Query 035170
Match_columns 71
No_of_seqs 177 out of 1279
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 09:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1062 AdhC Zn-dependent alco 99.7 4.6E-17 9.9E-22 98.2 5.0 68 2-69 299-366 (366)
2 KOG0024 Sorbitol dehydrogenase 99.5 8.7E-14 1.9E-18 83.8 6.0 65 3-70 287-353 (354)
3 KOG0022 Alcohol dehydrogenase, 99.5 8.7E-14 1.9E-18 83.7 5.2 69 1-69 307-375 (375)
4 PLN02827 Alcohol dehydrogenase 99.3 4.3E-12 9.3E-17 77.8 6.3 69 3-71 310-378 (378)
5 PLN02740 Alcohol dehydrogenase 99.3 1.9E-11 4.1E-16 75.0 5.9 66 4-69 316-381 (381)
6 cd08238 sorbose_phosphate_red 99.3 1.6E-11 3.4E-16 76.0 5.5 65 3-70 305-369 (410)
7 cd08281 liver_ADH_like1 Zinc-d 99.2 3.6E-11 7.7E-16 73.4 5.6 65 3-67 306-370 (371)
8 cd08301 alcohol_DH_plants Plan 99.2 3.4E-11 7.5E-16 73.4 5.5 66 3-68 304-369 (369)
9 PRK10309 galactitol-1-phosphat 99.2 7.4E-11 1.6E-15 71.3 6.3 67 3-69 277-346 (347)
10 TIGR03451 mycoS_dep_FDH mycoth 99.2 6.4E-11 1.4E-15 72.0 5.8 66 3-68 292-357 (358)
11 PRK09880 L-idonate 5-dehydroge 99.2 1.4E-10 3E-15 70.2 6.7 63 3-69 280-343 (343)
12 cd08239 THR_DH_like L-threonin 99.2 9.4E-11 2E-15 70.6 6.0 64 3-69 276-339 (339)
13 COG1064 AdhP Zn-dependent alco 99.2 8.5E-11 1.8E-15 71.6 5.6 65 2-71 274-339 (339)
14 TIGR01202 bchC 2-desacetyl-2-h 99.2 1E-10 2.2E-15 70.0 5.6 63 3-68 245-308 (308)
15 COG1063 Tdh Threonine dehydrog 99.2 1.3E-10 2.9E-15 71.0 6.1 65 3-69 284-350 (350)
16 TIGR02818 adh_III_F_hyde S-(hy 99.2 1.3E-10 2.9E-15 71.0 6.0 64 6-69 305-368 (368)
17 cd08277 liver_alcohol_DH_like 99.1 1.3E-10 2.7E-15 70.9 5.2 64 5-68 302-365 (365)
18 cd08300 alcohol_DH_class_III c 99.1 2.1E-10 4.6E-15 70.0 5.6 63 6-68 306-368 (368)
19 TIGR02819 fdhA_non_GSH formald 99.0 6.7E-10 1.5E-14 68.7 5.6 63 5-70 328-391 (393)
20 TIGR03201 dearomat_had 6-hydro 98.9 3.6E-09 7.8E-14 64.2 6.0 62 4-69 287-349 (349)
21 cd08237 ribitol-5-phosphate_DH 98.9 3.7E-09 8.1E-14 64.1 4.4 65 3-70 270-340 (341)
22 PLN02178 cinnamyl-alcohol dehy 98.9 6.6E-09 1.4E-13 64.0 5.5 61 3-69 287-348 (375)
23 cd08230 glucose_DH Glucose deh 98.9 6.6E-09 1.4E-13 63.1 5.2 63 3-69 289-355 (355)
24 TIGR02822 adh_fam_2 zinc-bindi 98.8 1.2E-08 2.6E-13 61.7 5.3 59 3-67 269-328 (329)
25 PF13602 ADH_zinc_N_2: Zinc-bi 98.8 2.1E-08 4.6E-13 53.0 5.7 45 21-67 82-127 (127)
26 PLN02514 cinnamyl-alcohol dehy 98.8 1.5E-08 3.3E-13 61.8 5.6 62 3-70 289-351 (357)
27 PLN02586 probable cinnamyl alc 98.8 1.8E-08 4E-13 61.6 5.1 61 3-69 292-353 (360)
28 cd08233 butanediol_DH_like (2R 98.8 3.6E-08 7.9E-13 59.7 6.1 63 3-68 286-351 (351)
29 cd08231 MDR_TM0436_like Hypoth 98.8 3.2E-08 6.9E-13 60.2 5.8 64 3-69 296-361 (361)
30 PLN03154 putative allyl alcoho 98.7 2E-08 4.4E-13 61.2 4.4 66 3-70 278-346 (348)
31 KOG0023 Alcohol dehydrogenase, 98.6 2.1E-07 4.6E-12 56.7 6.2 63 2-70 292-355 (360)
32 cd08242 MDR_like Medium chain 98.6 3.6E-07 7.9E-12 54.6 6.6 61 3-69 259-319 (319)
33 cd08299 alcohol_DH_class_I_II_ 98.5 4.2E-07 9.2E-12 55.8 6.0 66 4-69 308-373 (373)
34 cd08291 ETR_like_1 2-enoyl thi 98.5 3.9E-07 8.5E-12 54.7 5.0 63 3-68 258-324 (324)
35 cd05279 Zn_ADH1 Liver alcohol 98.4 1.1E-06 2.3E-11 53.8 5.5 64 4-67 301-364 (365)
36 PRK10083 putative oxidoreducta 98.4 1.8E-06 4E-11 52.0 6.4 63 5-71 275-339 (339)
37 cd08285 NADP_ADH NADP(H)-depen 98.3 3.2E-06 6.9E-11 51.3 6.6 63 5-69 286-351 (351)
38 cd08287 FDH_like_ADH3 formalde 98.3 1.8E-06 3.9E-11 52.1 5.4 64 3-69 282-345 (345)
39 cd08262 Zn_ADH8 Alcohol dehydr 98.3 4.1E-06 8.8E-11 50.5 5.9 62 4-68 279-341 (341)
40 cd08286 FDH_like_ADH2 formalde 98.2 7.3E-06 1.6E-10 49.5 6.0 63 3-69 280-345 (345)
41 cd08282 PFDH_like Pseudomonas 98.2 7.2E-06 1.6E-10 50.4 5.7 62 5-69 314-375 (375)
42 cd08283 FDH_like_1 Glutathione 98.2 8.2E-06 1.8E-10 50.4 5.7 63 4-69 322-386 (386)
43 cd08278 benzyl_alcohol_DH Benz 98.1 1E-05 2.3E-10 49.5 5.6 64 4-68 302-365 (365)
44 TIGR03366 HpnZ_proposed putati 98.1 9.1E-07 2E-11 52.4 0.9 45 3-50 234-280 (280)
45 cd08265 Zn_ADH3 Alcohol dehydr 98.1 1.7E-05 3.7E-10 49.0 6.2 62 4-67 322-383 (384)
46 PRK05396 tdh L-threonine 3-deh 98.1 2.9E-05 6.3E-10 46.9 6.7 65 3-70 277-341 (341)
47 cd05283 CAD1 Cinnamyl alcohol 98.0 1.3E-05 2.9E-10 48.4 5.0 60 3-68 277-337 (337)
48 cd08232 idonate-5-DH L-idonate 98.0 2.9E-05 6.2E-10 46.8 6.3 62 4-69 277-339 (339)
49 cd08256 Zn_ADH2 Alcohol dehydr 98.0 2.3E-05 4.9E-10 47.6 5.8 60 4-67 290-350 (350)
50 TIGR00692 tdh L-threonine 3-de 98.0 3.4E-05 7.5E-10 46.6 6.3 64 4-69 277-340 (340)
51 cd08279 Zn_ADH_class_III Class 98.0 3.4E-05 7.4E-10 47.2 6.3 63 5-67 300-362 (363)
52 cd08295 double_bond_reductase_ 98.0 1.2E-05 2.6E-10 48.6 4.3 64 4-69 272-338 (338)
53 PLN02702 L-idonate 5-dehydroge 98.0 3.1E-05 6.8E-10 47.3 5.8 61 4-68 300-363 (364)
54 cd05281 TDH Threonine dehydrog 98.0 4.5E-05 9.7E-10 46.2 6.4 64 4-69 278-341 (341)
55 cd08263 Zn_ADH10 Alcohol dehyd 97.9 2.7E-05 5.8E-10 47.7 5.1 63 4-68 304-367 (367)
56 cd00401 AdoHcyase S-adenosyl-L 97.9 8.1E-06 1.8E-10 51.4 2.8 65 4-70 302-377 (413)
57 cd08284 FDH_like_2 Glutathione 97.9 4.2E-05 9E-10 46.2 5.7 63 4-69 282-344 (344)
58 PRK13771 putative alcohol dehy 97.9 4.9E-05 1.1E-09 45.7 5.6 61 4-69 272-333 (334)
59 cd08274 MDR9 Medium chain dehy 97.9 3.8E-05 8.3E-10 46.4 5.1 62 3-69 288-350 (350)
60 TIGR02825 B4_12hDH leukotriene 97.9 2.8E-05 6.1E-10 46.8 4.3 63 4-68 259-325 (325)
61 cd08296 CAD_like Cinnamyl alco 97.8 6E-05 1.3E-09 45.5 5.1 59 4-68 274-333 (333)
62 cd08246 crotonyl_coA_red croto 97.8 6.6E-05 1.4E-09 46.4 5.4 60 4-68 331-392 (393)
63 cd08260 Zn_ADH6 Alcohol dehydr 97.8 7.1E-05 1.5E-09 45.3 5.3 62 4-68 282-344 (345)
64 cd08235 iditol_2_DH_like L-idi 97.7 0.00018 3.8E-09 43.4 6.2 61 4-67 282-342 (343)
65 cd08294 leukotriene_B4_DH_like 97.7 5.3E-05 1.2E-09 45.3 3.9 64 4-69 263-329 (329)
66 cd05285 sorbitol_DH Sorbitol d 97.7 0.00021 4.5E-09 43.3 6.1 60 4-67 280-341 (343)
67 TIGR01751 crot-CoA-red crotony 97.7 0.00016 3.4E-09 44.9 5.3 61 4-69 326-387 (398)
68 PRK10754 quinone oxidoreductas 97.7 0.00013 2.8E-09 43.7 4.7 46 24-69 281-327 (327)
69 cd05284 arabinose_DH_like D-ar 97.7 0.00022 4.9E-09 42.9 5.7 61 3-69 279-340 (340)
70 cd08269 Zn_ADH9 Alcohol dehydr 97.6 0.00029 6.3E-09 41.8 5.9 64 4-67 245-311 (312)
71 cd08266 Zn_ADH_like1 Alcohol d 97.6 0.00023 4.9E-09 42.4 5.4 62 3-69 280-342 (342)
72 cd08254 hydroxyacyl_CoA_DH 6-h 97.6 0.00028 6E-09 42.3 5.5 60 4-69 278-338 (338)
73 COG0604 Qor NADPH:quinone redu 97.6 0.00021 4.6E-09 43.7 4.9 64 4-69 258-326 (326)
74 cd08270 MDR4 Medium chain dehy 97.6 0.00023 5E-09 42.1 4.9 63 5-69 241-305 (305)
75 cd05278 FDH_like Formaldehyde 97.5 0.00048 1E-08 41.6 6.0 63 4-69 283-347 (347)
76 cd08292 ETR_like_2 2-enoyl thi 97.5 0.0004 8.6E-09 41.5 5.1 64 3-68 253-324 (324)
77 cd08259 Zn_ADH5 Alcohol dehydr 97.5 0.00048 1E-08 41.2 5.4 59 5-68 273-332 (332)
78 cd08240 6_hydroxyhexanoate_dh_ 97.5 0.0005 1.1E-08 41.7 5.4 61 4-69 289-350 (350)
79 cd08244 MDR_enoyl_red Possible 97.4 0.00054 1.2E-08 40.8 5.2 64 4-69 257-324 (324)
80 PRK09422 ethanol-active dehydr 97.4 0.00058 1.2E-08 41.1 5.1 59 5-69 277-336 (338)
81 cd08234 threonine_DH_like L-th 97.4 0.00079 1.7E-08 40.4 5.6 59 5-67 275-333 (334)
82 cd08261 Zn_ADH7 Alcohol dehydr 97.4 0.0011 2.4E-08 40.0 6.2 62 5-69 274-337 (337)
83 cd08293 PTGR2 Prostaglandin re 97.4 0.00067 1.5E-08 41.0 5.2 46 22-69 299-345 (345)
84 cd08276 MDR7 Medium chain dehy 97.4 0.00087 1.9E-08 40.0 5.6 61 3-68 274-335 (336)
85 cd08298 CAD2 Cinnamyl alcohol 97.3 0.00071 1.5E-08 40.6 5.0 58 4-67 271-329 (329)
86 KOG1197 Predicted quinone oxid 97.3 0.00056 1.2E-08 41.3 4.4 47 22-70 284-331 (336)
87 cd08236 sugar_DH NAD(P)-depend 97.3 0.0012 2.6E-08 39.9 5.9 64 4-67 276-343 (343)
88 cd08297 CAD3 Cinnamyl alcohol 97.1 0.002 4.2E-08 39.0 5.4 60 4-69 281-341 (341)
89 cd08250 Mgc45594_like Mgc45594 97.1 0.0007 1.5E-08 40.6 3.3 65 4-68 262-329 (329)
90 cd05280 MDR_yhdh_yhfp Yhdh and 97.1 0.0026 5.6E-08 37.9 5.7 61 4-68 259-324 (325)
91 KOG1198 Zinc-binding oxidoredu 97.1 0.0018 4E-08 40.1 5.0 48 21-70 298-346 (347)
92 cd05282 ETR_like 2-enoyl thioe 97.0 0.0022 4.7E-08 38.2 4.8 62 5-68 254-323 (323)
93 PTZ00354 alcohol dehydrogenase 97.0 0.0031 6.7E-08 37.7 5.3 64 5-70 258-329 (334)
94 cd08245 CAD Cinnamyl alcohol d 97.0 0.002 4.3E-08 38.7 4.3 58 4-67 272-330 (330)
95 cd08243 quinone_oxidoreductase 96.9 0.0022 4.9E-08 38.0 4.3 61 4-67 258-319 (320)
96 cd08255 2-desacetyl-2-hydroxye 96.9 0.0022 4.7E-08 37.7 4.1 45 21-67 231-277 (277)
97 cd05288 PGDH Prostaglandin deh 96.7 0.002 4.4E-08 38.6 3.0 63 3-67 264-329 (329)
98 KOG0025 Zn2+-binding dehydroge 96.7 0.0069 1.5E-07 37.2 5.2 67 2-70 277-353 (354)
99 cd08290 ETR 2-enoyl thioester 96.6 0.0061 1.3E-07 36.8 4.7 64 3-68 266-340 (341)
100 cd08247 AST1_like AST1 is a cy 96.6 0.0055 1.2E-07 37.3 4.5 45 22-68 306-351 (352)
101 cd05286 QOR2 Quinone oxidoredu 96.6 0.0091 2E-07 35.1 5.0 45 23-69 275-320 (320)
102 cd08273 MDR8 Medium chain dehy 96.4 0.011 2.4E-07 35.4 4.8 45 21-67 285-330 (331)
103 cd08288 MDR_yhdh Yhdh putative 96.4 0.022 4.8E-07 34.1 6.0 62 4-68 258-323 (324)
104 cd08241 QOR1 Quinone oxidoredu 96.4 0.014 3.1E-07 34.4 5.1 62 4-67 254-322 (323)
105 cd08248 RTN4I1 Human Reticulon 96.3 0.01 2.2E-07 35.9 4.5 45 21-67 304-349 (350)
106 cd08275 MDR3 Medium chain dehy 96.3 0.017 3.6E-07 34.5 5.3 64 4-69 268-337 (337)
107 cd08289 MDR_yhfp_like Yhfp put 96.3 0.025 5.4E-07 33.9 6.0 64 4-69 259-326 (326)
108 cd08264 Zn_ADH_like2 Alcohol d 96.2 0.0097 2.1E-07 35.7 3.9 55 4-65 269-324 (325)
109 cd05289 MDR_like_2 alcohol deh 96.2 0.01 2.2E-07 34.9 3.9 44 21-66 264-308 (309)
110 cd05276 p53_inducible_oxidored 96.2 0.026 5.6E-07 33.2 5.5 62 4-67 254-323 (323)
111 cd08272 MDR6 Medium chain dehy 96.1 0.02 4.3E-07 33.9 4.9 46 22-69 279-326 (326)
112 cd08249 enoyl_reductase_like e 96.1 0.019 4.2E-07 34.9 4.9 45 22-68 290-338 (339)
113 COG2130 Putative NADP-dependen 96.0 0.01 2.3E-07 36.6 3.1 66 3-70 270-339 (340)
114 KOG1202 Animal-type fatty acid 95.9 0.013 2.9E-07 42.2 3.8 67 3-69 1670-1741(2376)
115 cd08267 MDR1 Medium chain dehy 95.9 0.021 4.5E-07 33.8 4.2 44 21-66 274-318 (319)
116 TIGR02823 oxido_YhdH putative 95.8 0.075 1.6E-06 31.8 6.5 61 4-68 257-322 (323)
117 cd08252 AL_MDR Arginate lyase 95.8 0.056 1.2E-06 32.5 5.9 64 4-67 261-335 (336)
118 cd08251 polyketide_synthase po 95.7 0.03 6.4E-07 32.8 4.4 44 22-67 259-303 (303)
119 cd08271 MDR5 Medium chain dehy 95.6 0.04 8.6E-07 32.7 4.8 45 23-69 280-325 (325)
120 cd08253 zeta_crystallin Zeta-c 95.4 0.057 1.2E-06 31.8 4.9 64 4-69 258-325 (325)
121 smart00829 PKS_ER Enoylreducta 95.4 0.047 1E-06 31.6 4.4 43 22-66 244-287 (288)
122 cd05195 enoyl_red enoyl reduct 95.1 0.055 1.2E-06 31.3 4.0 44 22-67 249-293 (293)
123 TIGR02817 adh_fam_1 zinc-bindi 95.0 0.067 1.5E-06 32.2 4.3 45 22-68 286-334 (336)
124 TIGR02824 quinone_pig3 putativ 94.9 0.099 2.1E-06 30.9 4.8 63 4-68 254-324 (325)
125 cd08268 MDR2 Medium chain dehy 94.4 0.16 3.5E-06 30.0 4.9 64 3-69 258-328 (328)
126 KOG1196 Predicted NAD-dependen 91.4 0.4 8.6E-06 29.9 3.5 64 3-70 273-341 (343)
127 PF00107 ADH_zinc_N: Zinc-bind 90.7 0.15 3.1E-06 26.7 1.1 26 3-31 104-129 (130)
128 cd08258 Zn_ADH4 Alcohol dehydr 90.7 0.27 5.8E-06 29.6 2.4 27 4-33 280-306 (306)
129 PF07109 Mg-por_mtran_C: Magne 85.3 1.3 2.9E-05 22.9 2.6 26 44-69 7-32 (97)
130 PF14237 DUF4339: Domain of un 79.7 3.4 7.3E-05 17.9 2.5 21 21-41 14-34 (45)
131 PRK09424 pntA NAD(P) transhydr 61.3 8.1 0.00018 25.7 2.1 34 5-42 305-339 (509)
132 PF11084 DUF2621: Protein of u 58.5 4 8.6E-05 22.4 0.3 34 5-40 104-137 (141)
133 PF11123 DNA_Packaging_2: DNA 57.2 10 0.00022 18.9 1.6 39 21-59 32-70 (82)
134 PF10006 DUF2249: Uncharacteri 54.1 15 0.00032 17.3 1.9 17 45-61 11-27 (69)
135 PF12324 HTH_15: Helix-turn-he 46.6 19 0.00041 17.9 1.6 38 22-59 25-64 (77)
136 PRK11873 arsM arsenite S-adeno 42.1 66 0.0014 19.1 3.8 37 21-57 209-246 (272)
137 PF06903 VirK: VirK protein; 41.1 36 0.00078 17.8 2.2 28 21-53 4-31 (100)
138 COG4566 TtrR Response regulato 41.1 39 0.00084 20.0 2.5 34 20-56 85-118 (202)
139 PF05023 Phytochelatin: Phytoc 40.6 78 0.0017 18.7 3.9 49 21-69 97-145 (212)
140 PF03509 Connexin50: Gap junct 31.8 19 0.00041 17.2 0.3 12 40-51 15-26 (66)
141 COG2921 Uncharacterized conser 31.5 81 0.0018 16.2 2.6 24 44-67 67-90 (90)
142 PRK11589 gcvR glycine cleavage 30.2 1.2E+02 0.0025 17.6 4.6 48 21-68 107-176 (190)
143 cd00291 SirA_YedF_YeeD SirA, Y 29.9 55 0.0012 15.0 1.8 6 26-31 16-21 (69)
144 COG0425 SirA Predicted redox p 29.6 68 0.0015 15.7 2.1 28 5-34 6-33 (78)
145 KOG0558 Dihydrolipoamide trans 29.3 15 0.00034 23.7 -0.3 32 21-52 364-395 (474)
146 cd05188 MDR Medium chain reduc 28.2 42 0.00091 19.2 1.4 10 46-55 260-269 (271)
147 PF14493 HTH_40: Helix-turn-he 27.7 64 0.0014 16.0 1.9 33 23-56 31-64 (91)
148 cd04924 ACT_AK-Arch_2 ACT doma 27.3 70 0.0015 14.1 4.7 37 21-57 16-60 (66)
149 cd00914 PCD_DCoH_subfamily_b P 27.2 80 0.0017 15.2 2.1 18 41-58 11-28 (76)
150 cd00488 PCD_DCoH PCD_DCoH: The 27.0 84 0.0018 15.0 2.1 19 40-58 9-27 (75)
151 PF02142 MGS: MGS-like domain 26.4 95 0.0021 15.4 2.8 29 25-55 51-81 (95)
152 COG1393 ArsC Arsenate reductas 25.6 1.2E+02 0.0025 16.1 3.4 47 6-57 2-50 (117)
153 CHL00076 chlB photochlorophyll 25.1 1.3E+02 0.0028 20.2 3.3 47 6-52 165-211 (513)
154 PF03808 Glyco_tran_WecB: Glyc 25.1 1.2E+02 0.0027 16.9 2.9 31 6-37 74-104 (172)
155 PRK00299 sulfur transfer prote 23.7 71 0.0015 15.6 1.6 9 25-33 28-36 (81)
156 COG3719 Rna Ribonuclease I [Tr 23.0 56 0.0012 19.9 1.3 54 6-60 139-195 (249)
157 PF08210 APOBEC_N: APOBEC-like 22.8 1.2E+02 0.0026 17.5 2.6 40 22-61 92-139 (188)
158 PHA02844 putative transmembran 22.3 30 0.00065 17.1 0.0 22 9-32 8-29 (75)
159 PHA02819 hypothetical protein; 22.2 26 0.00057 17.1 -0.2 22 9-32 8-29 (71)
160 PF08902 DUF1848: Domain of un 22.2 2.1E+02 0.0045 17.7 3.7 30 40-69 122-154 (266)
161 PRK10095 ribonuclease I; Provi 22.2 96 0.0021 19.1 2.2 49 10-59 156-209 (268)
162 PF13065 DUF3928: Protein of u 22.2 1.2E+02 0.0026 15.1 3.3 33 21-58 59-91 (95)
163 PRK14461 ribosomal RNA large s 22.2 1E+02 0.0022 20.0 2.3 26 42-67 249-274 (371)
164 PHA02650 hypothetical protein; 21.9 30 0.00066 17.3 0.0 22 9-32 8-29 (81)
165 COG2840 Uncharacterized protei 21.9 1.8E+02 0.0039 17.0 3.3 35 24-58 82-117 (184)
166 PF09377 SBDS_C: SBDS protein 21.9 58 0.0013 17.4 1.1 12 48-59 47-58 (125)
167 cd06811 PLPDE_III_yhfX_like Ty 21.8 2.3E+02 0.005 18.1 4.0 36 21-59 12-47 (382)
168 PF03102 NeuB: NeuB family; I 21.7 1.7E+02 0.0037 17.6 3.1 36 22-59 101-137 (241)
169 COG0074 SucD Succinyl-CoA synt 21.7 2.2E+02 0.0048 17.9 4.0 38 21-59 77-114 (293)
170 PF06953 ArsD: Arsenical resis 21.5 1.2E+02 0.0025 16.4 2.2 28 23-55 29-56 (123)
171 cd04916 ACT_AKiii-YclM-BS_2 AC 21.4 97 0.0021 13.6 4.5 49 7-57 4-60 (66)
172 cd01967 Nitrogenase_MoFe_alpha 20.7 1.4E+02 0.003 19.0 2.7 44 5-52 161-204 (406)
173 PF01329 Pterin_4a: Pterin 4 a 20.7 1.3E+02 0.0027 15.2 2.2 36 23-58 10-45 (95)
174 cd07014 S49_SppA Signal peptid 20.6 1.4E+02 0.003 16.6 2.5 23 44-66 21-43 (177)
175 PHA02975 hypothetical protein; 20.5 33 0.00073 16.6 -0.0 22 9-32 8-29 (69)
176 TIGR02014 BchZ chlorophyllide 20.4 1.3E+02 0.0028 20.1 2.6 47 6-52 154-200 (468)
177 cd01981 Pchlide_reductase_B Pc 20.3 1.8E+02 0.004 18.7 3.2 48 6-53 164-211 (430)
178 PF00497 SBP_bac_3: Bacterial 20.3 1.4E+02 0.003 16.3 2.5 17 21-37 139-155 (225)
179 cd01977 Nitrogenase_VFe_alpha 20.2 1.5E+02 0.0033 19.1 2.8 44 5-52 163-206 (415)
180 PF04400 DUF539: Protein of un 20.2 39 0.00084 15.0 0.2 13 3-15 2-14 (45)
No 1
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.69 E-value=4.6e-17 Score=98.23 Aligned_cols=68 Identities=41% Similarity=0.871 Sum_probs=63.2
Q ss_pred CcccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 2 NLLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 2 ~~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
.|..+.+|+||++|+..|+.+++++++++.+|+++++++|||+++|+|+++||+.+.+|+.+|.||.+
T Consensus 299 ~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~ 366 (366)
T COG1062 299 QLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366 (366)
T ss_pred HeeccceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence 35567899999999888889999999999999999999999999999999999999999999998864
No 2
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=8.7e-14 Score=83.79 Aligned_cols=65 Identities=34% Similarity=0.592 Sum_probs=57.8
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc--eeeEEEeec
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE--GLRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~--~~kvvi~~~ 70 (71)
..||++++|++ .|. ..+|+.+++++++|+++++++|||+|+++++.+||+...+++ .+|+++...
T Consensus 287 ~~kE~~~~g~f--ry~-~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~ 353 (354)
T KOG0024|consen 287 ALKEVDLRGSF--RYC-NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGP 353 (354)
T ss_pred hhheeeeeeee--eec-cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCC
Confidence 46899999999 554 259999999999999999999999999999999999988866 589999764
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=8.7e-14 Score=83.72 Aligned_cols=69 Identities=46% Similarity=0.965 Sum_probs=64.1
Q ss_pred CCcccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 1 MNLLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 1 ~~~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+.|.++.++.|+.+|++.+++++|.+++.+.++.++++.+|||++||+++++||+.+.+|+.+|.++.+
T Consensus 307 ~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR~vl~~ 375 (375)
T KOG0022|consen 307 FQLVTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIRCVLWM 375 (375)
T ss_pred hhhccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence 357789999999999988889999999999999999999999999999999999999999999998753
No 4
>PLN02827 Alcohol dehydrogenase-like
Probab=99.33 E-value=4.3e-12 Score=77.84 Aligned_cols=69 Identities=58% Similarity=1.062 Sum_probs=59.1
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEeecC
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRMEE 71 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~~~ 71 (71)
+.++++++|++.+.+....++.++++++.+|+++++++|+++|||+|+++||+.+.+++.+|+||.+.+
T Consensus 310 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~~ 378 (378)
T PLN02827 310 FLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMPK 378 (378)
T ss_pred HhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEecC
Confidence 458999999986544333578999999999999988899999999999999999998887899998753
No 5
>PLN02740 Alcohol dehydrogenase-like
Probab=99.25 E-value=1.9e-11 Score=74.97 Aligned_cols=66 Identities=35% Similarity=0.847 Sum_probs=56.5
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
++++++.|++.|++....+++++++++.+|++++.++|+++|||+|+++||+.+.+++.+|++|..
T Consensus 316 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~ 381 (381)
T PLN02740 316 FDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381 (381)
T ss_pred hcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence 468999999866543235789999999999999989999999999999999999888888999863
No 6
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.25 E-value=1.6e-11 Score=75.99 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=55.3
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEeec
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~~ 70 (71)
+.++++++|++.+ . ..+++++++++.+|++++.++||++|||+|+++||+.+..+..+|+++.+.
T Consensus 305 ~~~~~~i~g~~~~--~-~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~gKvvl~~~ 369 (410)
T cd08238 305 HYNNTHYVGTSGG--N-TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPGGKKLIYTQ 369 (410)
T ss_pred hhcCcEEEEeCCC--C-HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCCceEEEECC
Confidence 4578999999843 2 267999999999999999999999999999999999998444589999864
No 7
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.21 E-value=3.6e-11 Score=73.44 Aligned_cols=65 Identities=42% Similarity=0.815 Sum_probs=54.3
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
+.+++++.|++.+++.+..+++++++++.+|+++++++|+++|+|+|+++||+.+.+++..|.+|
T Consensus 306 ~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi 370 (371)
T cd08281 306 VAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI 370 (371)
T ss_pred hhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 45889999998654333467899999999999999999999999999999999999887654443
No 8
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.21 E-value=3.4e-11 Score=73.36 Aligned_cols=66 Identities=73% Similarity=1.249 Sum_probs=56.5
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEe
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~ 68 (71)
+.+++++.|++.+++..+.+++++++++.+|++++.++++++|||+|+++||+.+.+++.+|+++.
T Consensus 304 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 369 (369)
T cd08301 304 LLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH 369 (369)
T ss_pred HhcCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence 347899999986655433578999999999999999999999999999999999998888898873
No 9
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.19 E-value=7.4e-11 Score=71.31 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=55.8
Q ss_pred cccceeEeeeeecccc--cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYK--PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~--~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.+++++.|++.+... ++.++.++++++.+|+++++++|+++|+|+|+++||+.+.++.. +|+++.+
T Consensus 277 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 277 LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred hhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence 3478999999854221 13678999999999999999999999999999999999988764 7999875
No 10
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.19 E-value=6.4e-11 Score=72.01 Aligned_cols=66 Identities=26% Similarity=0.621 Sum_probs=55.6
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEe
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~ 68 (71)
+.++++++|++.+...+..+++++++++++|++++.++|+++|||+|+++||+.+.+++..|+++.
T Consensus 292 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~ 357 (358)
T TIGR03451 292 FGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE 357 (358)
T ss_pred hhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence 357889999875433234678999999999999998999999999999999999988887888875
No 11
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.17 E-value=1.4e-10 Score=70.22 Aligned_cols=63 Identities=14% Similarity=0.360 Sum_probs=54.7
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~~ 69 (71)
+.+++++.|++ .+ ..+++++++++.+|++++.++|+++|||+|+++||+.+.+++ .+|+++.+
T Consensus 280 ~~k~~~i~g~~--~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 280 IVKEISLKGSF--RF--TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred HhCCcEEEEEe--ec--cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 36789999988 33 268999999999999999899999999999999999988766 48999875
No 12
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.17 E-value=9.4e-11 Score=70.55 Aligned_cols=64 Identities=22% Similarity=0.443 Sum_probs=55.3
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+.+++++.|++.+ . .+++.++++++.+|.+++.++++++|+|+|+++||+.+.++..+|+++.+
T Consensus 276 ~~~~~~i~g~~~~--~-~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~ 339 (339)
T cd08239 276 IRKQRTLIGSWYF--S-VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF 339 (339)
T ss_pred HhCCCEEEEEecC--C-HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence 3578999999843 2 26799999999999999999999999999999999998887678999875
No 13
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.17 E-value=8.5e-11 Score=71.59 Aligned_cols=65 Identities=31% Similarity=0.506 Sum_probs=55.8
Q ss_pred CcccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEeecC
Q 035170 2 NLLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRMEE 71 (71)
Q Consensus 2 ~~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~~~ 71 (71)
+++++++|.||..|+ +.++++++++..+|++.+ .+++.++|+|+++||+.|.+++. +|.||++.+
T Consensus 274 li~~~~~i~GS~~g~---~~d~~e~l~f~~~g~Ikp--~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~~ 339 (339)
T COG1064 274 LILKEISIVGSLVGT---RADLEEALDFAAEGKIKP--EILETIPLDEINEAYERMEKGKVRGRAVIDMSS 339 (339)
T ss_pred hhhcCeEEEEEecCC---HHHHHHHHHHHHhCCcee--eEEeeECHHHHHHHHHHHHcCCeeeEEEecCCC
Confidence 356899999999764 378999999999998854 66579999999999999999886 899998753
No 14
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.15 E-value=1e-10 Score=70.03 Aligned_cols=63 Identities=27% Similarity=0.433 Sum_probs=52.8
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcC-ceeeEEEe
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRG-EGLRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~-~~~kvvi~ 68 (71)
+.++++++|+. .+.+ .+++++++++.+|+++++++++++|||+|+++||+.+.++ ..+|+++.
T Consensus 245 ~~~~~~i~~~~--~~~~-~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 245 FMKEARLRIAA--EWQP-GDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred hhcceEEEEec--ccch-hHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 45788999987 3332 6799999999999999999999999999999999987654 45899874
No 15
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=70.98 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=55.5
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc--eeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE--GLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~--~~kvvi~~ 69 (71)
+.|+++++|++.. +. ..+|+.+++++++|++++.++++|+++++|+++||+.+.+++ .+|+++.+
T Consensus 284 ~~kel~l~gs~~~-~~-~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 284 VSKELTLRGSLRP-SG-REDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred HhcccEEEeccCC-CC-cccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 4689999999621 22 368999999999999999999999999999999999998754 57999864
No 16
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.15 E-value=1.3e-10 Score=70.99 Aligned_cols=64 Identities=41% Similarity=0.849 Sum_probs=52.7
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+..+.|++.++.....+++++++++.+|+++++++++++|||+|+++||+.+.+++.+|+++.+
T Consensus 305 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~ 368 (368)
T TIGR02818 305 GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY 368 (368)
T ss_pred cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence 4457888754322235789999999999999999999999999999999999887778999864
No 17
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.13 E-value=1.3e-10 Score=70.92 Aligned_cols=64 Identities=50% Similarity=0.943 Sum_probs=54.5
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEe
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIR 68 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~ 68 (71)
+++++.|++.|++....+++++++++.+++++++++++++|+|+|+++||+.+.+++.+|+++.
T Consensus 302 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~ 365 (365)
T cd08277 302 LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT 365 (365)
T ss_pred hCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence 4789999986654323578999999999999999999999999999999999888777898863
No 18
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.11 E-value=2.1e-10 Score=70.02 Aligned_cols=63 Identities=46% Similarity=0.896 Sum_probs=52.4
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEe
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIR 68 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~ 68 (71)
+.++.|+..|.+....+++++++++.+|++++.++|+++|||+|+++||+.+.+++..|++++
T Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~ 368 (368)
T cd08300 306 GRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368 (368)
T ss_pred cCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence 456777765544333678999999999999998999999999999999999988877899874
No 19
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.03 E-value=6.7e-10 Score=68.72 Aligned_cols=63 Identities=5% Similarity=0.159 Sum_probs=49.1
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCcccccee-eeeehhhHHHHHHHHhcCceeeEEEeec
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFIT-HTVPFSEINKAFEYMLRGEGLRCIIRME 70 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it-~~~~l~~~~~a~~~~~~~~~~kvvi~~~ 70 (71)
+++++.|+. . .....+.++++++.+|+++++++++ |+|||+|+++||+.+.+++.+|+++.+.
T Consensus 328 ~~~~i~g~~--~-~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~~Kvvi~~~ 391 (393)
T TIGR02819 328 KSHSFHTGQ--T-PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAAKKFVIDPH 391 (393)
T ss_pred cCceEEecc--C-ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCceEEEEeCC
Confidence 455566543 1 1112337899999999999998888 7899999999999998887799999874
No 20
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.93 E-value=3.6e-09 Score=64.21 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=51.5
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.|++. +.+ .+++++++++.+|++++.++++ +|||+|+++||+.+.+++. +|+++++
T Consensus 287 ~~~~~~~g~~~--~~~-~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 287 AFHARALGNWG--CPP-DRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred hcccEEEEEec--CCH-HHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence 46788999883 333 6799999999999999888886 7999999999999988774 6888754
No 21
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=98.87 E-value=3.7e-09 Score=64.12 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=51.0
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcC---CCccccceeeeeeh---hhHHHHHHHHhcCceeeEEEeec
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSK---ELEVEKFITHTVPF---SEINKAFEYMLRGEGLRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g---~~~~~~~it~~~~l---~~~~~a~~~~~~~~~~kvvi~~~ 70 (71)
+.++++++|++.+ . ..+++++++++.+| +.+++++|+++|+| +|++++|+...++..+|+++.++
T Consensus 270 ~~k~~~i~g~~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~ 340 (341)
T cd08237 270 LEKGLTLVGSSRS--T-REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE 340 (341)
T ss_pred hhCceEEEEeccc--C-HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence 4589999999832 2 26799999999999 44678899999998 56777777766555689999875
No 22
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=98.87 E-value=6.6e-09 Score=63.96 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=50.7
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.++++++|++.++ . .++.++++++++|++++ .+ ++|||+|+++||+.+.+++. +|+++.+
T Consensus 287 ~~~~~~i~g~~~~~--~-~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 287 VLGRKMVGGSQIGG--M-KETQEMLEFCAKHKIVS--DI-ELIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred HhCCeEEEEeCccC--H-HHHHHHHHHHHhCCCcc--cE-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 35789999998443 2 67899999999999875 45 58999999999999988775 7999876
No 23
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=98.85 E-value=6.6e-09 Score=63.15 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=50.9
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCC----CccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKE----LEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~----~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+.+++++.|++.+ . ..++.++++++.++. .+++++++++|+|+|+++||+.+.++. +|+++.+
T Consensus 289 ~~k~~~i~g~~~~--~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~ 355 (355)
T cd08230 289 VLGNKALVGSVNA--N-KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW 355 (355)
T ss_pred hhcCcEEEEecCC--c-hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence 4588999999843 3 368999999999887 236779999999999999999876554 6999875
No 24
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=98.81 E-value=1.2e-08 Score=61.74 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=48.6
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
+.+++++.|++. .. +.++.++++++.+|+++ +++++|||+|+++||+.+.+++. +|+++
T Consensus 269 ~~~~~~i~g~~~--~~-~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 269 LFYERQIRSVTS--NT-RADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL 328 (329)
T ss_pred hhCCcEEEEeec--CC-HHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence 457889999873 22 25788999999999885 46899999999999999988775 79887
No 25
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=98.81 E-value=2.1e-08 Score=53.00 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
+.++++.+++.+|++.+ .|+++|||+++++|++.+.++.. +|+||
T Consensus 82 ~~l~~l~~l~~~G~l~~--~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 82 EALEELAELVAEGKLKP--PIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred HHHHHHHHHHHCCCeEE--eeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 34899999999998854 78899999999999999998875 89986
No 26
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=98.81 E-value=1.5e-08 Score=61.82 Aligned_cols=62 Identities=23% Similarity=0.458 Sum_probs=51.0
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEeec
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~~ 70 (71)
+.+++++.|++.++ ..++.++++++.+|+++ +++ ++|||+|+.+||+.+.+++. +|+++.++
T Consensus 289 ~~~~~~i~g~~~~~---~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~ 351 (357)
T PLN02514 289 MLGRKVITGSFIGS---MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA 351 (357)
T ss_pred hhCCcEEEEEecCC---HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence 45789999998543 25799999999999864 566 58999999999999988775 79999874
No 27
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=98.77 E-value=1.8e-08 Score=61.60 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=49.8
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.+++.+.|++.++ . .+++++++++++|++++ .+ ++|||+|+++||+.+.+++. +|+++.+
T Consensus 292 ~~~~~~i~g~~~~~--~-~~~~~~~~li~~g~i~~--~~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 292 VLGRKLVGGSDIGG--I-KETQEMLDFCAKHNITA--DI-ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred HhCCeEEEEcCcCC--H-HHHHHHHHHHHhCCCCC--cE-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 34678888988442 2 57999999999999975 45 58999999999999988875 7999876
No 28
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=98.76 E-value=3.6e-08 Score=59.69 Aligned_cols=63 Identities=29% Similarity=0.635 Sum_probs=52.4
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhH-HHHHHHHhcCce--eeEEEe
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEI-NKAFEYMLRGEG--LRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~-~~a~~~~~~~~~--~kvvi~ 68 (71)
+.++++|.|++. +. .++++++++++.+|++++.++++++|+|+|+ ++||+.+.++.. +|++|.
T Consensus 286 ~~~~~~i~g~~~--~~-~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 286 VLKEKTLTGSIC--YT-REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred HhhCcEEEEEec--cC-cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 357899999873 32 3789999999999999988899999999997 689999888763 899873
No 29
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=98.75 E-value=3.2e-08 Score=60.15 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=53.7
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcC--CCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSK--ELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g--~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+.+++++.|++. +.+ .++.++++++.++ .+++.++++++|+++|+++||+.+.++..+|++|.+
T Consensus 296 ~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 361 (361)
T cd08231 296 VRKNLTIIGVHN--YDP-SHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP 361 (361)
T ss_pred hhcccEEEEccc--CCc-hhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence 457889999873 333 6799999999998 677888999999999999999998887778999864
No 30
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=98.73 E-value=2e-08 Score=61.17 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=51.7
Q ss_pred cccceeEeeeeecccc--cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEeec
Q 035170 3 LLNERTLKGTFFGNYK--PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~--~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~~ 70 (71)
+.+++++.|++.+.+. ....+.++++++++|++++ .++.+|||+++++|++.+.+++. +|+++++.
T Consensus 278 ~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~--~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~ 346 (348)
T PLN03154 278 ISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY--IEDMSEGLESAPAALVGLFSGKNVGKQVIRVA 346 (348)
T ss_pred hhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC--ceecccCHHHHHHHHHHHHcCCCCceEEEEec
Confidence 3578899998743221 1145788999999998864 57778999999999999988875 79999874
No 31
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=2.1e-07 Score=56.70 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=53.7
Q ss_pred CcccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEeec
Q 035170 2 NLLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRME 70 (71)
Q Consensus 2 ~~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~~ 70 (71)
+.++.+.|.||+.|+. .+.++++++.++|.+.+ .| +..+++++++||+.|..++. .|.|++.+
T Consensus 292 lil~~~~I~GS~vG~~---ket~E~Ldf~a~~~ik~--~I-E~v~~~~v~~a~erm~kgdV~yRfVvD~s 355 (360)
T KOG0023|consen 292 LILGRKSIKGSIVGSR---KETQEALDFVARGLIKS--PI-ELVKLSEVNEAYERMEKGDVRYRFVVDVS 355 (360)
T ss_pred hhcccEEEEeeccccH---HHHHHHHHHHHcCCCcC--ce-EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence 3568899999998863 78999999999998754 55 58999999999999999986 79998864
No 32
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.57 E-value=3.6e-07 Score=54.58 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=50.3
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+.++.++.|++. ..+.++++++.+|++++.+++++.||++++++||+.+.++..+|+++.+
T Consensus 259 ~~~~~~i~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~ 319 (319)
T cd08242 259 VVNEITLVGSRC------GPFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP 319 (319)
T ss_pred eecceEEEEEec------ccHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence 356777887762 2488999999999998777889999999999999998876668999864
No 33
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.52 E-value=4.2e-07 Score=55.85 Aligned_cols=66 Identities=36% Similarity=0.821 Sum_probs=53.0
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
.++.++.|++.|.+....++.++++.+.++.++++++++++|+++|+.+||+.+.+++..|+++.+
T Consensus 308 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~ 373 (373)
T cd08299 308 LTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF 373 (373)
T ss_pred hcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence 457788888765443225678888888888888888899999999999999998877777888753
No 34
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=98.48 E-value=3.9e-07 Score=54.72 Aligned_cols=63 Identities=8% Similarity=0.201 Sum_probs=47.3
Q ss_pred cccceeEeeeeeccccc---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEe
Q 035170 3 LLNERTLKGTFFGNYKP---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~ 68 (71)
+.+++++.|++.+.+.. ...+.++++++. |.+ +++++++|||+|+++||+.+.++. .+|+++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~ 324 (324)
T cd08291 258 IFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TEL--KTTFASRYPLALTLEAIAFYSKNMSTGKKLLI 324 (324)
T ss_pred hhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Ccc--ccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence 45788999988543321 135677788887 755 568999999999999999988865 4898873
No 35
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=98.39 E-value=1.1e-06 Score=53.84 Aligned_cols=64 Identities=42% Similarity=0.841 Sum_probs=52.0
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
.++.+++|++.+++.....+.+++++++++.+++.+++++.++++++++||+.+.+++..|+++
T Consensus 301 ~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~ 364 (365)
T cd05279 301 LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTIL 364 (365)
T ss_pred hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeee
Confidence 4567788887543333367899999999999988778899999999999999988877778776
No 36
>PRK10083 putative oxidoreductase; Provisional
Probab=98.39 E-value=1.8e-06 Score=51.95 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=51.0
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc--eeeEEEeecC
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE--GLRCIIRMEE 71 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~--~~kvvi~~~~ 71 (71)
+++++.|+.. . ...+.++++++.+|.+++.+++++.|+++++++|++.+.++. .+|+++.+.|
T Consensus 275 ~~~~~~~~~~---~-~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 275 KELSIFSSRL---N-ANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred cceEEEEEec---C-hhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 5677777762 1 367999999999999988767889999999999999987543 4899998764
No 37
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.33 E-value=3.2e-06 Score=51.30 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=47.8
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCcccccee-eeeehhhHHHHHHHHhcCc--eeeEEEee
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFIT-HTVPFSEINKAFEYMLRGE--GLRCIIRM 69 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it-~~~~l~~~~~a~~~~~~~~--~~kvvi~~ 69 (71)
+..++.+++. ......++++++++.+|.+++..+++ +.++|+|+++|++.+.+++ .+|+++.+
T Consensus 286 ~~~~i~~~~~--~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 286 GHKTINGGLC--PGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred cccEEEEeec--CCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 4556666552 21236899999999999998855544 5699999999999988865 48999864
No 38
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.33 E-value=1.8e-06 Score=52.11 Aligned_cols=64 Identities=16% Similarity=0.342 Sum_probs=52.0
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+.+++++.|+.. .. ...+.++++++.+|.+++.+++++.++++++++|++.+.++...|++|++
T Consensus 282 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~ 345 (345)
T cd08287 282 FFRNVGLAGGPA--PV-RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP 345 (345)
T ss_pred HhcceEEEEecC--Cc-HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence 456788887652 22 26789999999999998877788999999999999998877767999864
No 39
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.26 E-value=4.1e-06 Score=50.50 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=49.9
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.+++ .+.+ ..+.++++++.+|.+++.+++++.+++++++++++.+.++.. +|++++
T Consensus 279 ~~~~~~~~~~--~~~~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 279 RKELTLQFSL--GYTP-EEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred hcceEEEEEe--cccH-HHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 3667777766 3333 578999999999999877788899999999999999888664 788863
No 40
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=98.20 E-value=7.3e-06 Score=49.53 Aligned_cols=63 Identities=24% Similarity=0.411 Sum_probs=49.7
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcC---ceeeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRG---EGLRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~---~~~kvvi~~ 69 (71)
+.+++++.+...+ ...+.++++++++|.+++.+++++++++++++++++.+.+. +.+|++|+|
T Consensus 280 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 280 WIKNITITTGLVD----TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred hhcCcEEEeecCc----hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 3467777775421 15688899999999998877788999999999999998875 357999875
No 41
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=98.17 E-value=7.2e-06 Score=50.39 Aligned_cols=62 Identities=5% Similarity=0.064 Sum_probs=48.5
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
++..+.|++. .. ...+..+++++.++++++.++++++++++++++|++.+.++...|+++.+
T Consensus 314 ~~~~~~~~~~--~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~~ 375 (375)
T cd08282 314 KGLSFGTGQA--PV-KKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIKP 375 (375)
T ss_pred cCcEEEEecC--Cc-hhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeCC
Confidence 4555666652 22 36788899999999998766789999999999999998876666888753
No 42
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=98.15 E-value=8.2e-06 Score=50.40 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=50.4
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc--eeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE--GLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~--~~kvvi~~ 69 (71)
.+++++.++. .+. ...+.++++++.++.+++.+++++.|+++++.+|++.+..++ .+|+++++
T Consensus 322 ~~~~~i~~~~--~~~-~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 322 NKGLTLRMGQ--THV-QRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred hCCcEEEecc--CCc-hHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 4667777765 222 367899999999999988777888999999999999988765 47999864
No 43
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=98.12 E-value=1e-05 Score=49.53 Aligned_cols=64 Identities=25% Similarity=0.530 Sum_probs=49.0
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~ 68 (71)
.+++++.++..+...+...+.++++++.+|++++.++++ .++++++++|++.+.++...|++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~-~~~l~~~~~a~~~~~~~~~~k~~~~ 365 (365)
T cd08278 302 VSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVT-FYPFEDINQAIADSESGKVIKPVLR 365 (365)
T ss_pred hcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheE-EecHHHHHHHHHHHHCCCceEEEEC
Confidence 467778777643222335678899999999987655665 8999999999999988877898874
No 44
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.11 E-value=9.1e-07 Score=52.44 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=37.2
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHc--CCCccccceeeeeehhhH
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMS--KELEVEKFITHTVPFSEI 50 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~--g~~~~~~~it~~~~l~~~ 50 (71)
+.+++++.|++. +.+ .+++++++++.+ ++++++++|||+|||+|+
T Consensus 234 ~~~~~~i~g~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 234 VRRWLTIRGVHN--YEP-RHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred HhCCcEEEecCC--CCH-HHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 458999999983 333 679999999998 578888999999999874
No 45
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=98.09 E-value=1.7e-05 Score=48.95 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=48.3
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
.+..++.|+.. ......+.++++++++|.+++..++++.|+++++++|++.+.++..+|+++
T Consensus 322 ~~~~~l~~~~~--~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv 383 (384)
T cd08265 322 VRRAQIVGAQG--HSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383 (384)
T ss_pred hCceEEEEeec--cCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence 35667888762 111256999999999999987777889999999999999976665678775
No 46
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=98.06 E-value=2.9e-05 Score=46.93 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=48.7
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEeec
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~~ 70 (71)
+++++++.|++.... ...+..+++++.++ +++.+++++.++++++++||+.+..+..+|++++|+
T Consensus 277 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~ 341 (341)
T PRK05396 277 IFKGLTIKGIYGREM--FETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD 341 (341)
T ss_pred hhcceEEEEEEccCc--cchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence 346778888752211 24566788999998 556667889999999999999987765689998764
No 47
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=98.04 E-value=1.3e-05 Score=48.42 Aligned_cols=60 Identities=15% Similarity=0.462 Sum_probs=48.5
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
+.+++++.|++.+ .+ .++..+++++.+|++++ .+ +.++++++++||+.+.+++. +|+|++
T Consensus 277 ~~~~~~i~~~~~~--~~-~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 277 IFGRKSVAGSLIG--GR-KETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred hcCceEEEEeccc--CH-HHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 3578999998843 32 67899999999998764 45 68999999999999998775 798874
No 48
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.03 E-value=2.9e-05 Score=46.82 Aligned_cols=62 Identities=19% Similarity=0.423 Sum_probs=49.7
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~~ 69 (71)
.+++++.|.+ .+ ...+.++++++.+|.+++.+++++.|++++++++++.+.++. .+|+++++
T Consensus 277 ~~~~~~~~~~--~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 277 AKELDLRGSF--RF--DDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred hcceEEEEEe--cC--HHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 4667777765 22 257889999999999887777888999999999999987765 47998864
No 49
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=98.03 E-value=2.3e-05 Score=47.60 Aligned_cols=60 Identities=25% Similarity=0.530 Sum_probs=47.6
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi 67 (71)
.+++++.|+..+ ...+.++++++.+|.+++.+++++.|+++++++|++.+.++. .+|+++
T Consensus 290 ~~~~~i~~~~~~----~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 290 RKELDVLGSHLG----PYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred ccccEEEEeccC----chhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 456778887632 146889999999999987766789999999999999988765 367764
No 50
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=98.01 E-value=3.4e-05 Score=46.64 Aligned_cols=64 Identities=25% Similarity=0.374 Sum_probs=48.8
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
.+++++.|.+ +... ...+.++++++.+|.+++.+++++.++++++.++++.+.++..+|+++++
T Consensus 277 ~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~ 340 (340)
T TIGR00692 277 FKGLTIYGIT-GRHM-FETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL 340 (340)
T ss_pred hcceEEEEEe-cCCc-hhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 3566777655 1111 24578899999999998767788999999999999998876668998864
No 51
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=98.01 E-value=3.4e-05 Score=47.16 Aligned_cols=63 Identities=35% Similarity=0.732 Sum_probs=48.3
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
++..+.|++.+.......+.++++++.++.+++.+++++.++++|+.+|++.+.+++..|.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 300 SEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred cCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 455667765443222367889999999999987767888999999999999988877666655
No 52
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=98.00 E-value=1.2e-05 Score=48.61 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=46.3
Q ss_pred ccceeEeeeeeccccc--CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKP--RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~--~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.|++.+.+.. ...+.++++++.+|++++. +...|||+++++|++.+.+++. +|+++++
T Consensus 272 ~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 272 YKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLFTGSNIGKQVVKV 338 (338)
T ss_pred hccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence 4667888866332210 1236778899999988764 4457999999999999988764 7998863
No 53
>PLN02702 L-idonate 5-dehydrogenase
Probab=97.98 E-value=3.1e-05 Score=47.31 Aligned_cols=61 Identities=31% Similarity=0.561 Sum_probs=48.1
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeeh--hhHHHHHHHHhcCc-eeeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPF--SEINKAFEYMLRGE-GLRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l--~~~~~a~~~~~~~~-~~kvvi~ 68 (71)
.+++++.|++ .+ ...+..+++++.++++++.+++++.|++ +++++|++.+.++. .+|+++.
T Consensus 300 ~~~~~i~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 300 AREVDVVGVF--RY--RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred hCccEEEEec--cC--hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 4677888876 23 2578899999999999877778888665 79999999887765 4799885
No 54
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=97.97 E-value=4.5e-05 Score=46.17 Aligned_cols=64 Identities=22% Similarity=0.285 Sum_probs=48.5
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
.+++++.|... ......+.++++++.+|.+++.+++++.+++++++++|+.+.++..+|++++|
T Consensus 278 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~ 341 (341)
T cd05281 278 FKGLTVQGITG--RKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP 341 (341)
T ss_pred ccceEEEEEec--CCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence 35666766541 11124577899999999988777788899999999999998876666988865
No 55
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=97.94 E-value=2.7e-05 Score=47.65 Aligned_cols=63 Identities=32% Similarity=0.509 Sum_probs=48.8
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.|++ ...+...+.++++++.++.+++..++++.++++++.++++.+.++.. +|+|+.
T Consensus 304 ~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 304 RRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred hCCeEEEecC--CCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 4667777765 22223568889999999998876678899999999999999888764 688863
No 56
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.94 E-value=8.1e-06 Score=51.37 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=52.2
Q ss_pred ccceeEeeeeecccccCCCHH--HHHHHHHcCCC-ccccceeee-----eehh-hHHHHHHHHhcCce--eeEEEeec
Q 035170 4 LNERTLKGTFFGNYKPRSDLP--SVVEKYMSKEL-EVEKFITHT-----VPFS-EINKAFEYMLRGEG--LRCIIRME 70 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~--~~i~l~~~g~~-~~~~~it~~-----~~l~-~~~~a~~~~~~~~~--~kvvi~~~ 70 (71)
.+++++.|++ .+....+|+ +.++++++|++ ++.++++|. ++|+ |+.++++.+.+++. .|+++.|.
T Consensus 302 ~~el~i~g~~--~~~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 302 ENAVEVVNIK--PQVDRYELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred hhccEEEEcc--CCcceEEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 4688999998 343222566 79999999999 999999999 9999 99999999987653 68887763
No 57
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=97.93 E-value=4.2e-05 Score=46.16 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=49.1
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
.+++++.+... .. ...+.++++++.++.+++.+++++.+++++++++|+.+..++.+|+++.+
T Consensus 282 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~~ 344 (344)
T cd08284 282 NKNLTLRFGRC--PV-RSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLDP 344 (344)
T ss_pred hcCcEEEEecC--Cc-chhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEecC
Confidence 45677766541 22 36899999999999998777788899999999999988776558888753
No 58
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=97.90 E-value=4.9e-05 Score=45.69 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=48.0
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.|++. .. ..++.++++++.+|.++ +.+++.++++++++|++.+.++.. +|+++.+
T Consensus 272 ~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 272 LKDIEIIGHIS--AT-KRDVEEALKLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred hcccEEEEecC--CC-HHHHHHHHHHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence 46778888762 22 26789999999999875 457889999999999999887654 7888865
No 59
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.89 E-value=3.8e-05 Score=46.35 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=49.0
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.+++++.|+..+ . ...+.++++++.++++++ ++++.++++++.++|+.+..+.. .|+++.|
T Consensus 288 ~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 288 YLKDLTLFGSTLG--T-REVFRRLVRYIEEGEIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred hhcceEEEEeecC--C-HHHHHHHHHHHHCCCccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 4567888888743 2 267899999999998754 57789999999999999887654 6888864
No 60
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=97.88 E-value=2.8e-05 Score=46.77 Aligned_cols=63 Identities=17% Similarity=0.319 Sum_probs=46.0
Q ss_pred ccceeEeeeeeccccc---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKP---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
++++++.|++.+.+.+ ...+.++++++.+|++++. +...|+|+++++|++.+.+++. +|+++.
T Consensus 259 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 259 YQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYK--EYVIEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred hhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccc--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 3677888876322211 1357889999999998765 4457899999999999988764 788863
No 61
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=97.83 E-value=6e-05 Score=45.54 Aligned_cols=59 Identities=17% Similarity=0.399 Sum_probs=46.9
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.|+..+ .. .++..+++++.++.++ +++ +.||++|+.+|++.+.+++. +|++++
T Consensus 274 ~~~~~i~~~~~~--~~-~~~~~~~~~~~~~~l~--~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 274 MGRKSIHGWPSG--TA-LDSEDTLKFSALHGVR--PMV-ETFPLEKANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred hcccEEEEeCcC--CH-HHHHHHHHHHHhCCCC--ceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence 678999998733 22 5788999999888775 456 58999999999999888765 798874
No 62
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=97.82 E-value=6.6e-05 Score=46.38 Aligned_cols=60 Identities=12% Similarity=0.262 Sum_probs=47.1
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcC-ce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRG-EG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~-~~-~kvvi~ 68 (71)
.++.++.|++.+ .. .++.++++++.++.+++ .++++|+++|+++|++.+.++ .. +|+++.
T Consensus 331 ~~~~~i~g~~~~--~~-~~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv~ 392 (393)
T cd08246 331 MRQKRIQGSHFA--ND-REAAEANRLVMKGRIDP--CLSKVFSLDETPDAHQLMHRNQHHVGNMAVL 392 (393)
T ss_pred hheeEEEecccC--cH-HHHHHHHHHHHcCCcee--eeeEEEeHHHHHHHHHHHHhCccccceEEEe
Confidence 467788888733 22 57889999999998764 578899999999999998877 43 688764
No 63
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=97.81 E-value=7.1e-05 Score=45.28 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=48.8
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.|+.. .. ...+.+++++++++.+++.+++++.++++++++|++.+..+.. +|++++
T Consensus 282 ~~~~~~~~~~~--~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 282 ARELEIVGSHG--MP-AHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred hcccEEEeCCc--CC-HHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 45677888762 22 3678999999999998876667889999999999999887654 677763
No 64
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=97.74 E-value=0.00018 Score=43.45 Aligned_cols=61 Identities=31% Similarity=0.598 Sum_probs=47.4
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
.+++++.+++ ...+ ..+.++++++.++.+++.+.+...++++++.++++.+..++..|+++
T Consensus 282 ~~~~~l~~~~--~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi 342 (343)
T cd08235 282 YREITITGSY--AASP-EDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVI 342 (343)
T ss_pred hCceEEEEEe--cCCh-hhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEe
Confidence 3566777766 2333 67889999999998876556778899999999999988766568876
No 65
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=97.74 E-value=5.3e-05 Score=45.33 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=45.5
Q ss_pred ccceeEeeeeecccc--cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYK--PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~--~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.|++.+.+. ....+.++++++.+|.+++.+ ...++++++++|++.+.+++. +|+++++
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~--~~~~~l~~~~~A~~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 263 FKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYRE--HVTEGFENMPQAFIGMLKGENTGKAIVKV 329 (329)
T ss_pred hhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCc--ccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 467788887632210 012366788999999987653 346899999999999888764 7998863
No 66
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.70 E-value=0.00021 Score=43.32 Aligned_cols=60 Identities=30% Similarity=0.617 Sum_probs=47.1
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc--eeeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE--GLRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~--~~kvvi 67 (71)
.+++++.+++ .+ ...+.++++++.++.+++.+++++.|+++++.+|++.+.++. .+|++|
T Consensus 280 ~~~~~~~~~~--~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 280 LREIDIRGVF--RY--ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred hCCcEEEEec--cC--hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 3566777765 22 257889999999998876566788999999999999988764 489987
No 67
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=97.66 E-value=0.00016 Score=44.91 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=46.9
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.++.++.|++.+.. .++.++++++.++.+++ .++++++++|++++|+.+.++.. +|+++.+
T Consensus 326 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 387 (398)
T TIGR01751 326 MRQKRIQGSHFANL---REAWEANRLVAKGRIDP--TLSKVYPLEEIGQAHQDVHRNHHQGNVAVLV 387 (398)
T ss_pred hcccEEEccccCcH---HHHHHHHHHHHCCCccc--ceeeEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence 35566777764322 45788999999998864 57899999999999999887664 7888875
No 68
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=97.66 E-value=0.00013 Score=43.75 Aligned_cols=46 Identities=11% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEee
Q 035170 24 PSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIRM 69 (71)
Q Consensus 24 ~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~~ 69 (71)
.++++++.+|.+++..+.+++|++++++++++.+.++. ..|+++.+
T Consensus 281 ~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 327 (327)
T PRK10754 281 NELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLIP 327 (327)
T ss_pred HHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 45788999999987666678999999999999988766 47999864
No 69
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=97.65 E-value=0.00022 Score=42.94 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=47.4
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.+++++.++..+ . ...+.++++++.+|.+++ . .+.|+++++++|++.+.+++. +|+++.|
T Consensus 279 ~~~~~~~~~~~~~--~-~~~~~~~~~~l~~g~l~~--~-~~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 279 VPTEISVIGSLWG--T-RAELVEVVALAESGKVKV--E-ITKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred hhcceEEEEEecc--c-HHHHHHHHHHHHhCCCCc--c-eEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 3578888887632 2 267899999999998764 3 468999999999999888764 6888764
No 70
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=97.62 E-value=0.00029 Score=41.79 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=46.8
Q ss_pred ccceeEeeeeecccc-cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce--eeEEE
Q 035170 4 LNERTLKGTFFGNYK-PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG--LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~-~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~--~kvvi 67 (71)
.+++++.+...+... ....+.++++++.+|.+++.+.+++.+++++++++++.+.+++. +|+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 245 WKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred hcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 355666665422110 12568889999999998765567789999999999999988753 78886
No 71
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=97.62 E-value=0.00023 Score=42.45 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=47.0
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.+++++.|++. .. ...+.++++++.++.+++ ++++.|++++++++++.+..+.. .|+++++
T Consensus 280 ~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 280 FWRQLSILGSTM--GT-KAELDEALRLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred hhcceEEEEEec--CC-HHHHHHHHHHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 345677777762 22 256888999999998754 67889999999999999877654 6888764
No 72
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=97.59 E-value=0.00028 Score=42.31 Aligned_cols=60 Identities=27% Similarity=0.419 Sum_probs=47.1
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.++.++.|++. ..+ ..+..+++++.+|.+++. .+.+++++++++++.+.+++. +|+++.|
T Consensus 278 ~~~~~~~~~~~--~~~-~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 278 ARELRIIGSFG--GTP-EDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred hCccEEEEecc--CCH-HHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 45677888772 232 678899999999988764 468999999999999887664 7988875
No 73
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=97.57 E-value=0.00021 Score=43.71 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=44.7
Q ss_pred ccceeEeeeeecccc---cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcC-c-eeeEEEee
Q 035170 4 LNERTLKGTFFGNYK---PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRG-E-GLRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~---~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~-~-~~kvvi~~ 69 (71)
.+.+.++|+..+... ..+.+.++.+++.+|.+ ++.|+.+|||+|..++......+ + .+|+++.+
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~ 326 (326)
T COG0604 258 GKRLTLRGVTLGSRDPEALAEALAELFDLLASGKL--KPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326 (326)
T ss_pred hccEEEEEecceecchHHHHHHHHHHHHHHHcCCC--cceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence 367788888743220 12467778999999987 45888999999976665543333 4 48999874
No 74
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.56 E-value=0.00023 Score=42.14 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=47.3
Q ss_pred cceeEeeeeecc-cccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 5 NERTLKGTFFGN-YKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 5 ~~~~i~Gs~~g~-~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
++.++.+++.+. ......+..+++++.++++++ .+.+++++++++++++.+..+.. +|+++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 241 GGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDP--RIGWRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred ccceEEEEEccCHHHHHHHHHHHHHHHHCCCccc--eeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 477888877432 011246788899999999875 46789999999999999887664 7888764
No 75
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=97.53 E-value=0.00048 Score=41.57 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=47.4
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce--eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG--LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~--~kvvi~~ 69 (71)
.+++++.++..+ . ...+.++++++.+|.+++.+++...+++++++++++.+..++. .|+++++
T Consensus 283 ~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 283 GKNLTFKTGLVP--V-RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred hceeEEEeeccC--c-hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 456666665421 1 2578899999999998876666788999999999998877653 6888764
No 76
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=97.48 E-value=0.0004 Score=41.46 Aligned_cols=64 Identities=13% Similarity=0.279 Sum_probs=46.6
Q ss_pred cccceeEeeeeecccc----c---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEe
Q 035170 3 LLNERTLKGTFFGNYK----P---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~----~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~ 68 (71)
+.++.++.|+..+... + ...+..+++++.+|.+++. +++.|+++|+.+|++.+.++. ..|++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 324 (324)
T cd08292 253 IFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPGRAGKVLLR 324 (324)
T ss_pred hhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence 4567888887643211 0 1357889999999988753 478899999999999887754 4688763
No 77
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=97.47 E-value=0.00048 Score=41.15 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=44.8
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
++.++.|+. .+. ..++.++++++.+|.++ +++++.|+++++++||+.+.++.. +|++++
T Consensus 273 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 273 KEIRIIGSI--SAT-KADVEEALKLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred CCcEEEEec--CCC-HHHHHHHHHHHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 456666665 222 25688899999999875 467889999999999999887664 687763
No 78
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=97.45 E-value=0.0005 Score=41.74 Aligned_cols=61 Identities=21% Similarity=0.380 Sum_probs=47.0
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
++++++.|++.+ .+ +++.++++++++|.+++ .....++++++++|++.+.+++. +|+++++
T Consensus 289 ~~~~~i~~~~~~--~~-~~~~~~~~ll~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 350 (350)
T cd08240 289 LRALTIQGSYVG--SL-EELRELVALAKAGKLKP--IPLTERPLSDVNDALDDLKAGKVVGRAVLKP 350 (350)
T ss_pred hcCcEEEEcccC--CH-HHHHHHHHHHHcCCCcc--ceeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence 367788887732 22 56889999999998865 35568999999999999887654 7888753
No 79
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=97.42 E-value=0.00054 Score=40.84 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=46.3
Q ss_pred ccceeEeeeeeccccc---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKP---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.++......+ ...+.++++++.++.++ +++++.++++++++|++.+.++.. +|+++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~ 324 (324)
T cd08244 257 RRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLV--PVVGQTFPLERAAEAHAALEARSTVGKVLLLP 324 (324)
T ss_pred hCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCcc--CccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence 4567777766322111 13467788899999875 457789999999999999887654 6988764
No 80
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=97.40 E-value=0.00058 Score=41.15 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=45.2
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
++.++.|++.+ .. .++.++++++.+|.+++ .++ .++++++++||+.+.++.. +|+++.+
T Consensus 277 ~~~~~~~~~~~--~~-~~~~~~~~l~~~g~l~~--~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~ 336 (338)
T PRK09422 277 DGIEVVGSLVG--TR-QDLEEAFQFGAEGKVVP--KVQ-LRPLEDINDIFDEMEQGKIQGRMVIDF 336 (338)
T ss_pred cCcEEEEecCC--CH-HHHHHHHHHHHhCCCCc--cEE-EEcHHHHHHHHHHHHcCCccceEEEec
Confidence 56777776632 22 56889999999998754 465 6899999999999888664 7888865
No 81
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=97.39 E-value=0.00079 Score=40.44 Aligned_cols=59 Identities=25% Similarity=0.537 Sum_probs=46.2
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
+++++.+++.. ...+.++++++.++.+++.++++..+++++++++++.+.....+|+++
T Consensus 275 ~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi 333 (334)
T cd08234 275 KELTIIGSFIN----PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV 333 (334)
T ss_pred CCcEEEEeccC----HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhcCCceEEEe
Confidence 56677776521 256889999999999887666788999999999999988743478876
No 82
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=97.38 E-value=0.0011 Score=40.00 Aligned_cols=62 Identities=29% Similarity=0.522 Sum_probs=46.9
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc--eeeEEEee
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE--GLRCIIRM 69 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~--~~kvvi~~ 69 (71)
+++++.++. ... ...+.++++++.+|.+++.+.+...+++++++++++.+.+++ ..|+++++
T Consensus 274 ~~~~~~~~~--~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 274 KELTILGSR--NAT-REDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred CCCEEEEec--cCC-hhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 456666654 222 257889999999999876445677999999999999998763 47998864
No 83
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=97.37 E-value=0.00067 Score=41.02 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=36.3
Q ss_pred CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+.++++++.+|.+++. +...++|+++++||+.+.+++. +|+++.+
T Consensus 299 ~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~ 345 (345)
T cd08293 299 AIAQLSQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV 345 (345)
T ss_pred HHHHHHHHHHCCCccce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 35677789999998764 3445699999999999988764 7998864
No 84
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.36 E-value=0.00087 Score=40.03 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=47.3
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
+.+++++.|+..+. ...+.++++++.++.+++ +.++.+++++++++++.+.++.. .|++++
T Consensus 274 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 335 (336)
T cd08276 274 LTKGATLRGIAVGS---RAQFEAMNRAIEAHRIRP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIR 335 (336)
T ss_pred hhcceEEEEEecCc---HHHHHHHHHHHHcCCccc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence 45788888887442 257889999999887754 46789999999999999887654 688775
No 85
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.33 E-value=0.00071 Score=40.61 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=42.8
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.++..+.|+.. .. ...+.++++++.++.+++ . ++.|+++++++||+.+.+++. +|+++
T Consensus 271 ~~~~~i~~~~~--~~-~~~~~~~~~l~~~~~l~~--~-~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 271 WGEKTIRSVAN--LT-RQDGEEFLKLAAEIPIKP--E-VETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred hCceEEEEecC--CC-HHHHHHHHHHHHcCCCCc--e-EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 34566777662 22 256888999999998765 3 578999999999999888654 67663
No 86
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=97.33 E-value=0.00056 Score=41.28 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=39.7
Q ss_pred CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEeec
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRME 70 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~~ 70 (71)
.-.+++.++.+|.+++ -|.|.|||+++.+|..++.++.. +|+++.+.
T Consensus 284 ~v~rl~alvnsg~lk~--~I~~~ypls~vadA~~diesrktvGkvlLlp~ 331 (336)
T KOG1197|consen 284 YVARLFALVNSGHLKI--HIDHVYPLSKVADAHADIESRKTVGKVLLLPG 331 (336)
T ss_pred HHHHHHHHhhcCccce--eeeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence 3467778899998866 58899999999999999999764 89999874
No 87
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=97.31 E-value=0.0012 Score=39.87 Aligned_cols=64 Identities=23% Similarity=0.411 Sum_probs=47.4
Q ss_pred ccceeEeeeeecccc--cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhc-Cc-eeeEEE
Q 035170 4 LNERTLKGTFFGNYK--PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLR-GE-GLRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~--~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~-~~-~~kvvi 67 (71)
.++.++.|++..... ....+.++++++.++.+++.+.+...++++++.++++.+.+ +. ..|+++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 276 RKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred hcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 567888887643211 13568889999999988755567789999999999999887 43 367764
No 88
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.12 E-value=0.002 Score=38.96 Aligned_cols=60 Identities=28% Similarity=0.479 Sum_probs=45.6
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.|...+ . ..++.++++++.++.+++ .+ +.|++++++++|+.+..+.. +|+++++
T Consensus 281 ~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 281 LRGITIVGSLVG--T-RQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred hcccEEEEeccC--C-HHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 467777776522 1 267889999999998864 44 57999999999999887664 7888864
No 89
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=97.10 E-value=0.0007 Score=40.58 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=45.4
Q ss_pred ccceeEeeeeecccc--cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYK--PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~--~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.++.++.++...... ....+.++++++.+|.+++....++.++++++++|++.+..+.. +|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~ 329 (329)
T cd08250 262 AKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE 329 (329)
T ss_pred hcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence 456777776532110 11346788899999988764445567999999999999887654 688763
No 90
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=97.10 E-value=0.0026 Score=37.94 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=39.9
Q ss_pred ccceeEeeeeecccccCCCHHHH----HHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSV----VEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~----i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.++..+...+ .....+ .+++..+. .+.+.+.|+++|++++++.+.+++. +|++++
T Consensus 259 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~ 324 (325)
T cd05280 259 LRGVSLLGIDSVNCPM-ELRKQVWQKLATEWKPDL---LEIVVREISLEELPEAIDRLLAGKHRGRTVVK 324 (325)
T ss_pred eeeeEEEEEEeecCch-hHHHHHHHHHHHHHhcCC---ccceeeEecHHHHHHHHHHHhcCCcceEEEEe
Confidence 5788888876432221 223333 33444552 2346789999999999999887764 788875
No 91
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=97.08 E-value=0.0018 Score=40.12 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEeec
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIRME 70 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~~~ 70 (71)
+....+.++++.|++ .+.+.+.||++++.+|++.+.... .+|+++.+.
T Consensus 298 ~~l~~l~~~ie~gki--kp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 298 EYLKALVELIEKGKI--KPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred HHHHHHHHHHHcCcc--cCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence 567888899999965 668899999999999999987754 489998764
No 92
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=97.01 E-value=0.0022 Score=38.23 Aligned_cols=62 Identities=10% Similarity=0.215 Sum_probs=45.5
Q ss_pred cceeEeeeeecccc----c---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 5 NERTLKGTFFGNYK----P---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~----~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
++.++.+...+.+. + .+.+.++++++.+|.+++ .+++.|+++++.+||+.+.++.. .|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 323 (323)
T cd05282 254 KDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTT--PVGAKFPLEDFEEAVAAAEQPGRGGKVLLT 323 (323)
T ss_pred cCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCccc--CccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence 67888887744321 1 124777889999998764 46789999999999999887654 687763
No 93
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=96.99 E-value=0.0031 Score=37.71 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=44.6
Q ss_pred cceeEeeeeecccccC-------CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEeec
Q 035170 5 NERTLKGTFFGNYKPR-------SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRME 70 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~-------~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~~ 70 (71)
+.+++.|+..+..... ..+.++++++.++.+++ ++++.+++++++++++.+..+.. +|+++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~ 329 (334)
T PTZ00354 258 KRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN 329 (334)
T ss_pred hCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence 4557777763321100 12366788899998754 57789999999999998887654 79998763
No 94
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.95 E-value=0.002 Score=38.70 Aligned_cols=58 Identities=22% Similarity=0.511 Sum_probs=43.4
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.++.++.|++.+. ...+.++++++.++.+++ ..+.++++++.++|+.+.++.. .|+++
T Consensus 272 ~~~~~~~~~~~~~---~~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 272 MKRQSIAGSTHGG---RADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred hCCCEEEEeccCC---HHHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 3567777777432 256888999999998864 3468999999999999887654 57654
No 95
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.92 E-value=0.0022 Score=37.98 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=42.6
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.+++++.++..... ....+..+++++.++.+++ +.++.++++|+++|++.+.++.. .|+++
T Consensus 258 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~a~~~~~~~~~~~kvvv 319 (320)
T cd08243 258 GVNLTLTGSSSGDV-PQTPLQELFDFVAAGHLDI--PPSKVFTFDEIVEAHAYMESNRAFGKVVV 319 (320)
T ss_pred ccceEEEecchhhh-hHHHHHHHHHHHHCCceec--ccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 34566666542111 1134778889999998754 46789999999999999887654 67765
No 96
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=96.89 E-value=0.0022 Score=37.68 Aligned_cols=45 Identities=27% Similarity=0.566 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcC--ceeeEEE
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRG--EGLRCII 67 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~--~~~kvvi 67 (71)
..+.++++++.++.++ +++.+.++++++++||+.+..+ ..+|+++
T Consensus 231 ~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 231 RNLEEALDLLAEGRLE--ALITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred ccHHHHHHHHHcCCcc--ccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 4688999999999864 4577899999999999998876 4578764
No 97
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=96.71 E-value=0.002 Score=38.57 Aligned_cols=63 Identities=13% Similarity=0.221 Sum_probs=43.4
Q ss_pred cccceeEeeeeeccccc--CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 3 LLNERTLKGTFFGNYKP--RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~--~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
+.++.++.|+....... .+.+.++++++.+|.+++.+. ..+++++++++++.+.+++. .|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 264 ITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRED--VVEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred hhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCcccccc--ccccHHHHHHHHHHHhcCCCccceeC
Confidence 34677778766322110 134677889999999876544 45899999999999887654 57653
No 98
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=96.71 E-value=0.0069 Score=37.22 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=47.5
Q ss_pred CcccceeEeeeeecccccC--------CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcC--ceeeEEEeec
Q 035170 2 NLLNERTLKGTFFGNYKPR--------SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRG--EGLRCIIRME 70 (71)
Q Consensus 2 ~~~~~~~i~Gs~~g~~~~~--------~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~--~~~kvvi~~~ 70 (71)
+++|++.++|.|++.|... ..+.++.+++..|++.. .-....||+|...|++..... ...|-++.++
T Consensus 277 lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~--~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 277 LIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKA--PNCEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred heeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecc--ccceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 5789999999998766421 23567778999998854 233578999999998876553 2356666553
No 99
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=96.63 E-value=0.0061 Score=36.78 Aligned_cols=64 Identities=22% Similarity=0.432 Sum_probs=45.7
Q ss_pred cccceeEeeeeeccc----ccC---CCHHHHHHHHHcCCCccccceeeee---ehhhHHHHHHHHhcCce-eeEEEe
Q 035170 3 LLNERTLKGTFFGNY----KPR---SDLPSVVEKYMSKELEVEKFITHTV---PFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~----~~~---~~~~~~i~l~~~g~~~~~~~it~~~---~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
+.++.++.++..+.. .+. ..+..+++++.+|.+++. ..+.+ +++++.++++.+.++.. +|+++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~ 340 (341)
T cd08290 266 IFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDALANALKGGGGGKQVLV 340 (341)
T ss_pred hhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 457888888774321 110 247788899999988654 44456 99999999999877654 688875
No 100
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=96.62 E-value=0.0055 Score=37.27 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=36.8
Q ss_pred CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+..+++++.+|.++ ++.++.++++++++||+.+..++. +|++++
T Consensus 306 ~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 351 (352)
T cd08247 306 WIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKVVIK 351 (352)
T ss_pred HHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence 467788899999775 457789999999999999887664 788875
No 101
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=96.55 E-value=0.0091 Score=35.13 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 23 LPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 23 ~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.++++++.++.+++ ..++.|++++++++|+.+..+.. .|+++.|
T Consensus 275 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~ 320 (320)
T cd05286 275 AAELFDAVASGKLKV--EIGKRYPLADAAQAHRDLESRKTTGKLLLIP 320 (320)
T ss_pred HHHHHHHHHCCCCcC--cccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 456778888998765 46789999999999999887654 6888764
No 102
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.40 E-value=0.011 Score=35.37 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
..+.++++++.+|.+++ ++++.+++++++++|+.+..+.. +|+++
T Consensus 285 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv~ 330 (331)
T cd08273 285 QDLTELLDLLAKGKIRP--KIAKRLPLSEVAEAHRLLESGKVVGKIVL 330 (331)
T ss_pred HHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence 45778889999998754 57789999999999998877654 67765
No 103
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=96.38 E-value=0.022 Score=34.06 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=42.9
Q ss_pred ccceeEeeeeeccccc---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKP---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.++.++.|+....... ...+..+.+++..+.+++ +++.++++++++||+.+..++. .|++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~~vvv~ 323 (324)
T cd08288 258 LRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRGRVVVD 323 (324)
T ss_pred ccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccCeEEEe
Confidence 5788888865222211 123555667777887643 3689999999999999887764 688875
No 104
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=96.37 E-value=0.014 Score=34.40 Aligned_cols=62 Identities=13% Similarity=0.401 Sum_probs=43.9
Q ss_pred ccceeEeeeeeccccc------CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 4 LNERTLKGTFFGNYKP------RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~------~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.+++++.|...+.+.. ...+.++++++.++.++ ++.++.|+++++.++|+.+..+.. .|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv 322 (323)
T cd08241 254 LKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLEQAAEALRALADRKATGKVVL 322 (323)
T ss_pred hcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence 4677788876432211 13456788899999774 457889999999999998776553 67765
No 105
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=96.34 E-value=0.01 Score=35.91 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
..+.++++++.+|.++ +++++.|++++++++|+.+.++.. .|+++
T Consensus 304 ~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~ 349 (350)
T cd08248 304 SALDELAKLVEDGKIK--PVIDKVFPFEEVPEAYEKVESGHARGKTVI 349 (350)
T ss_pred HHHHHHHHHHhCCCEe--cccceeecHHHHHHHHHHHhcCCCceEEEe
Confidence 4578899999999875 457889999999999999877653 57775
No 106
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.32 E-value=0.017 Score=34.50 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=44.1
Q ss_pred ccceeEeeeeecccccC-----CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPR-----SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~-----~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.++..+..... ..+.++++++.++.+++ +.++.|++++++++++.+.++.. +|+++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 268 SENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKP--KIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred hcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCC--ceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 45667777653311100 12567888888997654 56789999999999999887654 6888764
No 107
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=96.30 E-value=0.025 Score=33.86 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=39.9
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCcc---ccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEV---EKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~---~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.+++++.|+.... .+.....++++.+.. .+.+ .+.+++.++++++.+||+.+.+++. +|+++++
T Consensus 259 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~ 326 (326)
T cd08289 259 LRGVNLLGIDSVE-CPMELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL 326 (326)
T ss_pred hccceEEEEEeEe-cCchHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence 5678888875211 111223444444432 2221 2356889999999999999888764 6888763
No 108
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=96.23 E-value=0.0097 Score=35.68 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=39.0
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeE
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRC 65 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kv 65 (71)
.++.++.|++.| .+ +++.++++++.... ..++++||++|+++|++.+.++.. .|+
T Consensus 269 ~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 269 SKQISIIGSTGG--TR-KELLELVKIAKDLK----VKVWKTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred hcCcEEEEccCC--CH-HHHHHHHHHHHcCC----ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence 356677777633 22 67889999996443 246789999999999998877553 343
No 109
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=96.20 E-value=0.01 Score=34.88 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEE
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCI 66 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvv 66 (71)
..+.++++++.++.++ +++++.|++++++++|+.+..+.. .|++
T Consensus 264 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv 308 (309)
T cd05289 264 EQLAELAELVEAGKLR--PVVDRVFPLEDAAEAHERLESGHARGKVV 308 (309)
T ss_pred HHHHHHHHHHHCCCEE--EeeccEEcHHHHHHHHHHHHhCCCCCcEe
Confidence 5688899999999764 467899999999999998877653 5665
No 110
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=96.19 E-value=0.026 Score=33.25 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=42.6
Q ss_pred ccceeEeeeeecccccC-------CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 4 LNERTLKGTFFGNYKPR-------SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~-------~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.+++++.|+..+..... ..+.++++++.++.+++ +.++.|++++++++++.+.++.. .|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 323 (323)
T cd05276 254 RKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLEEAAEAHRRMESNEHIGKIVL 323 (323)
T ss_pred HhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 46788888764321000 12456778888898754 57789999999999999877653 57653
No 111
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.13 E-value=0.02 Score=33.94 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=36.1
Q ss_pred CHHHHHHHHHcCCCcccccee-eeeehhhHHHHHHHHhcCc-eeeEEEee
Q 035170 22 DLPSVVEKYMSKELEVEKFIT-HTVPFSEINKAFEYMLRGE-GLRCIIRM 69 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it-~~~~l~~~~~a~~~~~~~~-~~kvvi~~ 69 (71)
.+..+++++.++.++ ++++ +.|++++++++++.+..+. ..|+++++
T Consensus 279 ~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 326 (326)
T cd08272 279 ILREAARLVERGQLR--PLLDPRTFPLEEAAAAHARLESGSARGKIVIDV 326 (326)
T ss_pred HHHHHHHHHHCCCcc--cccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence 467788888899764 4556 8999999999999987755 46888753
No 112
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=96.12 E-value=0.019 Score=34.86 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=35.4
Q ss_pred CHHHHHHHHHcCCCccccceeeeee--hhhHHHHHHHHhcCc-e-eeEEEe
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVP--FSEINKAFEYMLRGE-G-LRCIIR 68 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~--l~~~~~a~~~~~~~~-~-~kvvi~ 68 (71)
.+..+++++.++++++.++. .++ ++++++||+.+..++ . .|++++
T Consensus 290 ~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~kvvv~ 338 (339)
T cd08249 290 FWKYLPELLEEGKLKPHPVR--VVEGGLEGVQEGLDLLRKGKVSGEKLVVR 338 (339)
T ss_pred HHHHHHHHHHcCCccCCCce--ecCCcHHHHHHHHHHHHCCCccceEEEEe
Confidence 46678889999988775333 456 999999999988876 4 798876
No 113
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=95.95 E-value=0.01 Score=36.56 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=46.9
Q ss_pred cccceeEeeeee-cccc--cCCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEeec
Q 035170 3 LLNERTLKGTFF-GNYK--PRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~-g~~~--~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~~~ 70 (71)
+.+.++++|... ..+. +.+-.+++..++++|+++.+. |-.-.|+.+++||.-+-+|+ .+|.++++.
T Consensus 270 ~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~N~GK~vvKv~ 339 (340)
T COG2130 270 MAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TIVDGLENAPEAFIGLLSGKNFGKLVVKVA 339 (340)
T ss_pred HhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--eehhhhhccHHHHHHHhcCCccceEEEEec
Confidence 446788888774 2221 113456777899999998754 33346999999999888876 489999875
No 114
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=95.91 E-value=0.013 Score=42.17 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=48.7
Q ss_pred cccceeEeeeeecccc--cCCCHHHHHHHHHcCCC--ccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNYK--PRSDLPSVVEKYMSKEL--EVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~--~~~~~~~~i~l~~~g~~--~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.++.++.|...-+.. -.++|.++..++++|-= -+.|+-++.|+=+++++||+.|.+|+. +|||+..
T Consensus 1670 fLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1670 FLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKV 1741 (2376)
T ss_pred hhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEE
Confidence 5678888886632211 12567777777766521 136688999999999999999999987 7999975
No 115
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.86 E-value=0.021 Score=33.85 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEE
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCI 66 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvv 66 (71)
..+.++++++.++.++ +++++.|++++++++|+.+.++.. .|++
T Consensus 274 ~~~~~~~~~l~~~~~~--~~~~~~~~~~~i~~a~~~~~~~~~~~~vv 318 (319)
T cd08267 274 EDLEQLAELVEEGKLK--PVIDSVYPLEDAPEAYRRLKSGRARGKVV 318 (319)
T ss_pred HHHHHHHHHHHCCCee--eeeeeEEcHHHHHHHHHHHhcCCCCCcEe
Confidence 5688899999999875 467889999999999999887653 5665
No 116
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=95.84 E-value=0.075 Score=31.82 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=40.9
Q ss_pred ccceeEeeeeecccccCC----CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKPRS----DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~----~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.|+...... .. .+..+.+++..+.+++ + .+.++++++++|++.+..++. +|++++
T Consensus 257 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~ 322 (323)
T TIGR02823 257 LRGVSLLGIDSVYCP-MALREAAWQRLATDLKPRNLES--I-TREITLEELPEALEQILAGQHRGRTVVD 322 (323)
T ss_pred hcceEEEEEeccccC-chhHHHHHHHHHHHhhcCCCcC--c-eeeecHHHHHHHHHHHhCCCccceEEEe
Confidence 567888886532111 11 2445556666776643 4 468999999999999887664 688875
No 117
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=95.81 E-value=0.056 Score=32.49 Aligned_cols=64 Identities=9% Similarity=0.079 Sum_probs=42.6
Q ss_pred ccceeEeeeeecccc--cC-------CCHHHHHHHHHcCCCccccce-eeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 4 LNERTLKGTFFGNYK--PR-------SDLPSVVEKYMSKELEVEKFI-THTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~--~~-------~~~~~~i~l~~~g~~~~~~~i-t~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.+++++.+++.+... .. ..+.++++++.+|.+++.... .+.++++++++|++.+.++.. .|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~ 335 (336)
T cd08252 261 SKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVL 335 (336)
T ss_pred cccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEe
Confidence 467788876633210 00 236678899999988652111 135799999999999887664 67775
No 118
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=95.71 E-value=0.03 Score=32.85 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=34.3
Q ss_pred CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.+.++++++.+|.+++ +.++.|++++++++++.+.++.. +|+++
T Consensus 259 ~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 259 YQAEMVSLVEEGELRP--TVSRIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred HHHHHHHHHHCCCccC--CCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 3666788888998754 56789999999999999887654 57653
No 119
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.64 E-value=0.04 Score=32.74 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 23 LPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 23 ~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.++++++.++.+++ +.++.++++++.++++.+..+.. .|+++++
T Consensus 280 ~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~ 325 (325)
T cd08271 280 GEELLELLAAGKLEP--LVIEVLPFEQLPEALRALKDRHTRGKIVVTI 325 (325)
T ss_pred HHHHHHHHHCCCeee--ccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence 466788898998754 45688999999999999887654 6888753
No 120
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=95.43 E-value=0.057 Score=31.85 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=41.2
Q ss_pred ccceeEeeeeeccccc---CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 4 LNERTLKGTFFGNYKP---RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~---~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
.++.++.+.......+ ...+..+.+++.++.+++ ..++.+++++++++++.+.++.. +|+++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~ 325 (325)
T cd08253 258 AKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRP--VIAREYPLEEAAAAHEAVESGGAIGKVVLDP 325 (325)
T ss_pred hcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccC--ccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence 3455666654222111 012445556777887654 56789999999999999887654 6888753
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=95.38 E-value=0.047 Score=31.63 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=33.4
Q ss_pred CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEE
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCI 66 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvv 66 (71)
.+..+++++.++.+++ ...+.|++++++++++.+..+.. .|++
T Consensus 244 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv 287 (288)
T smart00829 244 LLAEVLELFAEGVLRP--LPVTVFPISDVEDAFRYMQQGKHIGKVV 287 (288)
T ss_pred HHHHHHHHHHCCCccC--cCceEEcHHHHHHHHHHHhcCCCcceEe
Confidence 3567888888998765 34578999999999999887654 5665
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=95.07 E-value=0.055 Score=31.31 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred CHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEE
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCII 67 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi 67 (71)
.+..+++++.++.++ +++++.+++++++++|+.+.++.. .|+++
T Consensus 249 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 249 LLREVLELLEAGVLK--PLPPTVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred HHHHHHHHHHCCCcc--cCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence 467788899999774 567888999999999999887654 56653
No 123
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=95.00 E-value=0.067 Score=32.19 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=34.1
Q ss_pred CHHHHHHHHHcCCCccccceeeeee---hhhHHHHHHHHhcCce-eeEEEe
Q 035170 22 DLPSVVEKYMSKELEVEKFITHTVP---FSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~it~~~~---l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+.++++++.+|.+++ .+++.++ ++++++|++.+.+++. +|+++.
T Consensus 286 ~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 286 LLNRVARLVDAGKIRT--TLAETFGTINAANLKRAHALIESGKARGKIVLE 334 (336)
T ss_pred HHHHHHHHHHCCCeec--cchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence 3678889999998754 4555554 7899999999888764 687764
No 124
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=94.90 E-value=0.099 Score=30.90 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=43.3
Q ss_pred ccceeEeeeeeccccc-------CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEe
Q 035170 4 LNERTLKGTFFGNYKP-------RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIR 68 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~-------~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~ 68 (71)
.+++++.|+....... ...+.++++++.++.++ ++.++.+++++++++++.+.++.. .|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 324 (325)
T TIGR02824 254 AKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVR--PVIDKVFPLEDAAQAHALMESGDHIGKIVLT 324 (325)
T ss_pred hcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCccc--CccccEEeHHHHHHHHHHHHhCCCcceEEEe
Confidence 5678888876332110 01235567788888765 357789999999999999887654 688765
No 125
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.39 E-value=0.16 Score=30.02 Aligned_cols=64 Identities=19% Similarity=0.386 Sum_probs=40.3
Q ss_pred cccceeEeeeeeccc--ccCCC----HHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCce-eeEEEee
Q 035170 3 LLNERTLKGTFFGNY--KPRSD----LPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEG-LRCIIRM 69 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~--~~~~~----~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~-~kvvi~~ 69 (71)
+.+++++.+...+.. .+ .. +..+.+++.++.+++ +.++.|+++++.++++.+.++.. .|+++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~ 328 (328)
T cd08268 258 LKKSLTFRGYSLDEITLDP-EARRRAIAFILDGLASGALKP--VVDRVFPFDDIVEAHRYLESGQQIGKIVVTP 328 (328)
T ss_pred hhcCCEEEEEecccccCCH-HHHHHHHHHHHHHHHCCCCcC--CcccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 345666666542211 01 22 333445566776654 56788999999999999887654 6888753
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=91.39 E-value=0.4 Score=29.87 Aligned_cols=64 Identities=8% Similarity=0.137 Sum_probs=43.3
Q ss_pred cccceeEeeeeecccccCCCH----HHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCc-eeeEEEeec
Q 035170 3 LLNERTLKGTFFGNYKPRSDL----PSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGE-GLRCIIRME 70 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~----~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~-~~kvvi~~~ 70 (71)
+.|++++.|...-.+ .+.+ +.+..++++|+|+...-|. -.|+..+.||-.+-+|+ .+|.++.+.
T Consensus 273 i~Kr~~iqgflv~d~--~d~~~k~ld~l~~~ikegKI~y~edi~--~Glen~P~A~vglf~GkNvGKqiv~va 341 (343)
T KOG1196|consen 273 IYKRIRIQGFLVSDY--LDKYPKFLDFLLPYIKEGKITYVEDIA--DGLENGPSALVGLFHGKNVGKQLVKVA 341 (343)
T ss_pred eeeeEEeeeEEeech--hhhhHHHHHHHHHHHhcCceEEehhHH--HHHhccHHHHHHHhccCcccceEEEee
Confidence 568888988552222 2344 4445677899987643332 24899999999888876 479888764
No 127
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.69 E-value=0.15 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=19.6
Q ss_pred cccceeEeeeeecccccCCCHHHHHHHHH
Q 035170 3 LLNERTLKGTFFGNYKPRSDLPSVVEKYM 31 (71)
Q Consensus 3 ~~~~~~i~Gs~~g~~~~~~~~~~~i~l~~ 31 (71)
+.++++++|++.+ ++ +++++++++++
T Consensus 104 ~~~~~~i~g~~~~--~~-~~~~~~~~~la 129 (130)
T PF00107_consen 104 MFKEITIRGSWGG--SP-EDFQEALQLLA 129 (130)
T ss_dssp HHTTEEEEEESSG--GH-HHHHHHHHHHH
T ss_pred HhCCcEEEEEccC--CH-HHHHHHHHHhc
Confidence 4678999999844 33 77888888876
No 128
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=90.67 E-value=0.27 Score=29.57 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=19.2
Q ss_pred ccceeEeeeeecccccCCCHHHHHHHHHcC
Q 035170 4 LNERTLKGTFFGNYKPRSDLPSVVEKYMSK 33 (71)
Q Consensus 4 ~~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g 33 (71)
+++++++|+++|+ +.+++++++++++|
T Consensus 280 ~~~~~i~g~~~~~---~~~~~~~~~~~~~~ 306 (306)
T cd08258 280 QKELSVIGSRSST---PASWETALRLLASG 306 (306)
T ss_pred hcCcEEEEEecCc---hHhHHHHHHHHhcC
Confidence 4778888888543 25688888887765
No 129
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=85.27 E-value=1.3 Score=22.93 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=20.2
Q ss_pred eeehhhHHHHHHHHhcCceeeEEEee
Q 035170 44 TVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 44 ~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
+||-+|+.+++..+.+....++++.+
T Consensus 7 HYp~~d~~~~l~~La~~t~~~~ifTf 32 (97)
T PF07109_consen 7 HYPAEDAAQMLAHLASRTRGSLIFTF 32 (97)
T ss_pred ccCHHHHHHHHHHHHHhccCcEEEEE
Confidence 68888888888888776666777765
No 130
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=79.68 E-value=3.4 Score=17.93 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHcCCCccccce
Q 035170 21 SDLPSVVEKYMSKELEVEKFI 41 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~i 41 (71)
-+..++.+++++|.++.+.+|
T Consensus 14 ~s~~el~~l~~~g~i~~~tlv 34 (45)
T PF14237_consen 14 FSLEELRQLISSGEIDPDTLV 34 (45)
T ss_pred cCHHHHHHHHHcCCCCCCCeE
Confidence 568999999999999988776
No 131
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.28 E-value=8.1 Score=25.72 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=27.9
Q ss_pred cceeEeeeeecccccCCCHH-HHHHHHHcCCCcccccee
Q 035170 5 NERTLKGTFFGNYKPRSDLP-SVVEKYMSKELEVEKFIT 42 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~-~~i~l~~~g~~~~~~~it 42 (71)
+++++.|++ ++. ..++ ++.+++.++.+++.++++
T Consensus 305 ~gVti~Gv~--n~P--~~~p~~As~lla~~~i~l~~lIt 339 (509)
T PRK09424 305 NGVTIIGYT--DLP--SRLPTQSSQLYGTNLVNLLKLLC 339 (509)
T ss_pred CCEEEEEeC--CCc--hhHHHHHHHHHHhCCccHHHHhc
Confidence 789999987 443 4566 599999999999988887
No 132
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=58.52 E-value=4 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=26.5
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccc
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKF 40 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~ 40 (71)
++..|+|-. .++|+++..-+...+++..+|..|.
T Consensus 104 ~d~iIrGYI--~ATPKRDhkfL~k~L~~~~ID~~pY 137 (141)
T PF11084_consen 104 RDLIIRGYI--LATPKRDHKFLRKKLKEKNIDYTPY 137 (141)
T ss_pred HHHHHhhhh--hcCCchhHHHHHHHHHHcCCCchhh
Confidence 456677766 4567899999999999999987653
No 133
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=57.18 E-value=10 Score=18.86 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhc
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLR 59 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~ 59 (71)
+-+...-.++.++++.++.+.-..--|.+..+|++....
T Consensus 32 QLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~ 70 (82)
T PF11123_consen 32 QLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKK 70 (82)
T ss_pred HHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHH
Confidence 445556678889999888777666667778888776654
No 134
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=54.09 E-value=15 Score=17.33 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=7.0
Q ss_pred eehhhHHHHHHHHhcCc
Q 035170 45 VPFSEINKAFEYMLRGE 61 (71)
Q Consensus 45 ~~l~~~~~a~~~~~~~~ 61 (71)
.|++.+-++++.+..|+
T Consensus 11 ~p~~~il~~~~~L~~Ge 27 (69)
T PF10006_consen 11 EPHERILEALDELPPGE 27 (69)
T ss_pred ChHHHHHHHHHcCCCCC
Confidence 34444444444444343
No 135
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=46.61 E-value=19 Score=17.89 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=22.8
Q ss_pred CHHHHHHHHHcCCC-cccccee-eeeehhhHHHHHHHHhc
Q 035170 22 DLPSVVEKYMSKEL-EVEKFIT-HTVPFSEINKAFEYMLR 59 (71)
Q Consensus 22 ~~~~~i~l~~~g~~-~~~~~it-~~~~l~~~~~a~~~~~~ 59 (71)
-|..++++++.|+- .+..+.+ --.|.+++..+++.+.+
T Consensus 25 L~r~LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p~ 64 (77)
T PF12324_consen 25 LLRPLLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMPD 64 (77)
T ss_dssp HHHHHHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-TT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 36778889998852 2222332 23688999999988765
No 136
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=42.12 E-value=66 Score=19.08 Aligned_cols=37 Identities=3% Similarity=-0.064 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHc-CCCccccceeeeeehhhHHHHHHHH
Q 035170 21 SDLPSVVEKYMS-KELEVEKFITHTVPFSEINKAFEYM 57 (71)
Q Consensus 21 ~~~~~~i~l~~~-g~~~~~~~it~~~~l~~~~~a~~~~ 57 (71)
.+..++.+++.+ |-.++.......++++++.++++.+
T Consensus 209 ~~~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~ 246 (272)
T PRK11873 209 LQEEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDW 246 (272)
T ss_pred CCHHHHHHHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence 345677777776 4334444455678999999999888
No 137
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=41.10 E-value=36 Score=17.78 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHH
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKA 53 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a 53 (71)
.++.++.+.+..|+ -|+-.+.|.++...
T Consensus 4 ~~~~~i~~AL~~Gk-----~V~v~iDls~Ct~~ 31 (100)
T PF06903_consen 4 NTYAAILQALDAGK-----NVTVVIDLSQCTPE 31 (100)
T ss_pred ccHHHHHHHHHcCC-----eEEEEEEHHHCccC
Confidence 35667777777774 13445666666544
No 138
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=41.09 E-value=39 Score=19.95 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHH
Q 035170 20 RSDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEY 56 (71)
Q Consensus 20 ~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~ 56 (71)
+.+.+.+++.++.|.+| ++++-|+-.++.+|.+.
T Consensus 85 hgDIpmaV~AmK~GAvD---FLeKP~~~q~Lldav~~ 118 (202)
T COG4566 85 HGDIPMAVQAMKAGAVD---FLEKPFSEQDLLDAVER 118 (202)
T ss_pred CCChHHHHHHHHcchhh---HHhCCCchHHHHHHHHH
Confidence 37899999999999875 56666666666665554
No 139
>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process; PDB: 2BTW_A 2BU3_B.
Probab=40.63 E-value=78 Score=18.72 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhcCceeeEEEee
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLRGEGLRCIIRM 69 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~~~~~kvvi~~ 69 (71)
-++.++..+++...++.+........++++-+.+....+...-.+++.+
T Consensus 97 iTL~e~~~la~~~g~~~~~~~~~~~s~~~FR~~l~~~~~~~~~~livnf 145 (212)
T PF05023_consen 97 ITLDEFACLAKCNGLRVEVYRADDSSLDEFRQHLKEALSDPNDFLIVNF 145 (212)
T ss_dssp --HHHHHHHHHTTT-EEEEEEGGGS-HHHHHHHHHHHCTSTTEEEEEEE
T ss_pred CCHHHHHHHHHhcCCceEEEeCCcCCHHHHHHHHHHHhCCCCCEEEEEC
Confidence 3577888888888776655544566677777777665443334566655
No 140
>PF03509 Connexin50: Gap junction alpha-8 protein (Cx50); InterPro: IPR002266 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. Gap junction alpha-8 protein (also called connexin50, Cx50, or lens fibre protein MP70) is a connexin of ~431 amino acid residues. The chicken isoform is shorter (399 residues) and is hence known as Cx45.6. Cx50 and Cx46 are the two gap junction proteins normally found in lens fibre cells of the eye. Evidence from both genetically-engineered mice, and from the identification of mutations in the human Cx50-encoding gene, highlight the importance of this connexin in maintaining lens transparency. Deletion of mice Cx50 produces a viable phenotype, but these animals start to develop cataracts (of the zonular pulverant type) at about one week old. They also have abnormally small eyes and lenses. Similarly, mutations in the human gene encoding Cx50 have been associated with the occurrence of congenital cataracts. Affected individuals develop cataracts (with zonular pulverent opacities), and analysis shows they have a single point mutation in the Cx50 coding region, resulting in a non-conservative substitution in the second putative TM domain of a serine residue for a proline.; GO: 0007154 cell communication, 0005922 connexon complex
Probab=31.81 E-value=19 Score=17.23 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=9.7
Q ss_pred ceeeeeehhhHH
Q 035170 40 FITHTVPFSEIN 51 (71)
Q Consensus 40 ~it~~~~l~~~~ 51 (71)
.++|-|||.++.
T Consensus 15 ~vsh~~PLtEVG 26 (66)
T PF03509_consen 15 PVSHYFPLTEVG 26 (66)
T ss_pred chheecchhhhc
Confidence 578999998875
No 141
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=31.47 E-value=81 Score=16.18 Aligned_cols=24 Identities=4% Similarity=0.256 Sum_probs=18.1
Q ss_pred eeehhhHHHHHHHHhcCceeeEEE
Q 035170 44 TVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 44 ~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
.-..|+++..++.+.+-...|.++
T Consensus 67 A~~~EQ~e~ly~eL~~~~~VkmVL 90 (90)
T COG2921 67 ATNIEQVEALYRELRKHEIVKMVL 90 (90)
T ss_pred ECCHHHHHHHHHHHhhCCceEEeC
Confidence 346888999999888776677664
No 142
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=30.17 E-value=1.2e+02 Score=17.61 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHcCCCccccceeeeee----------------------hhhHHHHHHHHhcCceeeEEEe
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVP----------------------FSEINKAFEYMLRGEGLRCIIR 68 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~----------------------l~~~~~a~~~~~~~~~~kvvi~ 68 (71)
.-..++.+++++..+++..+-|+.++ ++++.++|+.+.+.-...+.+.
T Consensus 107 GIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~eL~vd~~l~ 176 (190)
T PRK11589 107 HLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCTELNAQGSIN 176 (190)
T ss_pred CHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHHHhCceEEEE
Confidence 55788889999999998888887766 5566677777665433333333
No 143
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.94 E-value=55 Score=14.95 Aligned_cols=6 Identities=0% Similarity=-0.158 Sum_probs=2.2
Q ss_pred HHHHHH
Q 035170 26 VVEKYM 31 (71)
Q Consensus 26 ~i~l~~ 31 (71)
+.+.+.
T Consensus 16 ~~~~l~ 21 (69)
T cd00291 16 TKKALE 21 (69)
T ss_pred HHHHHh
Confidence 333333
No 144
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=29.63 E-value=68 Score=15.69 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=12.8
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCC
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKE 34 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~ 34 (71)
+.+.++|..+ ..|--....+++-+..|.
T Consensus 6 ~~LD~rG~~C--P~Pv~~~kk~l~~m~~Ge 33 (78)
T COG0425 6 KVLDLRGLRC--PGPVVETKKALAKLKPGE 33 (78)
T ss_pred eEEeccCCcC--CccHHHHHHHHHcCCCCC
Confidence 3456666541 111123345555555563
No 145
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=29.30 E-value=15 Score=23.66 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHH
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINK 52 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~ 52 (71)
.++.++.++-+.|++++..+...+|.|+.+..
T Consensus 364 keLnrLq~~g~~~qls~~D~t~GTftLSNIG~ 395 (474)
T KOG0558|consen 364 KELNRLQELGANGQLSPEDLTGGTFTLSNIGA 395 (474)
T ss_pred HHHHHHHHhhhcCCcChhhccCceEEeeeccc
Confidence 45677778888999999999999999988753
No 146
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=28.20 E-value=42 Score=19.18 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=4.2
Q ss_pred ehhhHHHHHH
Q 035170 46 PFSEINKAFE 55 (71)
Q Consensus 46 ~l~~~~~a~~ 55 (71)
..++..++++
T Consensus 260 ~~~~~~~~~~ 269 (271)
T cd05188 260 TREDFEEALD 269 (271)
T ss_pred CHHHHHHHHh
Confidence 3344444443
No 147
>PF14493 HTH_40: Helix-turn-helix domain
Probab=27.74 E-value=64 Score=15.96 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=22.3
Q ss_pred HHHHHHHHHcCC-CccccceeeeeehhhHHHHHHH
Q 035170 23 LPSVVEKYMSKE-LEVEKFITHTVPFSEINKAFEY 56 (71)
Q Consensus 23 ~~~~i~l~~~g~-~~~~~~it~~~~l~~~~~a~~~ 56 (71)
...+++++..|. ++++.+++.. .++.+.++++.
T Consensus 31 ~~HL~~~~~~g~~~~~~~~l~~e-~~~~I~~~~~~ 64 (91)
T PF14493_consen 31 YGHLAELIESGEPLDIEELLSEE-EIKQIEDAIEK 64 (91)
T ss_pred HHHHHHHHHhCCCCCHHHhCCHH-HHHHHHHHHHH
Confidence 456778888888 8887776544 35556666654
No 148
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.25 E-value=70 Score=14.10 Aligned_cols=37 Identities=11% Similarity=-0.057 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHcCCCccccce--------eeeeehhhHHHHHHHH
Q 035170 21 SDLPSVVEKYMSKELEVEKFI--------THTVPFSEINKAFEYM 57 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~i--------t~~~~l~~~~~a~~~~ 57 (71)
.-..+.++.+++..+++.-+. +=..+-++.+++.+.+
T Consensus 16 ~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~L 60 (66)
T cd04924 16 GVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAV 60 (66)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHH
Confidence 456788888888877774221 2244556666665544
No 149
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=27.20 E-value=80 Score=15.20 Aligned_cols=18 Identities=33% Similarity=0.700 Sum_probs=13.7
Q ss_pred eeeeeehhhHHHHHHHHh
Q 035170 41 ITHTVPFSEINKAFEYML 58 (71)
Q Consensus 41 it~~~~l~~~~~a~~~~~ 58 (71)
++.+|.+.++.++++.+.
T Consensus 11 l~r~f~f~~f~~a~~f~~ 28 (76)
T cd00914 11 IHKSFKFKDFNEAFGFMT 28 (76)
T ss_pred EEEEEEeCCHHHHHHHHH
Confidence 678899888888876543
No 150
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=26.97 E-value=84 Score=15.00 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=14.2
Q ss_pred ceeeeeehhhHHHHHHHHh
Q 035170 40 FITHTVPFSEINKAFEYML 58 (71)
Q Consensus 40 ~it~~~~l~~~~~a~~~~~ 58 (71)
-+.++|.+.+..++++.+.
T Consensus 9 ~l~r~f~f~~f~~a~~f~~ 27 (75)
T cd00488 9 ALERTFKFKDFKEAIAFVN 27 (75)
T ss_pred cEEEEEEcCCHHHHHHHHH
Confidence 3678999999888876543
No 151
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.44 E-value=95 Score=15.38 Aligned_cols=29 Identities=14% Similarity=0.470 Sum_probs=18.1
Q ss_pred HHHHHHHcCCCccccceeeeeehhhHH--HHHH
Q 035170 25 SVVEKYMSKELEVEKFITHTVPFSEIN--KAFE 55 (71)
Q Consensus 25 ~~i~l~~~g~~~~~~~it~~~~l~~~~--~a~~ 55 (71)
..++++.+|++++ +|....|.++.. +++.
T Consensus 51 ~i~~~i~~~~Idl--VIn~~~~~~~~~~~dg~~ 81 (95)
T PF02142_consen 51 QIMDLIKNGKIDL--VINTPYPFSDQEHTDGYK 81 (95)
T ss_dssp HHHHHHHTTSEEE--EEEE--THHHHHTHHHHH
T ss_pred HHHHHHHcCCeEE--EEEeCCCCcccccCCcHH
Confidence 4888888888764 665566666655 4544
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.56 E-value=1.2e+02 Score=16.11 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=28.1
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCccc--cceeeeeehhhHHHHHHHH
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVE--KFITHTVPFSEINKAFEYM 57 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~--~~it~~~~l~~~~~a~~~~ 57 (71)
.++|.|+- ++ .....+.+++.++.+.+. .+.....+-+++.+-++..
T Consensus 2 ~itiy~~p--~C---~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 2 MITIYGNP--NC---STCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred eEEEEeCC--CC---hHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 35666654 33 568889999999888763 1223334455555554443
No 153
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=25.10 E-value=1.3e+02 Score=20.23 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=29.4
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHH
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINK 52 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~ 52 (71)
.++|.|.+...+....++.++-++++.=.+++..++..--+++|+.+
T Consensus 165 ~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~ 211 (513)
T CHL00076 165 SVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKN 211 (513)
T ss_pred cEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHh
Confidence 47888866322222378888889998877777655544344555544
No 154
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.06 E-value=1.2e+02 Score=16.88 Aligned_cols=31 Identities=6% Similarity=0.272 Sum_probs=19.8
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCcc
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEV 37 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~ 37 (71)
++.|.|++.|..+ ..+.+++++.+++..-++
T Consensus 74 ~l~ivg~~~g~f~-~~~~~~i~~~I~~~~pdi 104 (172)
T PF03808_consen 74 GLRIVGYHHGYFD-EEEEEAIINRINASGPDI 104 (172)
T ss_pred CeEEEEecCCCCC-hhhHHHHHHHHHHcCCCE
Confidence 5677777755333 356777777877765443
No 155
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=23.73 E-value=71 Score=15.59 Aligned_cols=9 Identities=11% Similarity=0.106 Sum_probs=3.5
Q ss_pred HHHHHHHcC
Q 035170 25 SVVEKYMSK 33 (71)
Q Consensus 25 ~~i~l~~~g 33 (71)
++++-+..|
T Consensus 28 k~l~~l~~G 36 (81)
T PRK00299 28 KTVRNMQPG 36 (81)
T ss_pred HHHHcCCCC
Confidence 333333334
No 156
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis]
Probab=23.03 E-value=56 Score=19.94 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=34.7
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCcc-cccee--eeeehhhHHHHHHHHhcC
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEV-EKFIT--HTVPFSEINKAFEYMLRG 60 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~-~~~it--~~~~l~~~~~a~~~~~~~ 60 (71)
|..=.|+..| .+++.+|..+.++...=++++ .++.. .+.+-+++.+||.....+
T Consensus 139 eW~KHGtC~g-~s~~~YFa~~r~l~~~l~~p~~~~~~a~~~~ls~~ei~~AF~~~n~~ 195 (249)
T COG3719 139 EWRKHGTCSG-LSQEAYFATTRRLFEELKLPPVRKLLADGKTLSRDEIEQAFDKANGG 195 (249)
T ss_pred hHHhcCccCC-CCHHHHHHHHHHHHHHhcCCccccccccccccCHHHHHHHHHHhCCC
Confidence 3334566544 344577888888888766542 33444 377788899999976553
No 157
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=22.82 E-value=1.2e+02 Score=17.45 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=25.4
Q ss_pred CHHHHHHHHHcC---CCccccceeeeeehhh-----HHHHHHHHhcCc
Q 035170 22 DLPSVVEKYMSK---ELEVEKFITHTVPFSE-----INKAFEYMLRGE 61 (71)
Q Consensus 22 ~~~~~i~l~~~g---~~~~~~~it~~~~l~~-----~~~a~~~~~~~~ 61 (71)
...++++++.+. .+++.-++++-|..++ ..+++..+.+..
T Consensus 92 Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aG 139 (188)
T PF08210_consen 92 CAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAG 139 (188)
T ss_dssp HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcC
Confidence 567788888877 6666656666665443 458888776643
No 158
>PHA02844 putative transmembrane protein; Provisional
Probab=22.30 E-value=30 Score=17.09 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=14.5
Q ss_pred EeeeeecccccCCCHHHHHHHHHc
Q 035170 9 LKGTFFGNYKPRSDLPSVVEKYMS 32 (71)
Q Consensus 9 i~Gs~~g~~~~~~~~~~~i~l~~~ 32 (71)
+.|+++.+. .++++..++-+.+
T Consensus 8 iFGVFmsS~--DdDFnnFI~vVks 29 (75)
T PHA02844 8 IFGVFLSSE--NEDFNNFIDVVKS 29 (75)
T ss_pred HHhhhcCCc--hHHHHHHHHHHHH
Confidence 467775443 4788888876653
No 159
>PHA02819 hypothetical protein; Provisional
Probab=22.22 E-value=26 Score=17.11 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=14.8
Q ss_pred EeeeeecccccCCCHHHHHHHHHc
Q 035170 9 LKGTFFGNYKPRSDLPSVVEKYMS 32 (71)
Q Consensus 9 i~Gs~~g~~~~~~~~~~~i~l~~~ 32 (71)
+.|+++.+. .+++...++-+++
T Consensus 8 iFGvFmsS~--DdDFnnFI~VVks 29 (71)
T PHA02819 8 IFGVFMSSS--DDDFNNFINVVKS 29 (71)
T ss_pred HHHhhhCCc--hhHHHHHHHHHHH
Confidence 457775433 4788888877664
No 160
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=22.21 E-value=2.1e+02 Score=17.75 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=22.5
Q ss_pred ceeeeeehhhHHHHHHHHhc---CceeeEEEee
Q 035170 40 FITHTVPFSEINKAFEYMLR---GEGLRCIIRM 69 (71)
Q Consensus 40 ~it~~~~l~~~~~a~~~~~~---~~~~kvvi~~ 69 (71)
++++.++++.--++|+.+.+ +-+-|+++.|
T Consensus 122 il~~~~~~~~h~~~F~~la~~L~g~t~~~viSF 154 (266)
T PF08902_consen 122 ILTDKYTVDYHLEAFERLAEALAGYTDRCVISF 154 (266)
T ss_pred eECCCCCHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 55788999888888887655 3345888876
No 161
>PRK10095 ribonuclease I; Provisional
Probab=22.19 E-value=96 Score=19.10 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=30.4
Q ss_pred eeeeecccccCCCHHHHHHHHHcCCCc-----cccceeeeeehhhHHHHHHHHhc
Q 035170 10 KGTFFGNYKPRSDLPSVVEKYMSKELE-----VEKFITHTVPFSEINKAFEYMLR 59 (71)
Q Consensus 10 ~Gs~~g~~~~~~~~~~~i~l~~~g~~~-----~~~~it~~~~l~~~~~a~~~~~~ 59 (71)
.|+..+ .+...+|..++++..+=.+. +..-....++.+++.+||.....
T Consensus 156 HGtC~~-~~~~~YF~~al~L~~kvn~s~~~~~L~~~~Gk~~s~~~I~~Ai~~a~G 209 (268)
T PRK10095 156 HGACFG-FDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWG 209 (268)
T ss_pred CCeecC-CCHHHHHHHHHHHHHHhchhhhhhhhhcCCCcEEcHHHHHHHHHHHhC
Confidence 454433 33346778888887643221 11124578999999999997653
No 162
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=22.18 E-value=1.2e+02 Score=15.08 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHh
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYML 58 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~ 58 (71)
..+.+..+++.-|++.- -.|.=+++.+||+..+
T Consensus 59 kalqeiarlvelgrfty-----vhyrn~eie~afeavk 91 (95)
T PF13065_consen 59 KALQEIARLVELGRFTY-----VHYRNEEIEKAFEAVK 91 (95)
T ss_pred HHHHHHHHHHHhcceeE-----EEeccHHHHHHHHHHh
Confidence 34566667777787632 3677889999999764
No 163
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.18 E-value=1e+02 Score=19.98 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=17.4
Q ss_pred eeeeehhhHHHHHHHHhcCceeeEEE
Q 035170 42 THTVPFSEINKAFEYMLRGEGLRCII 67 (71)
Q Consensus 42 t~~~~l~~~~~a~~~~~~~~~~kvvi 67 (71)
...||++++-+|.......+.-|+.+
T Consensus 249 n~~ypl~eLl~a~~~y~~~t~rrit~ 274 (371)
T PRK14461 249 NRRYPIADLMAATRDYIAKTRRRVSF 274 (371)
T ss_pred ccCCCHHHHHHHHHHHHHhhCCEEEE
Confidence 46889999988888765433334444
No 164
>PHA02650 hypothetical protein; Provisional
Probab=21.94 E-value=30 Score=17.30 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=14.6
Q ss_pred EeeeeecccccCCCHHHHHHHHHc
Q 035170 9 LKGTFFGNYKPRSDLPSVVEKYMS 32 (71)
Q Consensus 9 i~Gs~~g~~~~~~~~~~~i~l~~~ 32 (71)
+.|+++.+. .+++...++-+.+
T Consensus 8 iFGVFmsS~--DdDFnnFI~VVkS 29 (81)
T PHA02650 8 IFGVFMSST--DDDFNNFIDVVKS 29 (81)
T ss_pred HHhhhcCCc--HHHHHHHHHHHHH
Confidence 467775443 4788888876653
No 165
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.94 E-value=1.8e+02 Score=16.96 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCcccccee-eeeehhhHHHHHHHHh
Q 035170 24 PSVVEKYMSKELEVEKFIT-HTVPFSEINKAFEYML 58 (71)
Q Consensus 24 ~~~i~l~~~g~~~~~~~it-~~~~l~~~~~a~~~~~ 58 (71)
...++-+.+|++++...+. |.++.+++.+++..+-
T Consensus 82 ~~v~~kLrrG~~~~e~~LDLHG~tq~eAr~~L~~Fi 117 (184)
T COG2840 82 KNVLKKLRRGRYPPEARLDLHGLTQEEARQELGAFI 117 (184)
T ss_pred hHHHHHHhcCCCCcceeeeccCCCHHHHHHHHHHHH
Confidence 4567899999999887776 8899999998887643
No 166
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=21.86 E-value=58 Score=17.43 Aligned_cols=12 Identities=0% Similarity=0.019 Sum_probs=6.1
Q ss_pred hhHHHHHHHHhc
Q 035170 48 SEINKAFEYMLR 59 (71)
Q Consensus 48 ~~~~~a~~~~~~ 59 (71)
.++.+++..+..
T Consensus 47 ~QalevIk~L~~ 58 (125)
T PF09377_consen 47 QQALEVIKKLKE 58 (125)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 167
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=21.76 E-value=2.3e+02 Score=18.14 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhc
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLR 59 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~ 59 (71)
.-++.++.+-.+|.+.+. +-.+.++.+.+.++.+.+
T Consensus 12 ~~~~~a~~~~~~g~~~~~---~yvIDl~~I~~N~~~l~~ 47 (382)
T cd06811 12 ALIEAALTLHQSGAIPPD---TYVIDLDQIEENARLLAE 47 (382)
T ss_pred HHHHHHHHHHHcCCCCCC---EEEecHHHHHHHHHHHHH
Confidence 456788899999999875 346788888887777654
No 168
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.73 E-value=1.7e+02 Score=17.63 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=21.0
Q ss_pred CHHHHHHHHHcCCCccccce-eeeeehhhHHHHHHHHhc
Q 035170 22 DLPSVVEKYMSKELEVEKFI-THTVPFSEINKAFEYMLR 59 (71)
Q Consensus 22 ~~~~~i~l~~~g~~~~~~~i-t~~~~l~~~~~a~~~~~~ 59 (71)
....+++.+++-..++ ++ |-.-.++|+.+|++.+..
T Consensus 101 ~n~~lL~~~A~tgkPv--IlSTG~stl~EI~~Av~~~~~ 137 (241)
T PF03102_consen 101 TNLPLLEYIAKTGKPV--ILSTGMSTLEEIERAVEVLRE 137 (241)
T ss_dssp T-HHHHHHHHTT-S-E--EEE-TT--HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCcE--EEECCCCCHHHHHHHHHHHHh
Confidence 3455777777755443 33 345679999999998843
No 169
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=21.69 E-value=2.2e+02 Score=17.94 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHhc
Q 035170 21 SDLPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYMLR 59 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~~ 59 (71)
...+.+++++..| +++--+||+..|..|--+..+.++.
T Consensus 77 ~aadai~EAida~-i~liv~ITEgIP~~D~~~~~~~a~~ 114 (293)
T COG0074 77 FAADAILEAIDAG-IKLVVIITEGIPVLDMLELKRYARE 114 (293)
T ss_pred HHHHHHHHHHhCC-CcEEEEEeCCCCHHHHHHHHHHHHh
Confidence 4456777888887 5555678888998888888887765
No 170
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=21.47 E-value=1.2e+02 Score=16.43 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCccccceeeeeehhhHHHHHH
Q 035170 23 LPSVVEKYMSKELEVEKFITHTVPFSEINKAFE 55 (71)
Q Consensus 23 ~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~ 55 (71)
+...++.+++..+++ ++|.|.+-+++|.
T Consensus 29 ~a~~~~~Lk~~gv~v-----~RyNL~~~P~aF~ 56 (123)
T PF06953_consen 29 FAADLDWLKEQGVEV-----ERYNLAQNPQAFV 56 (123)
T ss_dssp HHHHHHHHHHTT-EE-----EEEETTT-TTHHH
T ss_pred HHHHHHHHHhCCceE-----EEEccccCHHHHH
Confidence 566667777765543 5888888777765
No 171
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.37 E-value=97 Score=13.64 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=27.4
Q ss_pred eeEeeeeecccccCCCHHHHHHHHHcCCCccccce--------eeeeehhhHHHHHHHH
Q 035170 7 RTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFI--------THTVPFSEINKAFEYM 57 (71)
Q Consensus 7 ~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~i--------t~~~~l~~~~~a~~~~ 57 (71)
+++.|..... .+ ....+.++.+.+..+++.-+. +=.++-++..++.+.+
T Consensus 4 isivg~~~~~-~~-~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~l 60 (66)
T cd04916 4 IMVVGEGMKN-TV-GVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAI 60 (66)
T ss_pred EEEEcCCCCC-Cc-cHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHH
Confidence 4556654211 12 456778888888777764221 2245556666665544
No 172
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.69 E-value=1.4e+02 Score=19.01 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=27.6
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHH
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINK 52 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~ 52 (71)
+.+.|.|.+ .. + .++.++-++++.=.+++...++.--+++|+.+
T Consensus 161 ~~VNiig~~--~~-~-~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~ 204 (406)
T cd01967 161 YDVNIIGEY--NI-G-GDAWVIKPLLEELGIRVNATFTGDGTVDELRR 204 (406)
T ss_pred CeEEEEecc--cc-c-hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh
Confidence 347788876 22 2 57788888888766766555543345555554
No 173
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=20.65 E-value=1.3e+02 Score=15.17 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCccccceeeeeehhhHHHHHHHHh
Q 035170 23 LPSVVEKYMSKELEVEKFITHTVPFSEINKAFEYML 58 (71)
Q Consensus 23 ~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a~~~~~ 58 (71)
....+.-+...++.-..-+...|.++++.+|++.+.
T Consensus 10 i~~~L~~l~~W~~~~~~~l~r~f~f~~f~~a~~f~~ 45 (95)
T PF01329_consen 10 IAEALAELPGWKLDGGGRLERTFKFKDFAEAVEFVN 45 (95)
T ss_dssp HHHHHHTSTTSEEETSSEEEEEEE-SSHHHHHHHHH
T ss_pred HHHhhhcCcCCEECCCCcEEEEEEeCCHHHHHHHHH
Confidence 333444333444332256788999999988876543
No 174
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=20.60 E-value=1.4e+02 Score=16.64 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=14.7
Q ss_pred eeehhhHHHHHHHHhcCceeeEE
Q 035170 44 TVPFSEINKAFEYMLRGEGLRCI 66 (71)
Q Consensus 44 ~~~l~~~~~a~~~~~~~~~~kvv 66 (71)
...++++.++++.+...+.+|++
T Consensus 21 ~~~~~~l~~~l~~a~~d~~v~~v 43 (177)
T cd07014 21 NVSGDTTAAQIRDARLDPKVKAI 43 (177)
T ss_pred CcCHHHHHHHHHHHhcCCCceEE
Confidence 34677778888777665555544
No 175
>PHA02975 hypothetical protein; Provisional
Probab=20.46 E-value=33 Score=16.65 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=14.1
Q ss_pred EeeeeecccccCCCHHHHHHHHHc
Q 035170 9 LKGTFFGNYKPRSDLPSVVEKYMS 32 (71)
Q Consensus 9 i~Gs~~g~~~~~~~~~~~i~l~~~ 32 (71)
+.|+++.+. .++++..++-+.+
T Consensus 8 iFGvFmsS~--DdDF~nFI~vVks 29 (69)
T PHA02975 8 TYGVFLESN--DSDFEDFIDTIMH 29 (69)
T ss_pred HHHhhcCCC--hHHHHHHHHHHHH
Confidence 457775433 4788888776653
No 176
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.36 E-value=1.3e+02 Score=20.06 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=28.4
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHH
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINK 52 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~ 52 (71)
.++|.|...|.+....++.++-++++.=.+++..+...--+++|+.+
T Consensus 154 ~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~ 200 (468)
T TIGR02014 154 RVNIIGPTYGCFNMPSDLAEIRRLVEGIGAEVAHVYPLGSHLAEITK 200 (468)
T ss_pred eEEEECCCcCcCCChhHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHh
Confidence 47888743333332378888888888877777544443334454443
No 177
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.29 E-value=1.8e+02 Score=18.75 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=29.4
Q ss_pred ceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHHH
Q 035170 6 ERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINKA 53 (71)
Q Consensus 6 ~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~a 53 (71)
.+.|.|.+..++....+..++-++++.=.+++..+++.--.++|+.++
T Consensus 164 ~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~ 211 (430)
T cd01981 164 SVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNEL 211 (430)
T ss_pred cEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhh
Confidence 478888652222223678888888888767765555444456665554
No 178
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=20.27 E-value=1.4e+02 Score=16.32 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHcCCCcc
Q 035170 21 SDLPSVVEKYMSKELEV 37 (71)
Q Consensus 21 ~~~~~~i~l~~~g~~~~ 37 (71)
.+..++++++.+|+++.
T Consensus 139 ~~~~~~~~~l~~g~~d~ 155 (225)
T PF00497_consen 139 DSPEEALEALLSGRIDA 155 (225)
T ss_dssp SSHHHHHHHHHTTSSSE
T ss_pred ccHHHHHHHHhcCCeee
Confidence 45667777777776643
No 179
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=20.20 E-value=1.5e+02 Score=19.09 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=26.5
Q ss_pred cceeEeeeeecccccCCCHHHHHHHHHcCCCccccceeeeeehhhHHH
Q 035170 5 NERTLKGTFFGNYKPRSDLPSVVEKYMSKELEVEKFITHTVPFSEINK 52 (71)
Q Consensus 5 ~~~~i~Gs~~g~~~~~~~~~~~i~l~~~g~~~~~~~it~~~~l~~~~~ 52 (71)
+.++|.|.+ .. ..+..++-+++++-.+++...++.--+++|+.+
T Consensus 163 ~~VNliG~~--~~--~~d~~ei~~lL~~~Gl~v~~~~~~~~t~~ei~~ 206 (415)
T cd01977 163 YTINYIGDY--NI--QGDTEVLQKYFERMGIQVLSTFTGNGTYDDLRW 206 (415)
T ss_pred CcEEEEccC--CC--cccHHHHHHHHHHcCCeEEEEECCCCCHHHHHh
Confidence 457788866 22 266777778888766766444443344555443
No 180
>PF04400 DUF539: Protein of unknown function (DUF539); InterPro: IPR007495 This is a family of putative periplasmic proteins.
Probab=20.19 E-value=39 Score=15.02 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=9.7
Q ss_pred cccceeEeeeeec
Q 035170 3 LLNERTLKGTFFG 15 (71)
Q Consensus 3 ~~~~~~i~Gs~~g 15 (71)
+++...|.||..|
T Consensus 2 i~~rk~I~GSCGG 14 (45)
T PF04400_consen 2 IFGRKPIKGSCGG 14 (45)
T ss_pred cccCCcccccchh
Confidence 5677788898854
Done!