw6_A DNA protection during s 50.8 18 0.00063 23.9 3.7 30 9-38 47-76 (183)
68 1o9r_A Agrobacterium tumefacie 49.9 20 0.0007 22.9 3.7 30 9-38 48-77 (162)
69 1rtm_1 Mannose-binding protein 49.7 22 0.00075 21.6 3.8 25 23-47 2-26 (149)
70 3uno_A Probable bacterioferrit 49.6 55 0.0019 21.8 7.2 37 22-62 141-177 (189)
71 2d4y_A HAP1, flagellar HOOK-as 49.4 49 0.0017 24.6 6.2 42 8-49 79-120 (463)
72 1pyi_A Protein (pyrimidine pat 48.9 23 0.00078 20.5 3.6 19 26-44 49-67 (96)
73 4ioe_A Secreted protein ESXB; 48.7 31 0.0011 19.3 4.1 8 16-23 21-28 (93)
74 3eh0_A UDP-3-O-[3-hydroxymyris 48.6 8.2 0.00028 27.5 1.8 24 21-44 317-340 (341)
75 2wuj_A Septum site-determining 48.6 26 0.0009 19.7 3.7 14 5-18 25-38 (57)
76 1sz7_A BET3 homolog, trafficki 48.4 17 0.00057 25.5 3.4 29 6-35 33-61 (200)
77 1ji5_A DLP-1; dodecamer, four- 48.3 29 0.00098 21.0 4.1 31 9-39 32-62 (142)
78 3mtu_E Head morphogenesis prot 48.3 25 0.00084 21.8 3.8 24 7-41 30-53 (77)
79 3uul_A Utrophin; spectrin repe 48.1 37 0.0013 19.4 5.3 17 23-39 83-99 (118)
80 2c41_A DPS family DNA-binding 48.1 27 0.00093 21.9 4.1 30 9-38 41-70 (158)
81 1t72_A Phosphate transport sys 47.9 46 0.0016 21.5 5.3 27 21-47 43-69 (227)
82 2dl1_A Spartin; SPG20, MIT, st 47.2 57 0.002 21.3 5.9 25 18-42 75-99 (116)
83 1n1q_A DPS protein; four-helix 46.9 30 0.001 21.2 4.1 30 9-38 39-68 (149)
84 2vs0_A Virulence factor ESXA; 46.8 37 0.0013 19.0 5.1 29 9-37 11-39 (97)
85 1jig_A DLP-2; dodecamer, four- 46.8 31 0.001 21.1 4.1 30 9-38 36-65 (146)
86 3pmo_A UDP-3-O-[3-hydroxymyris 46.7 11 0.00038 27.5 2.3 24 21-44 339-362 (372)
87 3u0c_A Invasin IPAB, 62 kDa an 46.5 78 0.0027 22.7 7.4 28 28-55 120-147 (201)
88 4akv_A Sorting nexin-33; trans 44.9 64 0.0022 23.7 6.2 39 8-46 324-363 (386)
89 2pyb_A NAPA, neutrophil activa 44.7 13 0.00045 23.5 2.2 30 9-38 36-65 (151)
90 2xgw_A Peroxide resistance pro 44.3 26 0.00088 23.9 3.7 43 9-51 74-120 (199)
91 3nvo_A Zinc transport protein 43.9 15 0.00051 24.6 2.5 23 19-41 156-178 (264)
92 4egw_A Magnesium transport pro 43.8 24 0.00082 24.2 3.5 17 25-41 171-187 (280)
93 2xz3_A Maltose ABC transporter 43.8 43 0.0015 24.2 5.1 20 28-47 382-401 (463)
94 1tjo_A Iron-rich DPSA-homolog 43.7 33 0.0011 22.4 4.1 44 9-52 60-107 (182)
95 3hd7_A Vesicle-associated memb 43.4 53 0.0018 19.8 6.3 40 9-48 7-49 (91)
96 3p8c_E Probable protein brick1 43.2 56 0.0019 20.0 6.8 39 9-47 29-67 (75)
97 2c2u_A DPS, DNA-binding stress 42.5 22 0.00077 24.4 3.2 44 9-52 91-138 (207)
98 2nps_A VAMP-4, vesicle-associa 42.2 49 0.0017 19.1 4.6 19 30-48 34-52 (74)
99 2bbh_A Divalent cation transpo 42.1 20 0.00069 24.0 2.9 15 27-41 188-202 (269)
100 3nmd_A CGMP dependent protein 41.7 58 0.002 19.8 6.2 40 9-48 21-63 (72)
101 3qne_A Seryl-tRNA synthetase, 41.1 1.3E+02 0.0043 23.5 8.2 56 7-62 47-120 (485)
102 3okg_A Restriction endonucleas 40.7 73 0.0025 21.8 5.6 35 13-47 177-211 (412)
103 1kmi_Z CHEZ, chemotaxis protei 40.5 10 0.00036 26.5 1.3 35 16-53 141-175 (214)
104 2zdi_C Prefoldin subunit alpha 40.5 55 0.0019 20.8 4.7 39 6-45 12-53 (151)
105 2bjn_A TPC6, trafficking prote 40.3 9.5 0.00033 25.4 1.0 29 6-34 14-45 (160)
106 3pp5_A BRK1, protein brick1; t 39.5 64 0.0022 19.6 6.3 28 19-46 39-66 (73)
107 1gl2_A Endobrevin; membrane pr 39.2 53 0.0018 18.6 6.3 20 29-48 34-53 (65)
108 2d5k_A DPS, DPS family protein 38.6 47 0.0016 20.8 4.1 30 9-38 38-67 (156)
109 3opc_A Uncharacterized protein 38.2 73 0.0025 20.0 7.0 49 4-52 19-75 (154)
110 2i0m_A Phosphate transport sys 37.9 78 0.0027 20.2 5.5 28 21-48 39-66 (216)
111 2gr7_A Adhesin; trimeric autot 37.8 82 0.0028 20.4 5.3 29 23-51 37-69 (129)
112 1fxk_C Protein (prefoldin); ar 37.8 71 0.0024 19.7 5.8 36 11-46 8-43 (133)
113 1cnt_1 CNTF, ciliary neurotrop 37.8 36 0.0012 24.2 3.7 52 7-58 89-140 (187)
114 3rrk_A V-type ATPase 116 kDa s 37.2 75 0.0026 22.3 5.4 28 20-47 101-128 (357)
115 1xwm_A PHOU, phosphate uptake 37.1 82 0.0028 20.2 5.3 42 6-47 24-65 (217)
116 3hrn_A Transient receptor pote 36.6 69 0.0024 19.2 5.1 19 30-48 11-29 (64)
117 1lwu_C Fibrinogen gamma chain; 36.3 1.3E+02 0.0044 22.3 6.7 27 23-49 31-57 (323)
118 3dyt_A Sorting nexin-9; 3-heli 36.2 1.1E+02 0.0037 22.1 6.2 38 9-46 305-343 (366)
119 4i0x_B ESAT-6-like protein MAB 36.1 66 0.0023 18.9 5.1 25 13-37 20-44 (103)
120 2ovc_A Potassium voltage-gated 36.0 28 0.00094 18.4 2.2 14 30-43 8-21 (33)
121 2yko_A LINE-1 ORF1P; RNA-bindi 35.8 17 0.00057 26.5 1.8 25 22-46 3-27 (233)
122 3lt7_A Adhesin YADA; adhesion, 35.4 72 0.0025 19.1 4.3 20 25-44 34-53 (64)
123 2h8e_A Crossover junction endo 35.0 24 0.0008 21.8 2.2 17 34-50 71-87 (120)
124 3oj5_A Ferritin family protein 34.6 92 0.0032 20.0 5.7 54 4-62 124-177 (189)
125 3b5n_A Synaptobrevin homolog 1 34.5 62 0.0021 18.0 6.3 20 29-48 27-46 (61)
126 2oqq_A Transcription factor HY 34.5 62 0.0021 18.0 4.2 25 23-47 8-32 (42)
127 1sum_B Phosphate transport sys 34.4 98 0.0033 20.3 5.7 29 20-48 38-66 (235)
128 3lay_A Zinc resistance-associa 34.2 1.1E+02 0.0037 20.8 7.0 17 27-43 115-131 (175)
129 3g67_A Methyl-accepting chemot 34.1 1.1E+02 0.0039 21.0 7.0 16 9-24 9-24 (213)
130 1lwu_C Fibrinogen gamma chain; 34.0 1.2E+02 0.0041 22.5 6.2 16 25-40 40-55 (323)
131 3ghg_A Fibrinogen alpha chain; 33.8 84 0.0029 25.7 5.7 38 11-48 103-147 (562)
132 2vxx_A Starvation induced DNA 33.7 59 0.002 21.1 4.1 44 9-52 59-106 (192)
133 1urq_A M-tomosyn isoform; tran 33.5 62 0.0021 18.6 3.8 25 24-48 24-48 (63)
134 1t72_A Phosphate transport sys 33.2 97 0.0033 19.9 5.5 41 4-44 129-169 (227)
135 1yzm_A FYVE-finger-containing 32.7 26 0.00088 20.1 1.9 19 25-47 25-43 (51)
136 2yo3_A General control protein 32.5 1.5E+02 0.0052 21.9 6.8 20 24-43 236-255 (268)
137 3na7_A HP0958; flagellar bioge 32.0 65 0.0022 22.2 4.3 24 25-48 97-120 (256)
138 1fxk_A Prefoldin; archaeal pro 32.0 78 0.0027 18.5 6.3 24 23-46 77-100 (107)
139 2y7c_A Type-1 restriction enzy 31.5 68 0.0023 22.2 4.3 19 23-41 381-399 (464)
140 3v1a_A Computational design, M 31.2 29 0.00098 19.7 1.9 19 25-47 24-42 (48)
141 2iub_A CORA, divalent cation t 31.1 48 0.0016 23.8 3.5 21 6-26 183-203 (363)
142 3t98_B Nucleoporin NUP58/NUP45 31.0 75 0.0026 19.7 4.1 30 16-45 10-39 (93)
143 3uun_A Dystrophin; triple heli 30.9 76 0.0026 17.9 5.2 20 22-41 82-101 (119)
144 1bgf_A STAT-4; transcription f 30.9 54 0.0019 21.2 3.5 20 2-21 55-74 (124)
145 2c5k_T Syntaxin TLG1, T-snare 30.4 96 0.0033 19.0 4.8 38 6-43 16-61 (95)
146 2dq0_A Seryl-tRNA synthetase; 30.3 1.8E+02 0.0061 22.1 8.4 55 8-62 46-118 (455)
147 3r2k_A Bacterioferritin, BFR; 29.7 57 0.002 19.8 3.3 29 9-37 37-65 (154)
148 2dq3_A Seryl-tRNA synthetase; 29.6 1.8E+02 0.006 21.8 6.9 56 7-62 44-117 (425)
149 1yf2_A Type I restriction-modi 29.4 1.3E+02 0.0045 20.3 5.9 37 12-48 380-416 (425)
150 1t3j_A Mitofusin 1; coiled coi 29.2 1.1E+02 0.0038 19.3 4.8 24 20-43 49-72 (96)
151 3tul_A Cell invasion protein S 29.1 50 0.0017 23.0 3.2 41 15-55 49-99 (158)
152 2clb_A DPS-like protein; DI-ir 28.9 44 0.0015 22.0 2.8 30 9-38 56-85 (188)
153 2zdi_C Prefoldin subunit alpha 28.2 1.2E+02 0.004 19.3 5.1 22 25-46 119-140 (151)
154 2dnx_A Syntaxin-12; snare, HAB 28.1 1.1E+02 0.0038 19.3 4.6 27 23-49 49-75 (130)
155 4ev6_A Magnesium transport pro 28.1 49 0.0017 23.4 3.1 27 4-30 157-183 (339)
156 1buu_A Protein (mannose-bindin 27.8 77 0.0026 19.7 3.8 25 22-46 20-44 (168)
157 1ecm_A Endo-oxabicyclic transi 27.5 50 0.0017 20.0 2.7 21 27-47 7-27 (109)
158 2qqy_A Sigma B operon; dodecam 27.0 1E+02 0.0034 18.1 4.1 28 10-37 42-69 (149)
159 3g46_A Globin-1; oxygen transp 26.9 65 0.0022 19.9 3.3 34 15-49 65-98 (146)
160 4fm3_A Uncharacterized hypothe 26.7 44 0.0015 21.3 2.4 16 34-49 80-95 (98)
161 1fzc_B Fibrin; blood coagulati 26.5 20 0.00067 26.6 0.8 24 25-48 37-60 (328)
162 3lrd_A Major ampullate spidroi 26.4 1.1E+02 0.0037 20.5 4.4 29 3-31 18-56 (137)
163 3hnw_A Uncharacterized protein 26.2 75 0.0026 20.7 3.6 20 27-46 77-96 (138)
164 2l5g_B Putative uncharacterize 26.1 76 0.0026 17.6 3.1 19 26-44 10-28 (42)
165 1z0j_B FYVE-finger-containing 26.1 35 0.0012 20.2 1.7 20 25-48 32-51 (59)
166 3he4_A Synzip6; heterodimeric 26.1 1E+02 0.0035 17.9 3.8 25 21-45 23-51 (56)
167 1szq_A 2-methylcitrate dehydra 26.1 88 0.003 23.7 4.4 37 10-46 437-479 (483)
168 1gs9_A Apolipoprotein E, APOE4 25.6 56 0.0019 21.8 2.9 23 17-39 58-80 (165)
169 1z0k_B FYVE-finger-containing 25.4 39 0.0013 20.4 1.9 20 25-48 43-62 (69)
170 1aa0_A Fibritin, gpwac E; bact 25.3 1.5E+02 0.0051 19.5 4.9 36 22-57 61-96 (113)
171 3u0c_A Invasin IPAB, 62 kDa an 25.2 1.9E+02 0.0065 20.7 5.9 34 13-46 88-121 (201)
172 3cue_B Transport protein parti 24.9 47 0.0016 24.6 2.6 30 4-34 65-94 (283)
173 1gp8_A Protein (scaffolding pr 24.8 33 0.0011 19.0 1.4 13 31-43 7-19 (40)
174 3uoi_A Bacterioferritin, BFR; 24.8 79 0.0027 19.2 3.3 29 9-37 39-67 (161)
175 2zqm_A Prefoldin beta subunit 24.7 1.1E+02 0.0039 18.0 6.3 21 25-45 91-111 (117)
176 3pjs_K KCSA, voltage-gated pot 24.3 1.3E+02 0.0044 19.2 4.4 20 23-42 143-162 (166)
177 1sig_A Sigma70, RNA polymerase 24.1 89 0.0031 21.9 3.9 43 8-50 139-188 (339)
178 3mq1_A Mite allergen DER P 5; 23.8 87 0.003 20.3 3.5 30 7-40 4-33 (103)
179 2dae_A KIAA0733 protein; mitog 23.8 18 0.00063 22.5 0.2 40 7-48 12-51 (75)
180 2jmh_A BLO T 5, mite allergen 23.8 1.4E+02 0.0049 19.7 4.6 29 8-40 20-48 (119)
181 2w83_C C-JUN-amino-terminal ki 23.8 1.4E+02 0.0046 18.5 6.1 33 11-43 23-55 (77)
182 3ajm_A Programmed cell death p 23.8 1.1E+02 0.0037 22.1 4.3 32 17-48 100-138 (213)
183 1woz_A 177AA long conserved hy 23.7 1.1E+02 0.0039 20.6 4.2 42 5-48 50-96 (177)
184 2j69_A Bacterial dynamin-like 23.5 2.7E+02 0.0091 21.9 6.8 36 10-48 618-653 (695)
185 1ses_A Seryl-tRNA synthetase; 23.5 2.3E+02 0.0079 21.1 7.8 54 8-61 43-112 (421)
186 1onv_B Serine phosphatase FCP1 23.5 37 0.0013 21.3 1.6 16 27-45 68-83 (83)
187 2y7c_A Type-1 restriction enzy 23.4 1.1E+02 0.0039 21.1 4.2 19 23-41 168-186 (464)
188 1zuj_A Hypothetical protein ll 23.2 82 0.0028 21.1 3.4 41 13-53 57-102 (179)
189 1zs3_A Lactococcus lactis Mg13 23.1 82 0.0028 21.2 3.4 25 13-37 58-82 (182)
190 2e9x_C GINS complex subunit 3; 23.1 60 0.002 22.5 2.8 42 3-44 136-181 (219)
191 1nog_A Conserved hypothetical 23.1 1.2E+02 0.004 20.6 4.2 42 5-48 51-97 (177)
192 1huw_A Human growth hormone; 2 22.9 46 0.0016 22.7 2.1 26 25-50 104-130 (191)
193 4abx_A DNA repair protein RECN 22.7 1.5E+02 0.0051 19.2 4.5 32 9-40 134-165 (175)
194 2c0j_B R32611_2; palmitate; HE 22.7 35 0.0012 22.6 1.4 28 7-34 14-45 (160)
195 3p8c_D Wiskott-aldrich syndrom 22.5 2.3E+02 0.008 20.8 6.3 43 5-48 34-80 (279)
196 3aad_A Transcription initiatio 22.4 1.6E+02 0.0053 20.8 4.9 24 25-48 265-288 (292)
197 1ydx_A Type I restriction enzy 22.3 2E+02 0.0067 19.8 5.9 37 12-48 356-392 (406)
198 1yf2_A Type I restriction-modi 21.8 1.9E+02 0.0065 19.5 5.6 36 13-48 171-206 (425)
199 1xwm_A PHOU, phosphate uptake 21.8 1.3E+02 0.0044 19.2 4.0 40 5-44 126-165 (217)
200 1nfn_A Apolipoprotein E3; lipi 21.8 34 0.0012 23.1 1.3 13 27-39 68-80 (191)
201 2ve7_A Kinetochore protein HEC 21.8 95 0.0032 22.4 3.7 18 27-44 187-204 (315)
202 2ld3_A Myosin VI; molecular mo 27.3 19 0.00066 22.2 0.0 35 14-48 17-51 (88)
203 1wle_A Seryl-tRNA synthetase; 21.7 2.8E+02 0.0097 21.5 8.6 39 23-61 121-164 (501)
204 3gvy_A Bacterioferritin; iron 21.7 59 0.002 19.9 2.3 27 11-37 39-65 (161)
205 2la2_A Cecropin, papiliocin; a 21.6 69 0.0023 17.5 2.2 15 22-36 3-17 (38)
206 2akf_A Coronin-1A; coiled coil 21.5 1E+02 0.0035 16.2 3.2 13 30-42 18-30 (32)
207 2i0m_A Phosphate transport sys 21.5 1.6E+02 0.0056 18.6 4.8 40 5-44 126-165 (216)
208 2vzb_A Putative bacterioferrit 21.4 1.5E+02 0.005 18.0 4.1 29 9-37 48-76 (170)
209 3onj_A T-snare VTI1; helix, HA 21.4 1.4E+02 0.0049 17.9 5.6 45 8-52 2-57 (97)
210 2xze_Q Charged multivesicular 21.1 75 0.0026 17.3 2.4 12 8-19 27-38 (40)
211 4e79_A UDP-3-O-acylglucosamine 21.1 40 0.0014 24.2 1.6 24 22-45 323-351 (357)
212 3viq_B Mating-type switching p 20.9 1.5E+02 0.0053 18.3 4.1 28 21-48 4-31 (85)
213 3emo_C HIA (adhesin); transmem 20.9 2E+02 0.0067 19.3 5.9 29 22-50 69-101 (162)
214 2d8d_A Aroag, phospho-2-dehydr 20.9 1E+02 0.0036 17.9 3.2 21 27-47 5-25 (90)
215 2cpg_A REPA protein, transcrip 20.7 29 0.00098 17.4 0.6 27 19-48 9-35 (45)
216 3fvb_A Bacterioferritin; niaid 20.5 1E+02 0.0035 19.7 3.3 29 9-37 58-86 (182)
217 3lyn_A Sperm lysin; abalone ly 20.1 73 0.0025 21.6 2.6 23 10-32 56-78 (136)
218 3e98_A GAF domain of unknown f 20.1 92 0.0031 21.8 3.3 23 27-49 74-96 (252)
219 1x8y_A Lamin A/C; structural p 20.0 1.5E+02 0.0051 17.6 5.8 35 6-47 16-50 (86)
No 1
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=99.93 E-value=1e-26 Score=136.74 Aligned_cols=42 Identities=60% Similarity=0.918 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 1 MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 1 lT~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
||+|||+||+|||+||++||++|++||||||+|||+||+||+
T Consensus 7 Lt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si~ 48 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNIA 48 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 689999999999999999999999999999999999999985
No 2
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=95.62 E-value=0.025 Score=35.77 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
..+..|+.|++..|+.+|.. |.|.-.|+|.||+
T Consensus 44 ~aL~~L~~qL~~NFgAISss----i~dIy~RLd~leA 76 (77)
T 2bez_C 44 QALNTLVKQLSSNFGAISSV----LNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHH----HHHHHHHHHhhhc
Confidence 45778999999999997765 5789999999996
No 3
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=94.76 E-value=0.19 Score=31.35 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.+..+...-
T Consensus 11 ~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~ 55 (74)
T 3swf_A 11 RMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTE 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Confidence 367789999999998766666555667889999999999866543
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=93.11 E-value=0.28 Score=28.00 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEks 40 (71)
-+++-|+.||.||..+-.+.-+-=--|-.||-.||..
T Consensus 9 ~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 9 QLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3677899999999987666665555677888888875
No 5
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=93.10 E-value=0.2 Score=34.83 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS--INDLRS 46 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEks--I~dLm~ 46 (71)
..+..|+.|++..|+.+|.. |.|.-.|+|.||+. +.-|++
T Consensus 57 ~aL~~l~~qL~~nFgAISss----i~dIy~rLd~leAdaQVDRLIt 98 (149)
T 1wyy_A 57 QALNTLVKQLSSNFGAISSV----LNDILSRLDKVEAEVQIDRLIT 98 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999997765 57899999999986 344544
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=93.06 E-value=0.15 Score=28.80 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
+.+-.|..-+++=++.+-.||+-|..|+|+|..++.
T Consensus 5 n~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 5 NIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455556666666666665554
No 7
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=90.96 E-value=0.53 Score=26.46 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.||+.--.|-..+-+|=+++-.||+.||..+.+|-.+
T Consensus 2 ~mQn~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 2 SHMNIMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3666677788888899999999999999999988764
No 8
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=90.41 E-value=0.87 Score=26.19 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdLEksI 41 (71)
.|.+-.+.-..+..|+++|+.||-.||+.|
T Consensus 17 FQ~~v~~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 17 FQTKVEELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555566677899999999999875
No 9
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=88.10 E-value=0.17 Score=33.66 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKID-----EMGSRIDELEQSINDLRS 46 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riD-----dMg~RIDdLEksI~dLm~ 46 (71)
.+..|++|+...|+..|..|- +|= +..+|||.||+.-..|.+
T Consensus 44 aLs~ll~QLn~NF~A~s~~lq-~~fn~t~lni~~elD~LEa~A~~l~~ 90 (109)
T 2ieq_A 44 ALNHLTSQLRHNFQSGGRGSG-RGGNLTYLNLSSELKQLEAKTASLFQ 90 (109)
T ss_dssp HHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcchHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777666554 221 677888888888777764
No 10
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=88.03 E-value=1.8 Score=24.67 Aligned_cols=39 Identities=31% Similarity=0.484 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
+.|-.-+|+=++.|.+..-.-=+.+-+|||+.-..|.+|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555566666666665555566678899999999887
No 11
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=87.02 E-value=2.3 Score=29.00 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
..++.|+.|.-|+..++.+|++-|..++.+.+....
T Consensus 94 ~~~~~il~Kakei~e~~~~L~egi~~i~~~~~~~~~ 129 (186)
T 3n06_A 94 EAPEAILSKAVEIEEQTKRLLERMELIVSQVHPETK 129 (186)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 457999999999999999999999999998865433
No 12
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=86.56 E-value=0.25 Score=29.57 Aligned_cols=23 Identities=39% Similarity=0.787 Sum_probs=19.3
Q ss_pred HHhhhHHHHHHHHHHHHHhhccC
Q 035166 29 EMGSRIDELEQSINDLRSEMGIE 51 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~qaG~e 51 (71)
|+|.|+|+|||.+..|-.+.|-+
T Consensus 9 digdrldelekalealsaedghd 31 (60)
T 1pzq_A 9 DIGDRLDELEKALEALSAEDGHD 31 (60)
T ss_dssp TTHHHHHHHHHHHHHHTTSSCCH
T ss_pred chhhHHHHHHHHHHHhccccccc
Confidence 57899999999999988777643
No 13
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=85.39 E-value=3.9 Score=25.43 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHH----HHHHHHHHHHH
Q 035166 2 TAFVQNLLQQMQSRFQTMSESII-------------AKIDEMGSRID----ELEQSINDLRS 46 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~~I~-------------~riDdMg~RID----dLEksI~dLm~ 46 (71)
+++=+.|=-.|+++|...+..|- .+|++|-+|++ +|++||.-|-.
T Consensus 6 SAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 6 SAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666778888887777664 45788887775 68888876643
No 14
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=85.23 E-value=1.3 Score=24.54 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=15.8
Q ss_pred HhhhHHHHHHHHHHHHHhhc
Q 035166 30 MGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qaG 49 (71)
..+|++.||.+|..++.+..
T Consensus 12 L~rRVlqlE~~l~gI~S~id 31 (39)
T 3te3_A 12 LTRRVLQLETVLEGVVSQID 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788899998888887753
No 15
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=83.06 E-value=1.7 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEks 40 (71)
..|.++||-+++++.-+|++
T Consensus 24 ~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 24 EGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp HHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35666677777777666653
No 16
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=78.26 E-value=2.6 Score=26.51 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESI 23 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I 23 (71)
..+..|+.|++..|+.+|..|
T Consensus 14 ~aL~~L~~qL~~NFgAISSsi 34 (77)
T 1zva_A 14 QALNTLVKQLSSNFGAISSVL 34 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHH
Confidence 457889999999999988764
No 17
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=75.28 E-value=2 Score=31.36 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=7.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 035166 31 GSRIDELEQSINDLRS 46 (71)
Q Consensus 31 g~RIDdLEksI~dLm~ 46 (71)
..||..+|.++.||-+
T Consensus 33 ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 33 EKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555543
No 18
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=75.00 E-value=3.3 Score=26.58 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
+-+.|..-|..+..++=.--.||-..|++|++.|+-|
T Consensus 30 VQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 30 VQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777666666666666666666543
No 19
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=74.72 E-value=1.4 Score=24.73 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=15.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm 45 (71)
.+++++-.||+.||..|..|-
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567778888888888877653
No 20
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.64 E-value=2.8 Score=27.14 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=15.9
Q ss_pred HHHHH-HHHHhhhHHHHHHHHHH
Q 035166 22 SIIAK-IDEMGSRIDELEQSIND 43 (71)
Q Consensus 22 ~I~~r-iDdMg~RIDdLEksI~d 43 (71)
....| +||..+||+-|...++.
T Consensus 32 ~~~k~~~~D~~KRL~~LfdkLn~ 54 (118)
T 2yru_A 32 HTKKQVCDDISRRLALLREQWAG 54 (118)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445 79999999988876553
No 21
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=74.05 E-value=10 Score=26.19 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=33.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 9 LQQMQSRFQT---MSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 9 LqqmQ~kFq~---MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
|+.+..-|.+ +++.|++|-+++..++.+|+.-|.-|+.+.+
T Consensus 97 L~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~egi~~i~~~~~ 140 (199)
T 1f6f_A 97 LHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEVIQKRIH 140 (199)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcccccCcchhcchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5566666665 5589999999999999999999999998875
No 22
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=73.62 E-value=2.8 Score=22.86 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 035166 32 SRIDELEQSINDLRSEMG 49 (71)
Q Consensus 32 ~RIDdLEksI~dLm~qaG 49 (71)
++||.++.+|..|+.++-
T Consensus 7 reI~~~t~nIy~LLeeAq 24 (36)
T 1jek_B 7 EEIEQHEGNLSLLLREAA 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999998874
No 23
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=72.19 E-value=5 Score=29.74 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~ 42 (71)
+..|+..+..||+.|+..+.
T Consensus 62 ~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 62 FSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34677778888888887775
No 24
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=71.74 E-value=5.3 Score=24.24 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEks 40 (71)
+.-..|.++||-+++++.-+|++
T Consensus 20 ~sl~gI~SqIDaV~~KL~~~Er~ 42 (64)
T 3hrn_A 20 HSIGSIVSKIDAVIVKLEIMERA 42 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33346788888888888888875
No 25
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=71.46 E-value=2.8 Score=26.92 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+.+|.++...|..=.++|..|++.+-.++.+||+.+..|..+
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665434689999999999999999999888765
No 26
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=71.42 E-value=7.4 Score=28.93 Aligned_cols=47 Identities=13% Similarity=0.339 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 2 TAFVQNLLQQMQSRFQ-TMSESI---IAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq-~MS~~I---~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+.-|+....+|+..++ ..+.+| -.+++.+..+|..||..|..++...
T Consensus 8 ~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp HHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777765 333333 3578999999999999999887764
No 27
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=69.91 E-value=2.4 Score=27.07 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHH
Q 035166 22 SIIAKIDEMGSRIDELE 38 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLE 38 (71)
-|+..|..|+.|+|.||
T Consensus 68 lil~tL~~~nkRLDkle 84 (85)
T 2ba2_A 68 LILEALQGINKRLDNLE 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccC
Confidence 56889999999999987
No 28
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=65.93 E-value=14 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 2 TAFVQNLLQQMQ---SRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 2 T~~Vq~LLqqmQ---~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
.-.|..+|+.|- ++|+.++++|+.-+..--+..+.|..=|.-++.+|
T Consensus 20 ~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekA 69 (234)
T 3rk6_A 20 SEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQA 69 (234)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 357899999999 89999999999865433333556666555555554
No 29
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=65.75 E-value=7.3 Score=24.32 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=16.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm~ 46 (71)
-.|++++..|||++++.+..-..
T Consensus 15 ~~~~~~l~~~i~~~~~~~~~g~A 37 (105)
T 2lme_A 15 AHKFRQLDNRLDKLDTRVDKGLA 37 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887765443
No 30
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.58 E-value=8.7 Score=21.06 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=17.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHh
Q 035166 26 KIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~q 47 (71)
.++++-.||+.||..|..|...
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888999888888654
No 31
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=63.69 E-value=9.8 Score=25.05 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+-++...|+.+-+++...+|+++.||-.|-
T Consensus 55 F~~lH~~fee~y~e~~~~~D~iAERI~~LG 84 (169)
T 4a25_A 55 WRDLHLQLDTLVEAARGFSDDVAERMRAVG 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456788999999999999999999997763
No 32
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=62.72 E-value=2.7 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.536 Sum_probs=14.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~ 46 (71)
..++.+-.||+.||..|..|-.
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~~ 79 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVHS 79 (81)
T ss_dssp HHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 5688899999999998887743
No 33
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=62.14 E-value=19 Score=20.31 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=14.9
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 035166 30 MGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qa 48 (71)
..+|++.||.+|..++.+.
T Consensus 12 L~rRVlqlE~~l~gI~S~i 30 (45)
T 4gif_A 12 LTRRVLQLETVLEGVVSQI 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888764
No 34
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=61.73 E-value=27 Score=22.21 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=17.2
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~d 43 (71)
...+|++..+|..|++-++|
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~d 76 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLIND 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999887
No 35
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=61.62 E-value=23 Score=21.97 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 57 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~ 57 (71)
.+..+++....||-.||..|+.|-..--+.+.|+.+
T Consensus 19 a~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP~DG 54 (74)
T 1avy_A 19 SVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDG 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hhheeeccccchhhhhhhhhHHHHhcCCCCCCCCCC
Confidence 466788999999999999999997744444444433
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=60.46 E-value=2.6 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHhhc
Q 035166 31 GSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 31 g~RIDdLEksI~dLm~qaG 49 (71)
...||.|++.+.-|.....
T Consensus 41 q~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 41 RLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4457777777777776643
No 37
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.02 E-value=38 Score=24.55 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=16.8
Q ss_pred HHHhhhHHHHHHHHHHHHHhhc
Q 035166 28 DEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 28 DdMg~RIDdLEksI~dLm~qaG 49 (71)
..|-..||+++++..++..||.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhh
Confidence 4577788888888888877764
No 38
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=59.82 E-value=18 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
++-..++.++.+||.|...|+.|..
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777888777777654
No 39
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=59.68 E-value=16 Score=21.37 Aligned_cols=27 Identities=4% Similarity=0.164 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDE 36 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDd 36 (71)
...-.+|...+.+|-+.|+.|-.+|+.
T Consensus 6 ~~~a~~~~~~~~~i~~~l~~l~~~v~~ 32 (94)
T 4i0x_A 6 GALSKFAASLADQMRAGSNSLDRDVQS 32 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444444444433
No 40
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=59.63 E-value=41 Score=23.40 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhc
Q 035166 2 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSR------------IDELEQSINDLRSEMG 49 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~R------------IDdLEksI~dLm~qaG 49 (71)
..||+.|..++.+-... ++.-.-|-.||.| ++|||++||-+....+
T Consensus 22 ~~Fl~aLa~Ei~~~ag~--ee~~~fL~r~G~rlA~r~PLp~~~Tl~dLE~~iN~vla~~~ 79 (167)
T 3aj1_A 22 TLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCC
Confidence 45777777776555432 2233335556666 6999999999998775
No 41
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=58.97 E-value=42 Score=23.32 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhc
Q 035166 2 TAFVQNLLQQMQSRFQTMSESIIAKIDEMGSR------------IDELEQSINDLRSEMG 49 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~R------------IDdLEksI~dLm~qaG 49 (71)
+.|+..|+..|.+-... ++.-.-|-.||.| +++||.+||.+....+
T Consensus 22 ~~FL~aLa~E~~~~ag~--~e~~~fLrrvG~rlA~r~PLp~~~TlaeLE~~iNavla~~~ 79 (167)
T 2z9e_A 22 TLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45777777777555542 2233334556655 6999999999988765
No 42
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=58.50 E-value=29 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=16.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhh
Q 035166 26 KIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~qa 48 (71)
++-+=|.|||+|+..=.+|..++
T Consensus 52 kvLeRGEkLd~L~dkse~L~~~S 74 (96)
T 1sfc_A 52 KVLERDQKLSELDDRADALQAGA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Confidence 33444788888888777777665
No 43
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=58.20 E-value=14 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
..++.+++.++.++++|-+.+.+|..|..
T Consensus 101 ~~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 101 TALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999997654
No 44
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=57.34 E-value=3 Score=29.79 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~d 43 (71)
|..||+++-.+|+.||.++.+
T Consensus 10 ~~~~~~~l~~~~~~l~~~~~~ 30 (215)
T 2gtl_O 10 LIERTNKITTSISHVESLLDD 30 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHhhhhhc
Confidence 556666666666666666654
No 45
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=57.21 E-value=13 Score=23.73 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-.|+++.||-.|.
T Consensus 44 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 73 (156)
T 2fjc_A 44 FKQVHELLEEYYVSVTEAFDTIAERLLQLG 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788999999999999999999998875
No 46
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=56.73 E-value=14 Score=23.58 Aligned_cols=44 Identities=9% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+..+|..++++...-+|+++.||-.|.- ++.++..-+.+.+
T Consensus 43 f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P~~~~~~~~~~s~i~e 90 (153)
T 2chp_A 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASITD 90 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCCCC
Confidence 4567888999999999999999999988863 3445555444443
No 47
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=56.03 E-value=14 Score=23.50 Aligned_cols=43 Identities=9% Similarity=0.318 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIE 51 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e 51 (71)
+..+..+|..++++...-.|+++.||-.|.- ++.++..-+.+.
T Consensus 39 f~~lh~~~ee~~~e~~~~~D~lAERI~~Lgg~P~~~~~~~~~~s~l~ 85 (156)
T 2bk6_A 39 FFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVE 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCCC
Confidence 4567889999999999999999999988753 334444444444
No 48
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=55.66 E-value=14 Score=23.61 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEGS 53 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~~ 53 (71)
+..+..+|....+++..-+|++..||-.|.- +..++..-+.+.+.
T Consensus 49 F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~i~e~ 97 (159)
T 3iq1_A 49 FFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQIKEH 97 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCCCCcc
Confidence 5567888999999999999999999988874 34555555555443
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=55.44 E-value=37 Score=21.53 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=17.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 24 IAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm~q 47 (71)
=.+|.++..|+++.|...++|...
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788888888877777777653
No 50
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=54.97 E-value=15 Score=23.88 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-+|+++.||-.|+
T Consensus 59 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 88 (167)
T 3ak8_A 59 FIAVHEMLDGFRTALTDHLDTMAERAVQLG 88 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998875
No 51
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=54.34 E-value=16 Score=23.64 Aligned_cols=30 Identities=10% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-.|+++.||-.|+
T Consensus 49 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 78 (161)
T 2z90_A 49 FRDLHLQLDELVDFAREGSDTIAERMRALD 78 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456788899999999999999999998775
No 52
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=54.05 E-value=16 Score=23.53 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-.|+++.||-.|.
T Consensus 51 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 80 (161)
T 2yjk_A 51 FIAIHELLDSVVAHAQDYADTAAERIVALG 80 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998775
No 53
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=53.83 E-value=28 Score=21.85 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.+|...-..|++.=.+||.+-..|-+|+.+
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~ 34 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAE 34 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999888765
No 54
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=53.79 E-value=16 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+..+|..++++...-+|+++.||-.|+- ++.++..-+.+.+
T Consensus 48 f~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P~~t~~~~~~~s~i~e 95 (165)
T 2cf7_A 48 FMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFSENSQLKE 95 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
Confidence 5667889999999999999999999988863 3445554444443
No 55
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=53.73 E-value=13 Score=23.29 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIA 25 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~ 25 (71)
+++|+|+||.+++.+-.++-.
T Consensus 8 m~~lmq~mQ~~m~~~QeeL~~ 28 (99)
T 3f42_A 8 LGGLLDGMKKEFSQLEEKNKD 28 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567889999999998887763
No 56
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=53.28 E-value=29 Score=19.76 Aligned_cols=30 Identities=7% Similarity=0.224 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
|.+.-.+|...+.+|-..++.|.+.|+.|.
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555543
No 57
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=53.18 E-value=39 Score=24.43 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=20.8
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRF--------QTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 6 q~LLqqmQ~kF--------q~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
+..|++++.+. +.+-..+-.-|+++..-|..|+++|..|
T Consensus 359 eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 359 DAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544 4444444444566666666666666543
No 58
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=52.78 E-value=29 Score=19.50 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
|.+.-.+|...+++|-..++.|-+.|+.|
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 14 LRGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544
No 59
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=52.74 E-value=19 Score=24.33 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q 035166 19 MSESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI 41 (71)
+.+..+.-++.++.+||+||..|
T Consensus 181 ivd~y~~~l~~i~~~id~lE~~l 203 (266)
T 2hn1_A 181 VVDSYFEALLKISDEIEVLEDEV 203 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444677777777777765
No 60
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=52.59 E-value=16 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-+|+++.||-.|+
T Consensus 78 F~~LHe~fee~~~e~~~haD~lAERIl~LG 107 (211)
T 2c2j_A 78 WYTLHELLQDHYEGISKFADDVAERQLSVG 107 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788999999999999999999998875
No 61
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=52.58 E-value=21 Score=22.69 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+..+|....+++..-+|++..||-.|.- +..++..-+.+.+
T Consensus 36 F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg~P~~t~~~~~~~s~i~e 83 (152)
T 3kwo_A 36 FFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPK 83 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCC
Confidence 4567888999999999999999999988864 3445555455444
No 62
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=52.55 E-value=25 Score=20.82 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=15.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhh
Q 035166 26 KIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dLm~qa 48 (71)
++-+=|.|||+|+..=.+|..++
T Consensus 37 ~vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 37 KVLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444888888887777666554
No 63
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=52.43 E-value=20 Score=23.34 Aligned_cols=45 Identities=11% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEGS 53 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~~ 53 (71)
+..+..+|....+++..-+|++..||-.|.- +..++..-+.+.+.
T Consensus 53 F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~i~e~ 101 (164)
T 4eve_A 53 FFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEE 101 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHcCCCcC
Confidence 5567888999999999999999999988874 34555555555543
No 64
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=52.34 E-value=17 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-.|+++.||-.|+
T Consensus 58 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 87 (175)
T 2wlu_A 58 FLYLHPKMDELLDSLNANLDEVSERLITIG 87 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998875
No 65
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=51.57 E-value=30 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 035166 27 IDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qa 48 (71)
+-+=|.|||+|+..=.+|..++
T Consensus 27 vl~RGekLd~L~~ks~~L~~~s 48 (63)
T 1n7s_A 27 VLERDQKLSELDDRADALQAGA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3444778888887777777665
No 66
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=51.19 E-value=16 Score=20.73 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=18.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~q 47 (71)
..++++-.||+.||..|..|...
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~ 67 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 35778889999999999888643
No 67
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=50.79 E-value=18 Score=23.94 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..+.++...-+|+++.||-.|.
T Consensus 47 F~~lh~~~ee~~~e~~~haD~lAERIl~LG 76 (183)
T 2yw6_A 47 FIGVHEMIDPQVELVRGYADEVAERIATLG 76 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998775
No 68
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=49.88 E-value=20 Score=22.90 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|....++...-.|+++.||-.|.
T Consensus 48 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 77 (162)
T 1o9r_A 48 FIAVHELLDTFRTQLDNHGDTIAERVVQLG 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999998875
No 69
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=49.73 E-value=22 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+..||..|-.+|+.|+..+..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567888888888888888877764
No 70
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=49.62 E-value=55 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKS 62 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 62 (71)
.++++|.-||.-.-.|+.-+.+-++ +....+++|+..
T Consensus 141 ~~l~~l~~~g~~~~~l~~yL~~~~~----~~~~~~~~~~~~ 177 (189)
T 3uno_A 141 TLVRVADRAGANLFELENFVAREVD----VAPAASGAPHAA 177 (189)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSC----CCCCCCCCCCCT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhc----CCCCCCCCCccc
Confidence 3455666666555556655555444 444455555544
No 71
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=49.41 E-value=49 Score=24.60 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
-|+++...++.+-..+-..|...-.+|+.|=++|++|-.+.-
T Consensus 79 ~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~ 120 (463)
T 2d4y_A 79 QFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS 120 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777778888888888888888888887753
No 72
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=48.94 E-value=23 Score=20.45 Aligned_cols=19 Identities=5% Similarity=0.142 Sum_probs=14.8
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 035166 26 KIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dL 44 (71)
.+..+-.||..||..|..+
T Consensus 49 ~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677788999999877765
No 73
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=48.66 E-value=31 Score=19.31 Aligned_cols=8 Identities=13% Similarity=0.335 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 035166 16 FQTMSESI 23 (71)
Q Consensus 16 Fq~MS~~I 23 (71)
|...+.+|
T Consensus 21 ~~~~~~~i 28 (93)
T 4ioe_A 21 FKNAAGEA 28 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 74
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=48.61 E-value=8.2 Score=27.52 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dL 44 (71)
...+.|+++|-.|+.+|||.+..|
T Consensus 317 ~~~~~~l~~~~~~~~~l~~~~~~l 340 (341)
T 3eh0_A 317 AALVMNIDDMSKRLKSLERKVNQQ 340 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhc
Confidence 455788999999999999987643
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.56 E-value=26 Score=19.67 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQT 18 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~ 18 (71)
|+..|.++-.-+..
T Consensus 25 VD~FLd~v~~~~~~ 38 (57)
T 2wuj_A 25 VNEFLAQVRKDYEI 38 (57)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666665555554
No 76
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=48.37 E-value=17 Score=25.46 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRID 35 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RID 35 (71)
-.+.++++.++.. .+.+..||+.||-+|=
T Consensus 33 ~eiV~~~~~~~~~-~~ev~~rLe~mGy~IG 61 (200)
T 1sz7_A 33 GALVTQLCKDYEN-DEDVNKQLDKMGFNIG 61 (200)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHhCHHHh
Confidence 3567788888877 5668899999998874
No 77
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=48.33 E-value=29 Score=20.97 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk 39 (71)
+..+..+|...+.+...-+|.+..||-.|.-
T Consensus 32 f~~l~~~~~~~~~ee~~had~laeri~~lGg 62 (142)
T 1ji5_A 32 FFTLHEKFEELYTESATHIDEIAERILAIGG 62 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4567888999999999999999999988854
No 78
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=48.30 E-value=25 Score=21.84 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI 41 (71)
.+|||+...+-+. -+.|||||-.+
T Consensus 30 ~~~~~~~~~~~~~-----------EKTIDDLEDkL 53 (77)
T 3mtu_E 30 EALQQLRVNYGSF-----------VSEYNDLEEKV 53 (77)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4677777766652 34566666544
No 79
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=48.08 E-value=37 Score=19.42 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 23 I~~riDdMg~RIDdLEk 39 (71)
|-.|++++..|-+.|-.
T Consensus 83 i~~~l~~l~~rw~~L~~ 99 (118)
T 3uul_A 83 IQEQMTLLNARWEALRV 99 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 80
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=48.07 E-value=27 Score=21.86 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|...+++...-.|++..||-.|.
T Consensus 41 f~~lh~~~~~~~~ee~~had~iaErI~~lG 70 (158)
T 2c41_A 41 FRDLHLLFEEQGSEVFAMIDELAERSLMLD 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788899999999999999999997764
No 81
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=47.85 E-value=46 Score=21.46 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
.....++-++-.+||.|+..|......
T Consensus 43 ~~~a~~v~~~d~~iD~l~~~i~~~~~~ 69 (227)
T 1t72_A 43 VELAEEVIKGDDTIDLLEVDIERRCIR 69 (227)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344556666777888888888775543
No 82
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.17 E-value=57 Score=21.30 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q 035166 18 TMSESIIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 18 ~MS~~I~~riDdMg~RIDdLEksI~ 42 (71)
.|-+.+..-+...-+||+.||++.+
T Consensus 75 ~lq~KM~~nL~~v~~RL~~Le~~~~ 99 (116)
T 2dl1_A 75 QMQQKMKETLQNVRTRLEILEKGLA 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444444556677788999999876
No 83
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=46.89 E-value=30 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+...|...+++...-+|++..||-.|.
T Consensus 39 f~~lh~~~~~~~~ee~~had~laeri~~lG 68 (149)
T 1n1q_A 39 FFTLHEKFEELYTEASGHIDTLAERVLSIG 68 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678899999999999999999998774
No 84
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=46.80 E-value=37 Score=18.96 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
|.+.-.+|..-+.+|-..+++|-+.|+.|
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445554444444444444444443
No 85
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=46.77 E-value=31 Score=21.07 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+...|...+++...-+|.+..||-.|.
T Consensus 36 f~~lh~~~~~~~~ee~~had~laeri~~lG 65 (146)
T 1jig_A 36 FFTLHEKFEEFYNEAGTYIDELAERILALE 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345678889999999999999999997774
No 86
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=46.67 E-value=11 Score=27.45 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dL 44 (71)
...+.|+.+|-.|++.|||.+..|
T Consensus 339 ~~~~~~l~~~~~~~~~l~k~~~~~ 362 (372)
T 3pmo_A 339 AARIRQLDDMARRLQQLEKRLAAV 362 (372)
T ss_dssp HHHHHTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345688999999999999988765
No 87
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=46.52 E-value=78 Score=22.67 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 035166 28 DEMGSRIDELEQSINDLRSEMGIEGSAS 55 (71)
Q Consensus 28 DdMg~RIDdLEksI~dLm~qaG~e~~~~ 55 (71)
+---+++++||+-++.+-+...-=.|..
T Consensus 120 ~~Ads~~~~lekKvn~aq~kLs~L~P~d 147 (201)
T 3u0c_A 120 KNADSKIKDLENKINQIQTRLSELDPES 147 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3445677777777777655544333333
No 88
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=44.94 E-value=64 Score=23.75 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEM-GSRIDELEQSINDLRS 46 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdM-g~RIDdLEksI~dLm~ 46 (71)
-+++++.||..+|..+..-|+.- ..|+.|+-++|.+.+.
T Consensus 324 ~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle 363 (386)
T 4akv_A 324 EADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLR 363 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999887665 7788999888888765
No 89
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=44.69 E-value=13 Score=23.54 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+..+|..++++...-+|+++.||-.|.
T Consensus 36 f~~lh~~~ee~~~e~~~~aD~lAERI~~Lg 65 (151)
T 2pyb_A 36 FFVIHKKTQKLYEYIEKIIDIVAERSRMLG 65 (151)
T ss_dssp THHHHHHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678899999999999999999997764
No 90
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=44.29 E-value=26 Score=23.86 Aligned_cols=43 Identities=12% Similarity=0.365 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIE 51 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e 51 (71)
+..+..+|..++++...-.|+++.||-.|+- +..++..-+.+.
T Consensus 74 F~~LH~~~ee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~s~i~ 120 (199)
T 2xgw_A 74 FLYLHPKMDELLDSLNANLDEVSERLITIGGAPYSTLAEFSKHSKLD 120 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
Confidence 4567888999999999999999999988753 334444444443
No 91
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=43.87 E-value=15 Score=24.63 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q 035166 19 MSESIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI 41 (71)
+.+..+.-+++++.+||+||..|
T Consensus 156 ivd~y~~~l~~l~~~id~lE~~l 178 (264)
T 3nvo_A 156 LTDHASEFIEELHDKIIDLEDNL 178 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445677777777777766
No 92
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=43.83 E-value=24 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=9.3
Q ss_pred HHHHHHhhhHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSI 41 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI 41 (71)
.-++.++.+||+||..|
T Consensus 171 ~~l~~i~~~id~lE~~l 187 (280)
T 4egw_A 171 RILMNLEDELEELEDKL 187 (280)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33555566666666543
No 93
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=43.75 E-value=43 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=12.3
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 035166 28 DEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 28 DdMg~RIDdLEksI~dLm~q 47 (71)
++...-|+.+++||..|-.+
T Consensus 382 ~~~~~~~~~~~~~i~~~~~~ 401 (463)
T 2xz3_A 382 HVLEQDQQRLITAINQTHYN 401 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777666544
No 94
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=43.71 E-value=33 Score=22.35 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+..+|...+++...-+|++..||-.|.- +..++..-+.+++
T Consensus 60 f~~lh~~~ee~~~e~~~haD~laERI~~LGg~P~~~~~~~~~~s~i~e 107 (182)
T 1tjo_A 60 FRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEASVDV 107 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhCCCCC
Confidence 4567888999999999999999999988863 3444554444444
No 95
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=43.36 E-value=53 Score=19.82 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHhh
Q 035166 9 LQQMQSRFQTMSESIIAKID---EMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riD---dMg~RIDdLEksI~dLm~qa 48 (71)
|+++|..-+..-+-+..-|| +=|.|||+|+..=.+|-.++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s 49 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGA 49 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 34444444443333333333 33666777766666665554
No 96
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=43.18 E-value=56 Score=20.01 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+..+-+-...-+...-.|+..+..||+.||++|.=|=++
T Consensus 29 I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAk 67 (75)
T 3p8c_E 29 IKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEAR 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444556678888999999999998766444
No 97
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=42.51 E-value=22 Score=24.37 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+..+|..++++...-+|++..||-.|+- ++.++..-+.+.+
T Consensus 91 F~~LHe~~ee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~s~I~e 138 (207)
T 2c2u_A 91 FRDLHLAYDEFIAEIFPSIDEQAERLVALGGSPLAAPADLARYSTVQV 138 (207)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTTBCCCCSHHHHHHHCSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCCC
Confidence 4567888999999999999999999988863 3444544444443
No 98
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=42.21 E-value=49 Score=19.13 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=12.2
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 035166 30 MGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qa 48 (71)
=|.|||+|...=.+|-.++
T Consensus 34 RgekLd~L~~ks~~L~~~s 52 (74)
T 2nps_A 34 RGERLDELQDKSESLSDNA 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3667777776666666554
No 99
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=42.08 E-value=20 Score=24.04 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=8.2
Q ss_pred HHHHhhhHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSI 41 (71)
Q Consensus 27 iDdMg~RIDdLEksI 41 (71)
++.++.+||+||..|
T Consensus 188 l~~i~~~id~lE~~v 202 (269)
T 2bbh_A 188 LEKIDDEIDVLEEEV 202 (269)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.67 E-value=58 Score=19.79 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 9 LQQMQSRFQTMSESII---AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~---~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+.++|.-++.--.+|- .+|++.=.+|++.|..|..|-.+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554444444 458999999999999999998765
No 101
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.09 E-value=1.3e+02 Score=23.55 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCCC
Q 035166 7 NLLQQMQSRFQTMSESI-------------IAKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSKS 62 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I-------------~~riDdMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~~ 62 (71)
.-+++++.+-..+|.+| +.++.+++.+|.+||+.+.++-.+. .+.+.+.+..|.-.
T Consensus 47 ~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~ 120 (485)
T 3qne_A 47 FDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQ 120 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 34667777777777665 3456677778877777776664433 45566666666443
No 102
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=40.68 E-value=73 Score=21.78 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
|.|.-..-+.+..+||..-..+..|++.+..|+..
T Consensus 177 Q~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q~ 211 (412)
T 3okg_A 177 QRRIVAKVEALMERVREVRRLRAEAQKDTELLMQT 211 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556666666666666666666665543
No 103
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=40.55 E-value=10 Score=26.46 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCC
Q 035166 16 FQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53 (71)
Q Consensus 16 Fq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~ 53 (71)
||.+..|+|.|+=.+ |.++|+.+..|+...|.+..
T Consensus 141 FQDLTGQ~I~KVi~l---v~~vE~~L~~ll~~~~~~~~ 175 (214)
T 1kmi_Z 141 FQDLTGQVIKRMMDV---IQEIERQLLMVLLENIPEQE 175 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTTC-------
T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCccc
Confidence 999999999997555 67899999999988876653
No 104
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.52 E-value=55 Score=20.85 Aligned_cols=39 Identities=8% Similarity=0.335 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEM---GSRIDELEQSINDLR 45 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdM---g~RIDdLEksI~dLm 45 (71)
+.|...+ .+++.+-..+..+++.. -.+|.++++.+..|-
T Consensus 12 ~ql~~~~-qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 12 EKLAYEY-QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHHHHH-HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333 56667777888888889 999999999998864
No 105
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=40.33 E-value=9.5 Score=25.39 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhhH
Q 035166 6 QNLLQQMQSRFQTMS---ESIIAKIDEMGSRI 34 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS---~~I~~riDdMg~RI 34 (71)
-.+.++++.++.... +.+..||+.||-+|
T Consensus 14 ~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~i 45 (160)
T 2bjn_A 14 NEMVSGVYKSAEQGEVENGRCITKLENMGFRV 45 (160)
T ss_dssp HHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHhhhHh
Confidence 456677788877665 36889999998776
No 106
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=39.54 E-value=64 Score=19.65 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 19 MSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
-+...-.|+.++..||+.||+.+.=|=+
T Consensus 39 F~~sce~KLa~ln~kL~~lE~~L~iLEA 66 (73)
T 3pp5_A 39 FELSTRNKLSDLNEKLTILDRQVDYLEA 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567888888899999988875543
No 107
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=39.17 E-value=53 Score=18.59 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=13.5
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 035166 29 EMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~qa 48 (71)
+=|.|||+|...=.+|..++
T Consensus 34 ~RgekLd~L~~ks~~L~~~s 53 (65)
T 1gl2_A 34 ARGENLDHLRNKTEDLEATS 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34777777777777766554
No 108
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=38.58 E-value=47 Score=20.82 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+...|...+++...-+|++..||-.|.
T Consensus 38 f~~lh~~~~~~~~ee~~had~iaERI~~lG 67 (156)
T 2d5k_A 38 FFSLHVKFEELYNEASQYVDELAERILAVG 67 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678889999999999999999998775
No 109
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=38.18 E-value=73 Score=19.97 Aligned_cols=49 Identities=12% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHHHHHHHHHHHHHhhccCC
Q 035166 4 FVQNLLQQMQSRFQTMSE--------SIIAKIDEMGSRIDELEQSINDLRSEMGIEG 52 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~--------~I~~riDdMg~RIDdLEksI~dLm~qaG~e~ 52 (71)
.++.|+.-|+..++-+.. .|..+....-.+|..+|+....++...|+..
T Consensus 19 ~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~ 75 (154)
T 3opc_A 19 LVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLAS 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 456667777777776655 4556666777889999999999999988763
No 110
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=37.94 E-value=78 Score=20.22 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
.....++-+.-.+||.|+..|.+.....
T Consensus 39 ~~~a~~v~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 39 KEMAELIINKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455666667778999999888877654
No 111
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=37.83 E-value=82 Score=20.43 Aligned_cols=29 Identities=0% Similarity=0.247 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhHHHHHHH----HHHHHHhhccC
Q 035166 23 IIAKIDEMGSRIDELEQS----INDLRSEMGIE 51 (71)
Q Consensus 23 I~~riDdMg~RIDdLEks----I~dLm~qaG~e 51 (71)
+-.||+.+..|||+++|. |+--+.-+++.
T Consensus 37 ~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~LP 69 (129)
T 2gr7_A 37 LAGQVNNLEGKVNKVGKRADAGTASALAASQLP 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345778888888888887 44455555553
No 112
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.82 E-value=71 Score=19.67 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.+..+++.+-..+..+++..-..|.++++.+..|-.
T Consensus 8 ~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 8 AQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334466777777888888888888888888887765
No 113
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=37.76 E-value=36 Score=24.19 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCC
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSL 58 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~~ 58 (71)
.++++=|+.|.--+..+...|..+-.|...|=-+|+.||.-.|..-||.+..
T Consensus 89 ~vledqq~~~~P~~~~l~~~L~~~~l~v~~la~~l~~im~~L~~~iPpee~~ 140 (187)
T 1cnt_1 89 RLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEAD 140 (187)
T ss_dssp HHHHHHHTTTSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSS
T ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3344444444444455778899999999999999999999999887765553
No 114
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.18 E-value=75 Score=22.29 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 20 SESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
-+.+..++.++..|+.+|+..+..|-.+
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555555555655555555555544
No 115
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=37.13 E-value=82 Score=20.20 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
...|...-+-|.+-......++-+.-..||.|+..|......
T Consensus 24 ~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 65 (217)
T 1xwm_A 24 EVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALW 65 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333333343333445556666777899999888875554
No 116
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=36.63 E-value=69 Score=19.22 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=13.6
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 035166 30 MGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 30 Mg~RIDdLEksI~dLm~qa 48 (71)
..+|++.||.+|..++++.
T Consensus 11 L~rRVlqLE~sl~gI~SqI 29 (64)
T 3hrn_A 11 LVRRVDRMEHSIGSIVSKI 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567778888777777654
No 117
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.32 E-value=1.3e+02 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
+-..++.+.++|++|+..|.+|+....
T Consensus 31 L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335567788889999999999887643
No 118
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=36.22 E-value=1.1e+02 Score=22.10 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEM-GSRIDELEQSINDLRS 46 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdM-g~RIDdLEksI~dLm~ 46 (71)
+++.+.||..+|..+..-|+.- ..|+.|+-+++.+...
T Consensus 305 ~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~ 343 (366)
T 3dyt_A 305 KQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLE 343 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998776554 6678888888877654
No 119
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=36.12 E-value=66 Score=18.86 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
-.++...+..|-+.|++|-+.|+.|
T Consensus 20 a~~~~~~~~~i~~~l~~L~~~v~~L 44 (103)
T 4i0x_B 20 TSRARGFKEFVTENLDQLESRAQKL 44 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 120
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=36.05 E-value=28 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=6.7
Q ss_pred HhhhHHHHHHHHHH
Q 035166 30 MGSRIDELEQSIND 43 (71)
Q Consensus 30 Mg~RIDdLEksI~d 43 (71)
|++|+.-+|+.+.+
T Consensus 8 m~~Rl~kVE~qv~~ 21 (33)
T 2ovc_A 8 MMGRVVKVEKQVQS 21 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445455544443
No 121
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=35.84 E-value=17 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.+-+|+|++..||++||..+.++..
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q 27 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKR 27 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999988764
No 122
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=35.38 E-value=72 Score=19.06 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=14.2
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dL 44 (71)
.|+..+..+||.+|+-.+.-
T Consensus 34 ~KF~qL~nKi~k~~kr~~aG 53 (64)
T 3lt7_A 34 HKFHQLENRLDKLEKRLLKL 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45666777888888876543
No 123
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=35.03 E-value=24 Score=21.80 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhcc
Q 035166 34 IDELEQSINDLRSEMGI 50 (71)
Q Consensus 34 IDdLEksI~dLm~qaG~ 50 (71)
||.|.|.+-|-++.+|+
T Consensus 71 ~DN~~K~~~Dal~~~Gv 87 (120)
T 2h8e_A 71 LDNLQKAAFDALTKAGF 87 (120)
T ss_dssp THHHHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhcCCCc
Confidence 89999999999999985
No 124
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=34.56 E-value=92 Score=20.05 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKS 62 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 62 (71)
|++.++.. |.+-..|-..++.+|..||..+=.+++.++. +.+... +++.+|+..
T Consensus 124 ~l~~~l~e-qe~~~~~l~~~l~~l~~~g~~l~~~d~~l~~---~~~~~~-~~~~~~~~~ 177 (189)
T 3oj5_A 124 FMQWFLQE-QIEEVALMATLVRVADRAGANLFELENFVAR---EVDVAP-AASGAPHAA 177 (189)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---HC--------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhCchHhHHHHHHHH---hhCCCC-CCCCCCccc
Confidence 33444443 4455555566777787777766566666543 444444 566666654
No 125
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=34.51 E-value=62 Score=18.01 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=12.9
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 035166 29 EMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 29 dMg~RIDdLEksI~dLm~qa 48 (71)
+=|.|||+|...=.+|..++
T Consensus 27 ~RgekLd~L~~ks~~L~~~s 46 (61)
T 3b5n_A 27 ERGERLTSIEDKADNLAVSA 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 34667777777666666554
No 126
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.45 E-value=62 Score=18.04 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
+-.|-.+|-.|..+||.-|+-|-++
T Consensus 8 LE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677778888888887776554
No 127
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=34.36 E-value=98 Score=20.27 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 20 SESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
......++-+.-.+||.|+..|.+.....
T Consensus 38 d~~~a~~V~~~d~~iD~l~~~I~~~~~~l 66 (235)
T 1sum_B 38 NESLAREVIADEEVVDQMEVEIQEKAMEV 66 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455666667778888888887766543
No 128
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=34.16 E-value=1.1e+02 Score=20.77 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=7.2
Q ss_pred HHHHhhhHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSIND 43 (71)
Q Consensus 27 iDdMg~RIDdLEksI~d 43 (71)
|+....+|.+|...+..
T Consensus 115 I~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 115 INAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 129
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=34.06 E-value=1.1e+02 Score=20.98 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 035166 9 LQQMQSRFQTMSESII 24 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~ 24 (71)
+.+|...++.+...+-
T Consensus 9 ~~em~~~i~~i~~~~~ 24 (213)
T 3g67_A 9 FVNLNRLFQELVGDFQ 24 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 130
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=33.99 E-value=1.2e+02 Score=22.51 Aligned_cols=16 Identities=6% Similarity=0.283 Sum_probs=7.8
Q ss_pred HHHHHHhhhHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQS 40 (71)
Q Consensus 25 ~riDdMg~RIDdLEks 40 (71)
.+|+++...|.+|+..
T Consensus 40 ~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555543
No 131
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.84 E-value=84 Score=25.66 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHhh
Q 035166 11 QMQSRFQTMSESIIAK-------IDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~r-------iDdMg~RIDdLEksI~dLm~qa 48 (71)
++.+.|..+|+++-.| ||.-=++|..|+++|.++..++
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555444333 3333367777888888876543
No 132
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=33.75 E-value=59 Score=21.12 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhccCC
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQ----SINDLRSEMGIEG 52 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEk----sI~dLm~qaG~e~ 52 (71)
+..+..+|...+.+...-+|.+..||-.|.- ++.++..-+.+.+
T Consensus 59 f~~lh~~~~~~~~ee~~had~laErI~~LGg~p~~~~~~~~~~s~i~e 106 (192)
T 2vxx_A 59 FYPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLAALCCFTP 106 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCcCCC
Confidence 4456778888888888889999999887754 2344444344443
No 133
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=33.50 E-value=62 Score=18.63 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=19.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 24 IAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+.++.|=|.||+.|+.--.+|..+|
T Consensus 24 i~kvlERGekL~~L~dkT~~L~~~A 48 (63)
T 1urq_A 24 RLALDERGQKLSDLEERTAAMMSSA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888999998888888765
No 134
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=33.17 E-value=97 Score=19.87 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
.|...|...-+-|.+.......++-++-..||+|+..+..-
T Consensus 129 ~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~i~~~ 169 (227)
T 1t72_A 129 IVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERE 169 (227)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544555556666666777777666554
No 135
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=32.67 E-value=26 Score=20.10 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=12.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~q 47 (71)
+|+||+. -||.|+.+|-.+
T Consensus 25 ~r~DEV~----~Le~NLrEL~~e 43 (51)
T 1yzm_A 25 GRMDEVR----TLQENLRQLQDE 43 (51)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred CCcHHHH----HHHHHHHHHHHH
Confidence 4556643 488888888665
No 136
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=32.46 E-value=1.5e+02 Score=21.89 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 035166 24 IAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 24 ~~riDdMg~RIDdLEksI~d 43 (71)
-.++.+.-+.|-.||.+|+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~ 255 (268)
T 2yo3_A 236 EDKIEEILSKIYHIENEIAR 255 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544
No 137
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.03 E-value=65 Score=22.17 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=17.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qa 48 (71)
..|+....||..||+.|.++|.+.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777654
No 138
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.02 E-value=78 Score=18.47 Aligned_cols=24 Identities=0% Similarity=0.202 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
|-.+|..+..+++.+++.+.++..
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555544
No 139
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=31.49 E-value=68 Score=22.19 Aligned_cols=19 Identities=16% Similarity=0.503 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI 41 (71)
|..++|..-+.||.|+..+
T Consensus 381 Iv~~l~~~~~~id~l~~~~ 399 (464)
T 2y7c_A 381 IVRRVEQLFAYADTIEKQV 399 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444455544443
No 140
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=31.16 E-value=29 Score=19.71 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=13.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~q 47 (71)
+|.||++ -|++|+.+|-.+
T Consensus 24 rRfdEV~----~L~~NL~EL~~E 42 (48)
T 3v1a_A 24 GRMDEVR----TLQENLHQLMHE 42 (48)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred cChHHHH----HHHHHHHHHHHH
Confidence 4566654 489999988765
No 141
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=31.13 E-value=48 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQTMSESIIAK 26 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~r 26 (71)
..||..+-++|-..-+.|-.+
T Consensus 183 ~~lld~ivd~y~~~l~~l~~~ 203 (363)
T 2iub_A 183 YSLIDALVDDYFVLLEKIDDE 203 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333
No 142
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=31.05 E-value=75 Score=19.68 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 035166 16 FQTMSESIIAKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 16 Fq~MS~~I~~riDdMg~RIDdLEksI~dLm 45 (71)
|+.+....-.||..--..|++||+.+.-+-
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s 39 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQA 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555556666677778888888888877654
No 143
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=30.94 E-value=76 Score=17.95 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI 41 (71)
.|-.|++++..|-+.|-..+
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444433
No 144
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=30.90 E-value=54 Score=21.22 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 035166 2 TAFVQNLLQQMQSRFQTMSE 21 (71)
Q Consensus 2 T~~Vq~LLqqmQ~kFq~MS~ 21 (71)
+.++++||++++.+...++.
T Consensus 55 ~~l~~~Ll~eL~~~~~~~~~ 74 (124)
T 1bgf_A 55 TILLQNLLIQLDEQLGRVSK 74 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 56899999999999876543
No 145
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=30.45 E-value=96 Score=19.00 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 6 QNLLQQMQSRFQ--------TMSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 6 q~LLqqmQ~kFq--------~MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
+.=|++++..|. .....+..-++++..-|+||+++|.=
T Consensus 16 ~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 16 KEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555553 22344555555566666666666654
No 146
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.28 E-value=1.8e+02 Score=22.07 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCCC
Q 035166 8 LLQQMQSRFQTMSESII-------------AKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSKS 62 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~-------------~riDdMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~~ 62 (71)
-+++++.+-..+|.+|- .++-+++.+|.+||+.+.++-.+. .+.+.+.+.+|.-.
T Consensus 46 ~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 46 EINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 35666777777776654 445667777877777777665553 56667777766544
No 147
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=29.69 E-value=57 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
+..+...|...+.+-..-.|.+..||..|
T Consensus 37 ~~~l~~~f~~~a~ee~~had~l~eri~~l 65 (154)
T 3r2k_A 37 FSKLYERLNHEMEEETQHADALLRRILLL 65 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677778888888777788888877655
No 148
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=29.64 E-value=1.8e+02 Score=21.76 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCCC
Q 035166 7 NLLQQMQSRFQTMSESII-------------AKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSKS 62 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~-------------~riDdMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~~ 62 (71)
.-+++++.+-..+|.+|- .++-+++.+|.+||+.+.++-.+. .+.+.+.+..|.-.
T Consensus 44 ~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~ 117 (425)
T 2dq3_A 44 KRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGE 117 (425)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 346677777778887764 335566677777776666654443 46666767666543
No 149
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=29.41 E-value=1.3e+02 Score=20.28 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
-|.+|...-+.+...|+..-.+|+.|++-=..||.++
T Consensus 380 eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 380 EQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777666777777777777777777777777665
No 150
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.22 E-value=1.1e+02 Score=19.34 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 20 SESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 20 S~~I~~riDdMg~RIDdLEksI~d 43 (71)
...+-..|++|.++|+.||.-...
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666665544
No 151
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=29.08 E-value=50 Score=22.98 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHhhccCCCCC
Q 035166 15 RFQTMSESIIAKI----------DEMGSRIDELEQSINDLRSEMGIEGSAS 55 (71)
Q Consensus 15 kFq~MS~~I~~ri----------DdMg~RIDdLEksI~dLm~qaG~e~~~~ 55 (71)
-|++..+.--+-+ |---+.+|+||+-|+.+-+...-=.|.+
T Consensus 49 eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~ 99 (158)
T 3tul_A 49 EFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPAD 99 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3777766444444 4445788899999888766554333333
No 152
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=28.88 E-value=44 Score=21.98 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELE 38 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLE 38 (71)
+..+...|...+++...-+|++..||-.|.
T Consensus 56 f~~lh~~f~~~~~ee~~haD~iaERI~~LG 85 (188)
T 2clb_A 56 GEGLKEIAEDARLEDRLHFELMTQRIYELG 85 (188)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344677888999999999999999998875
No 153
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=28.18 E-value=1.2e+02 Score=19.26 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=11.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~ 46 (71)
..+.+.-.+|..++.+|..++.
T Consensus 119 ~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 119 GALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555554
No 154
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.14 E-value=1.1e+02 Score=19.27 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
+-.||-++-..+.+|-|.++..+.+..
T Consensus 49 LR~kl~~~~~~t~~l~k~ts~~lk~L~ 75 (130)
T 2dnx_A 49 LQENLQQLQHSTNQLAKETNELLKELG 75 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666665544
No 155
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.12 E-value=49 Score=23.40 Aligned_cols=27 Identities=7% Similarity=0.395 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEM 30 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdM 30 (71)
++-.+|..+-++|...-+.|-.++|++
T Consensus 157 ll~~lld~ivd~~~~~l~~l~~~i~~l 183 (339)
T 4ev6_A 157 LLYHILNEITRSYSRILMNLEDELEEL 183 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666655544444444443
No 156
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=27.80 E-value=77 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
.+..+|.+|-++|..|+..+..|..
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455677777777777777776654
No 157
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=27.46 E-value=50 Score=19.97 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=15.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 035166 27 IDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~q 47 (71)
|++.=.+||++-..|-+|+++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~ 27 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAE 27 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777654
No 158
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=27.00 E-value=1e+02 Score=18.13 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
..+...|...+.+-..-.|.+..||..|
T Consensus 42 ~~l~~~f~~~a~ee~~Ha~~l~e~i~~l 69 (149)
T 2qqy_A 42 QVLKPFFESEISDEQGHALYLAEKIKTL 69 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777777777777777777554
No 159
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=26.86 E-value=65 Score=19.90 Aligned_cols=34 Identities=6% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhc
Q 035166 15 RFQTMSESIIAKIDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 15 kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qaG 49 (71)
+|..=...+++-|+..-..||+++. +..++...|
T Consensus 65 ~~~~h~~~v~~al~~~v~~ldd~~~-l~~~l~~l~ 98 (146)
T 3g46_A 65 KLRGHSITLMYALQNFIDQLDNPDD-LVCVVEKFA 98 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Confidence 3444456788889999999999885 766666655
No 160
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=26.71 E-value=44 Score=21.26 Aligned_cols=16 Identities=38% Similarity=0.835 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhc
Q 035166 34 IDELEQSINDLRSEMG 49 (71)
Q Consensus 34 IDdLEksI~dLm~qaG 49 (71)
+++|.++|..|..+.|
T Consensus 80 ~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 80 LGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5566666666666665
No 161
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=26.51 E-value=20 Score=26.65 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qa 48 (71)
..++.+..+|..||..+..++...
T Consensus 37 ~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 37 SILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456789999999999999887764
No 162
>3lrd_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT D40N/ double-mutant, structural protein; HET: PGE; 2.15A {Euprosthenops australis} PDB: 3lr6_A* 2lpj_A 3lr2_A 2lpi_A 4fbs_A 3lr8_A*
Probab=26.37 E-value=1.1e+02 Score=20.52 Aligned_cols=29 Identities=17% Similarity=0.464 Sum_probs=22.9
Q ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHh
Q 035166 3 AFVQNLLQQ----------MQSRFQTMSESIIAKIDEMG 31 (71)
Q Consensus 3 ~~Vq~LLqq----------mQ~kFq~MS~~I~~riDdMg 31 (71)
.|+.++++. -++.+..+.+.|+.-+|-|+
T Consensus 18 ~Fi~~f~~~i~~s~~F~~~q~~Dm~sI~~ti~~a~d~~~ 56 (137)
T 3lrd_A 18 NFMNSFMQGLSSMPGFTASQLDNMSTIAQSMVQSIQSLA 56 (137)
T ss_dssp HHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHhHHHHHHHHHHHHHhcc
Confidence 456666543 36779999999999999999
No 163
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.24 E-value=75 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=10.9
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~ 46 (71)
.+.+-..|+++++.|.+|..
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~ 96 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKH 96 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544
No 164
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.14 E-value=76 Score=17.64 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=7.9
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 035166 26 KIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 26 riDdMg~RIDdLEksI~dL 44 (71)
+||-..+.|.--|+.|++|
T Consensus 10 kI~kVdrEI~Kte~kI~~l 28 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKL 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 165
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=26.13 E-value=35 Score=20.16 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=13.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+|+||+. -||.|+.+|-.+.
T Consensus 32 ~R~DEV~----~Le~NLrEL~~ei 51 (59)
T 1z0j_B 32 GRLDEVE----VLTENLRELKHTL 51 (59)
T ss_dssp SCHHHHH----HHHHHHHHHHHHH
T ss_pred CChHHHH----HHHHHHHHHHHHH
Confidence 4566643 4889999887653
No 166
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=26.11 E-value=1e+02 Score=17.86 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=15.3
Q ss_pred HHHHHHHH----HHhhhHHHHHHHHHHHH
Q 035166 21 ESIIAKID----EMGSRIDELEQSINDLR 45 (71)
Q Consensus 21 ~~I~~riD----dMg~RIDdLEksI~dLm 45 (71)
..|+.|++ .+-.-|-.|||.|+.|-
T Consensus 23 enivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 45666663 24455667777777664
No 167
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric acid cycle structural genomics target, NYSGXRC, PSI; 2.70A {Escherichia coli} SCOP: e.44.1.1
Probab=26.06 E-value=88 Score=23.66 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHH-HHHHHHH
Q 035166 10 QQMQSRFQTMSESII-----AKIDEMGSRIDELEQ-SINDLRS 46 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~-----~riDdMg~RIDdLEk-sI~dLm~ 46 (71)
.++.+||..+...++ .||=+.-.+++.|+. .+.+|+.
T Consensus 437 ~~l~~KF~~~~~~~~~~~~~~~i~~~~~~le~~~~~~v~~l~~ 479 (483)
T 1szq_A 437 PKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLD 479 (483)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHCHHHHHHSBHHHHHT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhChhccccCCHHHHHH
Confidence 578899987765443 444455556666776 6788775
No 168
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=25.63 E-value=56 Score=21.78 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q 035166 17 QTMSESIIAKIDEMGSRIDELEQ 39 (71)
Q Consensus 17 q~MS~~I~~riDdMg~RIDdLEk 39 (71)
+.+-..|-.++|++++.+++|.+
T Consensus 58 qel~~~l~~~ld~l~~~~~~l~~ 80 (165)
T 1gs9_A 58 QELRALMDETMKELKAYKSELEE 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555543
No 169
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.38 E-value=39 Score=20.40 Aligned_cols=20 Identities=25% Similarity=0.616 Sum_probs=13.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+|+||+ .-||.|+.+|-.+.
T Consensus 43 ~r~DEV----~tLe~NLrEL~~ei 62 (69)
T 1z0k_B 43 GRMDEV----RTLQENLRQLQDEY 62 (69)
T ss_dssp TCHHHH----HHHHHHHHHHHHHH
T ss_pred cCcHHH----HHHHHHHHHHHHHH
Confidence 455664 34889999887653
No 170
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.26 E-value=1.5e+02 Score=19.52 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhccCCCCCCC
Q 035166 22 SIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPS 57 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~dLm~qaG~e~~~~~~ 57 (71)
.+..|+|-.-.+|-+||..|+.|-..--+.+.|+..
T Consensus 61 ~~t~~v~t~k~~i~~~e~~vqalq~ag~i~~AP~DG 96 (113)
T 1aa0_A 61 SVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDG 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCSS
T ss_pred hhheeecccccchhhhhhhhHHHHhcCCCCCCCCCC
Confidence 456677777777888888887775444444444433
No 171
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=25.20 E-value=1.9e+02 Score=20.67 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRS 46 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~ 46 (71)
+.+|...||.|-+-+++-..--|.+|+.|+.+-+
T Consensus 88 ~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~ 121 (201)
T 3u0c_A 88 QQKNLEFSDKINTLLSETEGLTRDYEKQINKLKN 121 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 5679999999999999999999999999887643
No 172
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=24.94 E-value=47 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 035166 4 FVQNLLQQMQSRFQTMSESIIAKIDEMGSRI 34 (71)
Q Consensus 4 ~Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RI 34 (71)
....+.++++.++.+.+ .+..||+.||-+|
T Consensus 65 Lf~EmV~~~~~~~~~~~-e~e~rLe~mGy~I 94 (283)
T 3cue_B 65 LFQEMISQLHRTCKTAG-DFETKLSDYGHNI 94 (283)
T ss_dssp HHHHHHHHHHHHCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchH-HHHHHHHHhhhhh
Confidence 34567778888887765 4778888887765
No 173
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=24.78 E-value=33 Score=19.02 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHH
Q 035166 31 GSRIDELEQSIND 43 (71)
Q Consensus 31 g~RIDdLEksI~d 43 (71)
..||++||+.|.-
T Consensus 7 ~d~I~aiEQqiyv 19 (40)
T 1gp8_A 7 AANKDAIRKQMDA 19 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3589999998864
No 174
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=24.76 E-value=79 Score=19.21 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
+..+...|...+.+-..-.|.+..||..|
T Consensus 39 ~~~l~~~f~~~a~ee~~Had~l~e~i~~l 67 (161)
T 3uoi_A 39 FTELAAHTRAESFDEMRHAEEITDRILLL 67 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566677777777777777777777554
No 175
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=24.65 E-value=1.1e+02 Score=17.96 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=10.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 035166 25 AKIDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm 45 (71)
.+++....++.+|++.+..++
T Consensus 91 ~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 91 RQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555
No 176
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=24.32 E-value=1.3e+02 Score=19.22 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSIN 42 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~ 42 (71)
+-.+++++..|+++||+.++
T Consensus 143 l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 143 YTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44556778888888887764
No 177
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=24.13 E-value=89 Score=21.91 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=30.8
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHH-Hhhcc
Q 035166 8 LLQQMQSRFQ------TMSESIIAKIDEMGSRIDELEQSINDLR-SEMGI 50 (71)
Q Consensus 8 LLqqmQ~kFq------~MS~~I~~riDdMg~RIDdLEksI~dLm-~qaG~ 50 (71)
+..+|...|. ..-+.++.+|-++-.||...|+.|..|. ..+|+
T Consensus 139 ~~~~l~~~~~~ikl~~k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~m 188 (339)
T 1sig_A 139 EILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 188 (339)
T ss_dssp HHHHHHHHHTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344555553 3446677778889999999999999998 44564
No 178
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=23.83 E-value=87 Score=20.34 Aligned_cols=30 Identities=10% Similarity=0.362 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEks 40 (71)
.|.+.++++|..+-..++ ..+..|++||++
T Consensus 4 ~Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LEkt 33 (103)
T 3mq1_A 4 SLMERIHEQIKKGELALF----YLQEQINHFEEK 33 (103)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHcc
Confidence 356777778876544433 467777788875
No 179
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.82 E-value=18 Score=22.46 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 7 NLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
.+|.+|+.||.++.+.++.+- |..-=..||+=+..|-.++
T Consensus 12 qvfheLkQrFPEvPd~VVsqc--~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRC--MLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHH--HTTTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHH--HHHhccCHHHHHHHHHHhc
Confidence 479999999999999999764 3333334444455554444
No 180
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=23.79 E-value=1.4e+02 Score=19.74 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEks 40 (71)
|.+.++.+|..+-..++ ..+..|++||++
T Consensus 20 Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LE~t 48 (119)
T 2jmh_A 20 LIEQANHAIEKGEHQLL----YLQHQLDELNEN 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 45677777766544333 466777788776
No 181
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.78 E-value=1.4e+02 Score=18.50 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDELEQSIND 43 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~d 43 (71)
..++.....-+.+|.|+|++++.-..|--.+..
T Consensus 23 ~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 23 ETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356667888899999999999877665544443
No 182
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=23.78 E-value=1.1e+02 Score=22.06 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH-HHHhhh------HHHHHHHHHHHHHhh
Q 035166 17 QTMSESIIAKI-DEMGSR------IDELEQSINDLRSEM 48 (71)
Q Consensus 17 q~MS~~I~~ri-DdMg~R------IDdLEksI~dLm~qa 48 (71)
.+--..|++|| |||+.| |.++=.+|-.|..-.
T Consensus 100 A~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDAv 138 (213)
T 3ajm_A 100 ARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTV 138 (213)
T ss_dssp HHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888 888887 666666666665443
No 183
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=23.71 E-value=1.1e+02 Score=20.63 Aligned_cols=42 Identities=24% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHhh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAK-----IDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~r-----iDdMg~RIDdLEksI~dLm~qa 48 (71)
+...|.++|...-.+...+.+- |.+ ..|+.||+-|..+..+.
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 96 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKIDE--KYVKWLEERTVEYRKES 96 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCH--HHHHHHHHHHHHHHhhC
Confidence 5667888888876666666542 221 56888999998888776
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=23.53 E-value=2.7e+02 Score=21.87 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+.+..-|..+-.++..||+++ |+.++..++.++.+.
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~---i~~~~~~l~~~~~~~ 653 (695)
T 2j69_A 618 NAVKECFDSYEREVSKRINDD---IVSRKSELDNLVKQK 653 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 555555666666666665444 555555565555543
No 185
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.52 E-value=2.3e+02 Score=21.11 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 035166 8 LLQQMQSRFQTMSESI-----------IAKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 61 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I-----------~~riDdMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 61 (71)
-+++++.+-..+|.+| +.++-+++.+|.+||+.+.++-.+. .+.+.+.+.+|.-
T Consensus 43 ~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 43 RLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 3555666666666543 5666777888888887777765543 4666666766654
No 186
>1onv_B Serine phosphatase FCP1A; transcription factor, human general transcription factor TFIIF, RAP74, RNA polymerase II CTD phosphatase; NMR {Homo sapiens}
Probab=23.51 E-value=37 Score=21.34 Aligned_cols=16 Identities=50% Similarity=0.700 Sum_probs=13.0
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDLR 45 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm 45 (71)
-|+|.. .||..++|||
T Consensus 68 ademaa---aleaelnDfm 83 (83)
T 1onv_B 68 ADEMAK---ALEAELNDLM 83 (83)
T ss_dssp HHHHHH---HHHHHHHHHC
T ss_pred HHHHHH---HHHHHHhccC
Confidence 578876 7899999986
No 187
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=23.39 E-value=1.1e+02 Score=21.06 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=9.2
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 035166 23 IIAKIDEMGSRIDELEQSI 41 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI 41 (71)
|...||..-++||.|.+.+
T Consensus 168 Iv~~Ld~~~~~id~~~~~~ 186 (464)
T 2y7c_A 168 IAEKLDTLLAQVDSTKARF 186 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544443
No 188
>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1
Probab=23.25 E-value=82 Score=21.11 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHh-hccCCC
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELE----QSINDLRSE-MGIEGS 53 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLE----ksI~dLm~q-aG~e~~ 53 (71)
..+|..+-+++...+|+++.||-.|= .++.+...- +.+++.
T Consensus 57 H~~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s~i~e~ 102 (179)
T 1zuj_A 57 RIKFREIALKEDEWFYLISEQLLDENELVPTTLDEFVSNHKFIEND 102 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcCcCCCC
Confidence 56788888999999999999997763 244455554 444443
No 189
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=23.14 E-value=82 Score=21.16 Aligned_cols=25 Identities=0% Similarity=0.008 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
..+|..+-+++...+|+++.||-.|
T Consensus 58 H~~fee~y~~~~~~~D~iAERi~~L 82 (182)
T 1zs3_A 58 CEYLREIAQREVEYFFKISDLLLDE 82 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5668888889999999999998766
No 190
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=23.12 E-value=60 Score=22.53 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHH
Q 035166 3 AFVQNLLQQMQSRFQTMSESIIAKI----DEMGSRIDELEQSINDL 44 (71)
Q Consensus 3 ~~Vq~LLqqmQ~kFq~MS~~I~~ri----DdMg~RIDdLEksI~dL 44 (71)
.+.+.|++-+..||-.+.+...... .+.-.++|.+|+.|-..
T Consensus 136 ~L~~~L~~tf~~R~~~I~d~a~~~~~~~~~~~~~~Ld~~Er~Lf~~ 181 (219)
T 2e9x_C 136 DISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQT 181 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccHHHHHhcCCHHHHHHHHH
Confidence 3567788889999988887776553 34688999999987653
No 191
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=23.11 E-value=1.2e+02 Score=20.59 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHhh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAK-----IDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~r-----iDdMg~RIDdLEksI~dLm~qa 48 (71)
+...|.++|...-.+...+.+- |.+ ..|+.||+-|..+..+.
T Consensus 51 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 51 IRNDLFRIQNDLFVLGEDVSTGGKGRTVTR--EMIDYLEARVKEMKAEI 97 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCH--HHHHHHHHHHHHHHhhC
Confidence 5567888888876666666542 221 66889999999988876
No 192
>1huw_A Human growth hormone; 2.00A {Homo sapiens} SCOP: a.26.1.1 PDB: 1kf9_A 1hwg_A 3hhr_A 1a22_A 1bp3_A 1hwh_A 1axi_A 1hgu_A 1z7c_A
Probab=22.86 E-value=46 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHH-HHhhhHHHHHHHHHHHHHhhcc
Q 035166 25 AKID-EMGSRIDELEQSINDLRSEMGI 50 (71)
Q Consensus 25 ~riD-dMg~RIDdLEksI~dLm~qaG~ 50 (71)
+.=| +|.+++.+||..|..|+.+...
T Consensus 104 ~~~~~~i~~k~k~Leegi~~l~~~~~~ 130 (191)
T 1huw_A 104 GASDSNVYDLLKDLEEGIQTLMGRLED 130 (191)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345 7888889999999999988753
No 193
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=22.72 E-value=1.5e+02 Score=19.18 Aligned_cols=32 Identities=13% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDELEQS 40 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdLEks 40 (71)
|..+.-||..--+.++...+++..+++.|+..
T Consensus 134 l~~L~RKyg~~~eell~~~~~~~~eL~~l~~~ 165 (175)
T 4abx_A 134 LSKLKNKYGPTLEDVVEFGAQAAEELAGLEED 165 (175)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 45555566545566666666666666666543
No 194
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=22.69 E-value=35 Score=22.62 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhH
Q 035166 7 NLLQQMQSRFQTMS----ESIIAKIDEMGSRI 34 (71)
Q Consensus 7 ~LLqqmQ~kFq~MS----~~I~~riDdMg~RI 34 (71)
.+.++++.++..-+ +.+..||+.||-+|
T Consensus 14 elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~I 45 (160)
T 2c0j_B 14 EMVAELWAHDPDPGPGGQKMSLSVLEGMGFRV 45 (160)
T ss_dssp HHHHHTC-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHhHHH
Confidence 45666777776532 34578888888765
No 195
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.52 E-value=2.3e+02 Score=20.76 Aligned_cols=43 Identities=19% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHhh
Q 035166 5 VQNLLQQMQSRFQTMSESIIAK----IDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~r----iDdMg~RIDdLEksI~dLm~qa 48 (71)
+-++|.||.+= ...+..|++- +..++.|+..|...|.-|....
T Consensus 34 L~gilRQL~dL-s~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 34 LANIIRQLSSL-SKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667777653 3344444444 4678999999999999988655
No 196
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=22.42 E-value=1.6e+02 Score=20.82 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 25 AKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 25 ~riDdMg~RIDdLEksI~dLm~qa 48 (71)
..+.++-..+..||++|+..-..|
T Consensus 265 ~~~~~~~~~l~~le~~i~~~~~~~ 288 (292)
T 3aad_A 265 QTLTEYDEHLTQLEKDICTAKEAA 288 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778999999998876665
No 197
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=22.30 E-value=2e+02 Score=19.84 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 12 MQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 12 mQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
-|.+|...-+.|..+|+..-..|+.|++--..||.++
T Consensus 356 eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 356 LQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667766666777777777888888888777788776
No 198
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=21.83 E-value=1.9e+02 Score=19.49 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 13 QSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 13 Q~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
|.|+-..-+.|-..|+.--..|+.|++--..|+.++
T Consensus 171 Q~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~ 206 (425)
T 1yf2_A 171 QKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKL 206 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665556666666666777777777666666554
No 199
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=21.80 E-value=1.3e+02 Score=19.23 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
|...+...-+-|.+.......++-++-..||+|++.+..-
T Consensus 126 v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~ 165 (217)
T 1xwm_A 126 ATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMAS 165 (217)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443344455666666788887766543
No 200
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=21.79 E-value=34 Score=23.13 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=5.6
Q ss_pred HHHHhhhHHHHHH
Q 035166 27 IDEMGSRIDELEQ 39 (71)
Q Consensus 27 iDdMg~RIDdLEk 39 (71)
++++...+++|.+
T Consensus 68 ~~~l~~~~~~l~~ 80 (191)
T 1nfn_A 68 MKELKAYKSELEE 80 (191)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 201
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.78 E-value=95 Score=22.42 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=7.5
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 035166 27 IDEMGSRIDELEQSINDL 44 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dL 44 (71)
++.+...+..|++.|.+|
T Consensus 187 ie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 202
>2ld3_A Myosin VI; molecular motor, lever arm extension, motor prote; NMR {Mus musculus}
Probab=27.30 E-value=19 Score=22.20 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 14 SRFQTMSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 14 ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
++|..+-.++=.-=|+|+..|.+|++.|..++..-
T Consensus 17 ~~m~eia~~LK~~k~~~~kqV~~l~~~Ie~~I~kI 51 (88)
T 2ld3_A 17 DKFNEVVSALKDGKPEVNRQIKNLEISIDALMAKI 51 (88)
Confidence 44444443333333678888888888888877654
No 203
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.71 E-value=2.8e+02 Score=21.45 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhh-----ccCCCCCCCCCCC
Q 035166 23 IIAKIDEMGSRIDELEQSINDLRSEM-----GIEGSASPSLPSK 61 (71)
Q Consensus 23 I~~riDdMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 61 (71)
++.++-+++.+|.+||+.+.++-.+. .+-+.+.+.+|.-
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34445566777777777766665554 5667777776654
No 204
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=21.70 E-value=59 Score=19.87 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 11 QMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 11 qmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
.+...|...+..-..-.|.+..||..|
T Consensus 39 ~l~~~f~~~a~ee~~Had~l~eri~~l 65 (161)
T 3gvy_A 39 SIAHKSRKESIEEMHHADKLIQRIIFL 65 (161)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456667777777777777777777544
No 205
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=21.59 E-value=69 Score=17.54 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhHHH
Q 035166 22 SIIAKIDEMGSRIDE 36 (71)
Q Consensus 22 ~I~~riDdMg~RIDd 36 (71)
.++.+|+-+|.||.|
T Consensus 3 ~~FK~iE~vGq~iRd 17 (38)
T 2la2_A 3 KIFKKIEKVGRNVRD 17 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 357788888888754
No 206
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.55 E-value=1e+02 Score=16.22 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=7.8
Q ss_pred HhhhHHHHHHHHH
Q 035166 30 MGSRIDELEQSIN 42 (71)
Q Consensus 30 Mg~RIDdLEksI~ 42 (71)
+-.|+|.||..++
T Consensus 18 lq~r~drle~tvq 30 (32)
T 2akf_A 18 LQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4456677776553
No 207
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=21.53 E-value=1.6e+02 Score=18.64 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 035166 5 VQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDL 44 (71)
Q Consensus 5 Vq~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dL 44 (71)
|...+...-+-|.+.......++-++-..||+|++.+..-
T Consensus 126 v~~~l~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~~~~~ 165 (216)
T 2i0m_A 126 SLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKE 165 (216)
T ss_dssp HHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445556666777888888877544
No 208
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}
Probab=21.40 E-value=1.5e+02 Score=18.00 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
+..+...|...+++-..-.|.+..||..|
T Consensus 48 ~~~l~~~f~~~a~ee~~Had~lae~i~~l 76 (170)
T 2vzb_A 48 RADVQGEFEEHAEEERHHAQLIADRIIEL 76 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556667777777777777777777554
No 209
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.40 E-value=1.4e+02 Score=17.92 Aligned_cols=45 Identities=31% Similarity=0.372 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHH---HHHHHhhccCC
Q 035166 8 LLQQMQSRFQTMSESIIAKIDEMG--------SRIDELEQSI---NDLRSEMGIEG 52 (71)
Q Consensus 8 LLqqmQ~kFq~MS~~I~~riDdMg--------~RIDdLEksI---~dLm~qaG~e~ 52 (71)
||.....-|+....+|..+|+... .-|.+.|..+ .+|+.|+.+|.
T Consensus 2 lF~~YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~ 57 (97)
T 3onj_A 2 LLISYESDFKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEV 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677778888888888887765 2345555554 35666766653
No 210
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=21.09 E-value=75 Score=17.34 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 035166 8 LLQQMQSRFQTM 19 (71)
Q Consensus 8 LLqqmQ~kFq~M 19 (71)
-+..||.||+.+
T Consensus 27 di~~MqsRLaAL 38 (40)
T 2xze_Q 27 ALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 466788887764
No 211
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=21.05 E-value=40 Score=24.23 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=18.0
Q ss_pred HHHHHHHH-----HhhhHHHHHHHHHHHH
Q 035166 22 SIIAKIDE-----MGSRIDELEQSINDLR 45 (71)
Q Consensus 22 ~I~~riDd-----Mg~RIDdLEksI~dLm 45 (71)
..+.|+.+ |..|+..|||.+.+|.
T Consensus 323 ~~~~~l~~~r~~~l~~~~~~l~~~~~~l~ 351 (357)
T 4e79_A 323 VRLRQLADVPLTQITKRLDHIQAQIESLE 351 (357)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHCC-
T ss_pred HHHhhcchhhhHHHHHHHHHHHHHHHhhh
Confidence 34667777 9999999999887653
No 212
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.90 E-value=1.5e+02 Score=18.31 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 21 ESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 21 ~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
++|-.||...-..++.|++.|..+..+.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777778888888888888887654
No 213
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=20.90 E-value=2e+02 Score=19.31 Aligned_cols=29 Identities=0% Similarity=0.289 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----HHHHhhcc
Q 035166 22 SIIAKIDEMGSRIDELEQSIN----DLRSEMGI 50 (71)
Q Consensus 22 ~I~~riDdMg~RIDdLEksI~----dLm~qaG~ 50 (71)
.+-.||+.+..||+++++... --+.-+++
T Consensus 69 n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~L 101 (162)
T 3emo_C 69 NLAGQVNNLEGKVNKVGKRADAGTASALAASQL 101 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccC
Confidence 355688888889999888763 44445555
No 214
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=20.86 E-value=1e+02 Score=17.85 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=13.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 035166 27 IDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~q 47 (71)
|++.=.+||.+-..|-+|+++
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~ 25 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSE 25 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666654
No 215
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=20.74 E-value=29 Score=17.37 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 035166 19 MSESIIAKIDEMGSRIDELEQSINDLRSEM 48 (71)
Q Consensus 19 MS~~I~~riDdMg~RIDdLEksI~dLm~qa 48 (71)
+++.++.++|+++.+.. .|-++++.+|
T Consensus 9 l~~~l~~~Ld~~a~~~g---~srS~~ir~a 35 (45)
T 2cpg_A 9 LSESVLENLEKMAREMG---LSKSAMISVA 35 (45)
T ss_dssp EEHHHHHHHHHHHHHHT---CCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 45667777777776543 2555555443
No 216
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}
Probab=20.55 E-value=1e+02 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 035166 9 LQQMQSRFQTMSESIIAKIDEMGSRIDEL 37 (71)
Q Consensus 9 LqqmQ~kFq~MS~~I~~riDdMg~RIDdL 37 (71)
+..+...|...+.+-..-.|.+..||..|
T Consensus 58 ~~~l~~~f~~~a~eE~~Had~laeri~~l 86 (182)
T 3fvb_A 58 YTRLAKKEREESIEEMHHADKLIDRIIFL 86 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44566777777777777777777777554
No 217
>3lyn_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.70A {Haliotis fulgens} SCOP: a.19.1.1
Probab=20.15 E-value=73 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 035166 10 QQMQSRFQTMSESIIAKIDEMGS 32 (71)
Q Consensus 10 qqmQ~kFq~MS~~I~~riDdMg~ 32 (71)
+-||+..++.|..|..+|+.+|+
T Consensus 56 rymqt~W~nym~W~~k~i~kLgR 78 (136)
T 3lyn_A 56 RYMQTHWQNYMLWVKRKIKALGR 78 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhHHHHHHHHHHHHHHhCC
Confidence 56899999999999999987654
No 218
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=20.12 E-value=92 Score=21.77 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=17.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhc
Q 035166 27 IDEMGSRIDELEQSINDLRSEMG 49 (71)
Q Consensus 27 iDdMg~RIDdLEksI~dLm~qaG 49 (71)
++-+=.||+.||..|.+||..|.
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~~A~ 96 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMDVAR 96 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566688888888888887663
No 219
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.02 E-value=1.5e+02 Score=17.59 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 035166 6 QNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSINDLRSE 47 (71)
Q Consensus 6 q~LLqqmQ~kFq~MS~~I~~riDdMg~RIDdLEksI~dLm~q 47 (71)
++-|..+..+|.. .+.++...|..||..+..+...
T Consensus 16 e~~l~e~E~~~~~-------~l~~~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 16 EAKLRDLEDSLAR-------ERDTSRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555543 4566666677777776666543
Done!