Your job contains 1 sequence.
>035172
MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL
NYNTLDKSDTS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035172
(71 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195718 - symbol:AT1G61700 species:3702 "Arabi... 356 1.4e-32 1
TAIR|locus:2823924 - symbol:NRPB10 species:3702 "Arabidop... 348 9.8e-32 1
FB|FBgn0039218 - symbol:Rpb10 "Rpb10" species:7227 "Droso... 303 5.7e-27 1
UNIPROTKB|E1BSY6 - symbol:POLR2L "Uncharacterized protein... 303 5.7e-27 1
UNIPROTKB|Q32P78 - symbol:POLR2L "DNA-directed RNA polyme... 303 5.7e-27 1
UNIPROTKB|P62875 - symbol:POLR2L "DNA-directed RNA polyme... 303 5.7e-27 1
UNIPROTKB|F2Z551 - symbol:LOC100511241 "Uncharacterized p... 303 5.7e-27 1
UNIPROTKB|Q6QN04 - symbol:POLR2L "DNA-directed RNA polyme... 303 5.7e-27 1
MGI|MGI:1913741 - symbol:Polr2l "polymerase (RNA) II (DNA... 303 5.7e-27 1
RGD|1566209 - symbol:Polr2l "polymerase (RNA) II (DNA dir... 303 5.7e-27 1
RGD|2319803 - symbol:LOC100365067 "Ab1-108-like" species:... 303 5.7e-27 1
ZFIN|ZDB-GENE-050522-181 - symbol:zgc:112305 "zgc:112305"... 302 7.3e-27 1
DICTYBASE|DDB_G0272036 - symbol:rpb10 "RNA polymerase II ... 300 1.2e-26 1
WB|WBGene00021347 - symbol:rpb-10 species:6239 "Caenorhab... 299 1.5e-26 1
POMBASE|SPAC1B3.12c - symbol:rpb10 "DNA-directed RNA poly... 285 4.6e-25 1
RGD|1564685 - symbol:Polr2l-ps1 "polymerase (RNA) II (DNA... 284 5.9e-25 1
RGD|2321130 - symbol:LOC100360929 "Ab1-108-like" species:... 284 5.9e-25 1
SGD|S000005736 - symbol:RPB10 "RNA polymerase subunit ABC... 267 3.8e-23 1
ASPGD|ASPL0000037889 - symbol:AN11183 species:162425 "Eme... 258 3.4e-22 1
UNIPROTKB|G4MXI6 - symbol:MGG_15646 "DNA-directed RNA pol... 250 2.4e-21 1
UNIPROTKB|F1SKC0 - symbol:POLR2L "Uncharacterized protein... 246 6.3e-21 1
GENEDB_PFALCIPARUM|PF07_0027 - symbol:PF07_0027 "DNA-dire... 215 1.2e-17 1
UNIPROTKB|Q8IC08 - symbol:PF07_0027 "DNA-directed RNA pol... 215 1.2e-17 1
>TAIR|locus:2195718 [details] [associations]
symbol:AT1G61700 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000268 InterPro:IPR009057 InterPro:IPR020789
Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:1.10.10.60
EMBL:AC005882 GO:GO:0003899 KO:K03007 IPI:IPI00546876 PIR:F96642
RefSeq:NP_176363.1 UniGene:At.52312 ProteinModelPortal:Q9SYA6
SMR:Q9SYA6 STRING:Q9SYA6 EnsemblPlants:AT1G61700.1 GeneID:842467
KEGG:ath:AT1G61700 TAIR:At1g61700 eggNOG:COG1644
HOGENOM:HOG000109502 InParanoid:Q9SYA6 OMA:CRRMILT PhylomeDB:Q9SYA6
ProtClustDB:PLN00032 Genevestigator:Q9SYA6 GermOnline:AT1G61700
InterPro:IPR023580 SUPFAM:SSF46924 Uniprot:Q9SYA6
Length = 71
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 64/69 (92%), Positives = 68/69 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NYNT++KSD
Sbjct: 61 NYNTMEKSD 69
>TAIR|locus:2823924 [details] [associations]
symbol:NRPB10 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IPI]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IPI] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:1.10.10.60
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665 KO:K03007
eggNOG:COG1644 HOGENOM:HOG000109502 ProtClustDB:PLN00032
InterPro:IPR023580 SUPFAM:SSF46924 OMA:KKYCCRR HSSP:O26147
EMBL:AY084808 EMBL:BT025306 EMBL:AK118363 EMBL:AK228397
IPI:IPI00539361 RefSeq:NP_849640.1 UniGene:At.44077
ProteinModelPortal:Q8LFJ6 SMR:Q8LFJ6 STRING:Q8LFJ6 PaxDb:Q8LFJ6
PRIDE:Q8LFJ6 EnsemblPlants:AT1G11475.1 GeneID:837690
KEGG:ath:AT1G11475 TAIR:At1g11475 InParanoid:Q8LFJ6
PhylomeDB:Q8LFJ6 Genevestigator:Q8LFJ6 Uniprot:Q8LFJ6
Length = 71
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 65/71 (91%), Positives = 66/71 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
>FB|FBgn0039218 [details] [associations]
symbol:Rpb10 "Rpb10" species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000268 InterPro:IPR009057 InterPro:IPR020789
Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
EMBL:AE014297 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.60 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
KO:K03007 eggNOG:COG1644 OMA:CRRMILT InterPro:IPR023580
SUPFAM:SSF46924 GeneTree:ENSGT00390000007087 EMBL:AY119184
RefSeq:NP_651280.1 UniGene:Dm.20527 ProteinModelPortal:Q9VC49
SMR:Q9VC49 DIP:DIP-21381N IntAct:Q9VC49 MINT:MINT-835011
STRING:Q9VC49 PaxDb:Q9VC49 PRIDE:Q9VC49 EnsemblMetazoa:FBtr0084688
GeneID:42942 KEGG:dme:Dmel_CG13628 UCSC:CG13628-RA CTD:42942
FlyBase:FBgn0039218 InParanoid:Q9VC49 OrthoDB:EOG4NZSB1
PhylomeDB:Q9VC49 GenomeRNAi:42942 NextBio:831435 Bgee:Q9VC49
GermOnline:CG13628 Uniprot:Q9VC49
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 55/67 (82%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>UNIPROTKB|E1BSY6 [details] [associations]
symbol:POLR2L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] HAMAP:MF_00250
InterPro:IPR000268 InterPro:IPR009057 InterPro:IPR020789
Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.60 GO:GO:0004672
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 InterPro:IPR023580
SUPFAM:SSF46924 GeneTree:ENSGT00390000007087 OMA:KKYCCRR
EMBL:AADN02030336 EMBL:AADN02030337 IPI:IPI00589022 SMR:E1BSY6
Ensembl:ENSGALT00000011073 Ensembl:ENSGALT00000039057
NextBio:20920920 Uniprot:E1BSY6
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>UNIPROTKB|Q32P78 [details] [associations]
symbol:POLR2L "DNA-directed RNA polymerases I, II, and III
subunit RPABC5" species:9913 "Bos taurus" [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000268 InterPro:IPR009057 InterPro:IPR020789
Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.60
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 KO:K03007
eggNOG:COG1644 InterPro:IPR023580 SUPFAM:SSF46924 EMBL:BC108227
IPI:IPI00696036 RefSeq:NP_001107198.1 UniGene:Bt.66354
ProteinModelPortal:Q32P78 SMR:Q32P78 STRING:Q32P78
Ensembl:ENSBTAT00000043971 GeneID:617375 KEGG:bta:617375 CTD:5441
GeneTree:ENSGT00390000007087 HOVERGEN:HBG061475 InParanoid:Q32P78
OMA:KKYCCRR OrthoDB:EOG4JDH8H NextBio:20900627 Uniprot:Q32P78
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>UNIPROTKB|P62875 [details] [associations]
symbol:POLR2L "DNA-directed RNA polymerases I, II, and III
subunit RPABC5" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA;TAS] [GO:0006356
"regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194
PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Reactome:REACT_1675 GO:GO:0006468 Gene3D:1.10.10.60
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006356 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 GO:GO:0006386 GO:GO:0006385
GO:GO:0005665 KO:K03007 eggNOG:COG1644 InterPro:IPR023580
SUPFAM:SSF46924 CTD:5441 HOVERGEN:HBG061475 OMA:KKYCCRR
OrthoDB:EOG4JDH8H EMBL:U37690 EMBL:CR536565 EMBL:AK311997
EMBL:BC005903 EMBL:BC018649 EMBL:Z47729 EMBL:Z47728 IPI:IPI00003311
PIR:S53015 RefSeq:NP_066951.1 UniGene:Hs.441072
ProteinModelPortal:P62875 SMR:P62875 IntAct:P62875
MINT:MINT-1132504 STRING:P62875 PhosphoSite:P62875 DMDM:51338657
PRIDE:P62875 DNASU:5441 Ensembl:ENST00000322028
Ensembl:ENST00000534030 GeneID:5441 KEGG:hsa:5441 UCSC:uc001lsc.3
GeneCards:GC11M000829 HGNC:HGNC:9199 MIM:601189 neXtProt:NX_P62875
PharmGKB:PA33519 InParanoid:P62875 PhylomeDB:P62875 GenomeRNAi:5441
NextBio:21055 Bgee:P62875 CleanEx:HS_POLR2L Genevestigator:P62875
GermOnline:ENSG00000177700 Uniprot:P62875
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>UNIPROTKB|F2Z551 [details] [associations]
symbol:LOC100511241 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] HAMAP:MF_00250
InterPro:IPR000268 InterPro:IPR009057 InterPro:IPR020789
Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:1.10.10.60
GO:GO:0003899 KO:K03007 InterPro:IPR023580 SUPFAM:SSF46924
GeneTree:ENSGT00390000007087 OMA:KKYCCRR EMBL:CU928976
RefSeq:XP_003122432.1 ProteinModelPortal:F2Z551 SMR:F2Z551
Ensembl:ENSSSCT00000014034 GeneID:100511241 KEGG:ssc:100511241
Uniprot:F2Z551
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>UNIPROTKB|Q6QN04 [details] [associations]
symbol:POLR2L "DNA-directed RNA polymerases I, II, and III
subunit RPABC5" species:34839 "Chinchilla lanigera" [GO:0005634
"nucleus" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006468 Gene3D:1.10.10.60 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 InterPro:IPR023580 SUPFAM:SSF46924 HOVERGEN:HBG061475
EMBL:AY533215 ProteinModelPortal:Q6QN04 SMR:Q6QN04 Uniprot:Q6QN04
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>MGI|MGI:1913741 [details] [associations]
symbol:Polr2l "polymerase (RNA) II (DNA directed)
polypeptide L" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194
PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112 MGI:MGI:1913741
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006468
Gene3D:1.10.10.60 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
KO:K03007 eggNOG:COG1644 InterPro:IPR023580 SUPFAM:SSF46924
CTD:5441 GeneTree:ENSGT00390000007087 HOVERGEN:HBG061475
OMA:KKYCCRR OrthoDB:EOG4JDH8H EMBL:AK011021 EMBL:AK149137
EMBL:AK168159 IPI:IPI00850336 RefSeq:NP_079869.1 UniGene:Mm.380115
ProteinModelPortal:P62876 SMR:P62876 STRING:P62876
PhosphoSite:P62876 PaxDb:P62876 PRIDE:P62876
Ensembl:ENSMUST00000043870 GeneID:66491 KEGG:mmu:66491
UCSC:uc009klm.2 InParanoid:P62876 NextBio:321840 Bgee:P62876
CleanEx:MM_POLR2L Genevestigator:P62876
GermOnline:ENSMUSG00000038489 Uniprot:P62876
Length = 67
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>RGD|1566209 [details] [associations]
symbol:Polr2l "polymerase (RNA) II (DNA directed) polypeptide L"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0004672 "protein kinase
activity" evidence=ISO] HAMAP:MF_00250 InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194 ProDom:PD006539
PROSITE:PS01112 RGD:1566209 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.10.60 GO:GO:0003899 eggNOG:COG1644
InterPro:IPR023580 SUPFAM:SSF46924 OrthoDB:EOG4JDH8H HSSP:O26147
PANTHER:PTHR23413:SF2 IPI:IPI00382271 EMBL:AY325138
UniGene:Rn.30672 ProteinModelPortal:Q7TPA2 SMR:Q7TPA2 STRING:Q7TPA2
UCSC:RGD:1566209 Genevestigator:Q7TPA2 Uniprot:Q7TPA2
Length = 323
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 257 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 316
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 317 NYAPLEK 323
>RGD|2319803 [details] [associations]
symbol:LOC100365067 "Ab1-108-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] HAMAP:MF_00250 InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194 ProDom:PD006539
PROSITE:PS01112 RGD:2319803 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.10.60 GO:GO:0003899 EMBL:AC109542
InterPro:IPR023580 SUPFAM:SSF46924 GeneTree:ENSGT00390000007087
PANTHER:PTHR23413:SF2 IPI:IPI00382271 Ensembl:ENSRNOT00000026113
Uniprot:F1MAS3
Length = 331
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 265 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 324
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 325 NYAPLEK 331
>ZFIN|ZDB-GENE-050522-181 [details] [associations]
symbol:zgc:112305 "zgc:112305" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 ZFIN:ZDB-GENE-050522-181 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:1.10.10.60 GO:GO:0003899
InterPro:IPR023580 SUPFAM:SSF46924 HOVERGEN:HBG061475 EMBL:BC095745
IPI:IPI00607261 UniGene:Dr.13705 ProteinModelPortal:Q502D4
SMR:Q502D4 STRING:Q502D4 InParanoid:Q502D4 ArrayExpress:Q502D4
Uniprot:Q502D4
Length = 67
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLPHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>DICTYBASE|DDB_G0272036 [details] [associations]
symbol:rpb10 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194
PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
dictyBase:DDB_G0272036 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000007 Gene3D:1.10.10.60
GO:GO:0006366 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 GO:GO:0005665 KO:K03007 eggNOG:COG1644
OMA:CRRMILT InterPro:IPR023580 SUPFAM:SSF46924 RefSeq:XP_645350.1
HSSP:O26147 ProteinModelPortal:Q55AB6 SMR:Q55AB6 STRING:Q55AB6
EnsemblProtists:DDB0216273 GeneID:8618238 KEGG:ddi:DDB_G0272036
ProtClustDB:CLSZ2431304 Uniprot:Q55AB6
Length = 70
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 56/65 (86%), Positives = 57/65 (87%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YL LLQ DY EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTL 65
NY L
Sbjct: 61 NYTPL 65
>WB|WBGene00021347 [details] [associations]
symbol:rpb-10 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 GO:GO:0005634 GO:GO:0009792 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:1.10.10.60
GO:GO:0003899 EMBL:FO081769 KO:K03007 eggNOG:COG1644
HOGENOM:HOG000109502 OMA:CRRMILT InterPro:IPR023580 SUPFAM:SSF46924
GeneTree:ENSGT00390000007087 RefSeq:NP_490923.1
ProteinModelPortal:Q9GR61 SMR:Q9GR61 STRING:Q9GR61 PaxDb:Q9GR61
EnsemblMetazoa:Y37E3.3 GeneID:171763 KEGG:cel:CELE_Y37E3.3
CTD:171763 WormBase:Y37E3.3 InParanoid:Q9GR61 NextBio:872585
Uniprot:Q9GR61
Length = 67
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIG+KW+TYL LQ++Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ L+K
Sbjct: 61 NYHPLEK 67
>POMBASE|SPAC1B3.12c [details] [associations]
symbol:rpb10 "DNA-directed RNA polymerase I, II, and III
subunit Rpb10" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IGI]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IGI] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IGI] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=IGI] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IGI] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 PomBase:SPAC1B3.12c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.10.60 GO:GO:0006366 GO:GO:0006383 GO:GO:0006360
GO:GO:0005736 GO:GO:0005666 GO:GO:0003899 GO:GO:0005665 KO:K03007
PDB:3H0G PDBsum:3H0G eggNOG:COG1644 HOGENOM:HOG000109502
OMA:CRRMILT InterPro:IPR023580 SUPFAM:SSF46924 EMBL:X95733
EMBL:U80219 EMBL:D89596 EMBL:AF027818 PIR:T43545 RefSeq:NP_594797.1
ProteinModelPortal:O13877 SMR:O13877 IntAct:O13877
MINT:MINT-1214353 STRING:O13877 EnsemblFungi:SPAC1B3.12c.1
GeneID:2542233 KEGG:spo:SPAC1B3.12c OrthoDB:EOG4ZGSP4
EvolutionaryTrace:O13877 NextBio:20803300 Uniprot:O13877
Length = 71
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 52/67 (77%), Positives = 58/67 (86%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKVIG+KWDTYL LLQ D EG+ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN L K
Sbjct: 61 CYNPLSK 67
>RGD|1564685 [details] [associations]
symbol:Polr2l-ps1 "polymerase (RNA) II (DNA directed)
polypeptide L, pseudogene 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 RGD:1564685 RGD:2321130 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.10.60 GO:GO:0003899 InterPro:IPR023580
SUPFAM:SSF46924 OrthoDB:EOG4JDH8H IPI:IPI00389101
ProteinModelPortal:D3ZQ12 Ensembl:ENSRNOT00000030597
UCSC:RGD:2321130 OMA:ETENREP Uniprot:D3ZQ12
Length = 67
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 51/67 (76%), Positives = 58/67 (86%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG ALDALGL YCCRR+L+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGHALDALGLKCYCCRRVLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>RGD|2321130 [details] [associations]
symbol:LOC100360929 "Ab1-108-like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 RGD:1564685 RGD:2321130 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.10.60 GO:GO:0003899 InterPro:IPR023580
SUPFAM:SSF46924 OrthoDB:EOG4JDH8H IPI:IPI00389101
ProteinModelPortal:D3ZQ12 Ensembl:ENSRNOT00000030597
UCSC:RGD:2321130 OMA:ETENREP Uniprot:D3ZQ12
Length = 67
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 51/67 (76%), Positives = 58/67 (86%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG ALDALGL YCCRR+L+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGHALDALGLKCYCCRRVLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>SGD|S000005736 [details] [associations]
symbol:RPB10 "RNA polymerase subunit ABC10-beta" species:4932
"Saccharomyces cerevisiae" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0001056 "RNA polymerase III activity"
evidence=IC;IDA] [GO:0001054 "RNA polymerase I activity"
evidence=IC] [GO:0001055 "RNA polymerase II activity" evidence=IDA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IDA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0006383 "transcription from
RNA polymerase III promoter" evidence=IC] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=IGI;IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000268 InterPro:IPR009057
InterPro:IPR020789 Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539
PROSITE:PS01112 SGD:S000005736 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.10.60 GO:GO:0006366
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K07972 RefSeq:NP_014855.3
GeneID:854387 KEGG:sce:YOR212W EMBL:L11274 GO:GO:0005665
RefSeq:NP_014853.3 GeneID:854385 KEGG:sce:YOR210W KO:K03007
PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV
PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF
PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77
PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6
PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ
PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI
PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP
PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY
PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O
PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15
PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D
PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G
PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR
PDB:4BBS PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83
PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S
PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF
PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W
PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H
PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7
PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY
PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM
PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ
PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP
PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW
PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N
PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14
PDBsum:3S15 PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N
PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B
PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G
PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M
PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS Reactome:REACT_87991
eggNOG:COG1644 HOGENOM:HOG000109502 OMA:CRRMILT InterPro:IPR023580
SUPFAM:SSF46924 GeneTree:ENSGT00390000007087 OrthoDB:EOG4ZGSP4
EMBL:M60479 EMBL:S62098 EMBL:Z75118 EMBL:AY558433 PIR:S48885
ProteinModelPortal:P22139 SMR:P22139 DIP:DIP-825N IntAct:P22139
MINT:MINT-384345 STRING:P22139 PaxDb:P22139 PeptideAtlas:P22139
EnsemblFungi:YOR210W CYGD:YOR210w EvolutionaryTrace:P22139
NextBio:976532 Genevestigator:P22139 GermOnline:YOR210W
Uniprot:P22139
Length = 70
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 48/70 (68%), Positives = 58/70 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW++YL+LLQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>ASPGD|ASPL0000037889 [details] [associations]
symbol:AN11183 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0001055
"RNA polymerase II activity" evidence=IEA] [GO:0001056 "RNA
polymerase III activity" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=IEA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] HAMAP:MF_00250
InterPro:IPR000268 InterPro:IPR009057 InterPro:IPR020789
Pfam:PF01194 PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112
GO:GO:0003677 GO:GO:0008270 EMBL:BN001306 GO:GO:0006351
Gene3D:1.10.10.60 GO:GO:0003899 HOGENOM:HOG000109502 OMA:CRRMILT
InterPro:IPR023580 SUPFAM:SSF46924 EnsemblFungi:CADANIAT00009559
Uniprot:C8VH91
Length = 74
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGIPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPTER 67
>UNIPROTKB|G4MXI6 [details] [associations]
symbol:MGG_15646 "DNA-directed RNA polymerase N/8 kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00250 InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194
PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:1.10.10.60 EMBL:CM001232
GO:GO:0003899 InterPro:IPR023580 SUPFAM:SSF46924
RefSeq:XP_003714124.1 ProteinModelPortal:G4MXI6 SMR:G4MXI6
EnsemblFungi:MGG_15646T0 GeneID:12984595 KEGG:mgr:MGG_15646
Uniprot:G4MXI6
Length = 78
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKV G+ W+ +L+L+ + +GDA+DALG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERFLNLIDSGMSDGDAMDALGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
Y+T + D
Sbjct: 61 KYSTEGRHD 69
>UNIPROTKB|F1SKC0 [details] [associations]
symbol:POLR2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000268
InterPro:IPR009057 Pfam:PF01194 ProDom:PD006539 GO:GO:0003677
Gene3D:1.10.10.60 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 InterPro:IPR023580 SUPFAM:SSF46924
GeneTree:ENSGT00390000007087 PANTHER:PTHR23413:SF2 EMBL:CU633380
ProteinModelPortal:F1SKC0 Ensembl:ENSSSCT00000000499 Uniprot:F1SKC0
Length = 67
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M IPV CF CGK++ N W+ YL LLQA Y E DALDALGL +YCCR ML+ ++DLIEKLL
Sbjct: 1 MTIPVHCFMCGKIVSNTWEAYLGLLQAKYTEEDALDALGLKQYCCRHMLLAYMDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>GENEDB_PFALCIPARUM|PF07_0027 [details] [associations]
symbol:PF07_0027 "DNA-directed RNA polymerase 2
8.2 kDa polypeptide, putative" species:5833 "Plasmodium falciparum"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] HAMAP:MF_00250 InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194
PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.60 GO:GO:0006366 EMBL:AL844506
GO:GO:0003899 GO:GO:0005665 KO:K03007 HOGENOM:HOG000109502
OMA:CRRMILT InterPro:IPR023580 SUPFAM:SSF46924 HSSP:O26147
ProtClustDB:CLSZ2431304 RefSeq:XP_001348995.1
ProteinModelPortal:Q8IC08 SMR:Q8IC08 PRIDE:Q8IC08
EnsemblProtists:PF07_0027:mRNA GeneID:2655063 KEGG:pfa:PF07_0027
EuPathDB:PlasmoDB:PF3D7_0708100 PANTHER:PTHR23413:SF2
Uniprot:Q8IC08
Length = 69
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGN W Y L+ + DAL+ L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 CYNIYER 67
>UNIPROTKB|Q8IC08 [details] [associations]
symbol:PF07_0027 "DNA-directed RNA polymerase 2 8.2 kDa
polypeptide, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] HAMAP:MF_00250 InterPro:IPR000268
InterPro:IPR009057 InterPro:IPR020789 Pfam:PF01194
PIRSF:PIRSF005653 ProDom:PD006539 PROSITE:PS01112 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.10.60 GO:GO:0006366 EMBL:AL844506
GO:GO:0003899 GO:GO:0005665 KO:K03007 HOGENOM:HOG000109502
OMA:CRRMILT InterPro:IPR023580 SUPFAM:SSF46924 HSSP:O26147
ProtClustDB:CLSZ2431304 RefSeq:XP_001348995.1
ProteinModelPortal:Q8IC08 SMR:Q8IC08 PRIDE:Q8IC08
EnsemblProtists:PF07_0027:mRNA GeneID:2655063 KEGG:pfa:PF07_0027
EuPathDB:PlasmoDB:PF3D7_0708100 PANTHER:PTHR23413:SF2
Uniprot:Q8IC08
Length = 69
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGN W Y L+ + DAL+ L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 CYNIYER 67
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.143 0.457 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 71 71 0.00091 102 3 11 22 0.44 28
29 0.42 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 557 (59 KB)
Total size of DFA: 109 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.68u 0.14s 8.82t Elapsed: 00:00:01
Total cpu time: 8.68u 0.14s 8.82t Elapsed: 00:00:01
Start: Fri May 10 06:15:18 2013 End: Fri May 10 06:15:19 2013