BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035172
(71 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449441830|ref|XP_004138685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cucumis sativus]
gi|449522728|ref|XP_004168378.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cucumis sativus]
Length = 71
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/71 (97%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
>gi|225425585|ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Vitis vinifera]
gi|297739069|emb|CBI28558.3| unnamed protein product [Vitis vinifera]
Length = 71
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 70/71 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+KS+TS
Sbjct: 61 NYNTLEKSETS 71
>gi|388499416|gb|AFK37774.1| unknown [Lotus japonicus]
gi|388514409|gb|AFK45266.1| unknown [Lotus japonicus]
Length = 71
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQ+DY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTLDKSDTS
Sbjct: 61 NYNTLDKSDTS 71
>gi|356497696|ref|XP_003517695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Glycine max]
gi|356502404|ref|XP_003520009.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Glycine max]
gi|255631340|gb|ACU16037.1| unknown [Glycine max]
Length = 71
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQ+DY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTLDKSD S
Sbjct: 61 NYNTLDKSDPS 71
>gi|356515720|ref|XP_003526546.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Glycine max]
Length = 71
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/69 (98%), Positives = 68/69 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NYNTLDKSD
Sbjct: 61 NYNTLDKSD 69
>gi|356508029|ref|XP_003522765.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Glycine max]
Length = 71
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTLDKSD +
Sbjct: 61 NYNTLDKSDPN 71
>gi|224069248|ref|XP_002326311.1| predicted protein [Populus trichocarpa]
gi|224071453|ref|XP_002303467.1| predicted protein [Populus trichocarpa]
gi|118486243|gb|ABK94963.1| unknown [Populus trichocarpa]
gi|222833504|gb|EEE71981.1| predicted protein [Populus trichocarpa]
gi|222840899|gb|EEE78446.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/71 (94%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+KS+ S
Sbjct: 61 NYNTLEKSEGS 71
>gi|116778557|gb|ABK20909.1| unknown [Picea sitchensis]
gi|116781551|gb|ABK22149.1| unknown [Picea sitchensis]
gi|116789545|gb|ABK25286.1| unknown [Picea sitchensis]
Length = 71
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/71 (92%), Positives = 70/71 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL++S+T+
Sbjct: 61 NYNTLERSETN 71
>gi|326497947|dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520229|dbj|BAK04039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 71
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/71 (92%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++TS
Sbjct: 61 NYNTLEKTETS 71
>gi|449435392|ref|XP_004135479.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cucumis sativus]
gi|449478734|ref|XP_004155405.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cucumis sativus]
Length = 71
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/69 (94%), Positives = 68/69 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NYNT+DKS+
Sbjct: 61 NYNTMDKSE 69
>gi|102139964|gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative
[Musa balbisiana]
Length = 70
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/70 (92%), Positives = 69/70 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDT 70
NYNTL+K+++
Sbjct: 61 NYNTLEKTES 70
>gi|115487650|ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group]
gi|113648819|dbj|BAF29331.1| Os12g0180400 [Oryza sativa Japonica Group]
Length = 72
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/71 (91%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++T+
Sbjct: 61 NYNTLEKTETA 71
>gi|115484555|ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group]
gi|62733950|gb|AAX96059.1| dna-directed rna polymerase ii 8.2 kda polypeptide (ec
2.7.7.6)(rpb10) (rp10) (abc10) [Oryza sativa Japonica
Group]
gi|77549069|gb|ABA91866.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|113644643|dbj|BAF27784.1| Os11g0194800 [Oryza sativa Japonica Group]
gi|215766304|dbj|BAG98532.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 74
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/71 (91%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++T+
Sbjct: 61 NYNTLEKTETT 71
>gi|15220572|ref|NP_176363.1| DNA-directed RNA polymerases II subunit L [Arabidopsis thaliana]
gi|297840381|ref|XP_002888072.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|11134747|sp|Q9SYA6.1|RPAB5_ARATH RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=ABC10; AltName: Full=DNA-directed
RNA polymerase III subunit L; AltName: Full=RPB10
homolog
gi|4508082|gb|AAD21426.1| Putative RNA polymerase II subunit Rpb10 [Arabidopsis thaliana]
gi|297333913|gb|EFH64331.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|332195756|gb|AEE33877.1| DNA-directed RNA polymerases II subunit L [Arabidopsis thaliana]
Length = 71
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNT++KSD +
Sbjct: 61 NYNTMEKSDPN 71
>gi|388511517|gb|AFK43820.1| unknown [Medicago truncatula]
Length = 71
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 68/71 (95%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD+YLD LQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNT++K++ S
Sbjct: 61 NYNTMEKAEAS 71
>gi|357160647|ref|XP_003578831.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Brachypodium distachyon]
Length = 71
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 68/71 (95%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++ +
Sbjct: 61 NYNTLEKTEAT 71
>gi|226528766|ref|NP_001148175.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|224030055|gb|ACN34103.1| unknown [Zea mays]
gi|413916302|gb|AFW56234.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 242
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 67/71 (94%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 172 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 231
Query: 61 NYNTLDKSDTS 71
NYNTL+K++TS
Sbjct: 232 NYNTLEKTETS 242
>gi|168033365|ref|XP_001769186.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679612|gb|EDQ66058.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 73
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/71 (88%), Positives = 68/71 (95%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALALVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL++++ +
Sbjct: 61 NYNTLERNENT 71
>gi|226506188|ref|NP_001152395.1| LOC100286035 [Zea mays]
gi|195655855|gb|ACG47395.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
Length = 71
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 67/71 (94%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDVYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++TS
Sbjct: 61 NYNTLEKTETS 71
>gi|2833375|sp|Q39290.1|RPAB5_BRANA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=ABC10; AltName: Full=DNA-directed
RNA polymerase III subunit L; AltName: Full=RPB10
homolog
gi|533690|gb|AAA21279.1| RNA polymerase II subunit RPB10 homolog; similar to yeast RNA
polymerase II subunit RPB10, Swiss-Prot Accession
Number P22139 [Brassica napus]
Length = 71
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/71 (91%), Positives = 66/71 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
>gi|30682258|ref|NP_849640.1| DNA-directed RNA Polymerase II subunit L [Arabidopsis thaliana]
gi|297843980|ref|XP_002889871.1| hypothetical protein ARALYDRAFT_471284 [Arabidopsis lyrata subsp.
lyrata]
gi|21537033|gb|AAM61374.1| RNA polymerase II subunit (hsRPB10), putative [Arabidopsis
thaliana]
gi|26451764|dbj|BAC42977.1| putative RNA polymerase II subunit hsRPB10 [Arabidopsis thaliana]
gi|94807650|gb|ABF47122.1| At1g11475 [Arabidopsis thaliana]
gi|110736743|dbj|BAF00334.1| hypothetical protein [Arabidopsis thaliana]
gi|297335713|gb|EFH66130.1| hypothetical protein ARALYDRAFT_471284 [Arabidopsis lyrata subsp.
lyrata]
gi|332190620|gb|AEE28741.1| DNA-directed RNA Polymerase II subunit L [Arabidopsis thaliana]
Length = 71
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/71 (91%), Positives = 66/71 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
>gi|226510500|ref|NP_001149707.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|242082992|ref|XP_002441921.1| hypothetical protein SORBIDRAFT_08g004910 [Sorghum bicolor]
gi|194696346|gb|ACF82257.1| unknown [Zea mays]
gi|195616462|gb|ACG30061.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|195617954|gb|ACG30807.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|195627516|gb|ACG35588.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|195629628|gb|ACG36455.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|241942614|gb|EES15759.1| hypothetical protein SORBIDRAFT_08g004910 [Sorghum bicolor]
gi|413916300|gb|AFW56232.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
gi|413916301|gb|AFW56233.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
gi|413951725|gb|AFW84374.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 71
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 67/71 (94%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++TS
Sbjct: 61 NYNTLEKTETS 71
>gi|357485847|ref|XP_003613211.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Medicago truncatula]
gi|355514546|gb|AES96169.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Medicago truncatula]
gi|388514743|gb|AFK45433.1| unknown [Medicago truncatula]
Length = 71
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/71 (87%), Positives = 67/71 (94%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD+YLD LQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNT++K + +
Sbjct: 61 NYNTMEKHEAN 71
>gi|222615665|gb|EEE51797.1| hypothetical protein OsJ_33258 [Oryza sativa Japonica Group]
Length = 74
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 68/71 (95%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNK D YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKGDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K++T+
Sbjct: 61 NYNTLEKTETT 71
>gi|384248684|gb|EIE22167.1| hypothetical protein COCSUDRAFT_36935 [Coccomyxa subellipsoidea
C-169]
Length = 77
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 66/71 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQA+Y E DALDALGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAEYTEADALDALGLTRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+++ +
Sbjct: 61 NYNTLERAPEA 71
>gi|255583986|ref|XP_002532739.1| DNA-directed RNA polymerase II, subunit n, putative [Ricinus
communis]
gi|223527516|gb|EEF29641.1| DNA-directed RNA polymerase II, subunit n, putative [Ricinus
communis]
Length = 76
Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/76 (85%), Positives = 68/76 (89%), Gaps = 5/76 (6%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYN-----TLDKSDTS 71
NYN L++S+ S
Sbjct: 61 NYNKYPFAALERSEGS 76
>gi|302760963|ref|XP_002963904.1| hypothetical protein SELMODRAFT_79899 [Selaginella
moellendorffii]
gi|302813244|ref|XP_002988308.1| hypothetical protein SELMODRAFT_127452 [Selaginella
moellendorffii]
gi|300144040|gb|EFJ10727.1| hypothetical protein SELMODRAFT_127452 [Selaginella
moellendorffii]
gi|300169172|gb|EFJ35775.1| hypothetical protein SELMODRAFT_79899 [Selaginella
moellendorffii]
Length = 65
Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/64 (95%), Positives = 63/64 (98%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE +ALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPESEALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNT 64
NYN+
Sbjct: 61 NYNS 64
>gi|302835105|ref|XP_002949114.1| hypothetical protein VOLCADRAFT_74070 [Volvox carteri f.
nagariensis]
gi|300265416|gb|EFJ49607.1| hypothetical protein VOLCADRAFT_74070 [Volvox carteri f.
nagariensis]
Length = 77
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/71 (84%), Positives = 64/71 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL++S +
Sbjct: 61 NYNTLERSAQA 71
>gi|357147234|ref|XP_003574271.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Brachypodium distachyon]
Length = 71
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 65/71 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPV FTCGKVIGNKWD YLDLLQADY EG ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVHYFTCGKVIGNKWDHYLDLLQADYTEGAALDTLGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+K+++S
Sbjct: 61 NYNTLEKTESS 71
>gi|159470673|ref|XP_001693481.1| DNA-directed RNA polymerases I/II/III subunit [Chlamydomonas
reinhardtii]
gi|158282984|gb|EDP08735.1| DNA-directed RNA polymerases I/II/III subunit [Chlamydomonas
reinhardtii]
Length = 79
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/71 (83%), Positives = 64/71 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQA Y E +ALD LGL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAGYSEQEALDGLGLSRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+++ +
Sbjct: 61 NYNTLERAAQA 71
>gi|303284635|ref|XP_003061608.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456938|gb|EEH54238.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 74
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/71 (85%), Positives = 64/71 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY E DALDAL L RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSERDALDALDLNRYCCRRMLMCHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL++ D +
Sbjct: 61 NYNTLERVDAN 71
>gi|363734302|ref|XP_001233059.2| PREDICTED: uncharacterized protein LOC770704 [Gallus gallus]
Length = 570
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 504 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 563
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 564 NYAPLEK 570
>gi|33086454|gb|AAP92539.1| Ab1-108 [Rattus norvegicus]
Length = 323
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 257 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 316
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 317 NYAPLEK 323
>gi|255086357|ref|XP_002509145.1| predicted protein [Micromonas sp. RCC299]
gi|226524423|gb|ACO70403.1| predicted protein [Micromonas sp. RCC299]
Length = 69
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 63/69 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY E DALDAL L RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTERDALDALDLHRYCCRRMLMCHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NYNTL++ D
Sbjct: 61 NYNTLERQD 69
>gi|412990075|emb|CCO20717.1| predicted protein [Bathycoccus prasinos]
Length = 69
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/69 (85%), Positives = 63/69 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY E DALDAL L RYCCRRM+M HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYAEKDALDALELKRYCCRRMVMCHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NYNTL++ +
Sbjct: 61 NYNTLERQE 69
>gi|323447953|gb|EGB03858.1| hypothetical protein AURANDRAFT_33434 [Aureococcus
anophagefferens]
Length = 77
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/71 (80%), Positives = 65/71 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW++YL+LL+ADY EGDALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWESYLELLKADYSEGDALDELGLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL++ T
Sbjct: 61 NYNTLERRVTQ 71
>gi|145352128|ref|XP_001420409.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580643|gb|ABO98702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 71
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/71 (84%), Positives = 64/71 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWDTYLDLLQADY E DALDALGL RYCCRRM+M HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSERDALDALGLNRYCCRRMVMCHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YNTL++ D +
Sbjct: 61 RYNTLERVDDA 71
>gi|219115427|ref|XP_002178509.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410244|gb|EEC50174.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 73
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/71 (84%), Positives = 64/71 (90%), Gaps = 1/71 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW+TYL LLQADY EGDALD LGL RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLSLLQADYSEGDALDELGLKRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNT + SD +
Sbjct: 61 NYNT-ESSDVA 70
>gi|357485845|ref|XP_003613210.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Medicago truncatula]
gi|355514545|gb|AES96168.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Medicago truncatula]
Length = 123
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 65/71 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+G+KWDTYL+LLQ+ Y EGDALD+LGLVRYCCRRMLMTHV+LI+KLL
Sbjct: 53 MIIPVRCFTCGKVVGDKWDTYLELLQSGYTEGDALDSLGLVRYCCRRMLMTHVELIDKLL 112
Query: 61 NYNTLDKSDTS 71
NYN L+K +
Sbjct: 113 NYNPLEKHGAN 123
>gi|226505876|ref|NP_001151378.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|195646300|gb|ACG42618.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Zea mays]
gi|413951726|gb|AFW84375.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 84
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/63 (93%), Positives = 59/63 (93%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYN 63
NYN
Sbjct: 61 NYN 63
>gi|332835514|ref|XP_001151400.2| PREDICTED: uncharacterized protein LOC740555 [Pan troglodytes]
Length = 196
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 130 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 189
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 190 NYAPLEK 196
>gi|224001580|ref|XP_002290462.1| DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220973884|gb|EED92214.1| DNA directed RNA polymerase II subunit, 8.2kDa, rpb10-like
protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 64
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/64 (89%), Positives = 60/64 (93%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW+TYL LLQADY EGDALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLYLLQADYSEGDALDELGLRRYCCRRMMLTHVDLIEKLL 60
Query: 61 NYNT 64
NYNT
Sbjct: 61 NYNT 64
>gi|119622813|gb|EAX02408.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa [Homo
sapiens]
Length = 141
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 75 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 134
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 135 NYAPLEK 141
>gi|313236953|emb|CBY12200.1| unnamed protein product [Oikopleura dioica]
gi|313241316|emb|CBY33592.1| unnamed protein product [Oikopleura dioica]
Length = 68
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 62/68 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+THVDL+EKLL
Sbjct: 1 MIIPVRCFTCGKVVGNKWEEYLQLLQAEYAEGDALDALGLKRYCCRRMLLTHVDLVEKLL 60
Query: 61 NYNTLDKS 68
N+ L+K+
Sbjct: 61 NFAPLEKA 68
>gi|242067755|ref|XP_002449154.1| hypothetical protein SORBIDRAFT_05g005840 [Sorghum bicolor]
gi|241934997|gb|EES08142.1| hypothetical protein SORBIDRAFT_05g005840 [Sorghum bicolor]
Length = 73
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 62/68 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+KWD YL+L+QADY E DAL AL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGDKWDAYLELVQADYDEEDALTALNLNRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
NYNTL+K+
Sbjct: 61 NYNTLEKT 68
>gi|340377977|ref|XP_003387505.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Amphimedon queenslandica]
Length = 67
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 62/67 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|260826958|ref|XP_002608432.1| hypothetical protein BRAFLDRAFT_283143 [Branchiostoma floridae]
gi|229293783|gb|EEN64442.1| hypothetical protein BRAFLDRAFT_283143 [Branchiostoma floridae]
Length = 68
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 62/68 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW+ YL LLQADY EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWEWYLGLLQADYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDKS 68
NY L+K+
Sbjct: 61 NYAPLEKA 68
>gi|195996661|ref|XP_002108199.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190588975|gb|EDV28997.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 67
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW+ YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWEAYLHLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYTPLEK 67
>gi|390339982|ref|XP_790633.3| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Strongylocentrotus purpuratus]
Length = 83
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 17 MIIPVRCFTCGKVVGNKWEAYLGLLQAEYSEGDALDALGLKRYCCRRMLLAHVDLIEKLL 76
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 77 NYAPLEK 83
>gi|321475125|gb|EFX86088.1| hypothetical protein DAPPUDRAFT_230475 [Daphnia pulex]
Length = 67
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW+TYL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWETYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|384491853|gb|EIE83049.1| DNA-directed RNA polymerase I, II, and III subunit RPABC5
[Rhizopus delemar RA 99-880]
Length = 74
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/68 (79%), Positives = 63/68 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIGNKWD YL LLQA+Y EG+ALDALGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGNKWDNYLSLLQAEYTEGEALDALGLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
+YN L+++
Sbjct: 61 HYNPLERT 68
>gi|195452198|ref|XP_002073255.1| GK14032 [Drosophila willistoni]
gi|194169340|gb|EDW84241.1| GK14032 [Drosophila willistoni]
Length = 67
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW++YL LLQADY EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQADYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|284172389|ref|NP_001165065.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa, gene 2
[Xenopus (Silurana) tropicalis]
gi|109150091|gb|AAI17670.1| MGC146599 protein [Xenopus (Silurana) tropicalis]
gi|138519706|gb|AAI35759.1| Unknown (protein for MGC:121801) [Xenopus (Silurana) tropicalis]
Length = 67
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|432851758|ref|XP_004067070.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like isoform 1 [Oryzias latipes]
gi|432851760|ref|XP_004067071.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like isoform 2 [Oryzias latipes]
Length = 68
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|291223843|ref|XP_002731916.1| PREDICTED: Ab1-108-like [Saccoglossus kowalevskii]
Length = 67
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+GNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|156367592|ref|XP_001627500.1| predicted protein [Nematostella vectensis]
gi|156214411|gb|EDO35400.1| predicted protein [Nematostella vectensis]
Length = 67
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|229577074|ref|NP_001153297.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Danio
rerio]
gi|348509625|ref|XP_003442348.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Oreochromis niloticus]
gi|146218503|gb|AAI39865.1| Zgc:112305 protein [Danio rerio]
gi|229367728|gb|ACQ58844.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Anoplopoma fimbria]
Length = 67
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|24649759|ref|NP_651280.1| Rpb10 [Drosophila melanogaster]
gi|125772917|ref|XP_001357717.1| GA12420 [Drosophila pseudoobscura pseudoobscura]
gi|194741880|ref|XP_001953415.1| GF17223 [Drosophila ananassae]
gi|194909458|ref|XP_001981950.1| GG11312 [Drosophila erecta]
gi|195037216|ref|XP_001990060.1| GH18444 [Drosophila grimshawi]
gi|195107889|ref|XP_001998526.1| GI24021 [Drosophila mojavensis]
gi|195158697|ref|XP_002020222.1| GL13620 [Drosophila persimilis]
gi|195331721|ref|XP_002032548.1| GM26620 [Drosophila sechellia]
gi|195388708|ref|XP_002053021.1| GJ23650 [Drosophila virilis]
gi|195504710|ref|XP_002099195.1| GE23508 [Drosophila yakuba]
gi|195573564|ref|XP_002104762.1| GD21123 [Drosophila simulans]
gi|11134791|sp|Q9VC49.1|RPAB5_DROME RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=RPB10 homolog
gi|7301195|gb|AAF56326.1| Rpb10 [Drosophila melanogaster]
gi|21430732|gb|AAM51044.1| SD08670p [Drosophila melanogaster]
gi|54637449|gb|EAL26851.1| GA12420 [Drosophila pseudoobscura pseudoobscura]
gi|190626474|gb|EDV41998.1| GF17223 [Drosophila ananassae]
gi|190656588|gb|EDV53820.1| GG11312 [Drosophila erecta]
gi|193894256|gb|EDV93122.1| GH18444 [Drosophila grimshawi]
gi|193915120|gb|EDW13987.1| GI24021 [Drosophila mojavensis]
gi|194116991|gb|EDW39034.1| GL13620 [Drosophila persimilis]
gi|194121491|gb|EDW43534.1| GM26620 [Drosophila sechellia]
gi|194151107|gb|EDW66541.1| GJ23650 [Drosophila virilis]
gi|194185296|gb|EDW98907.1| GE23508 [Drosophila yakuba]
gi|194200689|gb|EDX14265.1| GD21123 [Drosophila simulans]
gi|220942200|gb|ACL83643.1| Rpb10-PA [synthetic construct]
gi|220952410|gb|ACL88748.1| Rpb10-PA [synthetic construct]
Length = 67
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|219881542|ref|NP_001137388.1| RNA polymerase II subunit 10 [Tribolium castaneum]
gi|58394474|ref|XP_320749.2| AGAP011761-PA [Anopheles gambiae str. PEST]
gi|110749402|ref|XP_001119937.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Apis mellifera]
gi|157107235|ref|XP_001649686.1| RNA polymerase II subunit Rpb10, putative [Aedes aegypti]
gi|170039744|ref|XP_001847684.1| DNA-directed RNA polymerase II 7.6 kDa polypeptide [Culex
quinquefasciatus]
gi|241743332|ref|XP_002412419.1| DNA-directed RNA polymerase [Ixodes scapularis]
gi|340715812|ref|XP_003396402.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Bombus terrestris]
gi|350418055|ref|XP_003491712.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Bombus impatiens]
gi|380019410|ref|XP_003693600.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Apis florea]
gi|383864396|ref|XP_003707665.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Megachile rotundata]
gi|55234923|gb|EAA00426.2| AGAP011761-PA [Anopheles gambiae str. PEST]
gi|80973030|gb|ABB53243.1| DNA-directed RNA polymerase [Ixodes ricinus]
gi|94468736|gb|ABF18217.1| DNA-directed RNA polymerase subunit RPB10 [Aedes aegypti]
gi|108868711|gb|EAT32936.1| AAEL014831-PA [Aedes aegypti]
gi|167863363|gb|EDS26746.1| DNA-directed RNA polymerase II 7.6 kDa polypeptide [Culex
quinquefasciatus]
gi|215505748|gb|EEC15242.1| DNA-directed RNA polymerase [Ixodes scapularis]
gi|307213397|gb|EFN88833.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Harpegnathos saltator]
gi|332025543|gb|EGI65706.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Acromyrmex echinatior]
gi|389609949|dbj|BAM18586.1| RNA polymerase II subunit rpb10 [Papilio xuthus]
gi|427785879|gb|JAA58391.1| Putative dna-directed rna polymerase [Rhipicephalus pulchellus]
Length = 67
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|307110454|gb|EFN58690.1| hypothetical protein CHLNCDRAFT_19532, partial [Chlorella
variabilis]
Length = 75
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/62 (87%), Positives = 60/62 (96%)
Query: 6 RCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 65
RCFTCGKVIGNKW+TYLDLLQA+Y EGDA+DALGL RYCCRRM+MTHVDLIEKLLNYNTL
Sbjct: 1 RCFTCGKVIGNKWETYLDLLQAEYSEGDAMDALGLNRYCCRRMVMTHVDLIEKLLNYNTL 60
Query: 66 DK 67
++
Sbjct: 61 ER 62
>gi|60653741|gb|AAX29564.1| polymerase [synthetic construct]
Length = 68
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|344249447|gb|EGW05551.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Cricetulus griseus]
Length = 109
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 43 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 102
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 103 NYAPLEK 109
>gi|319025576|ref|NP_001187712.1| DNA-directed RNA polymerases i II and III subunit rpabc5
[Ictalurus punctatus]
gi|410912510|ref|XP_003969732.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Takifugu rubripes]
gi|308323771|gb|ADO29021.1| DNA-directed RNA polymerases i II and III subunit rpabc5
[Ictalurus punctatus]
Length = 67
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|10863925|ref|NP_066951.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Homo
sapiens]
gi|62858625|ref|NP_001016343.1| DNA directed RNA polymerase II polypeptide L 1 [Xenopus
(Silurana) tropicalis]
gi|163644265|ref|NP_001106198.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa, gene 1
[Xenopus laevis]
gi|165973962|ref|NP_001107198.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Bos
taurus]
gi|219881031|ref|NP_079869.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Mus
musculus]
gi|219881034|ref|NP_001137383.1| polymerase (RNA) II (DNA directed) polypeptide L [Rattus
norvegicus]
gi|259089470|ref|NP_001158535.1| DNA-directed RNA polymerase II 7.6 kDa polypeptide [Oncorhynchus
mykiss]
gi|350534562|ref|NP_001232628.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Taeniopygia guttata]
gi|388452448|ref|NP_001253928.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Macaca mulatta]
gi|311246998|ref|XP_003122432.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Sus scrofa]
gi|326917791|ref|XP_003205179.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Meleagris gallopavo]
gi|327259993|ref|XP_003214820.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Anolis carolinensis]
gi|348551065|ref|XP_003461351.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cavia porcellus]
gi|354495401|ref|XP_003509819.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cricetulus griseus]
gi|392344762|ref|XP_003749068.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Rattus norvegicus]
gi|395861069|ref|XP_003802816.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Otolemur garnettii]
gi|426366807|ref|XP_004050437.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Gorilla gorilla gorilla]
gi|51316659|sp|Q6QN04.1|RPAB5_CHILA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=DNA-directed RNA polymerase III
subunit L
gi|51338657|sp|P62875.1|RPAB5_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=DNA-directed RNA polymerase III
subunit L; AltName: Full=RNA polymerase II 7.6 kDa
subunit; Short=RPB7.6; AltName: Full=RPB10 homolog
gi|51338658|sp|P62876.1|RPAB5_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=DNA-directed RNA polymerase III
subunit L; AltName: Full=RPB10 homolog
gi|122146105|sp|Q32P78.1|RPAB5_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=DNA-directed RNA polymerase III
subunit L
gi|1017825|gb|AAA91459.1| RNA polymerase II subunit [Homo sapiens]
gi|12846865|dbj|BAB27338.1| unnamed protein product [Mus musculus]
gi|13543492|gb|AAH05903.1| Polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa [Homo
sapiens]
gi|17391429|gb|AAH18649.1| Polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa [Homo
sapiens]
gi|45384750|gb|AAS59418.1| RNA polymerase polypeptide L [Chinchilla lanigera]
gi|49168614|emb|CAG38802.1| POLR2L [Homo sapiens]
gi|61361807|gb|AAX42106.1| polymerase II polypeptide L [synthetic construct]
gi|66911780|gb|AAH97791.1| Polr2l protein [Xenopus laevis]
gi|74207762|dbj|BAE40122.1| unnamed protein product [Mus musculus]
gi|74225948|dbj|BAE28747.1| unnamed protein product [Mus musculus]
gi|81294253|gb|AAI08228.1| POLR2L protein [Bos taurus]
gi|89266960|emb|CAJ82315.1| polymerase (RNA) II (DNA directed) polypeptide L [Xenopus
(Silurana) tropicalis]
gi|123992941|gb|ABM84072.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa
[synthetic construct]
gi|123999861|gb|ABM87439.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa
[synthetic construct]
gi|124000105|gb|ABM87561.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa
[synthetic construct]
gi|148686160|gb|EDL18107.1| mCG23287 [Mus musculus]
gi|149061666|gb|EDM12089.1| rCG48060 [Rattus norvegicus]
gi|189065212|dbj|BAG34935.1| unnamed protein product [Homo sapiens]
gi|197127739|gb|ACH44237.1| putative DNA directed RNA polymerase II polypeptide L variant 1
[Taeniopygia guttata]
gi|197127740|gb|ACH44238.1| putative DNA directed RNA polymerase II polypeptide L variant 2a
[Taeniopygia guttata]
gi|208968665|dbj|BAG74171.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa
[synthetic construct]
gi|209735392|gb|ACI68565.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Salmo
salar]
gi|209735824|gb|ACI68781.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Salmo
salar]
gi|213624160|gb|AAI70726.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa [Xenopus
(Silurana) tropicalis]
gi|213627101|gb|AAI70724.1| polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa [Xenopus
(Silurana) tropicalis]
gi|225704656|gb|ACO08174.1| DNA-directed RNA polymerase II 7.6 kDa polypeptide [Oncorhynchus
mykiss]
gi|225717028|gb|ACO14360.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Esox
lucius]
gi|296471355|tpg|DAA13470.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Bos taurus]
gi|351714902|gb|EHB17821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Heterocephalus glaber]
gi|355566167|gb|EHH22546.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Macaca mulatta]
gi|355751835|gb|EHH55955.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Macaca fascicularis]
gi|384947778|gb|AFI37494.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Macaca mulatta]
gi|417395365|gb|JAA44745.1| Putative dna-directed rna polymerases i ii and iii subunit rpabc5
[Desmodus rotundus]
gi|431910110|gb|ELK13183.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Pteropus alecto]
gi|449274493|gb|EMC83635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Columba livia]
gi|1588297|prf||2208312A RNA polymerase:SUBUNIT=7.6kD
Length = 67
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|449665110|ref|XP_004206069.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Hydra magnipapillata]
Length = 67
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+GNKW++YL LLQA+Y EGDALD+LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWESYLGLLQAEYSEGDALDSLGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|405948007|gb|EKC17916.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Crassostrea gigas]
gi|405965242|gb|EKC30637.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Crassostrea gigas]
Length = 67
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW+ YL LLQ +Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQVEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|332375306|gb|AEE62794.1| unknown [Dendroctonus ponderosae]
Length = 67
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|384492008|gb|EIE83204.1| DNA-directed RNA polymerase I, II, and III subunit RPABC5
[Rhizopus delemar RA 99-880]
Length = 74
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIGNKWD YL L QA+Y EG+ALDALGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGNKWDNYLSLFQAEYTEGEALDALGLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
+YN L++
Sbjct: 61 HYNPLER 67
>gi|63102521|gb|AAH95745.1| Zgc:112305 protein [Danio rerio]
Length = 67
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLPHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|198424087|ref|XP_002128784.1| PREDICTED: similar to MGC146599 protein [Ciona intestinalis]
Length = 67
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+GNKWD YL LLQ +Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGNKWDKYLGLLQQEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|219879833|ref|NP_001137382.1| RNA polymerase II subunit 10 [Nasonia vitripennis]
Length = 67
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW+ YL LLQA+Y EGDALD+LGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDSLGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|218186529|gb|EEC68956.1| hypothetical protein OsI_37684 [Oryza sativa Indica Group]
Length = 114
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 69/113 (61%), Gaps = 42/113 (37%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG---------------------------- 32
MIIPVRCFTCGKVIGNKWD YLDLLQADY EG
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGR 60
Query: 33 --------------DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS 71
DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL+K++T+
Sbjct: 61 RLADGDADLSVHMWDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETA 113
>gi|197127741|gb|ACH44239.1| putative DNA directed RNA polymerase II polypeptide L variant 1
[Taeniopygia guttata]
Length = 67
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCR+ML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRKMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|47230481|emb|CAF99674.1| unnamed protein product [Tetraodon nigroviridis]
Length = 67
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK++GNKW+ YL LLQ++Y EGDALDALGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIVGNKWEAYLRLLQSEYTEGDALDALGLKRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|324574988|gb|ADY49928.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5,
partial [Ascaris suum]
Length = 67
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKWD YL LLQ++Y EGDALDAL L RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWDAYLGLLQSEYTEGDALDALNLRRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ L+K
Sbjct: 61 NYHPLEK 67
>gi|443708172|gb|ELU03417.1| hypothetical protein CAPTEDRAFT_148983 [Capitella teleta]
Length = 67
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+KW+TYL LLQA+Y EGDALD++GL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGDKWETYLGLLQAEYTEGDALDSMGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|328871831|gb|EGG20201.1| RNA polymerase N/8 kDa subunit [Dictyostelium fasciculatum]
Length = 74
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 62/71 (87%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW+TYL+LL ++Y EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWETYLNLLNSEYTEGDALDALNLSRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NY +++ +
Sbjct: 61 NYTPTSENNQA 71
>gi|17509857|ref|NP_490923.1| Protein RPB-10 [Caenorhabditis elegans]
gi|268563452|ref|XP_002638840.1| C. briggsae CBR-RPB-10 protein [Caenorhabditis briggsae]
gi|308498401|ref|XP_003111387.1| CRE-RPB-10 protein [Caenorhabditis remanei]
gi|51702147|sp|Q9GR61.1|RPAB5_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5
gi|296439764|sp|A8Y1E9.1|RPAB5_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5
gi|308240935|gb|EFO84887.1| CRE-RPB-10 protein [Caenorhabditis remanei]
gi|341878203|gb|EGT34138.1| hypothetical protein CAEBREN_13287 [Caenorhabditis brenneri]
gi|341889551|gb|EGT45486.1| hypothetical protein CAEBREN_05454 [Caenorhabditis brenneri]
gi|351051079|emb|CCD73423.1| Protein RPB-10 [Caenorhabditis elegans]
Length = 67
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIG+KW+TYL LQ++Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ L+K
Sbjct: 61 NYHPLEK 67
>gi|193603498|ref|XP_001942802.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Acyrthosiphon pisum]
Length = 67
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVI NKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIANKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|110589602|gb|ABG77305.1| DNA-directed RNA polymerase II [Pimephales promelas]
Length = 66
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLN
Sbjct: 1 IIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLN 60
Query: 62 YNTLDK 67
Y L+K
Sbjct: 61 YAPLEK 66
>gi|339234395|ref|XP_003382314.1| conserved domain protein [Trichinella spiralis]
gi|316978688|gb|EFV61637.1| conserved domain protein [Trichinella spiralis]
Length = 67
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW++YL LLQA+Y EGDALDA+GL RYCCRRM++ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWESYLGLLQAEYSEGDALDAIGLRRYCCRRMVLCHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ + K
Sbjct: 61 NYHPVQK 67
>gi|66823991|ref|XP_645350.1| RNA polymerase N/8 kDa subunit [Dictyostelium discoideum AX4]
gi|74857899|sp|Q55AB6.1|RPAB5_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=RPB10 homolog
gi|60473508|gb|EAL71452.1| RNA polymerase N/8 kDa subunit [Dictyostelium discoideum AX4]
Length = 70
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 57/65 (87%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YL LLQ DY EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTL 65
NY L
Sbjct: 61 NYTPL 65
>gi|342906146|gb|AEL79356.1| DNA-directed RNA polymerase subunit RPB10 [Rhodnius prolixus]
Length = 108
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 44 MIIPVRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 103
Query: 61 NYNTL 65
NY L
Sbjct: 104 NYAPL 108
>gi|209734606|gb|ACI68172.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Salmo
salar]
Length = 67
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGPLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|391344116|ref|XP_003746349.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Metaseiulus occidentalis]
Length = 67
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/67 (77%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGNKW+ YL LLQ++Y EGDA+DALGL RYCCRRML+ HVD+IEKLL
Sbjct: 1 MIIPVRCFTCGKIIGNKWEAYLGLLQSEYTEGDAMDALGLKRYCCRRMLLGHVDMIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|294890817|ref|XP_002773329.1| DNA-directed RNA polymerase subunit N, putative [Perkinsus
marinus ATCC 50983]
gi|294950009|ref|XP_002786415.1| DNA-directed RNA polymerase subunit N, putative [Perkinsus
marinus ATCC 50983]
gi|239878381|gb|EER05145.1| DNA-directed RNA polymerase subunit N, putative [Perkinsus
marinus ATCC 50983]
gi|239900707|gb|EER18211.1| DNA-directed RNA polymerase subunit N, putative [Perkinsus
marinus ATCC 50983]
Length = 69
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/69 (76%), Positives = 58/69 (84%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKWDTYL+LLQ EG AL LG+ RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWDTYLNLLQEGKSEGQALTELGMERYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NYN L+K
Sbjct: 61 NYNILEKRQ 69
>gi|256071993|ref|XP_002572322.1| DNA-directed rna polymerase II subunit n [Schistosoma mansoni]
gi|60687574|gb|AAX30120.1| putative RNA polymerase subunit [Schistosoma japonicum]
gi|226471262|emb|CAX70712.1| DNA-directed RNA Polymerase II subunit L [Schistosoma japonicum]
gi|226471264|emb|CAX70713.1| DNA-directed RNA Polymerase II subunit L [Schistosoma japonicum]
gi|226488100|emb|CAX75715.1| DNA-directed RNA Polymerase II subunit L [Schistosoma japonicum]
gi|226488102|emb|CAX75716.1| DNA-directed RNA Polymerase II subunit L [Schistosoma japonicum]
gi|226488104|emb|CAX75717.1| DNA-directed RNA Polymerase II subunit L [Schistosoma japonicum]
gi|226488106|emb|CAX75718.1| DNA-directed RNA Polymerase II subunit L [Schistosoma japonicum]
gi|353229445|emb|CCD75616.1| putative DNA-directed rna polymerase II, subunit n [Schistosoma
mansoni]
Length = 67
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+G+KW++Y+ LLQA+Y EGDALD LGL RYCCRRML++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYIGLLQAEYAEGDALDTLGLRRYCCRRMLLSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ L +
Sbjct: 61 NYSPLQR 67
>gi|225710752|gb|ACO11222.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Caligus rogercresseyi]
gi|290562948|gb|ADD38868.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Lepeophtheirus salmonis]
Length = 67
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 59/67 (88%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK+IGNKW+ YL LLQA+Y EGDALDALGL R CCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKLIGNKWEAYLGLLQAEYTEGDALDALGLKRPCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYTPLEK 67
>gi|388581544|gb|EIM21852.1| hypothetical protein WALSEDRAFT_37960 [Wallemia sebi CBS 633.66]
Length = 88
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 58/63 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KW+ YLDLLQAD EGDA+D LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDKWEAYLDLLQADITEGDAMDKLGLRRYCCRRMILTHVDLIEKLL 60
Query: 61 NYN 63
NYN
Sbjct: 61 NYN 63
>gi|170571001|ref|XP_001891560.1| DNA-directed RNA polymerase II 7.6 kDa polypeptide [Brugia
malayi]
gi|158603873|gb|EDP39636.1| DNA-directed RNA polymerase II 7.6 kDa polypeptide, putative
[Brugia malayi]
Length = 67
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKWD YL LLQA+Y EGDALDAL L RYCCRRML++HVDLI KLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWDAYLGLLQAEYSEGDALDALNLRRYCCRRMLLSHVDLIVKLL 60
Query: 61 NYNTLDK 67
+Y+ L+K
Sbjct: 61 DYHPLEK 67
>gi|281204763|gb|EFA78958.1| S60 ribosomal protein L32 [Polysphondylium pallidum PN500]
Length = 299
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 50/59 (84%), Positives = 52/59 (88%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCFTCGKVIGNKWD Y+ LL DY EGDALDAL L RYCCRRML+THVDLIEKL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYISLLSNDYSEGDALDALSLKRYCCRRMLLTHVDLIEKL 59
>gi|354497159|ref|XP_003510689.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cricetulus griseus]
gi|344250207|gb|EGW06311.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Cricetulus griseus]
Length = 77
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/69 (75%), Positives = 58/69 (84%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+ EGDALDALGL RYCCR ML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLCLLQAESTEGDALDALGLKRYCCRHMLLAHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
NY L+K
Sbjct: 61 NYAPLEKRS 69
>gi|330802309|ref|XP_003289161.1| hypothetical protein DICPUDRAFT_48405 [Dictyostelium purpureum]
gi|325080784|gb|EGC34325.1| hypothetical protein DICPUDRAFT_48405 [Dictyostelium purpureum]
Length = 203
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 55/61 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YL LLQ +Y EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIEYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 61 N 61
+
Sbjct: 61 S 61
>gi|21912584|emb|CAD21547.1| putative RNA polymerase subunit [Taenia solium]
Length = 67
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 59/67 (88%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+G+KW++YL LLQA+Y E DALD LGL RYCCRRM+++HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVVGDKWESYLVLLQAEYTEADALDTLGLRRYCCRRMILSHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L K
Sbjct: 61 NYAPLQK 67
>gi|213404468|ref|XP_002173006.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001053|gb|EEB06713.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 71
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 58/68 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KWDTYL LLQ D EG+ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
YN L K
Sbjct: 61 CYNPLSKQ 68
>gi|430812850|emb|CCJ29748.1| unnamed protein product [Pneumocystis jirovecii]
Length = 72
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 59/68 (86%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KWD YL LQ D EG+ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWDAYLIYLQEDISEGEALDKLGLKRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
+YN L++S
Sbjct: 61 HYNPLERS 68
>gi|402223275|gb|EJU03340.1| hypothetical protein DACRYDRAFT_65562 [Dacryopinax sp. DJM-731
SS1]
Length = 79
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 60/68 (88%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KW+ Y+ LLQ+D EG+ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDKWEAYMQLLQSDVNEGEALDELGLRRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
NYN ++S
Sbjct: 61 NYNPSERS 68
>gi|19115709|ref|NP_594797.1| DNA-directed RNA polymerase I, II, and III subunit Rpb10
[Schizosaccharomyces pombe 972h-]
gi|3334316|sp|O13877.2|RPAB5_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=ABC10-beta; AltName:
Full=DNA-directed RNA polymerases I, II, and III 8.3
kDa polypeptide; AltName: Full=RPC8
gi|256599724|pdb|3H0G|J Chain J, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599736|pdb|3H0G|V Chain V, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529249|dbj|BAA22805.1| RNA polymerase II subunit Rpb10 [Schizosaccharomyces pombe]
gi|2529431|gb|AAC49842.1| RNA polymerases I-III common subunit Rpb10 [Schizosaccharomyces
pombe]
gi|2625013|gb|AAC16895.1| RNA polymerases I, II and III subunit Rpb10 [Schizosaccharomyces
pombe]
gi|2909613|emb|CAB11246.1| DNA-directed RNA polymerase I, II, and III subunit Rpb10
[Schizosaccharomyces pombe]
gi|7160271|emb|CAA65049.1| DNA-directed RNA polymerase [Schizosaccharomyces pombe]
Length = 71
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 58/68 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKVIG+KWDTYL LLQ D EG+ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
YN L K
Sbjct: 61 CYNPLSKQ 68
>gi|328863853|gb|EGG12952.1| hypothetical protein MELLADRAFT_87167 [Melampsora larici-populina
98AG31]
Length = 72
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 57/67 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+GN WD YL +LQ+ EGDA+DALGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVVGNVWDQYLQILQSGVSEGDAMDALGLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN +K
Sbjct: 61 QYNPYEK 67
>gi|325183363|emb|CCA17825.1| predicted protein putative [Albugo laibachii Nc14]
Length = 72
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 57/64 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV+ NKW+TYL LL+ADY E DALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVLANKWETYLGLLRADYTERDALDELALKRYCCRRMMLTHVDLIEKLL 60
Query: 61 NYNT 64
+YNT
Sbjct: 61 HYNT 64
>gi|354477423|ref|XP_003500920.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cricetulus griseus]
gi|344244987|gb|EGW01091.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Cricetulus griseus]
Length = 84
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 55/64 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++ NKW+ YL LLQA+Y EGDALDALGL RYCCR ML+ HVDLIEKL
Sbjct: 1 MIIPVRCFTCGKIVSNKWEAYLGLLQAEYTEGDALDALGLKRYCCRSMLLAHVDLIEKLP 60
Query: 61 NYNT 64
NY +
Sbjct: 61 NYAS 64
>gi|348673006|gb|EGZ12825.1| hypothetical protein PHYSODRAFT_286504 [Phytophthora sojae]
Length = 72
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 57/64 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKV+ NKW+TYL LL+ADY E DALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVLANKWETYLGLLRADYTERDALDELSLKRYCCRRMMLTHVDLIEKLL 60
Query: 61 NYNT 64
+YNT
Sbjct: 61 HYNT 64
>gi|210075220|ref|XP_002143005.1| YALI0B04851p [Yarrowia lipolytica]
gi|199425138|emb|CAR64282.1| YALI0B04851p [Yarrowia lipolytica CLIB122]
Length = 105
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KW+TYL LQ D EGDALD L L RYCCRRM++THVDLIEK L
Sbjct: 35 MIIPVRCFSCGKVVGDKWETYLTYLQDDMSEGDALDKLELKRYCCRRMILTHVDLIEKFL 94
Query: 61 NYNTLDKS 68
YNTL+K
Sbjct: 95 RYNTLEKK 102
>gi|134037062|gb|ABO47871.1| DNA-directed RNA polymerase [Alexandrium fundyense]
Length = 82
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RC++CGK+IGNKW+ YL +LQ++ E + LDALGL RYCCRRML+THVDLIEK++
Sbjct: 1 MIIPIRCYSCGKLIGNKWERYLQMLQSEMSEKEVLDALGLNRYCCRRMLLTHVDLIEKVM 60
Query: 61 NYNTLDKSDTS 71
NYN +K S
Sbjct: 61 NYNIYEKRGLS 71
>gi|409078039|gb|EKM78403.1| hypothetical protein AGABI1DRAFT_86027 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426194038|gb|EKV43970.1| hypothetical protein AGABI2DRAFT_138476 [Agaricus bisporus var.
bisporus H97]
Length = 76
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW+ YLDLL D EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLDLLSKDMSEGDALDELQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
+YN ++S
Sbjct: 61 HYNPNERS 68
>gi|160330961|ref|XP_001712188.1| rpb10 [Hemiselmis andersenii]
gi|159765635|gb|ABW97863.1| rpb10 [Hemiselmis andersenii]
Length = 80
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 57/67 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK+IGNKWD Y++LL + + ALD+LGL RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIIGNKWDIYIELLNKNISQSAALDSLGLRRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YNT +K
Sbjct: 61 AYNTHEK 67
>gi|354547616|emb|CCE44351.1| hypothetical protein CPAR2_401530 [Candida parapsilosis]
Length = 72
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+LLQ PEG+AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLELLQDESMPEGEALTKLGLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K + +
Sbjct: 61 LRYNPLEKKEIN 72
>gi|170099666|ref|XP_001881051.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643730|gb|EDR07981.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 75
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 58/68 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW YL+LL D EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWSAYLELLAKDVSEGDALDELQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
+YN ++++
Sbjct: 61 HYNPMERT 68
>gi|448529653|ref|XP_003869879.1| Rpb10 protein [Candida orthopsilosis Co 90-125]
gi|380354233|emb|CCG23746.1| Rpb10 protein [Candida orthopsilosis]
Length = 72
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+LLQ + PEG+ALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLELLQDESMPEGEALDKLQLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K + +
Sbjct: 61 LRYNPLEKKEIN 72
>gi|162605804|ref|XP_001713417.1| Putative RNA polymerase II subunit Rpb10 [Guillardia theta]
gi|13794349|gb|AAK39726.1|AF083031_83 Putative RNA polymerase II subunit Rpb10 [Guillardia theta]
Length = 71
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 53/63 (84%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGNKW+ YL LL +Y E ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIIGNKWEIYLRLLNENYSESSALDTLGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYN 63
YN
Sbjct: 61 QYN 63
>gi|254568006|ref|XP_002491113.1| RNA polymerase subunit ABC10-beta, common to RNA polymerases I,
II, and III [Komagataella pastoris GS115]
gi|238030910|emb|CAY68833.1| RNA polymerase subunit ABC10-beta, common to RNA polymerases I,
II, and III [Komagataella pastoris GS115]
gi|328352360|emb|CCA38759.1| DNA-directed RNA Polymerase II subunit L [Komagataella pastoris
CBS 7435]
Length = 72
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 56/69 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KWD YL LL+ EGDALD L L RYCCRRM++THVDLIEK L
Sbjct: 1 MIIPVRCFSCGKVVGDKWDAYLRLLEEGKQEGDALDELKLKRYCCRRMVLTHVDLIEKFL 60
Query: 61 NYNTLDKSD 69
YN L+K D
Sbjct: 61 RYNPLEKKD 69
>gi|344228654|gb|EGV60540.1| DNA-directed RNA polymerase II subunit L [Candida tenuis ATCC
10573]
Length = 72
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYLDLLQ + EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLDLLQDENITEGDALDQLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K D +
Sbjct: 61 LRYNPLEKKDIN 72
>gi|392558652|gb|EIW51839.1| hypothetical protein TRAVEDRAFT_40930 [Trametes versicolor
FP-101664 SS1]
Length = 74
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 58/67 (86%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KW+ YL+LL D PEGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDKWNAYLELLANDIPEGDALDQLQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
+YN ++
Sbjct: 61 HYNPNER 67
>gi|336388789|gb|EGO29933.1| hypothetical protein SERLADRAFT_365925 [Serpula lacrymans var.
lacrymans S7.9]
Length = 74
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 59/68 (86%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW+ YL+LL D EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLELLANDMSEGDALDELQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
+YN ++++
Sbjct: 61 HYNPMERT 68
>gi|399950042|gb|AFP65698.1| RNA polymerase II subunit [Chroomonas mesostigmatica CCMP1168]
Length = 76
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 53/64 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF CGKVI NKW+ Y+DLL + + ALDALGL RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFACGKVIANKWNIYVDLLNQQFSQSAALDALGLRRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNT 64
YNT
Sbjct: 61 AYNT 64
>gi|392588881|gb|EIW78212.1| hypothetical protein CONPUDRAFT_91730 [Coniophora puteana
RWD-64-598 SS2]
Length = 73
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 58/68 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW YL+LL D EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWTAYLELLANDMSEGDALDNLQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
+YN +++S
Sbjct: 61 HYNPMERS 68
>gi|403221817|dbj|BAM39949.1| DNA-directed RNA polymerase subunit RPB10 [Theileria orientalis
strain Shintoku]
Length = 79
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 59/71 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+ W+ +L++L+ + PEG ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGHLWEKWLEMLKKNTPEGKALDELGLTRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YNT ++ S
Sbjct: 61 VYNTKSRNVMS 71
>gi|429327340|gb|AFZ79100.1| DNA-directed RNA polymerase II, subunit N/8 kDa, putative
[Babesia equi]
Length = 73
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 58/71 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+ W+ +L++L+ + PEG ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGHLWEKWLEMLKENVPEGQALDDLGLTRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YN DK +
Sbjct: 61 VYNIYDKRNPE 71
>gi|71030322|ref|XP_764803.1| DNA-directed RNA polymerase subunit N [Theileria parva strain
Muguga]
gi|68351759|gb|EAN32520.1| DNA-directed RNA polymerase subunit N, putative [Theileria parva]
Length = 87
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+ W+ +L++L+ D PEG ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGHLWEKWLEMLKKDIPEGQALDDLGLTRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNT 64
YN+
Sbjct: 61 VYNS 64
>gi|169610481|ref|XP_001798659.1| hypothetical protein SNOG_08339 [Phaeosphaeria nodorum SN15]
gi|160702078|gb|EAT84615.2| hypothetical protein SNOG_08339 [Phaeosphaeria nodorum SN15]
Length = 77
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 57/70 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCF+CGKV+G+ W+ Y+DLL + EGDALDA+GL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPIRCFSCGKVVGDLWEKYMDLLTEEMAEGDALDAIGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKSDT 70
YN ++
Sbjct: 61 KYNASEREQA 70
>gi|50427511|ref|XP_462368.1| DEHA2G19052p [Debaryomyces hansenii CBS767]
gi|49658038|emb|CAG90875.1| DEHA2G19052p [Debaryomyces hansenii CBS767]
Length = 72
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCF+CGKV+G+KW+TYL+ LQ D EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPVRCFSCGKVVGDKWETYLEYLQDDTMTEGDALDKLKLQRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K D +
Sbjct: 61 LRYNPLEKKDVN 72
>gi|443921621|gb|ELU41201.1| RNA polymerases N domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 103
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 58/67 (86%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCFTCGKVIG+KW+ Y+ LL+ D EGDA+D LGL RYCCRRM++THVDLIEKLL
Sbjct: 29 IIPVRCFTCGKVIGDKWEDYVKLLRDDVTEGDAMDQLGLKRYCCRRMVLTHVDLIEKLLQ 88
Query: 62 YNTLDKS 68
YN ++++
Sbjct: 89 YNPMERT 95
>gi|255721131|ref|XP_002545500.1| DNA-directed RNA polymerases II subunit [Candida tropicalis
MYA-3404]
gi|240135989|gb|EER35542.1| DNA-directed RNA polymerases II subunit [Candida tropicalis
MYA-3404]
Length = 72
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+LLQ + EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLELLQDETISEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L++ D +
Sbjct: 61 LRYNPLERKDVN 72
>gi|389748047|gb|EIM89225.1| hypothetical protein STEHIDRAFT_53519, partial [Stereum hirsutum
FP-91666 SS1]
Length = 77
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 58/67 (86%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKVIG+KW+ YL+LL D EG+ALD L L RYCCRRM++THVDLIEKLL+
Sbjct: 1 IIPVRCFSCGKVIGDKWNAYLELLSQDKSEGEALDELQLKRYCCRRMVLTHVDLIEKLLH 60
Query: 62 YNTLDKS 68
YN ++++
Sbjct: 61 YNPMERT 67
>gi|330038805|ref|XP_003239706.1| RNA polymerase II subunit [Cryptomonas paramecium]
gi|327206630|gb|AEA38808.1| RNA polymerase II subunit [Cryptomonas paramecium]
Length = 74
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 55/66 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK++GNKW+ YL+LL ++ E ALD L L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKIVGNKWNHYLELLNQNFSESVALDMLELKRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTLD 66
YNT D
Sbjct: 61 AYNTHD 66
>gi|344305164|gb|EGW35396.1| DNA-directed RNA polymerase II subunit L [Spathaspora
passalidarum NRRL Y-27907]
Length = 72
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCF+CGKV+G+KW+TYL+ LQ + EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPVRCFSCGKVVGDKWETYLEYLQDEAMTEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K + S
Sbjct: 61 LRYNPLEKKEIS 72
>gi|241954462|ref|XP_002419952.1| DNA-directed RNA polymerases I/II/III subunit, putative;
polypeptide common to RNA polymerases I, II and III,
putative [Candida dubliniensis CD36]
gi|223643293|emb|CAX42167.1| DNA-directed RNA polymerases I/II/III subunit, putative [Candida
dubliniensis CD36]
gi|238881543|gb|EEQ45181.1| DNA-directed RNA polymerases I/II/III subunit 10 [Candida
albicans WO-1]
Length = 72
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW TYLD LQ + EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWQTYLDYLQDETLSEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K D +
Sbjct: 61 LRYNPLEKKDIN 72
>gi|226295021|gb|EEH50441.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily protein
[Paracoccidioides brasiliensis Pb18]
Length = 173
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 100 MIIPVRCFSCGKVVGDLWERYLKLLDEGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 159
Query: 61 NYNTLDK 67
YN ++
Sbjct: 160 RYNPAER 166
>gi|209877981|ref|XP_002140432.1| DNA-directed RNA polymerases I, II, and III subunit ABC5
[Cryptosporidium muris RN66]
gi|209556038|gb|EEA06083.1| DNA-directed RNA polymerases I, II, and III subunit ABC5,
putative [Cryptosporidium muris RN66]
Length = 72
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/68 (72%), Positives = 54/68 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGN W +L LLQ D EG+ALD LGL RYCCRRM++TH DLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNLWQQWLVLLQNDVSEGEALDKLGLRRYCCRRMVLTHADLIEKLL 60
Query: 61 NYNTLDKS 68
YN +K
Sbjct: 61 AYNIHEKK 68
>gi|126649024|ref|XP_001388074.1| DNA-directed RNA polymerases I, II, and III 8.3 kda polypeptide
[Cryptosporidium parvum Iowa II]
gi|126117162|gb|EAZ51262.1| putative DNA-directed RNA polymerases I, II, and III 8.3 kda
polypeptide [Cryptosporidium parvum Iowa II]
Length = 72
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGN W +L LLQ + PEG+ALD LGL RYCCRRM++TH DLIEKL+
Sbjct: 1 MIIPVRCFTCGKVIGNLWQPWLVLLQNNVPEGEALDKLGLRRYCCRRMILTHADLIEKLM 60
Query: 61 NYNTLDKS 68
YN ++
Sbjct: 61 AYNIHERK 68
>gi|399219042|emb|CCF75929.1| unnamed protein product [Babesia microti strain RI]
Length = 79
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 54/64 (84%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCFTCGKVIGN W+ +LD L D PEG ALD LGL RYCCRRM++THVDLI+KLL
Sbjct: 1 MIVPIRCFTCGKVIGNLWNKWLDKLSRDIPEGQALDELGLSRYCCRRMILTHVDLIDKLL 60
Query: 61 NYNT 64
YN+
Sbjct: 61 AYNS 64
>gi|449502133|ref|XP_004174489.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Taeniopygia guttata]
Length = 67
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 55/67 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ +L + +GDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAFLGSCRRSTRKGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>gi|398365775|ref|NP_014853.3| Rpb10p [Saccharomyces cerevisiae S288c]
gi|417696|sp|P22139.2|RPAB5_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=ABC10-beta; AltName: Full=ABC8;
AltName: Full=DNA-directed RNA polymerases I, II, and
III 8.3 kDa polypeptide
gi|14278331|pdb|1I3Q|J Chain J, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278342|pdb|1I50|J Chain J, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278372|pdb|1I6H|J Chain J, Rna Polymerase Ii Elongation Complex
gi|20150720|pdb|1K83|J Chain J, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749625|pdb|1NIK|J Chain J, Wild Type Rna Polymerase Ii
gi|30749746|pdb|1NT9|J Chain J, Complete 12-Subunit Rna Polymerase Ii
gi|34810562|pdb|1PQV|J Chain J, Rna Polymerase Ii-Tfiis Complex
gi|46015422|pdb|1R5U|J Chain J, Rna Polymerase Ii Tfiib Complex
gi|46015787|pdb|1SFO|J Chain J, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965918|pdb|1R9S|J Chain J, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965930|pdb|1R9T|J Chain J, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966114|pdb|1TWA|J Chain J, Rna Polymerase Ii Complexed With Atp
gi|56966128|pdb|1TWC|J Chain J, Rna Polymerase Ii Complexed With Gtp
gi|56966138|pdb|1TWF|J Chain J, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966148|pdb|1TWG|J Chain J, Rna Polymerase Ii Complexed With Ctp
gi|56966158|pdb|1TWH|J Chain J, Rna Polymerase Ii Complexed With 2'datp
gi|58177173|pdb|1WCM|J Chain J, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679453|pdb|1Y1W|J Chain J, Complete Rna Polymerase Ii Elongation Complex
gi|61679470|pdb|1Y77|J Chain J, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679511|pdb|1Y1V|J Chain J, Refined Rna Polymerase Ii-tfiis Complex
gi|61679524|pdb|1Y1Y|J Chain J, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754252|pdb|2B63|J Chain J, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590863|pdb|2B8K|J Chain J, 12-Subunit Rna Polymerase Ii
gi|122920068|pdb|2E2H|J Chain J, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With
Gtp
gi|122920083|pdb|2E2I|J Chain J, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dgtp
gi|122920098|pdb|2E2J|J Chain J, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921037|pdb|2NVQ|J Chain J, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921073|pdb|2NVT|J Chain J, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921089|pdb|2NVX|J Chain J, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dutp
gi|122921104|pdb|2NVY|J Chain J, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921116|pdb|2NVZ|J Chain J, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104683|pdb|2JA5|J Chain J, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex A
gi|134104698|pdb|2JA6|J Chain J, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex B
gi|134104719|pdb|2JA7|J Chain J, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104731|pdb|2JA7|V Chain V, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104743|pdb|2JA8|J Chain J, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex D
gi|146387191|pdb|2YU9|J Chain J, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877782|pdb|2R7Z|J Chain J, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172236|pdb|2R92|J Chain J, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172249|pdb|2R93|J Chain J, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613471|pdb|2VUM|J Chain J, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368741|pdb|3CQZ|J Chain J, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983599|pdb|3FKI|J Chain J, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781923|pdb|3GTG|J Chain J, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781936|pdb|3GTJ|J Chain J, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781949|pdb|3GTK|J Chain J, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781962|pdb|3GTL|J Chain J, Backtracked Rna Polymerase Ii Complex With 13mer With
G<>u Mismatch
gi|239781975|pdb|3GTM|J Chain J, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781989|pdb|3GTO|J Chain J, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782002|pdb|3GTP|J Chain J, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782015|pdb|3GTQ|J Chain J, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104520|pdb|3H3V|K Chain K, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839450|pdb|3HOU|J Chain J, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839465|pdb|3HOU|V Chain V, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839480|pdb|3HOV|J Chain J, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839495|pdb|3HOW|J Chain J, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839510|pdb|3HOX|J Chain J, Complete Rna Polymerase Ii Elongation Complex V
gi|254839525|pdb|3HOY|J Chain J, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839540|pdb|3HOZ|J Chain J, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471955|pdb|3I4M|J Chain J, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471970|pdb|3I4N|J Chain J, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618774|pdb|3K1F|J Chain J, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914559|pdb|3K7A|J Chain J, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982482|pdb|3M3Y|J Chain J, Rna Polymerase Ii Elongation Complex C
gi|295982495|pdb|3M4O|J Chain J, Rna Polymerase Ii Elongation Complex B
gi|325053972|pdb|3PO2|J Chain J, Arrested Rna Polymerase Ii Elongation Complex
gi|325053987|pdb|3PO3|J Chain J, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634547|pdb|3QT1|J Chain J, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197463|pdb|3RZD|J Chain J, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197475|pdb|3RZO|J Chain J, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197487|pdb|3S14|J Chain J, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197499|pdb|3S15|J Chain J, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197511|pdb|3S16|J Chain J, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197523|pdb|3S17|J Chain J, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197535|pdb|3S1M|J Chain J, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197547|pdb|3S1N|J Chain J, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197559|pdb|3S1Q|J Chain J, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Atp
gi|343197571|pdb|3S1R|J Chain J, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Gtp
gi|343197583|pdb|3S2D|J Chain J, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781204|pdb|3S2H|J Chain J, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251642|pdb|3J0K|J Chain J, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380845|pdb|4A3C|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid
gi|359546299|pdb|4A3B|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid
gi|359546317|pdb|4A3D|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid
gi|359546334|pdb|4A3E|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546351|pdb|4A3F|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546368|pdb|4A3J|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546385|pdb|4A3K|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid
gi|359546401|pdb|4A3L|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546418|pdb|4A3M|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977888|pdb|4A3G|J Chain J, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid
gi|374977903|pdb|4A3I|J Chain J, Rna Polymerase Ii Binary Complex With Dna
gi|380764988|pdb|4A93|J Chain J, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145455|pdb|4BBR|J Chain J, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145468|pdb|4BBS|J Chain J, Structure Of An Initially Transcribing Rna Polymerase
Ii- Tfiib Complex
gi|295635|gb|AAB59318.1| subunit ABC10beta [Saccharomyces cerevisiae]
gi|385569|gb|AAB27020.1| RNA polymerase II subunit RPB10 [Saccharomyces cerevisiae]
gi|1420491|emb|CAA99425.1| RPB10 [Saccharomyces cerevisiae]
gi|45270756|gb|AAS56759.1| YOR210W [Saccharomyces cerevisiae]
gi|151945300|gb|EDN63543.1| ABC10-beta [Saccharomyces cerevisiae YJM789]
gi|190407520|gb|EDV10787.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
gi|256269577|gb|EEU04859.1| Rpb10p [Saccharomyces cerevisiae JAY291]
gi|285815089|tpg|DAA10982.1| TPA: Rpb10p [Saccharomyces cerevisiae S288c]
gi|349581367|dbj|GAA26525.1| K7_Rpb10p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296538|gb|EIW07640.1| Rpb10p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|401623552|gb|EJS41648.1| rpb10p [Saccharomyces arboricola H-6]
gi|401839374|gb|EJT42629.1| RPB10-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 70
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW++YL+LLQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|156843936|ref|XP_001645033.1| hypothetical protein Kpol_1072p45 [Vanderwaltozyma polyspora DSM
70294]
gi|156115688|gb|EDO17175.1| hypothetical protein Kpol_1072p45 [Vanderwaltozyma polyspora DSM
70294]
Length = 70
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW++YL++LQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNMLQEDELDEGTALSRLGLTRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|448099424|ref|XP_004199144.1| Piso0_002554 [Millerozyma farinosa CBS 7064]
gi|448103259|ref|XP_004199995.1| Piso0_002554 [Millerozyma farinosa CBS 7064]
gi|359380566|emb|CCE82807.1| Piso0_002554 [Millerozyma farinosa CBS 7064]
gi|359381417|emb|CCE81876.1| Piso0_002554 [Millerozyma farinosa CBS 7064]
Length = 72
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+ LQ D EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDDTMTEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K + +
Sbjct: 61 LRYNPLEKKEMN 72
>gi|146414706|ref|XP_001483323.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146391796|gb|EDK39954.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 72
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+ LQ D EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDDTMTEGDALDKLKLRRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K +
Sbjct: 61 LRYNPLEKKE 70
>gi|109471543|ref|XP_001063101.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Rattus norvegicus]
gi|392339770|ref|XP_003753898.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Rattus norvegicus]
Length = 67
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPV CFTCGK+IGNKW+ YL LLQA Y EGDALD L L RYCCR ML+ H DLIEKLL
Sbjct: 1 MIIPVCCFTCGKIIGNKWEAYLGLLQAMYTEGDALDTLDLKRYCCRCMLLAHADLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYALLEK 67
>gi|326435705|gb|EGD81275.1| DNA-directed RNA polymerase I [Salpingoeca sp. ATCC 50818]
Length = 69
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 56/69 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIGNK+ +L + A+Y E ALD +GL RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGNKYKRFLGFVDAEYGESKALDEVGLKRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
Y+ L++ D
Sbjct: 61 EYSALEQRD 69
>gi|302309855|ref|XP_002999587.1| hypothetical protein [Candida glabrata CBS 138]
gi|365986761|ref|XP_003670212.1| hypothetical protein NDAI_0E01530 [Naumovozyma dairenensis CBS
421]
gi|366989717|ref|XP_003674626.1| hypothetical protein NCAS_0B01680 [Naumovozyma castellii CBS
4309]
gi|367003449|ref|XP_003686458.1| hypothetical protein TPHA_0G01880 [Tetrapisispora phaffii CBS
4417]
gi|410082465|ref|XP_003958811.1| hypothetical protein KAFR_0H02670 [Kazachstania africana CBS
2517]
gi|196049184|emb|CAR58060.1| unnamed protein product [Candida glabrata]
gi|342300490|emb|CCC68252.1| hypothetical protein NCAS_0B01680 [Naumovozyma castellii CBS
4309]
gi|343768982|emb|CCD24969.1| hypothetical protein NDAI_0E01530 [Naumovozyma dairenensis CBS
421]
gi|357524759|emb|CCE64024.1| hypothetical protein TPHA_0G01880 [Tetrapisispora phaffii CBS
4417]
gi|372465400|emb|CCF59676.1| hypothetical protein KAFR_0H02670 [Kazachstania africana CBS
2517]
Length = 70
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW++YL++LQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNMLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|126274455|ref|XP_001387551.1| DNA-directed RNA Polymerase II subunit L [Scheffersomyces
stipitis CBS 6054]
gi|126213421|gb|EAZ63528.1| DNA-directed RNA Polymerase II subunit L [Scheffersomyces
stipitis CBS 6054]
Length = 72
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+ LQ + EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDESMTEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K + +
Sbjct: 61 LRYNPLEKKEIN 72
>gi|156088307|ref|XP_001611560.1| RNA polymerases N / 8 kDa subunit family protein [Babesia bovis]
gi|154798814|gb|EDO07992.1| RNA polymerases N / 8 kDa subunit family protein [Babesia bovis]
Length = 73
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 57/71 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIG+ W+ +L+LL+ + EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGHLWEQWLELLKQNVNEGDALDRLDLTRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YN DK +
Sbjct: 61 VYNIYDKRNQE 71
>gi|149237064|ref|XP_001524409.1| DNA-directed RNA polymerases I/II/III subunit 10 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451944|gb|EDK46200.1| DNA-directed RNA polymerases I/II/III subunit 10 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 72
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+KW+TYL+ LQ + EGDALD L L RYCCRRM++THVDLIEK
Sbjct: 1 MIIPIRCFSCGKVVGDKWETYLEYLQDETMTEGDALDKLKLKRYCCRRMVLTHVDLIEKF 60
Query: 60 LNYNTLDKSDTS 71
L YN L+K + +
Sbjct: 61 LRYNPLEKKEIN 72
>gi|58263334|ref|XP_569077.1| DNA-directed RNA polymerases i, ii, and iii 8.3 kda polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gi|134108642|ref|XP_776974.1| hypothetical protein CNBB5020 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259657|gb|EAL22327.1| hypothetical protein CNBB5020 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223727|gb|AAW41770.1| DNA-directed RNA polymerases i, ii, and iii 8.3 kda polypeptide,
putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 69
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIGN WD+YL+LL A EG+A+D L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGNLWDSYLELLAAGVDEGEAMDKLQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN L +
Sbjct: 61 MYNPLAR 67
>gi|395323259|gb|EJF55740.1| hypothetical protein DICSQDRAFT_73028, partial [Dichomitus
squalens LYAD-421 SS1]
Length = 81
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKV+G+KW YLDLL D EGDALD L L RYCCRRM++THVDLIEKLL+
Sbjct: 1 IIPVRCFSCGKVVGDKWTAYLDLLAKDISEGDALDQLQLKRYCCRRMVLTHVDLIEKLLH 60
Query: 62 YN 63
YN
Sbjct: 61 YN 62
>gi|320166329|gb|EFW43228.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 70
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI PVRCFTCGKV GNK++ Y+ LL Q EGDALDAL L RYCCRRM+++HVDLIEKL
Sbjct: 1 MITPVRCFTCGKVTGNKYEAYITLLAQQTISEGDALDALRLKRYCCRRMILSHVDLIEKL 60
Query: 60 LNYNTLDKSD 69
L YN D+SD
Sbjct: 61 LRYNVQDRSD 70
>gi|449547819|gb|EMD38786.1| hypothetical protein CERSUDRAFT_47056, partial [Ceriporiopsis
subvermispora B]
Length = 75
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
IIPVRCF+CGKVIG+KW+ YL+LL D EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 QIIPVRCFSCGKVIGDKWNHYLELLSKDVSEGDALDQLQLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYN 63
+YN
Sbjct: 61 HYN 63
>gi|255954853|ref|XP_002568179.1| Pc21g11480 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589890|emb|CAP96045.1| Pc21g11480 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425772876|gb|EKV11257.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Penicillium digitatum Pd1]
gi|425778678|gb|EKV16786.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Penicillium digitatum PHI26]
Length = 74
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 56/71 (78%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGVPDGDAMDQLGCRRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YN+ +K +
Sbjct: 61 RYNSAEKDRSK 71
>gi|255713732|ref|XP_002553148.1| KLTH0D10076p [Lachancea thermotolerans]
gi|444316222|ref|XP_004178768.1| hypothetical protein TBLA_0B04110 [Tetrapisispora blattae CBS
6284]
gi|238934528|emb|CAR22710.1| KLTH0D10076p [Lachancea thermotolerans CBS 6340]
gi|387511808|emb|CCH59249.1| hypothetical protein TBLA_0B04110 [Tetrapisispora blattae CBS
6284]
Length = 70
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW+ YL++LQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|403217733|emb|CCK72226.1| hypothetical protein KNAG_0J01450 [Kazachstania naganishii CBS
8797]
Length = 70
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLTRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|212546131|ref|XP_002153219.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Talaromyces marneffei ATCC 18224]
gi|210064739|gb|EEA18834.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Talaromyces marneffei ATCC 18224]
Length = 74
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 55/71 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDEGVPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YN+ ++
Sbjct: 61 RYNSSEREKAK 71
>gi|357631136|gb|EHJ78807.1| Ab1-108 [Danaus plexippus]
Length = 55
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 50/55 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDL 55
MIIPVRCFTCGKVIGNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDL
Sbjct: 1 MIIPVRCFTCGKVIGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDL 55
>gi|50306767|ref|XP_453359.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642493|emb|CAH00455.1| KLLA0D06699p [Kluyveromyces lactis]
Length = 70
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELEEGTALTRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|290983192|ref|XP_002674313.1| predicted protein [Naegleria gruberi]
gi|284087902|gb|EFC41569.1| predicted protein [Naegleria gruberi]
Length = 74
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 56/69 (81%), Gaps = 5/69 (7%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YL LL ++ AL+ LGL RYCCRRML+THV+LIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDKYLQLLNSE-----ALNTLGLKRYCCRRMLLTHVELIEKLL 55
Query: 61 NYNTLDKSD 69
YNT DK +
Sbjct: 56 LYNTTDKDE 64
>gi|254583800|ref|XP_002497468.1| ZYRO0F06226p [Zygosaccharomyces rouxii]
gi|367009230|ref|XP_003679116.1| hypothetical protein TDEL_0A05730 [Torulaspora delbrueckii]
gi|238940361|emb|CAR28535.1| ZYRO0F06226p [Zygosaccharomyces rouxii]
gi|359746773|emb|CCE89905.1| hypothetical protein TDEL_0A05730 [Torulaspora delbrueckii]
Length = 70
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW++YL++LQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNMLQEDELDEGTALTKLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L++ D
Sbjct: 61 LRYNPLERRD 70
>gi|390598771|gb|EIN08168.1| hypothetical protein PUNSTDRAFT_68558, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 70
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKVIG+KW Y+ LL+ +Y EGDALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 IIPVRCFSCGKVIGDKWTRYIKLLEDEYSEGDALDELQLKRYCCRRMVLTHVDLIEKLLQ 60
Query: 62 YNTLD 66
YN +
Sbjct: 61 YNRMS 65
>gi|45185849|ref|NP_983565.1| ACR163Wp [Ashbya gossypii ATCC 10895]
gi|363756384|ref|XP_003648408.1| hypothetical protein Ecym_8313 [Eremothecium cymbalariae
DBVPG#7215]
gi|51701980|sp|Q75BV8.1|RPAB5_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=RPB10
gi|44981639|gb|AAS51389.1| ACR163Wp [Ashbya gossypii ATCC 10895]
gi|356891608|gb|AET41591.1| Hypothetical protein Ecym_8313 [Eremothecium cymbalariae
DBVPG#7215]
gi|374106771|gb|AEY95680.1| FACR163Wp [Ashbya gossypii FDAG1]
Length = 70
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>gi|261195851|ref|XP_002624329.1| DNA-directed RNA polymerase N/8 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|295668419|ref|XP_002794758.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225678629|gb|EEH16913.1| DNA-directed RNA polymerases I/II/III subunit 10
[Paracoccidioides brasiliensis Pb03]
gi|226285451|gb|EEH41017.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Paracoccidioides sp. 'lutzii' Pb01]
gi|239587462|gb|EEQ70105.1| DNA-directed RNA polymerase N/8 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239614414|gb|EEQ91401.1| DNA-directed RNA polymerase N/8 kDa subunit [Ajellomyces
dermatitidis ER-3]
gi|327351421|gb|EGE80278.1| DNA-directed RNA polymerase N/8 kDa subunit superfamily protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 74
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLKLLDEGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPAER 67
>gi|452823251|gb|EME30263.1| DNA-directed RNA Polymerase II subunit L [Galdieria sulphuraria]
Length = 73
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCFTCGKVIGNK++ Y+ LL DY E ALD LGL RYCCRRML+THVDLIEKL
Sbjct: 1 MIIPVRCFTCGKVIGNKYEQYVKLLNDKDYTECQALDELGLKRYCCRRMLLTHVDLIEKL 60
Query: 60 LNYNTLDK 67
L YN D+
Sbjct: 61 LAYNIADR 68
>gi|242824300|ref|XP_002488230.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Talaromyces stipitatus ATCC 10500]
gi|218713151|gb|EED12576.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Talaromyces stipitatus ATCC 10500]
Length = 74
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 55/71 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGVPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
YN+ ++
Sbjct: 61 RYNSSEREKAK 71
>gi|393232575|gb|EJD40155.1| hypothetical protein AURDEDRAFT_33430, partial [Auricularia
delicata TFB-10046 SS5]
Length = 62
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKVIG+KW YL+LL D EGDA+ LGL RYCCRRM++THVDLIEKLL+
Sbjct: 1 IIPVRCFSCGKVIGDKWGRYLELLATDQSEGDAMTELGLRRYCCRRMILTHVDLIEKLLH 60
Query: 62 YN 63
YN
Sbjct: 61 YN 62
>gi|119489458|ref|XP_001262893.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Neosartorya fischeri NRRL 181]
gi|121709043|ref|XP_001272288.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Aspergillus clavatus NRRL 1]
gi|119400437|gb|EAW10862.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Aspergillus clavatus NRRL 1]
gi|119411051|gb|EAW20996.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Neosartorya fischeri NRRL 181]
Length = 74
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDEGIPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPAER 67
>gi|405118291|gb|AFR93065.1| hypothetical protein CNAG_06734 [Cryptococcus neoformans var.
grubii H99]
Length = 85
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 55/66 (83%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKVIGN WD+YL+LL A EG+A+D L L RYCCRRM++THVDLIEKLL
Sbjct: 18 IIPVRCFSCGKVIGNLWDSYLELLAAGVDEGEAMDKLQLKRYCCRRMVLTHVDLIEKLLM 77
Query: 62 YNTLDK 67
YN L +
Sbjct: 78 YNPLAR 83
>gi|328769982|gb|EGF80025.1| hypothetical protein BATDEDRAFT_12135 [Batrachochytrium
dendrobatidis JAM81]
Length = 69
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KW YL LLQ D EG ALDALGL RYCCRRM+++H+D IEK+L
Sbjct: 1 MIIPVRCFSCGKVVGDKWQPYLSLLQGDTTEGKALDALGLKRYCCRRMVLSHIDFIEKIL 60
Query: 61 NY 62
Y
Sbjct: 61 QY 62
>gi|315047570|ref|XP_003173160.1| DNA-directed RNA polymerase N/8 kDa subunit superfamily protein
[Arthroderma gypseum CBS 118893]
gi|311343546|gb|EFR02749.1| DNA-directed RNA polymerase N/8 kDa subunit superfamily protein
[Arthroderma gypseum CBS 118893]
Length = 74
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLRLLDEGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPAER 67
>gi|327306425|ref|XP_003237904.1| DNA-directed RNA polymerases I/II/III subunit RPB10 [Trichophyton
rubrum CBS 118892]
gi|326460902|gb|EGD86355.1| DNA-directed RNA polymerase N/8 kDa subunit superfamily protein
[Trichophyton rubrum CBS 118892]
gi|326470453|gb|EGD94462.1| DNA-directed RNA polymerase N/8 kDa subunit superfamily protein
[Trichophyton tonsurans CBS 112818]
gi|326478636|gb|EGE02646.1| DNA-directed RNA polymerase 8 kDa subunit protein [Trichophyton
equinum CBS 127.97]
Length = 74
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLRLLDEGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPAER 67
>gi|296423880|ref|XP_002841480.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637720|emb|CAZ85671.1| unnamed protein product [Tuber melanosporum]
Length = 73
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 55/68 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKV+G+ W+ YL LL+ EGDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVVGDLWERYLKLLEDGVAEGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
YN +++
Sbjct: 61 RYNPQERT 68
>gi|392868954|gb|EAS30307.2| DNA-directed RNA polymerase N/8 kDa subunit superfamily protein
[Coccidioides immitis RS]
Length = 74
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDLWERYLRLLDDGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 KYNPAER 67
>gi|296804818|ref|XP_002843257.1| DNA-directed RNA polymerase N/8 kDa subunit [Arthroderma otae CBS
113480]
gi|238845859|gb|EEQ35521.1| DNA-directed RNA polymerase N/8 kDa subunit [Arthroderma otae CBS
113480]
Length = 74
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLRLLDDGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPAER 67
>gi|361130449|gb|EHL02251.1| putative DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Glarea lozoyensis 74030]
Length = 75
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL L+ P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLKLIDEGIPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 KYNPAER 67
>gi|440636247|gb|ELR06166.1| DNA-directed RNA Polymerase II subunit L [Geomyces destructans
20631-21]
Length = 76
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W++Y+ LL+ GDA+D LGL RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWESYIKLLEDGEEHGDAMDHLGLKRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 KYNPAER 67
>gi|259485533|tpe|CBF82635.1| TPA: DNA-directed RNA polymerases N/8 kDa subunit superfamily
(AFU_orthologue; AFUA_7G02620) [Aspergillus nidulans
FGSC A4]
Length = 74
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGIPDGDAMDQLGCKRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPTER 67
>gi|237844051|ref|XP_002371323.1| DNA-directed RNA polymerase II, 8.2 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|211968987|gb|EEB04183.1| DNA-directed RNA polymerase II, 8.2 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|221485542|gb|EEE23823.1| DNA-directed RNA polymerase II, 8.2 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221506392|gb|EEE32027.1| DNA-directed RNA polymerase II, 8.2 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 72
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVI + W+ ++D++ D PEG+ALD LGL RYCCRRML+TH DLI+KLL
Sbjct: 1 MIIPIRCFTCGKVIAHLWEKWIDMIDEDRPEGEALDILGLDRYCCRRMLLTHADLIDKLL 60
Query: 61 NYNTLDK 67
YN +K
Sbjct: 61 AYNIYEK 67
>gi|71022207|ref|XP_761334.1| hypothetical protein UM05187.1 [Ustilago maydis 521]
gi|46097828|gb|EAK83061.1| hypothetical protein UM05187.1 [Ustilago maydis 521]
Length = 155
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW+ YL LL EG+AL L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLALLLDGRTEGEALTELDLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNT 64
+YNT
Sbjct: 61 HYNT 64
>gi|401412774|ref|XP_003885834.1| DNA-directed RNA polymerase subunit N, related [Neospora caninum
Liverpool]
gi|325120254|emb|CBZ55808.1| DNA-directed RNA polymerase subunit N, related [Neospora caninum
Liverpool]
Length = 72
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVI + W+ ++D++ D PEG+ALD LGL RYCCRRML+TH DLI+KLL
Sbjct: 1 MIIPIRCFTCGKVIAHLWEKWIDMIDEDRPEGEALDLLGLDRYCCRRMLLTHADLIDKLL 60
Query: 61 NYNTLDK 67
YN +K
Sbjct: 61 AYNIYEK 67
>gi|302690386|ref|XP_003034872.1| hypothetical protein SCHCODRAFT_34544 [Schizophyllum commune
H4-8]
gi|300108568|gb|EFI99969.1| hypothetical protein SCHCODRAFT_34544, partial [Schizophyllum
commune H4-8]
Length = 62
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 53/62 (85%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKV+G+KW TY+ LL + EGDALD L L RYCCRRM++THVDLIEKLL+
Sbjct: 1 IIPVRCFSCGKVVGDKWATYMRLLAENVSEGDALDQLNLRRYCCRRMVLTHVDLIEKLLH 60
Query: 62 YN 63
YN
Sbjct: 61 YN 62
>gi|189204954|ref|XP_001938812.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985911|gb|EDU51399.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 77
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 54/70 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCF+CGKV G+ W+ Y++LL E DALDA+GL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPIRCFSCGKVTGDLWEKYMNLLSDGAEEADALDAVGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKSDT 70
YN ++
Sbjct: 61 KYNASEREQA 70
>gi|238593676|ref|XP_002393264.1| hypothetical protein MPER_07033 [Moniliophthora perniciosa FA553]
gi|215460484|gb|EEB94194.1| hypothetical protein MPER_07033 [Moniliophthora perniciosa FA553]
Length = 70
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/58 (79%), Positives = 51/58 (87%)
Query: 6 RCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN 63
RCFTCGKVIG+KW+TYLDLL D EGDALD L L RYCCRRM++THVDLIEKLL+YN
Sbjct: 1 RCFTCGKVIGDKWNTYLDLLAKDIAEGDALDELQLRRYCCRRMVLTHVDLIEKLLHYN 58
>gi|449018579|dbj|BAM81981.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 100
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 55/67 (82%), Gaps = 1/67 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+KW+ YL LL+ + E +ALDALGL RYCCRRML+THVDLIEK L
Sbjct: 1 MIIPVRCFTCGKVIGDKWEPYLQLLR-EKTEAEALDALGLKRYCCRRMLLTHVDLIEKSL 59
Query: 61 NYNTLDK 67
Y DK
Sbjct: 60 RYAWNDK 66
>gi|389632943|ref|XP_003714124.1| DNA-directed RNA polymerase N/8 kDa subunit [Magnaporthe oryzae
70-15]
gi|351646457|gb|EHA54317.1| DNA-directed RNA polymerase N/8 kDa subunit [Magnaporthe oryzae
70-15]
Length = 78
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKV G+ W+ +L+L+ + +GDA+DALG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERFLNLIDSGMSDGDAMDALGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
Y+T + D
Sbjct: 61 KYSTEGRHD 69
>gi|320593464|gb|EFX05873.1| DNA-directed RNA polymerases n subunit superfamily [Grosmannia
clavigera kw1407]
Length = 77
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKV+G+ W+ YL LL + P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVVGDLWERYLKLLDDNVPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
Y +S+
Sbjct: 61 KYTPDGRSEKK 71
>gi|320035435|gb|EFW17376.1| DNA-directed RNA polymerase subunit II RPB10 [Coccidioides
posadasii str. Silveira]
Length = 149
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 51/61 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+ W+ YL LL P+GDA+D LG RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDLWERYLRLLDDGVPDGDAMDQLGCKRYCCRRMLMTHVDLIEKLL 60
Query: 61 N 61
N
Sbjct: 61 N 61
>gi|350584217|ref|XP_001926826.3| PREDICTED: hypothetical protein LOC100156985 [Sus scrofa]
Length = 188
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M IPV CF CGK++ N W+ YL LLQA Y E DALDALGL +YCCR ML+ ++DLIEKLL
Sbjct: 122 MTIPVHCFMCGKIVSNTWEAYLGLLQAKYTEEDALDALGLKQYCCRHMLLAYMDLIEKLL 181
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 182 NYAPLEK 188
>gi|317155294|ref|XP_003190583.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Aspergillus oryzae RIB40]
Length = 74
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 53/67 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL +GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDEGVADGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPTER 67
>gi|407927671|gb|EKG20558.1| RNA polymerase subunit N/RPB10 [Macrophomina phaseolina MS6]
Length = 76
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+ W+ ++ L++ EGDA+D L L RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDLWERFVGLIEEGVHEGDAMDQLRLNRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
YN ++
Sbjct: 61 KYNNAERE 68
>gi|403350113|gb|EJY74502.1| DNA-directed RNA polymerases I/II/III subunit [Oxytricha
trifallax]
gi|403359686|gb|EJY79503.1| DNA-directed RNA polymerases I/II/III subunit [Oxytricha
trifallax]
Length = 71
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCFTCGKV+GNKW+ YLDLL+ D ALD LGL RYCCRRM++THVDLI KL
Sbjct: 1 MIIPVRCFTCGKVVGNKWNKYLDLLEQDGCTPCKALDELGLKRYCCRRMVLTHVDLISKL 60
Query: 60 LNYNTLDKS 68
LNYN +
Sbjct: 61 LNYNIYEHE 69
>gi|409042240|gb|EKM51724.1| hypothetical protein PHACADRAFT_212353 [Phanerochaete carnosa
HHB-10118-sp]
Length = 94
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+KW YL LL+ EG+AL L L RYCCRRM++THVDLIEKLL
Sbjct: 21 MIIPVRCFSCGKVVGDKWTAYLKLLET-MSEGEALTELQLKRYCCRRMVLTHVDLIEKLL 79
Query: 61 NYNTLDKSDT 70
YN ++S +
Sbjct: 80 QYNPNERSKS 89
>gi|428171789|gb|EKX40703.1| hypothetical protein GUITHDRAFT_88655 [Guillardia theta CCMP2712]
Length = 75
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKV-IGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCFTCGKV IGNKW YLDLL Y E A + L L RYCCRRMLMTHVDLIEKL
Sbjct: 1 MIIPVRCFTCGKVVIGNKWYKYLDLLHCGYQEAKAFEELELNRYCCRRMLMTHVDLIEKL 60
Query: 60 LNYN 63
+ YN
Sbjct: 61 MEYN 64
>gi|298710306|emb|CBJ31927.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 63
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 13 VIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
VIGNKW+TYL LLQADY EGDALD LGL RYCCRRM++THVDLIEKLLNYN+L++
Sbjct: 2 VIGNKWETYLSLLQADYNEGDALDELGLKRYCCRRMVLTHVDLIEKLLNYNSLER 56
>gi|392577089|gb|EIW70219.1| hypothetical protein TREMEDRAFT_29645, partial [Tremella
mesenterica DSM 1558]
Length = 79
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 53/62 (85%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKVIGN W+++++LL A EG+ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 2 IIPVRCFSCGKVIGNLWESWMELLAAGVNEGEALDRLQLKRYCCRRMVLTHVDLIEKLLM 61
Query: 62 YN 63
YN
Sbjct: 62 YN 63
>gi|402077893|gb|EJT73242.1| DNA-directed RNA polymerase N/8 kDa subunit [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 77
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 54/69 (78%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV G+ W+ YL LL +G A+DALGL RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVTGDLWERYLKLLDEGIDDGPAMDALGLQRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYNTLDKSD 69
Y+T + +
Sbjct: 61 KYSTEGRQE 69
>gi|393213805|gb|EJC99300.1| hypothetical protein FOMMEDRAFT_94298, partial [Fomitiporia
mediterranea MF3/22]
Length = 78
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIPVRCF+CGKV+G+KW+ Y+ LL EGD LD L L RYCCRRM++THVDLIEKLL+
Sbjct: 1 IIPVRCFSCGKVVGDKWNEYMALLSQGISEGDVLDELQLKRYCCRRMVLTHVDLIEKLLH 60
Query: 62 YNT 64
YN+
Sbjct: 61 YNS 63
>gi|145515940|ref|XP_001443864.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411264|emb|CAK76467.1| unnamed protein product [Paramecium tetraurelia]
Length = 68
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 52/63 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+G+ W Y+ LLQ G+ALD LGL RYCCRRM++THVDLI+KLL
Sbjct: 1 MIIPIRCFTCGKVVGHLWSDYVQLLQDGVTTGEALDRLGLERYCCRRMILTHVDLIDKLL 60
Query: 61 NYN 63
NYN
Sbjct: 61 NYN 63
>gi|70982284|ref|XP_746670.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Aspergillus fumigatus Af293]
gi|66844294|gb|EAL84632.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Aspergillus fumigatus Af293]
gi|159123082|gb|EDP48202.1| DNA-directed RNA polymerases N/8 kDa subunit superfamily
[Aspergillus fumigatus A1163]
Length = 140
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 51/62 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV+G+ W+ YL LL P+GDA+D LG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVVGDLWERYLQLLDDGIPDGDAMDQLGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NY 62
Y
Sbjct: 61 RY 62
>gi|164660666|ref|XP_001731456.1| hypothetical protein MGL_1639 [Malassezia globosa CBS 7966]
gi|159105356|gb|EDP44242.1| hypothetical protein MGL_1639 [Malassezia globosa CBS 7966]
Length = 83
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KWD YL LL EG+AL L L RYCCRRM++THVDLIE+LL
Sbjct: 1 MIIPVRCFSCGKVIGDKWDAYLALLIEGRTEGEALTELQLHRYCCRRMVLTHVDLIERLL 60
Query: 61 NYNTL 65
+YN +
Sbjct: 61 HYNNV 65
>gi|358054036|dbj|GAA99835.1| hypothetical protein E5Q_06538 [Mixia osmundae IAM 14324]
Length = 111
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 52/69 (75%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKV G+K YL LL+ E +AL LGL RYCCRRM++THVDLIEKLL
Sbjct: 42 MIIPVRCFTCGKVTGDKHIAYLALLEGGATENEALSTLGLRRYCCRRMVLTHVDLIEKLL 101
Query: 61 NYNTLDKSD 69
+YN +S
Sbjct: 102 HYNPYTRSK 110
>gi|161899111|ref|XP_001712782.1| RNA polymerase II subunit RPB10 [Bigelowiella natans]
gi|75756275|gb|ABA27170.1| RNA polymerase II subunit RPB10 [Bigelowiella natans]
Length = 65
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCF+CGKVI W YL+L++ + EG++LDAL + RYCCRRML++HVD+IEKLL
Sbjct: 1 MLIPIRCFSCGKVIAGSWLEYLELIKIGFSEGESLDALRMNRYCCRRMLLSHVDIIEKLL 60
Query: 61 NYNTL 65
NYN L
Sbjct: 61 NYNLL 65
>gi|403173282|ref|XP_003889244.1| DNA-directed RNA polymerase I, II, and III subunit RPABC5
[Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|375170209|gb|EHS64065.1| DNA-directed RNA polymerase I, II, and III subunit RPABC5
[Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 73
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+ W+ +L ++Q EGDA+DA+GL RYCCRRM++THVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVVGHVWELFLSIIQDHGLSEGDAMDAVGLKRYCCRRMVLTHVDLIEKL 60
Query: 60 LNYNTLDK 67
L YN ++
Sbjct: 61 LQYNPYER 68
>gi|378730766|gb|EHY57225.1| DNA-directed RNA polymerase I, II, and III subunit RPABC5
[Exophiala dermatitidis NIH/UT8656]
Length = 72
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKVI +KW+ Y+ LL+ +G+A+D +G RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIADKWERYMKLLEDGMSDGEAMDQVGAKRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
Y+ ++
Sbjct: 61 QYDPAER 67
>gi|343428843|emb|CBQ72388.1| probable DNA-directed RNA polymerase II chain RPB10 [Sporisorium
reilianum SRZ2]
Length = 71
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW+ YL LL EG+AL L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLALLLDGRTEGEALTELDLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
+YN ++
Sbjct: 61 HYNVHER 67
>gi|444519141|gb|ELV12603.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5,
partial [Tupaia chinensis]
Length = 57
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 50/57 (87%)
Query: 11 GKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
GK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 1 GKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 57
>gi|451847553|gb|EMD60860.1| hypothetical protein COCSADRAFT_46851, partial [Cochliobolus
sativus ND90Pr]
gi|451996621|gb|EMD89087.1| hypothetical protein COCHEDRAFT_1057262, partial [Cochliobolus
heterostrophus C5]
Length = 74
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 53/70 (75%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCF+CGKV G+ W+ Y+ LL E +ALD++GL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPIRCFSCGKVTGDLWEKYMALLSDGMEEAEALDSVGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKSDT 70
YN ++
Sbjct: 61 KYNASEREQA 70
>gi|388856854|emb|CCF49641.1| probable DNA-directed RNA polymerase II chain RPB10 [Ustilago
hordei]
Length = 71
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 54/67 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKVIG+KW+ YL LL EG+AL L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVIGDKWNAYLALLLDGRTEGEALTELDLKRYCCRRMVLTHVDLIEKLL 60
Query: 61 NYNTLDK 67
+YN ++
Sbjct: 61 HYNIHER 67
>gi|145524273|ref|XP_001447964.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415497|emb|CAK80567.1| unnamed protein product [Paramecium tetraurelia]
Length = 68
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKV+G+ W Y+ LLQ G++LD LGL RYCCRRM++THVDLI+KLL
Sbjct: 1 MIIPIRCFTCGKVVGHLWSDYVQLLQDGVTTGESLDRLGLERYCCRRMILTHVDLIDKLL 60
Query: 61 NYN 63
NYN
Sbjct: 61 NYN 63
>gi|330946278|ref|XP_003306729.1| hypothetical protein PTT_19937 [Pyrenophora teres f. teres 0-1]
gi|311315641|gb|EFQ85165.1| hypothetical protein PTT_19937 [Pyrenophora teres f. teres 0-1]
Length = 98
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCF+CGKV G+ W+ Y++LL E DALDA+GL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIVPIRCFSCGKVTGDLWEKYMNLLSDGAEEADALDAVGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NY 62
Y
Sbjct: 61 KY 62
>gi|396490908|ref|XP_003843446.1| similar to DNA-directed RNA polymerases I/II/III subunit
[Leptosphaeria maculans JN3]
gi|312220025|emb|CBX99967.1| similar to DNA-directed RNA polymerases I/II/III subunit
[Leptosphaeria maculans JN3]
Length = 78
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ Y+ L+ + +GDALDA+GL RYCCRRM++THVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYIGLITEQQMSDGDALDAVGLQRYCCRRMVLTHVDLIEKL 60
Query: 60 LNYNTLDKSDT 70
L YN ++
Sbjct: 61 LKYNASEREQA 71
>gi|443893855|dbj|GAC71311.1| DNA-directed RNA polymerase, subunit RPB10 [Pseudozyma antarctica
T-34]
Length = 140
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
IIP+RCF+CGKVIG+KW+ YL LL EG+AL L L RYCCRRM++THVDLIEKLL+
Sbjct: 20 IIPIRCFSCGKVIGDKWNAYLALLLDGRTEGEALTELDLKRYCCRRMVLTHVDLIEKLLH 79
Query: 62 YNTL 65
YN++
Sbjct: 80 YNSM 83
>gi|440468256|gb|ELQ37425.1| DNA-directed RNA polymerases N/8 kDa subunit [Magnaporthe oryzae
Y34]
gi|440485460|gb|ELQ65418.1| DNA-directed RNA polymerases N/8 kDa subunit [Magnaporthe oryzae
P131]
Length = 126
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 52/64 (81%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKV G+ W+ +L+L+ + +GDA+DALG RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERFLNLIDSGMSDGDAMDALGCKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNT 64
T
Sbjct: 61 KEGT 64
>gi|302415953|ref|XP_003005808.1| DNA-directed RNA polymerases I/II/III subunit 10 [Verticillium
albo-atrum VaMs.102]
gi|261355224|gb|EEY17652.1| DNA-directed RNA polymerases I/II/III subunit 10 [Verticillium
albo-atrum VaMs.102]
gi|346973860|gb|EGY17312.1| DNA-directed RNA polymerases I/II/III subunit 10 [Verticillium
dahliae VdLs.17]
Length = 76
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 50/62 (80%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVTGDLWERYLKLIDDGIADGDAMDELGLKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NY 62
Y
Sbjct: 61 KY 62
>gi|154321539|ref|XP_001560085.1| hypothetical protein BC1G_01644 [Botryotinia fuckeliana B05.10]
Length = 76
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 52/67 (77%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV G+ W+ Y+ L+ +GDA+D L L RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVTGDIWERYVKLIDEGVNDGDAMDELTLKRYCCRRMIMTHVDLIEKLL 60
Query: 61 NYNTLDK 67
YN ++
Sbjct: 61 RYNPAER 67
>gi|85116181|ref|XP_965008.1| DNA-directed RNA polymerases I/II/III subunit 10 [Neurospora
crassa OR74A]
gi|336262876|ref|XP_003346220.1| hypothetical protein SMAC_05757 [Sordaria macrospora k-hell]
gi|28926808|gb|EAA35772.1| DNA-directed RNA polymerases I/II/III subunit 10 [Neurospora
crassa OR74A]
gi|38567165|emb|CAE76459.1| probable DNA-directed RNA polymerase II chain RPB10 [Neurospora
crassa]
gi|336464816|gb|EGO53056.1| hypothetical protein NEUTE1DRAFT_119050 [Neurospora tetrasperma
FGSC 2508]
gi|350296920|gb|EGZ77897.1| DNA-directed RNA polymerases I/II/III subunit 10 [Neurospora
tetrasperma FGSC 2509]
gi|380093549|emb|CCC08512.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV+G+ W+ YL L+ + +GDALD LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVVGDLWERYLQLIDGEEITDGDALDQLGLKRYCCRRMVMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|310790015|gb|EFQ25548.1| RNA polymerase N/8 kDa subunit [Glomerella graminicola M1.001]
gi|429853622|gb|ELA28682.1| DNA-directed RNA polymerases n 8 kda subunit superfamily
[Colletotrichum gloeosporioides Nara gc5]
Length = 76
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPVRCFSCGKVTGDLWERYLKLIDDGITDGDAMDQLGLKRYCCRRMVMTHVDLIEKLL 60
Query: 61 NYN 63
Y
Sbjct: 61 KYT 63
>gi|300121057|emb|CBK21439.2| unnamed protein product [Blastocystis hominis]
Length = 74
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 52/65 (80%), Gaps = 1/65 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCFTCGKV+GNKW+ YL+ L+ + ALD LGL RYCCRRM++THVDLIE L
Sbjct: 1 MIIPIRCFTCGKVVGNKWEAYLNYLENENMDAATALDKLGLHRYCCRRMVLTHVDLIETL 60
Query: 60 LNYNT 64
L Y++
Sbjct: 61 LKYSS 65
>gi|449296670|gb|EMC92689.1| hypothetical protein BAUCODRAFT_258454 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 8/75 (10%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD--------YPEGDALDALGLVRYCCRRMLMTH 52
MIIP+RCF+CGKVI + ++ Y+ L+ A+ P+G+A+DALGL RYCCRRM++TH
Sbjct: 1 MIIPIRCFSCGKVIADLYERYVKLISANEDDPDSEPMPDGEAMDALGLNRYCCRRMVLTH 60
Query: 53 VDLIEKLLNYNTLDK 67
VDLIEKLL YN ++
Sbjct: 61 VDLIEKLLRYNPAER 75
>gi|346321698|gb|EGX91297.1| DNA-directed RNA polymerases I/II/III subunit 10 [Cordyceps
militaris CM01]
Length = 79
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYLQLIADPKKTDGDAMDELGLKRYCCRRMIMTHVDLIEKL 60
Query: 60 LNYNTLDKSD 69
L Y +S+
Sbjct: 61 LKYTPDGRSE 70
>gi|408388522|gb|EKJ68206.1| hypothetical protein FPSE_11673 [Fusarium pseudograminearum
CS3096]
Length = 85
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYLQLISDPRKTDGDAMDELGLKRYCCRRMIMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|342878287|gb|EGU79642.1| hypothetical protein FOXB_09925 [Fusarium oxysporum Fo5176]
Length = 80
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYLQLIADPRKTDGDAMDELGLKRYCCRRMIMTHVDLIEKL 60
Query: 60 LNYNTLDKSDTS 71
L Y +S+
Sbjct: 61 LKYTPDGRSEKK 72
>gi|400603060|gb|EJP70658.1| RNA polymerase N/8 kDa subunit [Beauveria bassiana ARSEF 2860]
Length = 79
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYLQLIADPRKTDGDAMDELGLKRYCCRRMIMTHVDLIEKL 60
Query: 60 LNYNTLDKSD 69
L Y +S+
Sbjct: 61 LKYTPDGRSE 70
>gi|116182146|ref|XP_001220922.1| hypothetical protein CHGG_01701 [Chaetomium globosum CBS 148.51]
gi|88185998|gb|EAQ93466.1| hypothetical protein CHGG_01701 [Chaetomium globosum CBS 148.51]
Length = 82
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ ++ L++ D +GDALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWEKFVKLIEEDGLSDGDALDQLGCKRYCCRRMVMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|340924300|gb|EGS19203.1| RNA polymerases I, II, and III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 89
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ ++ L++ + +GDALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWEKFVKLIEEEGLSDGDALDQLGCKRYCCRRMVMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|340516957|gb|EGR47203.1| predicted protein [Trichoderma reesei QM6a]
gi|358387687|gb|EHK25281.1| hypothetical protein TRIVIDRAFT_31885 [Trichoderma virens Gv29-8]
gi|358390992|gb|EHK40397.1| hypothetical protein TRIATDRAFT_302752 [Trichoderma atroviride
IMI 206040]
Length = 79
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYLQLIADPRKTDGDAMDELGLKRYCCRRMIMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|322695961|gb|EFY87761.1| DNA-directed RNA polymerases I/II/III subunit 10 [Metarhizium
acridum CQMa 102]
gi|322712036|gb|EFZ03609.1| DNA-directed RNA polymerases I/II/III subunit 10 [Metarhizium
anisopliae ARSEF 23]
Length = 79
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ YL L+ +GDA+D LGL RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWERYLQLIADPRKTDGDAMDELGLKRYCCRRMIMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|401826574|ref|XP_003887380.1| DNA-directed RNA polymerase II subunit Rpb10 [Encephalitozoon
hellem ATCC 50504]
gi|395459898|gb|AFM98399.1| DNA-directed RNA polymerase II subunit Rpb10 [Encephalitozoon
hellem ATCC 50504]
Length = 72
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 51/65 (78%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK I +KW+ YL+LL+ D E +ALD LG+ R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYLELLKTDKREAEALDELGMKRICCRRMFLGHVDIVDKLL 60
Query: 61 NYNTL 65
++ +
Sbjct: 61 KFDIV 65
>gi|367052409|ref|XP_003656583.1| hypothetical protein THITE_2121415 [Thielavia terrestris NRRL
8126]
gi|347003848|gb|AEO70247.1| hypothetical protein THITE_2121415 [Thielavia terrestris NRRL
8126]
Length = 83
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ ++ L++ + +GDALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWEKFVKLIEEEGLSDGDALDQLGCKRYCCRRMVMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|367018664|ref|XP_003658617.1| hypothetical protein MYCTH_2294589 [Myceliophthora thermophila
ATCC 42464]
gi|347005884|gb|AEO53372.1| hypothetical protein MYCTH_2294589 [Myceliophthora thermophila
ATCC 42464]
Length = 81
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCF+CGKV G+ W+ ++ L++ + +GDALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPIRCFSCGKVTGDLWEKFVKLIEEEGLSDGDALDQLGCKRYCCRRMVMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|218186531|gb|EEC68958.1| hypothetical protein OsI_37686 [Oryza sativa Indica Group]
Length = 223
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 57/93 (61%), Gaps = 22/93 (23%)
Query: 1 MIIPVRCFTCGK----------VIGNK--------WDTYLDLLQADY----PEGDALDAL 38
MIIPVRCFTCGK +G+ W L D DALDAL
Sbjct: 130 MIIPVRCFTCGKWQWKTARGGEALGSNGRDRDGLLWGGGRQLADGDADLSMRTWDALDAL 189
Query: 39 GLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS 71
GLVRYCCRRMLMTHVDLIEKLLNYNTL+K++T+
Sbjct: 190 GLVRYCCRRMLMTHVDLIEKLLNYNTLEKTETA 222
>gi|401423399|ref|XP_003876186.1| DNA-directed RNA polymerase ii [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492427|emb|CBZ27701.1| DNA-directed RNA polymerase ii [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 84
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRC++CGKV+GN ++ Y LL DY E +ALDAL L RYCCRRM+++H+DLI+ L+
Sbjct: 1 MIIPVRCYSCGKVVGNLYEQYQRLLDEDYTEAEALDALHLGRYCCRRMILSHIDLIDDLI 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|154338820|ref|XP_001565632.1| DNA-directed RNA polymerase ii [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062684|emb|CAM39127.1| DNA-directed RNA polymerase ii [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 84
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRC++CGKV+GN ++ Y LL DY E +ALDAL L RYCCRRM+++H+DLI+ L+
Sbjct: 1 MIIPVRCYSCGKVVGNLYEQYQRLLDQDYTESEALDALHLDRYCCRRMILSHIDLIDDLI 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|389593073|ref|XP_003721802.1| DNA-directed RNA polymerase ii [Leishmania major strain Friedlin]
gi|321399762|emb|CBZ05840.1| DNA-directed RNA polymerase ii [Leishmania major strain Friedlin]
Length = 84
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRC++CGKV+GN ++ Y LL DY E +ALDAL L RYCCRRM+++H+DLI+ L+
Sbjct: 1 MIIPVRCYSCGKVVGNLYEQYQRLLDQDYTEAEALDALHLDRYCCRRMILSHIDLIDDLI 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|339898485|ref|XP_003392598.1| DNA-directed RNA polymerase ii [Leishmania infantum JPCM5]
gi|398016554|ref|XP_003861465.1| DNA-directed RNA polymerase ii [Leishmania donovani]
gi|321398361|emb|CBZ08767.1| DNA-directed RNA polymerase ii [Leishmania infantum JPCM5]
gi|322499691|emb|CBZ34765.1| DNA-directed RNA polymerase ii [Leishmania donovani]
Length = 84
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 51/64 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRC++CGKV+GN ++ Y LL DY E +ALDAL L RYCCRRM+++H+DLI+ L+
Sbjct: 1 MIIPVRCYSCGKVVGNLYEQYQRLLDQDYTEAEALDALHLDRYCCRRMILSHIDLIDDLI 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|303389520|ref|XP_003072992.1| DNA-directed RNA polymerase II subunit N [Encephalitozoon
intestinalis ATCC 50506]
gi|303302136|gb|ADM11632.1| DNA-directed RNA polymerase II subunit N [Encephalitozoon
intestinalis ATCC 50506]
Length = 72
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 50/65 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK I +KW+ YL+LL+ E +ALD LG+ R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYLELLRTSGREAEALDELGMKRICCRRMFLGHVDIVDKLL 60
Query: 61 NYNTL 65
++ +
Sbjct: 61 KFDIV 65
>gi|398408553|ref|XP_003855742.1| hypothetical protein MYCGRDRAFT_103070 [Zymoseptoria tritici
IPO323]
gi|339475626|gb|EGP90718.1| hypothetical protein MYCGRDRAFT_103070 [Zymoseptoria tritici
IPO323]
Length = 81
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 55/73 (75%), Gaps = 6/73 (8%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQA------DYPEGDALDALGLVRYCCRRMLMTHVD 54
MIIP+RCF+CGKVI + ++ Y++L+ +GDA+D+LGL RYCCRRM++THVD
Sbjct: 1 MIIPIRCFSCGKVIADLYERYVELIGTVKEDGEAMTDGDAMDSLGLNRYCCRRMMLTHVD 60
Query: 55 LIEKLLNYNTLDK 67
LIEKLL YN ++
Sbjct: 61 LIEKLLRYNPAER 73
>gi|171695056|ref|XP_001912452.1| hypothetical protein [Podospora anserina S mat+]
gi|170947770|emb|CAP59933.1| unnamed protein product [Podospora anserina S mat+]
Length = 82
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCF+CGKV+G+ W+ ++ L++ +G+ALD LG RYCCRRM+MTHVDLIEKL
Sbjct: 1 MIIPVRCFSCGKVVGDLWEKFVVLIEDRGLADGEALDELGCKRYCCRRMVMTHVDLIEKL 60
Query: 60 LNYN 63
L Y
Sbjct: 61 LKYT 64
>gi|77553144|gb|ABA95940.1| expressed protein [Oryza sativa Japonica Group]
Length = 202
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 53/100 (53%), Gaps = 43/100 (43%)
Query: 12 KVIGNKWDTYLDLLQADYPEG--------------------------------------- 32
KVIGNKWD YLDLLQADY EG
Sbjct: 93 KVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGRRLADGDADLSV 152
Query: 33 ---DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 69
DALDALGLVRYCCRRMLMTHVDLIEKLLNYN D SD
Sbjct: 153 HMWDALDALGLVRYCCRRMLMTHVDLIEKLLNYNN-DGSD 191
>gi|452977186|gb|EME76959.1| hypothetical protein MYCFIDRAFT_85360 [Pseudocercospora fijiensis
CIRAD86]
Length = 81
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 6/73 (8%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQA------DYPEGDALDALGLVRYCCRRMLMTHVD 54
MIIP+RCF+CGKVI + ++ Y++L+ +GDA+D LGL RYCCRRM++THVD
Sbjct: 1 MIIPIRCFSCGKVIADLYERYVELIGTVQENGDTISDGDAMDQLGLNRYCCRRMMLTHVD 60
Query: 55 LIEKLLNYNTLDK 67
LIEKLL YN ++
Sbjct: 61 LIEKLLRYNPAER 73
>gi|428171639|gb|EKX40554.1| hypothetical protein GUITHDRAFT_75411 [Guillardia theta CCMP2712]
Length = 71
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTC K IG+ W YL++L+ +Y + D + LGL RYCCRRML+THVDLIEKL+
Sbjct: 1 MIIPIRCFTCNKTIGHMWRRYLEILE-NYDKEDGAEELGLKRYCCRRMLLTHVDLIEKLM 59
Query: 61 NYN 63
YN
Sbjct: 60 VYN 62
>gi|452839374|gb|EME41313.1| hypothetical protein DOTSEDRAFT_176384 [Dothistroma septosporum
NZE10]
Length = 81
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 6/73 (8%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADY------PEGDALDALGLVRYCCRRMLMTHVD 54
MIIP+RCF+CGKVI + ++ Y++L+ +GDA+D LGL RYCCRRM++THVD
Sbjct: 1 MIIPIRCFSCGKVIADLYERYVELIGTPQENGDTMSDGDAMDQLGLNRYCCRRMMLTHVD 60
Query: 55 LIEKLLNYNTLDK 67
LIEKLL YN ++
Sbjct: 61 LIEKLLRYNPAER 73
>gi|156094824|ref|XP_001613448.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|221051966|ref|XP_002257559.1| DNA-directed RNA polymerase 2, 8.2 kDa polypeptide [Plasmodium
knowlesi strain H]
gi|148802322|gb|EDL43721.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative
[Plasmodium vivax]
gi|193807389|emb|CAQ37894.1| DNA-directed RNA polymerase 2, 8.2 kDa polypeptide, putative
[Plasmodium knowlesi strain H]
Length = 69
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGN W Y L+ + DALD L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLYEKKLEEGVSKCDALDELNLTRYCCRRMILTHADMMDKLL 60
Query: 61 NYNTLDKS 68
YN ++
Sbjct: 61 CYNIYERK 68
>gi|71416765|ref|XP_810368.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70874887|gb|EAN88517.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 84
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 51/64 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKVIGN ++TY LL DY E +AL+AL L R CCRRM+++H+DL++ LL
Sbjct: 1 MLIPVRCYSCGKVIGNLYETYQQLLSEDYTEAEALNALQLDRMCCRRMILSHIDLVDDLL 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|453083253|gb|EMF11299.1| DNA-directed RNA polymerases I/II/III subunit 10 [Mycosphaerella
populorum SO2202]
Length = 81
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 54/73 (73%), Gaps = 6/73 (8%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQA------DYPEGDALDALGLVRYCCRRMLMTHVD 54
MIIP+RCF+CGKVI + ++ Y++L+ +GDA+D LGL RYCCRRM++THVD
Sbjct: 1 MIIPIRCFSCGKVIADLYERYVELIGTVQDNGDTVSDGDAMDQLGLNRYCCRRMMLTHVD 60
Query: 55 LIEKLLNYNTLDK 67
LIEKLL YN ++
Sbjct: 61 LIEKLLRYNPAER 73
>gi|146165098|ref|XP_001014396.2| RNA polymerases N / 8 kDa subunit family protein [Tetrahymena
thermophila]
gi|146145592|gb|EAR94151.2| RNA polymerases N / 8 kDa subunit family protein [Tetrahymena
thermophila SB210]
Length = 73
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 4/67 (5%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG----DALDALGLVRYCCRRMLMTHVDLI 56
MIIPVRCFTCGKV+G+ W+ +L ++ P ALD L L RYCCRRM++TH DLI
Sbjct: 1 MIIPVRCFTCGKVVGHMWNDFLQMISESNPNKKDMKSALDELRLNRYCCRRMILTHCDLI 60
Query: 57 EKLLNYN 63
+KLLNYN
Sbjct: 61 DKLLNYN 67
>gi|222616738|gb|EEE52870.1| hypothetical protein OsJ_35429 [Oryza sativa Japonica Group]
Length = 144
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 53/100 (53%), Gaps = 43/100 (43%)
Query: 12 KVIGNKWDTYLDLLQADYPEG--------------------------------------- 32
KVIGNKWD YLDLLQADY EG
Sbjct: 35 KVIGNKWDLYLDLLQADYTEGGSGRQRGEERYWGLMAATEMVCYGGGGRRLADGDADLSV 94
Query: 33 ---DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 69
DALDALGLVRYCCRRMLMTHVDLIEKLLNYN D SD
Sbjct: 95 HMWDALDALGLVRYCCRRMLMTHVDLIEKLLNYNN-DGSD 133
>gi|71406041|ref|XP_805591.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70869057|gb|EAN83740.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 84
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 51/64 (79%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKVIGN ++ Y LL DY E +AL+AL L R CCRRM+++H+DL+++LL
Sbjct: 1 MLIPVRCYSCGKVIGNLYEKYQQLLSEDYTEAEALNALQLDRMCCRRMILSHIDLVDELL 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|19074282|ref|NP_585788.1| DNA-DIRECTED RNA POLYMERASE II 8.2kDa POLYPEPTIDE
[Encephalitozoon cuniculi GB-M1]
gi|51702030|sp|Q8SRS6.1|RPAB5_ENCCU RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC5; Short=RNA polymerases I, II, and III subunit
ABC5; AltName: Full=RPB10
gi|19068924|emb|CAD25392.1| DNA-DIRECTED RNA POLYMERASE II 8.2kDa POLYPEPTIDE
[Encephalitozoon cuniculi GB-M1]
gi|449329504|gb|AGE95776.1| DNA-directed RNA polymerase II 8.2kDa polypeptide
[Encephalitozoon cuniculi]
Length = 72
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK I +KW+ Y +LL+ D + +ALD LG+ R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 61 NYNTL 65
++ +
Sbjct: 61 KFDIV 65
>gi|21842226|gb|AAM77740.1|AF510648_1 RNA polymerase II subunit Rpb10 [Giardia intestinalis]
Length = 84
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 50/72 (69%), Gaps = 9/72 (12%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL---------QADYPEGDALDALGLVRYCCRRMLMT 51
MIIPVRCFTCGKVIG+ ++ YL LL ++ P ALD LGL RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 60
Query: 52 HVDLIEKLLNYN 63
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLYT 72
>gi|124511724|ref|XP_001348995.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium falciparum 3D7]
gi|23498763|emb|CAD50833.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium falciparum 3D7]
Length = 69
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 49/68 (72%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGN W Y L+ + DAL+ L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSVYEKKLEEGLSKCDALNELNLYRYCCRRMILTHADMMDKLL 60
Query: 61 NYNTLDKS 68
YN ++
Sbjct: 61 CYNIYERK 68
>gi|159116409|ref|XP_001708426.1| DNA-directed RNA polymerase RPB10 [Giardia lamblia ATCC 50803]
gi|157436537|gb|EDO80752.1| DNA-directed RNA polymerase RPB10 [Giardia lamblia ATCC 50803]
Length = 122
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 50/72 (69%), Gaps = 9/72 (12%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL---------QADYPEGDALDALGLVRYCCRRMLMT 51
MIIPVRCFTCGKVIG+ ++ YL LL ++ P ALD LGL RYCCRRML+T
Sbjct: 39 MIIPVRCFTCGKVIGSLYEKYLKLLGEYGAEESGSSETPAKRALDELGLTRYCCRRMLLT 98
Query: 52 HVDLIEKLLNYN 63
HVDLI+ LL Y
Sbjct: 99 HVDLIDDLLLYT 110
>gi|68063847|ref|XP_673919.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, [Plasmodium
berghei strain ANKA]
gi|70940822|ref|XP_740775.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, [Plasmodium
chabaudi chabaudi]
gi|83032713|ref|XP_729160.1| RNA polymerase II subunit Rpb10 [Plasmodium yoelii yoelii 17XNL]
gi|23486138|gb|EAA20725.1| Putative RNA polymerase II subunit Rpb10 [Plasmodium yoelii
yoelii]
gi|56492117|emb|CAI02143.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium berghei]
gi|56518726|emb|CAH80812.1| DNA-directed RNA polymerase 2 8.2 kDa polypeptide, putative
[Plasmodium chabaudi chabaudi]
Length = 69
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGN W Y L + DALD L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLYEKKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 60
Query: 61 NYNTLDKS 68
YN ++
Sbjct: 61 CYNIYERK 68
>gi|123504806|ref|XP_001328837.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121911785|gb|EAY16614.1| hypothetical protein TVAG_434510 [Trichomonas vaginalis G3]
Length = 73
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG +IG+KW Y+ L++ ++ +AL+AL L R+CCRRML+THVDL++++
Sbjct: 1 MLIPVRCFTCGAIIGHKWKEYVRLIEEEHMNYTEALNALNLKRFCCRRMLLTHVDLLDRM 60
Query: 60 LNYNTLDKSDTS 71
L Y+ D + T
Sbjct: 61 LLYSRQDTTPTQ 72
>gi|90954543|emb|CAJ44912.1| DNA-directed RNA polymerase subunit 2RPB10 [Trypanosoma brucei
brucei]
Length = 71
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 46/68 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E ALDA L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGSSEEAALDAFNLWRFCCRRMFLTHVDFSDLLL 60
Query: 61 NYNTLDKS 68
YN D S
Sbjct: 61 KYNPADSS 68
>gi|308157747|gb|EFO60812.1| DNA-directed RNA polymerase RPB10 [Giardia lamblia P15]
Length = 84
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 50/72 (69%), Gaps = 9/72 (12%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL---------QADYPEGDALDALGLVRYCCRRMLMT 51
MIIPVRCFTCGKV+G+ ++ YL LL ++ P ALD LGL RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVVGSLYEKYLKLLGEYGAEENGNSETPAKRALDELGLTRYCCRRMLLT 60
Query: 52 HVDLIEKLLNYN 63
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLYT 72
>gi|253744643|gb|EET00816.1| DNA-directed RNA polymerase RPB10 [Giardia intestinalis ATCC
50581]
Length = 84
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 51/72 (70%), Gaps = 9/72 (12%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-----QAD----YPEGDALDALGLVRYCCRRMLMT 51
MIIPVRCFTCGKV+G+ ++ YL LL +AD P ALD LGL RYCCRRML+T
Sbjct: 1 MIIPVRCFTCGKVVGSLYEKYLKLLGEYEAEADGSLETPAKRALDELGLTRYCCRRMLLT 60
Query: 52 HVDLIEKLLNYN 63
HVDLI+ LL Y
Sbjct: 61 HVDLIDDLLLYT 72
>gi|154333958|ref|XP_001563234.1| putative DNA-directed RNA polymerase ii 8.2 Kd polypeptide
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134060246|emb|CAM45655.1| putative DNA-directed RNA polymerase ii 8.2 Kd polypeptide
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 89
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E DA++A L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 61 NYNTLDKS 68
+N D +
Sbjct: 61 KFNPADTN 68
>gi|157866300|ref|XP_001681856.1| putative DNA-directed RNA polymerase ii 8.2 Kdpolypeptide
[Leishmania major strain Friedlin]
gi|68125155|emb|CAJ02972.1| putative DNA-directed RNA polymerase ii 8.2 Kdpolypeptide
[Leishmania major strain Friedlin]
Length = 89
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E DA++A L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 61 NYNTLDKS 68
+N D +
Sbjct: 61 KFNPADTN 68
>gi|340052588|emb|CCC46870.1| putative DNA-directed RNA polymerase subunit [Trypanosoma vivax
Y486]
Length = 84
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 49/64 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKVIG+ ++TY LL DY E +AL AL L R CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVIGHLYETYQQLLNEDYTEAEALKALRLSRMCCRRMILSHIDLADDLL 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|440493847|gb|ELQ76271.1| DNA-directed RNA polymerase, subunit RPB10 [Trachipleistophora
hominis]
Length = 72
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 53/71 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTC K I + ++ Y+ LL+ADY E +A+D LG+ R CCRRM++ HVD+++KLL
Sbjct: 1 MLIPVRCFTCNKEISSLYEKYVLLLKADYTECEAMDKLGIKRMCCRRMVLCHVDIVDKLL 60
Query: 61 NYNTLDKSDTS 71
++T +T
Sbjct: 61 KFDTTQDINTE 71
>gi|401417641|ref|XP_003873313.1| putative DNA-directed RNA polymerase ii 8.2 Kd polypeptide
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322489542|emb|CBZ24800.1| putative DNA-directed RNA polymerase ii 8.2 Kd polypeptide
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 89
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E DA++A L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNAFHLERFCCRRMMLTHVDMTDLLL 60
Query: 61 NYNTLDKS 68
+N D +
Sbjct: 61 KFNPADTN 68
>gi|68077065|ref|XP_680452.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501385|emb|CAH98929.1| hypothetical protein PB001541.02.0 [Plasmodium berghei]
Length = 68
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK+IGN W Y + L + DALD L L RYCCRRM++TH D+++KLL
Sbjct: 1 MIIPVRCFTCGKLIGNLWSLY-EKLDEGISKCDALDELNLSRYCCRRMMLTHADMMDKLL 59
Query: 61 NYNTLDKS 68
YN ++
Sbjct: 60 CYNIYERK 67
>gi|71400501|ref|XP_803070.1| DNA-directed RNA polymerase subunit [Trypanosoma cruzi strain CL
Brener]
gi|70865670|gb|EAN81624.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma cruzi]
Length = 77
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 46/68 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E ALDA L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGVSEEAALDAFNLQRFCCRRMFLTHVDFSDLLL 60
Query: 61 NYNTLDKS 68
+N D +
Sbjct: 61 KFNPADTN 68
>gi|71653415|ref|XP_815345.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide [Trypanosoma
cruzi strain CL Brener]
gi|70880394|gb|EAN93494.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative
[Trypanosoma cruzi]
Length = 77
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 46/68 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E ALDA L R+CCRRM +THVD + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVAEGVSEEAALDAFNLQRFCCRRMFLTHVDFSDLLL 60
Query: 61 NYNTLDKS 68
+N D +
Sbjct: 61 KFNPADTN 68
>gi|452841700|gb|EME43637.1| hypothetical protein DOTSEDRAFT_95859, partial [Dothistroma
septosporum NZE10]
Length = 83
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 17/83 (20%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYP-EGD----------------ALDALGLVRY 43
M+IP+RCFTCGKVIG+ +D +++L+ + P EG A+D +GL RY
Sbjct: 1 MLIPIRCFTCGKVIGHLFDKHVELISTEVPDEGATAKSGQSQTKLMDDRVAVDMIGLERY 60
Query: 44 CCRRMLMTHVDLIEKLLNYNTLD 66
CCRRM++THVD++E++L Y T++
Sbjct: 61 CCRRMILTHVDMVEEMLGYGTIE 83
>gi|146080954|ref|XP_001464131.1| putative DNA-directed RNA polymerase ii 8.2 Kd polypeptide
[Leishmania infantum JPCM5]
gi|398012238|ref|XP_003859313.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative
[Leishmania donovani]
gi|134068221|emb|CAM66507.1| putative DNA-directed RNA polymerase ii 8.2 Kd polypeptide
[Leishmania infantum JPCM5]
gi|322497527|emb|CBZ32601.1| DNA-directed RNA polymerase ii 8.2 Kd polypeptide, putative
[Leishmania donovani]
Length = 89
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG VI +K+ YLDL+ E DA++ L R+CCRRM++THVD+ + LL
Sbjct: 1 MIIPVRCFTCGNVIADKYLLYLDLVSQGVSEEDAMNVFHLERFCCRRMMLTHVDMTDLLL 60
Query: 61 NYNTLDKS 68
+N D +
Sbjct: 61 KFNPADTN 68
>gi|429963967|gb|ELA45965.1| hypothetical protein VCUG_02539 [Vavraia culicis 'floridensis']
Length = 72
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 54/71 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTC K I + ++ Y++LL+++Y E +A++ L + R CCRRM++ HVD+++KLL
Sbjct: 1 MLIPVRCFTCNKEISSLYEKYIELLKSEYTECEAMNKLNIKRMCCRRMVLCHVDIVDKLL 60
Query: 61 NYNTLDKSDTS 71
++T+ +T
Sbjct: 61 KFDTIQDINTE 71
>gi|20094914|ref|NP_614761.1| DNA-directed RNA polymerase subunit N [Methanopyrus kandleri
AV19]
gi|23822099|sp|Q8TVB4.1|RPON_METKA RecName: Full=DNA-directed RNA polymerase subunit N
gi|19888150|gb|AAM02691.1| DNA-directed RNA polymerase, subunit N [Methanopyrus kandleri
AV19]
Length = 72
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCFTCG+ I + W+ Y++L++ + E G+ALD LG+ RYCCRRM ++HVDL+E+
Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEES 60
Query: 60 LNYNT 64
L Y
Sbjct: 61 LPYTP 65
>gi|86438842|emb|CAJ43708.1| RNA polymerase I subunit 1RPB10 [Trypanosoma brucei brucei]
Length = 84
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 50/64 (78%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKV+G+ ++ Y +LL D+ E +AL+AL L R CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|72386589|ref|XP_843719.1| DNA-directed RNA polymerase subunit [Trypanosoma brucei TREU927]
gi|62175427|gb|AAX69569.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma
brucei]
gi|70800251|gb|AAZ10160.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261326788|emb|CBH09761.1| DNA-directed RNA polymerase subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 84
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 50/64 (78%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKV+G+ ++ Y +LL D+ E +AL+AL L R CCRRM+++H+DL + LL
Sbjct: 1 MLIPVRCYSCGKVVGHLYELYQELLNQDHTEAEALNALRLSRMCCRRMILSHIDLADDLL 60
Query: 61 NYNT 64
Y+
Sbjct: 61 PYSV 64
>gi|15922384|ref|NP_378053.1| DNA-directed RNA polymerase subunit N [Sulfolobus tokodaii str.
7]
gi|21263953|sp|Q96YW4.1|RPON_SULTO RecName: Full=DNA-directed RNA polymerase subunit N
gi|15623173|dbj|BAB67162.1| DNA-directed RNA polymerase subunit N [Sulfolobus tokodaii str.
7]
Length = 66
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG +IG+KW+ ++ + G LD LG+ RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>gi|332796342|ref|YP_004457842.1| RNA polymerase subunit N [Acidianus hospitalis W1]
gi|332694077|gb|AEE93544.1| RNA polymerase, subunit N [Acidianus hospitalis W1]
Length = 66
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 47/63 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG +I +KW+ ++ + A LD LG+ RYCCRRML++HVD+I++++
Sbjct: 1 MIIPVRCFTCGSLIADKWEPFITRVNAGEDPQKVLDDLGVRRYCCRRMLLSHVDIIKEVV 60
Query: 61 NYN 63
NY
Sbjct: 61 NYT 63
>gi|67477535|ref|XP_654226.1| DNA-directed RNA polymerase subunit N [Entamoeba histolytica
HM-1:IMSS]
gi|56471256|gb|EAL48839.1| DNA-directed RNA polymerase subunit N, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407035380|gb|EKE37674.1| DNA-directed RNA polymerase subunit N, putative [Entamoeba
nuttalli P19]
gi|449701826|gb|EMD42572.1| DNA-directed RNA polymerase subunit N, putative [Entamoeba
histolytica KU27]
Length = 73
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIPVRCFTCGKVIGNKW+ +L+L P LG+ RYCC+RML++HV+LI L
Sbjct: 1 MIIPVRCFTCGKVIGNKWEKFLELATGGKVPMDQVFSELGIERYCCKRMLVSHVNLIGFL 60
Query: 60 LNYNTLDKS 68
Y+ +S
Sbjct: 61 SMYDLPSES 69
>gi|15897034|ref|NP_341639.1| DNA-directed RNA polymerase subunit N [Sulfolobus solfataricus
P2]
gi|284173378|ref|ZP_06387347.1| DNA-directed RNA polymerase subunit N [Sulfolobus solfataricus
98/2]
gi|384433534|ref|YP_005642892.1| RNA polymerase, N/8 Kd subunit [Sulfolobus solfataricus 98/2]
gi|18202637|sp|Q980Z8.1|RPON_SULSO RecName: Full=DNA-directed RNA polymerase subunit N
gi|167744890|pdb|2PMZ|N Chain N, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744901|pdb|2PMZ|Y Chain Y, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782153|pdb|3HKZ|N Chain N, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|239782166|pdb|3HKZ|W Chain W, The X-Ray Crystal Structure Of Rna Polymerase From
Archaea
gi|13813199|gb|AAK40429.1| DNA-directed RNA polymerase, subunit N (rpoN) [Sulfolobus
solfataricus P2]
gi|261601688|gb|ACX91291.1| RNA polymerase, N/8 Kd subunit [Sulfolobus solfataricus 98/2]
Length = 66
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 47/62 (75%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW +++ + A G LD LG+ RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 61 NY 62
+Y
Sbjct: 61 HY 62
>gi|374723772|gb|EHR75852.1| DNA-directed RNA polymerase subunit N [uncultured marine group II
euryarchaeote]
Length = 67
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+CG VI +KW+ + +L A + +ALD +GL+RYCCRRM + H+DLI +
Sbjct: 1 MIIPVRCFSCGGVIAHKWEEFKELKAAGLEDAEALDKIGLMRYCCRRMYVGHIDLIYEAA 60
Query: 61 NYNT 64
++
Sbjct: 61 PFSA 64
>gi|389582019|dbj|GAB64419.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide putative,
partial [Plasmodium cynomolgi strain B]
Length = 65
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 5 VRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT 64
VRCFTCGK+IGN W Y L+ + DALD L L RYCCRRM++TH D+++KLL YN
Sbjct: 1 VRCFTCGKLIGNLWSLYEKKLEEGVSKCDALDELNLTRYCCRRMILTHADMMDKLLCYNI 60
Query: 65 LDKS 68
++
Sbjct: 61 YERK 64
>gi|332157860|ref|YP_004423139.1| DNA-directed RNA polymerase subunit N [Pyrococcus sp. NA2]
gi|389852936|ref|YP_006355170.1| DNA-directed RNA polymerase subunit N [Pyrococcus sp. ST04]
gi|331033323|gb|AEC51135.1| DNA-directed RNA polymerase subunit N [Pyrococcus sp. NA2]
gi|388250242|gb|AFK23095.1| DNA-directed RNA polymerase subunit N [Pyrococcus sp. ST04]
Length = 65
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI++++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDEIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYRV 64
>gi|288932314|ref|YP_003436374.1| RNA polymerase, N/8 Kd subunit [Ferroglobus placidus DSM 10642]
gi|288894562|gb|ADC66099.1| RNA polymerase, N/8 Kd subunit [Ferroglobus placidus DSM 10642]
Length = 72
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+ PVRCFTCG VI +KW+ Y LL +ALD+LG+ RYCCRRM TH ++E+L
Sbjct: 1 MFPVRCFTCGAVIAHKWEEYKRLLSEGKSPREALDSLGIERYCCRRMFFTHKSVVEELAR 60
Query: 62 YNTL 65
Y +
Sbjct: 61 YRGV 64
>gi|375083501|ref|ZP_09730521.1| DNA-directed RNA polymerase subunit N [Thermococcus litoralis DSM
5473]
gi|374741828|gb|EHR78246.1| DNA-directed RNA polymerase subunit N [Thermococcus litoralis DSM
5473]
Length = 65
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + + ++ LD LGL RYCCRRML++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYIFKERVEKGEDPEKVLDELGLERYCCRRMLLSHVELIDEIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYRV 64
>gi|305662638|ref|YP_003858926.1| DNA-directed RNA polymerase, subunit N [Ignisphaera aggregans DSM
17230]
gi|304377207|gb|ADM27046.1| DNA-directed RNA polymerase, subunit N [Ignisphaera aggregans DSM
17230]
Length = 66
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG IG KW+ + +++ G LD LG+ RYCCRRM+++H++L+ +++
Sbjct: 1 MIIPVRCFTCGYPIGAKWEEFYRRVKSGEDPGRVLDELGIRRYCCRRMMLSHIELLREVI 60
Query: 61 NYNTLD 66
Y ++
Sbjct: 61 RYGSIK 66
>gi|227828311|ref|YP_002830091.1| DNA-directed RNA polymerase subunit N [Sulfolobus islandicus
M.14.25]
gi|227831069|ref|YP_002832849.1| DNA-directed RNA polymerase subunit N [Sulfolobus islandicus
L.S.2.15]
gi|229579950|ref|YP_002838349.1| DNA-directed RNA polymerase subunit N [Sulfolobus islandicus
Y.G.57.14]
gi|229581389|ref|YP_002839788.1| DNA-directed RNA polymerase subunit N [Sulfolobus islandicus
Y.N.15.51]
gi|229585541|ref|YP_002844043.1| DNA-directed RNA polymerase subunit N [Sulfolobus islandicus
M.16.27]
gi|238620503|ref|YP_002915329.1| DNA-directed RNA polymerase subunit N [Sulfolobus islandicus
M.16.4]
gi|284998565|ref|YP_003420333.1| RNA polymerase N/8 Kd subunits [Sulfolobus islandicus L.D.8.5]
gi|385773991|ref|YP_005646558.1| RNA polymerase, subunit N [Sulfolobus islandicus HVE10/4]
gi|385776633|ref|YP_005649201.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus REY15A]
gi|259494370|sp|C3N058.1|RPON_SULIA RecName: Full=DNA-directed RNA polymerase subunit N
gi|259494371|sp|C4KJ97.1|RPON_SULIK RecName: Full=DNA-directed RNA polymerase subunit N
gi|259494372|sp|C3MJQ1.1|RPON_SULIL RecName: Full=DNA-directed RNA polymerase subunit N
gi|259494373|sp|C3MZ09.1|RPON_SULIM RecName: Full=DNA-directed RNA polymerase subunit N
gi|259494374|sp|C3NMP6.1|RPON_SULIN RecName: Full=DNA-directed RNA polymerase subunit N
gi|259494375|sp|C3N8S2.1|RPON_SULIY RecName: Full=DNA-directed RNA polymerase subunit N
gi|237823486|pdb|2WAQ|N Chain N, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823503|pdb|2WB1|N Chain N, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823504|pdb|2WB1|O Chain O, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462801|pdb|2Y0S|N Chain N, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|323462802|pdb|2Y0S|O Chain O, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase
In P21 Space Group
gi|400260752|pdb|4AYB|N Chain N, Rnap At 3.2ang
gi|400260769|pdb|4B1O|N Chain N, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260779|pdb|4B1P|O Chain O, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814449|gb|ACL36498.1| RNA polymerase subunit 10 [Sulfolobus shibatae B12]
gi|227457517|gb|ACP36204.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus L.S.2.15]
gi|227460107|gb|ACP38793.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus M.14.25]
gi|228010665|gb|ACP46427.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus Y.G.57.14]
gi|228012105|gb|ACP47866.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus Y.N.15.51]
gi|228020591|gb|ACP55998.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus M.16.27]
gi|238381573|gb|ACR42661.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus M.16.4]
gi|284446461|gb|ADB87963.1| RNA polymerase N/8 Kd subunits [Sulfolobus islandicus L.D.8.5]
gi|323475381|gb|ADX85987.1| RNA polymerase, N/8 Kd subunit [Sulfolobus islandicus REY15A]
gi|323478106|gb|ADX83344.1| RNA polymerase, subunit N [Sulfolobus islandicus HVE10/4]
Length = 66
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>gi|116753793|ref|YP_842911.1| DNA-directed RNA polymerase subunit N [Methanosaeta thermophila
PT]
gi|121694450|sp|A0B6E7.1|RPON_METTP RecName: Full=DNA-directed RNA polymerase subunit N
gi|116665244|gb|ABK14271.1| DNA-directed RNA polymerase, subunit N [Methanosaeta thermophila
PT]
Length = 61
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI + W+ Y + ++++ P G +D LG+ RYCCRRML++HV+++E L
Sbjct: 1 MIPVRCFSCGKVISSVWEEYRERIKSE-PPGKVMDDLGIERYCCRRMLLSHVEVVEMLRR 59
Query: 62 YN 63
Y
Sbjct: 60 YQ 61
>gi|298674290|ref|YP_003726040.1| RNA polymerase N/8 Kd subunit [Methanohalobium evestigatum
Z-7303]
gi|298287278|gb|ADI73244.1| RNA polymerase, N/8 Kd subunit [Methanohalobium evestigatum
Z-7303]
Length = 62
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IP+RCFTCGKVI N+W Y + ++ G LD LG+ RYCCRRM +THV+L++ L
Sbjct: 1 MIPIRCFTCGKVIANQWHEYKNRVEEGENSGAVLDDLGIKRYCCRRMFLTHVELVDTLAP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|11134415|sp|O59298.2|RPON_PYRHO RecName: Full=DNA-directed RNA polymerase subunit N
Length = 65
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYKV 64
>gi|337283753|ref|YP_004623227.1| DNA-directed RNA polymerase subunit N [Pyrococcus yayanosii CH1]
gi|334899687|gb|AEH23955.1| DNA-directed RNA polymerase subunit N [Pyrococcus yayanosii CH1]
Length = 65
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKARVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYRV 64
>gi|330834013|ref|YP_004408741.1| DNA-directed RNA polymerase subunit N [Metallosphaera cuprina
Ar-4]
gi|329566152|gb|AEB94257.1| DNA-directed RNA polymerase subunit N [Metallosphaera cuprina
Ar-4]
Length = 66
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG +I +KWD + ++A G LD L + R CCRR L+THVD+I +++
Sbjct: 1 MIIPVRCFTCGSLISDKWDVFSTRVKAGEDPGKVLDELNVKRLCCRRSLLTHVDIIREVV 60
Query: 61 NYN 63
NY
Sbjct: 61 NYT 63
>gi|269860361|ref|XP_002649902.1| DNA-directed RNA polymerases I, II, and III, subunit 10
[Enterocytozoon bieneusi H348]
gi|220066662|gb|EED44136.1| DNA-directed RNA polymerases I, II, and III, subunit 10
[Enterocytozoon bieneusi H348]
Length = 74
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCF+C K I +K++ YL+LL DALD LGL R CCRRM + HVD+ ++LL
Sbjct: 6 MIIPVRCFSCNKEISSKYEKYLELLSRGVSPADALDQLGLTRICCRRMYLGHVDIGDQLL 65
Query: 61 NY-NTLD 66
+ NT D
Sbjct: 66 QFENTED 72
>gi|389860857|ref|YP_006363097.1| DNA-directed RNA polymerase subunit N [Thermogladius
cellulolyticus 1633]
gi|388525761|gb|AFK50959.1| DNA-directed RNA polymerase subunit N [Thermogladius
cellulolyticus 1633]
Length = 68
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG IG+ W+ Y+ +QA G LD LG+ RYCCRRM ++HVD+++++L
Sbjct: 3 MLFPVRCFTCGAPIGHLWEDYIRRVQAGEDPGKVLDELGVKRYCCRRMFLSHVDIVKQVL 62
Query: 61 NY 62
+
Sbjct: 63 YF 64
>gi|14591404|ref|NP_143484.1| DNA-directed RNA polymerase subunit N [Pyrococcus horikoshii OT3]
gi|3258061|dbj|BAA30744.1| 119aa long hypothetical DNA-directed RNA polymerase subunit N
[Pyrococcus horikoshii OT3]
Length = 119
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
+IIPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 55 LIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 114
Query: 61 NYNT 64
+Y
Sbjct: 115 HYKV 118
>gi|14520750|ref|NP_126225.1| DNA-directed RNA polymerase subunit N [Pyrococcus abyssi GE5]
gi|397652708|ref|YP_006493289.1| DNA-directed RNA polymerase subunit N [Pyrococcus furiosus COM1]
gi|41019251|sp|P60291.1|RPON_PYRAB RecName: Full=DNA-directed RNA polymerase subunit N
gi|41019252|sp|P60292.1|RPON_PYRFU RecName: Full=DNA-directed RNA polymerase subunit N
gi|5457966|emb|CAB49456.1| rpoN DNA-directed RNA polymerase, subunit N [Pyrococcus abyssi
GE5]
gi|380741289|tpe|CCE69923.1| TPA: DNA-directed RNA polymerase subunit N [Pyrococcus abyssi
GE5]
gi|393190299|gb|AFN04997.1| DNA-directed RNA polymerase subunit N [Pyrococcus furiosus COM1]
Length = 65
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYRV 64
>gi|146304888|ref|YP_001192204.1| DNA-directed RNA polymerase subunit N [Metallosphaera sedula DSM
5348]
gi|172046962|sp|A4YIM8.1|RPON_METS5 RecName: Full=DNA-directed RNA polymerase subunit N
gi|145703138|gb|ABP96280.1| DNA-directed RNA polymerase, subunit N [Metallosphaera sedula DSM
5348]
Length = 66
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG +I +KWD + ++A G LD L + R CCRR L+THVD+I +++
Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVV 60
Query: 61 NYN 63
NY
Sbjct: 61 NYT 63
>gi|315229899|ref|YP_004070335.1| DNA-directed RNA polymerase subunit N [Thermococcus barophilus
MP]
gi|315182927|gb|ADT83112.1| DNA-directed RNA polymerase subunit N [Thermococcus barophilus
MP]
Length = 65
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + + ++ LD LGL RYCCRRML+THV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYIFKERVENGEDPEKVLDDLGLERYCCRRMLLTHVELIDDIM 60
Query: 61 NYNT 64
Y
Sbjct: 61 QYRV 64
>gi|300701557|ref|XP_002994989.1| hypothetical protein NCER_102312 [Nosema ceranae BRL01]
gi|239603452|gb|EEQ81318.1| hypothetical protein NCER_102312 [Nosema ceranae BRL01]
Length = 74
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTC K I +KW+ Y L+ D DAL+ L + R CCRRM + HV++I+KL+
Sbjct: 1 MLIPVRCFTCNKEISSKWEPYKYLINTDKSPADALNELDIKRICCRRMFLGHVEIIDKLI 60
Query: 61 NYNT 64
Y+
Sbjct: 61 KYDV 64
>gi|402589732|gb|EJW83663.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 50
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 46/67 (68%), Gaps = 17/67 (25%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIG DALDAL L RYCCRRML++HVDLI KLL
Sbjct: 1 MIIPIRCFTCGKVIG-----------------DALDALNLRRYCCRRMLLSHVDLIVKLL 43
Query: 61 NYNTLDK 67
+Y+ L+K
Sbjct: 44 DYHPLEK 50
>gi|18978015|ref|NP_579372.1| DNA-directed RNA polymerase subunit N [Pyrococcus furiosus DSM
3638]
gi|18893796|gb|AAL81767.1| DNA-directed RNA polymerase subunit n [Pyrococcus furiosus DSM
3638]
Length = 70
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
+I+PVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 6 VIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 65
Query: 61 NYNT 64
+Y
Sbjct: 66 HYRV 69
>gi|242398337|ref|YP_002993761.1| DNA-directed RNA polymerase subunit N [Thermococcus sibiricus MM
739]
gi|242264730|gb|ACS89412.1| DNA-directed RNA polymerase subunit N [Thermococcus sibiricus MM
739]
Length = 68
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
+I+PVRCFTCGKVIG+K+ + + ++ LD LGL RYCCRRM ++HV+LI++++
Sbjct: 4 LIVPVRCFTCGKVIGDKYYIFKERVEKGEDPEKVLDDLGLERYCCRRMFLSHVELIDEIM 63
Query: 61 NYNT 64
+Y
Sbjct: 64 HYRV 67
>gi|119719194|ref|YP_919689.1| DNA-directed RNA polymerase subunit N [Thermofilum pendens Hrk 5]
gi|119524314|gb|ABL77686.1| DNA-directed RNA polymerase, subunit N [Thermofilum pendens Hrk
5]
Length = 90
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ P+RCFTCG +IG+KW+ Y + LD LG+ RYCCRRM ++H + I+K++
Sbjct: 15 MMFPIRCFTCGALIGDKWNEYSTRVANGEDPNKVLDDLGITRYCCRRMFLSHTEAIDKII 74
Query: 61 NYNTLDK 67
Y ++++
Sbjct: 75 KYGSIEE 81
>gi|409096141|ref|ZP_11216165.1| DNA-directed RNA polymerase subunit N [Thermococcus zilligii AN1]
Length = 65
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++A LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKKRVEAGEDPVRVLDELGVERYCCRRTLLSHVELIDQVM 60
Query: 61 NYNT 64
Y
Sbjct: 61 EYKV 64
>gi|315425719|dbj|BAJ47375.1| DNA-directed RNA polymerase subunit N [Candidatus Caldiarchaeum
subterraneum]
gi|343484528|dbj|BAJ50182.1| DNA-directed RNA polymerase subunit N [Candidatus Caldiarchaeum
subterraneum]
Length = 72
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ P+RCF+CG+VI +KWD Y + D LD+LG RYCCRRM ++ V+++++L+
Sbjct: 1 MMFPIRCFSCGRVIAHKWDEYQRRVSEGQHPRDVLDSLGFKRYCCRRMFISAVNVMDELI 60
Query: 61 NYNTLDKSDTS 71
++ TS
Sbjct: 61 EFHQKYSEATS 71
>gi|409722491|ref|ZP_11269939.1| DNA-directed RNA polymerase subunit N [Halococcus hamelinensis
100A6]
gi|448724490|ref|ZP_21706997.1| DNA-directed RNA polymerase subunit N [Halococcus hamelinensis
100A6]
gi|445785807|gb|EMA36593.1| DNA-directed RNA polymerase subunit N [Halococcus hamelinensis
100A6]
Length = 63
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCG V+G W+ + ++ GD LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGSVVGEHWEAFESRIEDGEDPGDVLDDLGVKRHCCRRMLVSHTDLVDIVA 60
Query: 61 NYN 63
Y
Sbjct: 61 PYQ 63
>gi|336476948|ref|YP_004616089.1| RNA polymerase, N/8 Kd subunit [Methanosalsum zhilinae DSM 4017]
gi|335930329|gb|AEH60870.1| RNA polymerase, N/8 Kd subunit [Methanosalsum zhilinae DSM 4017]
Length = 62
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CG V+ +KWD Y + +D LG+VRYCCRRML++HV+L++ L
Sbjct: 1 MIPVRCFSCGSVVASKWDEYKQRVSLGEDPSAVMDDLGVVRYCCRRMLLSHVELVDTLAP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|240104019|ref|YP_002960328.1| DNA-directed RNA polymerase subunit N [Thermococcus gammatolerans
EJ3]
gi|239911573|gb|ACS34464.1| DNA-directed RNA polymerase subunit N (rpoN) [Thermococcus
gammatolerans EJ3]
Length = 70
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKV+ +K+ + ++A G LD LG+ RYCCRR L++HV+LI++++
Sbjct: 6 MIVPVRCFTCGKVLADKYYEFRKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVM 65
Query: 61 NYNT 64
Y
Sbjct: 66 VYKV 69
>gi|57641434|ref|YP_183912.1| DNA-directed RNA polymerase subunit N [Thermococcus kodakarensis
KOD1]
gi|223477889|ref|YP_002582348.1| DNA-directed RNA polymerase subunit N [Thermococcus sp. AM4]
gi|73917893|sp|Q5JJC9.1|RPON_PYRKO RecName: Full=DNA-directed RNA polymerase subunit N
gi|57159758|dbj|BAD85688.1| DNA-directed RNA polymerase subunit N [Thermococcus kodakarensis
KOD1]
gi|214033115|gb|EEB73943.1| DNA-directed RNA polymerase subunit N [Thermococcus sp. AM4]
Length = 65
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKV+ +K+ + ++A G LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 61 NYNT 64
Y
Sbjct: 61 VYKV 64
>gi|385805504|ref|YP_005841902.1| RNA polymerase, N/8 Kd subunits [Fervidicoccus fontis Kam940]
gi|383795367|gb|AFH42450.1| RNA polymerase, N/8 Kd subunits [Fervidicoccus fontis Kam940]
Length = 66
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRC+TCGK +G W+ + + + LD LG+ RYCCRR L++HVDLIE+++
Sbjct: 1 MIIPVRCYTCGKPLGQYWEPFKERVSKGEDPEKVLDDLGIDRYCCRRTLISHVDLIEQVI 60
Query: 61 NYNTL 65
+ +
Sbjct: 61 KFKPM 65
>gi|300711107|ref|YP_003736921.1| DNA-directed RNA polymerase subunit N [Halalkalicoccus jeotgali
B3]
gi|448296794|ref|ZP_21486845.1| DNA-directed RNA polymerase subunit N [Halalkalicoccus jeotgali
B3]
gi|299124790|gb|ADJ15129.1| DNA-directed RNA polymerase subunit N [Halalkalicoccus jeotgali
B3]
gi|445580777|gb|ELY35151.1| DNA-directed RNA polymerase subunit N [Halalkalicoccus jeotgali
B3]
Length = 63
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCG V+G W+ + ++ + LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGSVVGEHWEAFTSRVEEGEDPAEVLDDLGVTRHCCRRMLVSHTDLVDVVA 60
Query: 61 NYN 63
Y
Sbjct: 61 PYQ 63
>gi|357289746|gb|AET73059.1| hypothetical protein PGAG_00170 [Phaeocystis globosa virus 12T]
gi|357292546|gb|AET73882.1| hypothetical protein PGBG_00174 [Phaeocystis globosa virus 14T]
Length = 77
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 21/76 (27%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYL------------DLLQADY---------PEGDALDALG 39
M+IPV+CF+CGKV+ NK+D YL DL + Y PEG+A+D LG
Sbjct: 1 MLIPVKCFSCGKVLANKYDFYLREVQKQKLNNNVDLDKVTYLTKDFMEKTPEGEAMDKLG 60
Query: 40 LVRYCCRRMLMTHVDL 55
L++YCCRR ++THVD+
Sbjct: 61 LIKYCCRRHMLTHVDI 76
>gi|297527608|ref|YP_003669632.1| RNA polymerase, N/8 Kd subunit [Staphylothermus hellenicus DSM
12710]
gi|297256524|gb|ADI32733.1| RNA polymerase, N/8 Kd subunit [Staphylothermus hellenicus DSM
12710]
Length = 66
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG IG+ W+ + ++A G LD LG+ RYCCRRM ++H+D+ ++L
Sbjct: 1 MMFPVRCFTCGAPIGHLWEEFKKRVEAGEDPGKVLDDLGVKRYCCRRMFLSHIDISYEIL 60
Query: 61 NYNTLD 66
N+ +
Sbjct: 61 NFPKVS 66
>gi|118576790|ref|YP_876533.1| DNA-directed RNA polymerase, subunit N [Cenarchaeum symbiosum A]
gi|118195311|gb|ABK78229.1| DNA-directed RNA polymerase, subunit N [Cenarchaeum symbiosum A]
Length = 78
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCG ++ +K+ Y ++A G LD+LG+ RYCCRRML T ++ I++++
Sbjct: 1 MLVPVRCFTCGNLVADKFGEYKSRVEAGEAPGKVLDSLGMERYCCRRMLFTSIETIQQII 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|70605937|ref|YP_254807.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
DSM 639]
gi|449066129|ref|YP_007433211.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
N8]
gi|449068405|ref|YP_007435486.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
Ron12/I]
gi|730616|sp|P39472.1|RPON_SULAC RecName: Full=DNA-directed RNA polymerase subunit N
gi|581580|emb|CAA56484.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
gi|68566585|gb|AAY79514.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
DSM 639]
gi|449034637|gb|AGE70063.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
N8]
gi|449036913|gb|AGE72338.1| DNA-directed RNA polymerase subunit N [Sulfolobus acidocaldarius
Ron12/I]
Length = 66
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG V+ +KW+ + + + L LG+ RYCCRRML++HV++I +++
Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREII 60
Query: 61 NY 62
+Y
Sbjct: 61 HY 62
>gi|73668949|ref|YP_304964.1| DNA-directed RNA polymerase subunit N [Methanosarcina barkeri
str. Fusaro]
gi|121729512|sp|Q46CK8.1|RPON_METBF RecName: Full=DNA-directed RNA polymerase subunit N
gi|72396111|gb|AAZ70384.1| DNA-directed RNA polymerase, subunit N [Methanosarcina barkeri
str. Fusaro]
Length = 62
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRML++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|320101534|ref|YP_004177126.1| DNA-directed RNA polymerase subunit N [Desulfurococcus mucosus
DSM 2162]
gi|319753886|gb|ADV65644.1| DNA-directed RNA polymerase, subunit N [Desulfurococcus mucosus
DSM 2162]
Length = 66
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG+ IG+ WD Y+ ++ G LD LG+ RYCCRRM +++VD+ ++L
Sbjct: 1 MLFPVRCFTCGRPIGHLWDEYIKRVEQGEEPGKVLDDLGVKRYCCRRMFLSYVDVSREIL 60
Query: 61 NYNTLD 66
+ +
Sbjct: 61 YFPKIS 66
>gi|330508377|ref|YP_004384805.1| hypothetical protein MCON_2564 [Methanosaeta concilii GP6]
gi|328929185|gb|AEB68987.1| conserved domain protein [Methanosaeta concilii GP6]
Length = 61
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CG+VI + W+ Y + ++ + P G +D LG+ +YCCRRML++HV++++ L
Sbjct: 1 MIPVRCFSCGRVISHVWEEYRERIKTE-PPGKVMDDLGIDKYCCRRMLLSHVEIVDTLRR 59
Query: 62 YN 63
Y
Sbjct: 60 YQ 61
>gi|345004803|ref|YP_004807656.1| DNA-directed RNA polymerase subunit N [halophilic archaeon DL31]
gi|344320429|gb|AEN05283.1| DNA-directed RNA polymerase subunit N [halophilic archaeon DL31]
Length = 64
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDL-LQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCF+CGKVIG W+ + + + D G+ LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFSCGKVIGEHWEEFQERGREGDEDPGEVLDDLGVTRHCCRRMMVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|338715949|ref|XP_003363363.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Equus caballus]
Length = 79
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 44/67 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
+II VRCFTCG +I NK + L LLQA Y +G ALDALG C ML+ HV L E LL
Sbjct: 13 IIILVRCFTCGTIICNKLEACLGLLQAQYIKGAALDALGPKCICSHCMLLAHVHLTEWLL 72
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 73 NYAPLEK 79
>gi|327401469|ref|YP_004342308.1| DNA-directed RNA polymerase subunit N [Archaeoglobus veneficus
SNP6]
gi|327316977|gb|AEA47593.1| DNA-directed RNA polymerase subunit N [Archaeoglobus veneficus
SNP6]
Length = 66
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+ PVRCFTCG VI +KW+ Y L+ DALD LG+ RYCCRRM +T+ +I++
Sbjct: 1 MFPVRCFTCGAVIAHKWEEYSKKLEEGKSPKDALDELGINRYCCRRMFLTYKSVIKEFAR 60
Query: 62 YN 63
++
Sbjct: 61 FH 62
>gi|297302210|ref|XP_001119231.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like, partial [Macaca mulatta]
Length = 62
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 5 VRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT 64
VRCFTC K +GN W+ YL LLQA Y + DALGL C ML+ HVDLI+KLLNY
Sbjct: 3 VRCFTCSKTVGNTWEAYLGLLQAKYTDR---DALGLKHSSCCCMLLAHVDLIQKLLNYAL 59
Query: 65 LDK 67
L K
Sbjct: 60 LGK 62
>gi|407464179|ref|YP_006775061.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosopumilus
sp. AR2]
gi|407047367|gb|AFS82119.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosopumilus
sp. AR2]
Length = 78
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC TCGK+I +K+D Y + ++A LD+LG+ RYCCRRML+T V+ I++++
Sbjct: 1 MLIPVRCLTCGKLIADKFDDYQNKIKAGEDPTKTLDSLGVERYCCRRMLLTTVETIQQVI 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|170290626|ref|YP_001737442.1| DNA-directed RNA polymerase subunit N [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174706|gb|ACB07759.1| DNA-directed RNA polymerase, subunit N [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 67
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 45/64 (70%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+ P+RCFTCG VIG+KW+ + + A G+ LD++ + RYCCRRM ++H++L + L+
Sbjct: 1 MFPIRCFTCGSVIGDKWEEFSRRVMAGEDPGEVLDSMNIKRYCCRRMFLSHIELSDLELS 60
Query: 62 YNTL 65
++ L
Sbjct: 61 FSPL 64
>gi|448739238|ref|ZP_21721253.1| DNA-directed RNA polymerase subunit N [Halococcus thailandensis
JCM 13552]
gi|445799833|gb|EMA50202.1| DNA-directed RNA polymerase subunit N [Halococcus thailandensis
JCM 13552]
Length = 63
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCG V+G W+ + ++ G+ LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEAFESRVEDGEDPGEVLDDLGVNRHCCRRMLVSHTDLVDIVA 60
Query: 61 NYN 63
Y
Sbjct: 61 PYQ 63
>gi|126465719|ref|YP_001040828.1| DNA-directed RNA polymerase subunit N [Staphylothermus marinus
F1]
gi|158513386|sp|A3DMR0.1|RPON_STAMF RecName: Full=DNA-directed RNA polymerase subunit N
gi|126014542|gb|ABN69920.1| DNA-directed RNA polymerase, subunit N [Staphylothermus marinus
F1]
Length = 66
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG IG+ W+ + ++A G LD LG+ RYCCRRM ++H+++ ++L
Sbjct: 1 MMFPVRCFTCGAPIGHLWEEFKKRVEAGEDPGKVLDDLGVKRYCCRRMFLSHIEISYEIL 60
Query: 61 NYNTLD 66
N+ +
Sbjct: 61 NFPKVS 66
>gi|296243115|ref|YP_003650602.1| DNA-directed RNA polymerase subunit N [Thermosphaera aggregans
DSM 11486]
gi|296095699|gb|ADG91650.1| DNA-directed RNA polymerase, subunit N [Thermosphaera aggregans
DSM 11486]
Length = 66
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG IG+ W+ Y ++A G LD LG+ RYCCRRM +++VD+ +++L
Sbjct: 1 MLFPVRCFTCGAPIGHLWEEYEKRVKAGEQPGKVLDDLGVKRYCCRRMFLSYVDVSKEVL 60
Query: 61 NYNTLD 66
+ +
Sbjct: 61 QFPKIS 66
>gi|297290428|ref|XP_001103479.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Macaca mulatta]
Length = 79
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 5 VRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT 64
VRCFTC K +GN W+ YL LLQA Y + DAL L +CC ML+ HVDLI+KLLNY
Sbjct: 20 VRCFTCSKTVGNTWEAYLGLLQAKYTDRDALR-LKHYSHCC--MLLAHVDLIQKLLNYAL 76
Query: 65 LDK 67
L K
Sbjct: 77 LGK 79
>gi|325968482|ref|YP_004244674.1| RNA polymerase, N/8 Kd subunits [Vulcanisaeta moutnovskia 768-28]
gi|323707685|gb|ADY01172.1| RNA polymerase, N/8 Kd subunits [Vulcanisaeta moutnovskia 768-28]
Length = 68
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+P+RC+TCG+ +G+ W+ + +L+ + PE LD LG+ RYCCRR L+ H++LI+++
Sbjct: 1 MIVPIRCWTCGRPLGHLWEPFRQRVLKGENPE-KVLDDLGVTRYCCRRTLLAHIELIDRV 59
Query: 60 LNYNTLDKS 68
L Y+ ++
Sbjct: 60 LEYSRIESE 68
>gi|448728480|ref|ZP_21710808.1| DNA-directed RNA polymerase subunit N [Halococcus saccharolyticus
DSM 5350]
gi|445796962|gb|EMA47447.1| DNA-directed RNA polymerase subunit N [Halococcus saccharolyticus
DSM 5350]
Length = 63
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCGKV+G W+ + ++ D LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGKVVGEHWEPFEARVEDGEDPADVLDDLGVDRHCCRRMLVSHSDLVDIVA 60
Query: 61 NYN 63
Y
Sbjct: 61 PYQ 63
>gi|126460704|ref|YP_001056982.1| DNA-directed RNA polymerase subunit N [Pyrobaculum calidifontis
JCM 11548]
gi|158513500|sp|A3MXZ9.1|RPON_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit N
gi|126250425|gb|ABO09516.1| DNA-directed RNA polymerase, subunit N [Pyrobaculum calidifontis
JCM 11548]
Length = 66
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK +G+ + + + A G LD LG+VRYCCRR LM HV+ I+ LL
Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKKRVLAGEHPGRVLDELGVVRYCCRRTLMAHVEWIDDLL 60
Query: 61 NYN 63
Y
Sbjct: 61 VYE 63
>gi|448578446|ref|ZP_21643881.1| DNA-directed RNA polymerase subunit N [Haloferax larsenii JCM
13917]
gi|448592482|ref|ZP_21651589.1| DNA-directed RNA polymerase subunit N [Haloferax elongans ATCC
BAA-1513]
gi|445726987|gb|ELZ78603.1| DNA-directed RNA polymerase subunit N [Haloferax larsenii JCM
13917]
gi|445731487|gb|ELZ83071.1| DNA-directed RNA polymerase subunit N [Haloferax elongans ATCC
BAA-1513]
Length = 64
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCGKVIG WD + + D D LD LG+ R CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGKVIGEHWDEFKARAREGDEDPADVLDDLGVTRACCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|407461822|ref|YP_006773139.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045444|gb|AFS80197.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCG +I +K+D Y + ++A LD++G+ RYCCRRML+T V+ I++++
Sbjct: 1 MLIPVRCFTCGNLIADKYDDYQNKIKAGEDPEKTLDSVGVERYCCRRMLLTTVETIQQVI 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|167044114|gb|ABZ08797.1| putative RNA polymerases N / 8 kDa subunit [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 78
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCG ++ +K++ Y + +++ LD+LG+ RYCCRRML+T V+ I+++L
Sbjct: 1 MIVPVRCFTCGNLVADKFEEYQNRVKSGEEPAKILDSLGIDRYCCRRMLLTTVETIQQVL 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|21227860|ref|NP_633782.1| DNA-directed RNA polymerase subunit N [Methanosarcina mazei Go1]
gi|23822088|sp|Q8PW43.1|RPON_METMA RecName: Full=DNA-directed RNA polymerase subunit N
gi|20906273|gb|AAM31454.1| DNA-directed RNA polymerase subunit N [Methanosarcina mazei Go1]
Length = 62
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRM ++HV+LI+ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|374633847|ref|ZP_09706212.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Metallosphaera yellowstonensis MK1]
gi|373523635|gb|EHP68555.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Metallosphaera yellowstonensis MK1]
Length = 66
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG ++ +KW+ Y + A G LD L + + CCRR L+THVD+I +++
Sbjct: 1 MIIPIRCFTCGSLLADKWEIYSTRVGAGEDPGKVLDDLKVRKLCCRRTLLTHVDIIREVV 60
Query: 61 NYN 63
NY
Sbjct: 61 NYT 63
>gi|212223255|ref|YP_002306491.1| DNA-directed RNA polymerase subunit N [Thermococcus onnurineus
NA1]
gi|229564253|sp|B6YSQ7.1|RPON_THEON RecName: Full=DNA-directed RNA polymerase subunit N
gi|212008212|gb|ACJ15594.1| DNA-directed RNA polymerase subunit N [Thermococcus onnurineus
NA1]
Length = 65
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++ LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 61 NYNT 64
Y
Sbjct: 61 VYKV 64
>gi|20089487|ref|NP_615562.1| DNA-directed RNA polymerase subunit N [Methanosarcina acetivorans
C2A]
gi|23822098|sp|Q8TT41.1|RPON_METAC RecName: Full=DNA-directed RNA polymerase subunit N
gi|19914394|gb|AAM04042.1| DNA-directed RNA polymerase, subunit N [Methanosarcina
acetivorans C2A]
Length = 62
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRM ++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|219852953|ref|YP_002467385.1| DNA-directed RNA polymerase subunit N [Methanosphaerula palustris
E1-9c]
gi|254809290|sp|B8GEG1.1|RPON_METPE RecName: Full=DNA-directed RNA polymerase subunit N
gi|219547212|gb|ACL17662.1| RNA polymerase, N/8 Kd subunit [Methanosphaerula palustris E1-9c]
Length = 62
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ + A G LD LGL +YCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISTAWEEFKQRRDAGEDPGAILDDLGLTQYCCRRMLLTHKEIIDELNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|159042133|ref|YP_001541385.1| DNA-directed RNA polymerase subunit N [Caldivirga maquilingensis
IC-167]
gi|189043965|sp|A8M9S4.1|RPON_CALMQ RecName: Full=DNA-directed RNA polymerase subunit N
gi|157920968|gb|ABW02395.1| RNA polymerase, N/8 Kd subunits [Caldivirga maquilingensis
IC-167]
Length = 67
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RC+TCG+ +G+ W+ + + + A G LD L + RYCCRR L+ HV+LI ++L
Sbjct: 1 MIVPIRCWTCGRPLGHLWEPFRNRVLAGEDPGKVLDDLHVTRYCCRRTLLAHVELINQVL 60
Query: 61 NYNTLDK 67
Y ++K
Sbjct: 61 PYGLIEK 67
>gi|390960756|ref|YP_006424590.1| DNA-directed RNA polymerase subunit N [Thermococcus sp. CL1]
gi|390519064|gb|AFL94796.1| DNA-directed RNA polymerase subunit N [Thermococcus sp. CL1]
Length = 65
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++ LD LG+ RYCCRR L++HV+LI+ +
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGIERYCCRRTLLSHVELIDHAM 60
Query: 61 NYNT 64
Y
Sbjct: 61 QYRV 64
>gi|329765801|ref|ZP_08257367.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393795896|ref|ZP_10379260.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosoarchaeum
limnia BG20]
gi|329137644|gb|EGG41914.1| DNA-directed RNA polymerase subunit N [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 78
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCG +I +K++ Y + +++ LD+LG+ RYCCRRML+T V+ I++++
Sbjct: 1 MLIPVRCFTCGNLIADKYEEYQNKVKSGEDPAKGLDSLGIHRYCCRRMLLTTVETIQQVI 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|145592525|ref|YP_001154527.1| DNA-directed RNA polymerase subunit N [Pyrobaculum arsenaticum
DSM 13514]
gi|158514287|sp|A4WNA8.1|RPON_PYRAR RecName: Full=DNA-directed RNA polymerase subunit N
gi|145284293|gb|ABP51875.1| DNA-directed RNA polymerase, subunit N [Pyrobaculum arsenaticum
DSM 13514]
Length = 65
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK +G+ + + + A G LD LGLVRYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKQRVLAGEHPGKVLDDLGLVRYCCRRTLMAHVEWIDDVL 60
Query: 61 NYN 63
Y
Sbjct: 61 IYE 63
>gi|161527826|ref|YP_001581652.1| DNA-directed RNA polymerase subunit N [Nitrosopumilus maritimus
SCM1]
gi|160339127|gb|ABX12214.1| RNA polymerase, N/8 Kd subunit [Nitrosopumilus maritimus SCM1]
Length = 90
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCG +I +K+D Y + ++A L++LG+ RYCCRRML+T V+ I++++
Sbjct: 13 MLIPVRCFTCGNLIADKYDDYQNKIKAGEDPEKTLESLGIERYCCRRMLLTTVETIQQVI 72
Query: 61 NY 62
+
Sbjct: 73 PF 74
>gi|386876436|ref|ZP_10118550.1| DNA-directed RNA polymerase subunit N family protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386805760|gb|EIJ65265.1| DNA-directed RNA polymerase subunit N family protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 78
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCG ++ +K++ Y + L+A LD+LG+ RYCCRRML+T V+ I++++
Sbjct: 1 MLIPVRCFTCGNLVADKFEDYQNKLKAGEDPVKTLDSLGIERYCCRRMLLTTVETIQQVI 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|435851777|ref|YP_007313363.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Methanomethylovorans hollandica DSM 15978]
gi|433662407|gb|AGB49833.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Methanomethylovorans hollandica DSM 15978]
Length = 62
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI + WD Y + +D LG+ RYCCRR+L++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVIASSWDEYKRRTKDGEDPAQVMDDLGITRYCCRRILLSHVELVDTLAP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|257053581|ref|YP_003131414.1| DNA-directed RNA polymerase subunit N [Halorhabdus utahensis DSM
12940]
gi|256692344|gb|ACV12681.1| RNA polymerase, N/8 Kd subunit [Halorhabdus utahensis DSM 12940]
Length = 64
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDA-LDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIGN+W+ + + + + +A LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGNEWEEFKERAREGEEDPEAVLDELGVDRHCCRRMLVSHEDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448440162|ref|ZP_21588410.1| DNA-directed RNA polymerase subunit N [Halorubrum saccharovorum
DSM 1137]
gi|445690679|gb|ELZ42889.1| DNA-directed RNA polymerase subunit N [Halorubrum saccharovorum
DSM 1137]
Length = 64
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G+ LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGEVLDELGVDRHCCRRMLVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|429961498|gb|ELA41043.1| hypothetical protein VICG_01925 [Vittaforma corneae ATCC 50505]
Length = 66
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTC K+I N ++ YL LL+ AL+ +G+ R CCRRM++ HVD+ + LL
Sbjct: 1 MIIPVRCFTCNKLIANVYEDYLQLLRDGMHPNQALNKIGMARICCRRMVLGHVDIADLLL 60
Query: 61 NYNT 64
+
Sbjct: 61 KFEN 64
>gi|383320690|ref|YP_005381531.1| DNA-directed RNA polymerase, subunit N [Methanocella conradii
HZ254]
gi|379322060|gb|AFD01013.1| DNA-directed RNA polymerase, subunit N [Methanocella conradii
HZ254]
Length = 71
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 9/71 (12%)
Query: 2 IIPVRCFTCGKVIGNKWDTY---LDLLQADYPEG------DALDALGLVRYCCRRMLMTH 52
+IPVRCFTCGKVI N W+ Y ++ + P+G D LD LG+ RYCCRRML++H
Sbjct: 1 MIPVRCFTCGKVISNVWEEYRARVEERKRTLPKGEQLRVGDILDDLGVERYCCRRMLLSH 60
Query: 53 VDLIEKLLNYN 63
V+L++ L Y
Sbjct: 61 VELVDVLAPYQ 71
>gi|294496193|ref|YP_003542686.1| DNA-directed RNA polymerase, subunit N [Methanohalophilus mahii
DSM 5219]
gi|292667192|gb|ADE37041.1| DNA-directed RNA polymerase, subunit N [Methanohalophilus mahii
DSM 5219]
Length = 62
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
++PVRCFTCGKVI N W+ Y + LD LG+ RYCCRRM++ HV+LI+ +
Sbjct: 1 MLPVRCFTCGKVIANSWEDYKRRVDQGEAPAAVLDDLGISRYCCRRMILAHVELIDVVAP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|374327632|ref|YP_005085832.1| DNA-directed RNA polymerase subunit N [Pyrobaculum sp. 1860]
gi|356642901|gb|AET33580.1| DNA-directed RNA polymerase subunit N [Pyrobaculum sp. 1860]
Length = 66
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG+ +G+ + + + A G D+LG+ RYCCRR LM HV+ IE LL
Sbjct: 1 MIIPIRCFTCGRPLGHLYAVFKKRVLAGEHPGAVFDSLGVTRYCCRRTLMAHVEWIEDLL 60
Query: 61 NYN 63
Y
Sbjct: 61 VYE 63
>gi|124486060|ref|YP_001030676.1| DNA-directed RNA polymerase subunit N [Methanocorpusculum
labreanum Z]
gi|158512816|sp|A2SSV3.1|RPON_METLZ RecName: Full=DNA-directed RNA polymerase subunit N
gi|124363601|gb|ABN07409.1| DNA-directed RNA polymerase, subunit N [Methanocorpusculum
labreanum Z]
Length = 62
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ Y A + LD+LGL RYCCRRML++H + +++L
Sbjct: 1 MIPVRCFTCGKVISTVWEEYQQRKAAGEDPKEILDSLGLDRYCCRRMLLSHKETVDELYP 60
Query: 62 YN 63
Y
Sbjct: 61 YT 62
>gi|341582023|ref|YP_004762515.1| DNA-directed RNA polymerase subunit N [Thermococcus sp. 4557]
gi|340809681|gb|AEK72838.1| DNA-directed RNA polymerase subunit N [Thermococcus sp. 4557]
Length = 65
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++ LD LG+ RYCCRR L++HV+L++ +
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPERVLDDLGIERYCCRRTLLSHVELVDSAM 60
Query: 61 NYNT 64
Y
Sbjct: 61 KYRV 64
>gi|340344186|ref|ZP_08667318.1| RNA polymerase, N/8 Kd subunit [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519327|gb|EGP93050.1| RNA polymerase, N/8 Kd subunit [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 46/62 (74%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCG +I +K++ Y + +++ LD+LG+ RYCCRRML+T V+ I++++
Sbjct: 1 MLIPVRCFTCGNLIADKYEDYQNKVRSGEDPAKGLDSLGINRYCCRRMLLTTVETIQQVI 60
Query: 61 NY 62
+
Sbjct: 61 PF 62
>gi|448727619|ref|ZP_21709968.1| DNA-directed RNA polymerase subunit N [Halococcus morrhuae DSM
1307]
gi|445789605|gb|EMA40284.1| DNA-directed RNA polymerase subunit N [Halococcus morrhuae DSM
1307]
Length = 63
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCG V+G W+ + + D LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEAFESRVDEGEDPSDVLDDLGVDRHCCRRMLVSHTDLVDIVA 60
Query: 61 NYN 63
Y
Sbjct: 61 PYQ 63
>gi|435847144|ref|YP_007309394.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Natronococcus occultus SP4]
gi|433673412|gb|AGB37604.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Natronococcus occultus SP4]
Length = 64
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + Q D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANQGDEDPQEVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|167042941|gb|ABZ07655.1| putative RNA polymerases N / 8 kDa subunit [uncultured marine
crenarchaeote HF4000_ANIW137N18]
Length = 78
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCG ++ +K++ Y + +++ LD+LG+ RYCCRRM++T V+ I+++L
Sbjct: 1 MLVPVRCFTCGNLVADKFEEYQNRVKSGEEPAKILDSLGIDRYCCRRMMLTTVETIQQIL 60
Query: 61 N-YNTLDKSDTS 71
Y + K +T
Sbjct: 61 PFYEAMYKRNTE 72
>gi|448733723|ref|ZP_21715965.1| DNA-directed RNA polymerase subunit N [Halococcus salifodinae DSM
8989]
gi|445802243|gb|EMA52550.1| DNA-directed RNA polymerase subunit N [Halococcus salifodinae DSM
8989]
Length = 63
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M++PVRCFTCGKV+G W+ + ++ + LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGKVVGEHWEPFEARVEDGEDPAEVLDDLGVDRHCCRRMLVSHSDLVDIVA 60
Query: 61 NYN 63
Y
Sbjct: 61 PYQ 63
>gi|448474331|ref|ZP_21602190.1| DNA-directed RNA polymerase subunit N [Halorubrum aidingense JCM
13560]
gi|445817638|gb|EMA67507.1| DNA-directed RNA polymerase subunit N [Halorubrum aidingense JCM
13560]
Length = 64
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G+ LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEAFKERAREGDEDPGEVLDDLGVDRHCCRRMLISHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448611948|ref|ZP_21662378.1| DNA-directed RNA polymerase subunit N [Haloferax mucosum ATCC
BAA-1512]
gi|445742709|gb|ELZ94203.1| DNA-directed RNA polymerase subunit N [Haloferax mucosum ATCC
BAA-1512]
Length = 64
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG WD + + D D LD LG+ R CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFQARAREGDEDPADVLDELGVTRACCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|379005496|ref|YP_005261168.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Pyrobaculum
oguniense TE7]
gi|375160949|gb|AFA40561.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Pyrobaculum
oguniense TE7]
Length = 65
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG+ +G+ + + + A G LD LGLVRYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGRPLGHLYAVFKQRVLAGEHPGKVLDDLGLVRYCCRRTLMAHVEWIDDVL 60
Query: 61 NYN 63
Y
Sbjct: 61 IYE 63
>gi|448431134|ref|ZP_21584962.1| DNA-directed RNA polymerase subunit N [Halorubrum tebenquichense
DSM 14210]
gi|448453312|ref|ZP_21593755.1| DNA-directed RNA polymerase subunit N [Halorubrum litoreum JCM
13561]
gi|448460447|ref|ZP_21597272.1| DNA-directed RNA polymerase subunit N [Halorubrum lipolyticum DSM
21995]
gi|448465599|ref|ZP_21598865.1| DNA-directed RNA polymerase subunit N [Halorubrum kocurii JCM
14978]
gi|448485422|ref|ZP_21606647.1| DNA-directed RNA polymerase subunit N [Halorubrum arcis JCM
13916]
gi|448534350|ref|ZP_21621678.1| DNA-directed RNA polymerase subunit N [Halorubrum hochstenium
ATCC 700873]
gi|445688281|gb|ELZ40546.1| DNA-directed RNA polymerase subunit N [Halorubrum tebenquichense
DSM 14210]
gi|445704832|gb|ELZ56739.1| DNA-directed RNA polymerase subunit N [Halorubrum hochstenium
ATCC 700873]
gi|445807188|gb|EMA57274.1| DNA-directed RNA polymerase subunit N [Halorubrum lipolyticum DSM
21995]
gi|445807632|gb|EMA57715.1| DNA-directed RNA polymerase subunit N [Halorubrum litoreum JCM
13561]
gi|445814931|gb|EMA64879.1| DNA-directed RNA polymerase subunit N [Halorubrum kocurii JCM
14978]
gi|445818076|gb|EMA67943.1| DNA-directed RNA polymerase subunit N [Halorubrum arcis JCM
13916]
Length = 64
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G+ LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGEVLDDLGVDRHCCRRMLVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|347831022|emb|CCD46719.1| similar to DNA-directed RNA polymerases I/II/III subunit
[Botryotinia fuckeliana]
Length = 68
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 8/67 (11%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPV G+ W+ Y+ L+ +GDA+D L L RYCCRRM+MTHVDLIEKLL
Sbjct: 1 MIIPV--------TGDIWERYVKLIDEGVNDGDAMDELTLKRYCCRRMIMTHVDLIEKLL 52
Query: 61 NYNTLDK 67
YN ++
Sbjct: 53 RYNPAER 59
>gi|448322471|ref|ZP_21511941.1| DNA-directed RNA polymerase subunit N [Natronococcus amylolyticus
DSM 10524]
gi|445601229|gb|ELY55218.1| DNA-directed RNA polymerase subunit N [Natronococcus amylolyticus
DSM 10524]
Length = 64
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + Q D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANQGDEDPQEVLDDLGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|335433582|ref|ZP_08558402.1| DNA-directed RNA polymerase subunit N [Halorhabdus tiamatea
SARL4B]
gi|334898588|gb|EGM36692.1| DNA-directed RNA polymerase subunit N [Halorhabdus tiamatea
SARL4B]
Length = 64
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG++W+ + + + D + LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVIGSEWEEFKERAREGDEDPEEVLDDLGVERHCCRRMLVSHEDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|307594230|ref|YP_003900547.1| RNA polymerase N/8 Kd subunit [Vulcanisaeta distributa DSM 14429]
gi|307549431|gb|ADN49496.1| RNA polymerase, N/8 Kd subunit [Vulcanisaeta distributa DSM
14429]
Length = 68
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+P+RC+TCG+ +G+ W+ + +L + PE L+ LG+ RYCCRR L+ H++LI+++
Sbjct: 1 MIVPIRCWTCGRPLGHLWEPFKQRVLNGENPE-KVLNDLGVTRYCCRRTLLAHIELIDRV 59
Query: 60 LNYNTLDKS 68
L Y+ ++
Sbjct: 60 LEYSKIESE 68
>gi|14601602|ref|NP_148142.1| DNA-directed RNA polymerase subunit N [Aeropyrum pernix K1]
gi|11134833|sp|Q9YB47.1|RPON_AERPE RecName: Full=DNA-directed RNA polymerase subunit N
gi|5105438|dbj|BAA80751.1| DNA-directed RNA polymerase subunit N [Aeropyrum pernix K1]
Length = 77
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG+ +G+ W + +L+ + G+ALD LG+ RYCCRR L T V IE
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 61 NYN 63
Y
Sbjct: 61 KYR 63
>gi|154151757|ref|YP_001405375.1| DNA-directed RNA polymerase subunit N [Methanoregula boonei 6A8]
gi|166229331|sp|A7IAH1.1|RPON_METB6 RecName: Full=DNA-directed RNA polymerase subunit N
gi|154000309|gb|ABS56732.1| RNA polymerase N/8 Kd subunits [Methanoregula boonei 6A8]
Length = 62
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ Y + LD LG+ RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|448425443|ref|ZP_21582773.1| DNA-directed RNA polymerase subunit N [Halorubrum terrestre JCM
10247]
gi|448504673|ref|ZP_21614014.1| DNA-directed RNA polymerase subunit N [Halorubrum distributum JCM
9100]
gi|448519092|ref|ZP_21617868.1| DNA-directed RNA polymerase subunit N [Halorubrum distributum JCM
10118]
gi|445680514|gb|ELZ32957.1| DNA-directed RNA polymerase subunit N [Halorubrum terrestre JCM
10247]
gi|445701883|gb|ELZ53855.1| DNA-directed RNA polymerase subunit N [Halorubrum distributum JCM
9100]
gi|445704108|gb|ELZ56026.1| DNA-directed RNA polymerase subunit N [Halorubrum distributum JCM
10118]
Length = 64
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G+ LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGEVLDDLGVDRHCCRRMMVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|433418971|ref|ZP_20405130.1| DNA-directed RNA polymerase subunit N [Haloferax sp. BAB2207]
gi|448546354|ref|ZP_21626518.1| DNA-directed RNA polymerase subunit N [Haloferax sp. ATCC
BAA-646]
gi|448548341|ref|ZP_21627608.1| DNA-directed RNA polymerase subunit N [Haloferax sp. ATCC
BAA-645]
gi|448557535|ref|ZP_21632724.1| DNA-directed RNA polymerase subunit N [Haloferax sp. ATCC
BAA-644]
gi|448565313|ref|ZP_21636180.1| DNA-directed RNA polymerase subunit N [Haloferax prahovense DSM
18310]
gi|448568224|ref|ZP_21637801.1| DNA-directed RNA polymerase subunit N [Haloferax lucentense DSM
14919]
gi|448583263|ref|ZP_21646619.1| DNA-directed RNA polymerase subunit N [Haloferax gibbonsii ATCC
33959]
gi|448600835|ref|ZP_21656214.1| DNA-directed RNA polymerase subunit N [Haloferax alexandrinus JCM
10717]
gi|448602314|ref|ZP_21656370.1| DNA-directed RNA polymerase subunit N [Haloferax sulfurifontis
ATCC BAA-897]
gi|448622867|ref|ZP_21669516.1| DNA-directed RNA polymerase subunit N [Haloferax denitrificans
ATCC 35960]
gi|432199579|gb|ELK55740.1| DNA-directed RNA polymerase subunit N [Haloferax sp. BAB2207]
gi|445702807|gb|ELZ54747.1| DNA-directed RNA polymerase subunit N [Haloferax sp. ATCC
BAA-646]
gi|445714092|gb|ELZ65859.1| DNA-directed RNA polymerase subunit N [Haloferax sp. ATCC
BAA-644]
gi|445714436|gb|ELZ66198.1| DNA-directed RNA polymerase subunit N [Haloferax sp. ATCC
BAA-645]
gi|445715057|gb|ELZ66813.1| DNA-directed RNA polymerase subunit N [Haloferax prahovense DSM
18310]
gi|445727174|gb|ELZ78788.1| DNA-directed RNA polymerase subunit N [Haloferax lucentense DSM
14919]
gi|445729492|gb|ELZ81087.1| DNA-directed RNA polymerase subunit N [Haloferax gibbonsii ATCC
33959]
gi|445734848|gb|ELZ86404.1| DNA-directed RNA polymerase subunit N [Haloferax alexandrinus JCM
10717]
gi|445747829|gb|ELZ99283.1| DNA-directed RNA polymerase subunit N [Haloferax sulfurifontis
ATCC BAA-897]
gi|445753375|gb|EMA04792.1| DNA-directed RNA polymerase subunit N [Haloferax denitrificans
ATCC 35960]
Length = 64
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG WD + + D D LD LG+ R CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKARAREGDEDPADVLDDLGVTRACCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448306197|ref|ZP_21496106.1| DNA-directed RNA polymerase subunit N [Natronorubrum bangense JCM
10635]
gi|445598611|gb|ELY52666.1| DNA-directed RNA polymerase subunit N [Natronorubrum bangense JCM
10635]
Length = 64
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCF+CG V+G W+ + + Q D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFSCGTVVGEHWEEFDERAQEGDEDPQEVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448499370|ref|ZP_21611297.1| DNA-directed RNA polymerase subunit N [Halorubrum coriense DSM
10284]
gi|445697325|gb|ELZ49390.1| DNA-directed RNA polymerase subunit N [Halorubrum coriense DSM
10284]
Length = 64
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G+ LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGEVLDDLGVDRHCCRRMIVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448303020|ref|ZP_21492970.1| DNA-directed RNA polymerase subunit N [Natronorubrum
sulfidifaciens JCM 14089]
gi|445594027|gb|ELY48194.1| DNA-directed RNA polymerase subunit N [Natronorubrum
sulfidifaciens JCM 14089]
Length = 64
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCF+CG V+G W+ + + Q D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFSCGTVVGEHWEEFDERAQEGDEDPEEVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|307352916|ref|YP_003893967.1| RNA polymerase subunit N [Methanoplanus petrolearius DSM 11571]
gi|307156149|gb|ADN35529.1| RNA polymerase, N/8 Kd subunit [Methanoplanus petrolearius DSM
11571]
Length = 62
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI +++ Y L+A + LD LGL RYCCRRML++H ++I+ L
Sbjct: 1 MIPVRCFTCGKVISTEYEEYKKRLEAGEDIREILDDLGLERYCCRRMLLSHKEIIDDLNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|448491310|ref|ZP_21608251.1| DNA-directed RNA polymerase subunit N [Halorubrum californiensis
DSM 19288]
gi|445693081|gb|ELZ45243.1| DNA-directed RNA polymerase subunit N [Halorubrum californiensis
DSM 19288]
Length = 64
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + D G+ LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKQRAREGDEDPGEVLDDLGVDRHCCRRMLVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448317554|ref|ZP_21507104.1| DNA-directed RNA polymerase subunit N [Natronococcus jeotgali DSM
18795]
gi|445602945|gb|ELY56915.1| DNA-directed RNA polymerase subunit N [Natronococcus jeotgali DSM
18795]
Length = 64
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + Q D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANQGDEDPQKVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|359415896|ref|ZP_09208281.1| DNA-directed RNA polymerase subunit N [Candidatus Haloredivivus
sp. G17]
gi|358033746|gb|EHK02266.1| DNA-directed RNA polymerase subunit N [Candidatus Haloredivivus
sp. G17]
Length = 65
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M PVRC +CGKVIG+KWD + + ++ +G+ LD LG+ +YCCR + +T+V+ I+++
Sbjct: 1 MQFPVRCLSCGKVIGDKWDEFQERVEEGEDKGEVLDDLGVEKYCCRTVFLTNVESIDEIG 60
Query: 61 NYN 63
Y
Sbjct: 61 EYQ 63
>gi|255513542|gb|EET89808.1| RNA polymerase, N/8 Kd subunit [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 69
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGD-ALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+ +KW+ Y + + + + LD LG RYCCRRM +++V+LI++
Sbjct: 4 MMMPVRCFTCGAVVADKWEEYNNRVNKNGEDASKVLDELGFKRYCCRRMFISNVELIDEF 63
Query: 60 LN 61
+N
Sbjct: 64 IN 65
>gi|171186415|ref|YP_001795334.1| DNA-directed RNA polymerase subunit N [Pyrobaculum neutrophilum
V24Sta]
gi|229564252|sp|B1YC34.1|RPON_THENV RecName: Full=DNA-directed RNA polymerase subunit N
gi|170935627|gb|ACB40888.1| RNA polymerase, N/8 Kd subunit [Pyrobaculum neutrophilum V24Sta]
Length = 66
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG+ +G+ + + + A G+ LD+LG+ RYCCRR L++HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGRPLGHLYPIFKRRVLAGERPGEVLDSLGVYRYCCRRTLLSHVEWIDDVL 60
Query: 61 NYN 63
Y
Sbjct: 61 AYE 63
>gi|222480235|ref|YP_002566472.1| DNA-directed RNA polymerase subunit N [Halorubrum lacusprofundi
ATCC 49239]
gi|254809291|sp|B9LPW4.1|RPON_HALLT RecName: Full=DNA-directed RNA polymerase subunit N
gi|222453137|gb|ACM57402.1| RNA polymerase, N/8 Kd subunit [Halorubrum lacusprofundi ATCC
49239]
Length = 64
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGKVLDELGVDRHCCRRMMVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|110668830|ref|YP_658641.1| DNA-directed RNA polymerase subunit N [Haloquadratum walsbyi DSM
16790]
gi|385804348|ref|YP_005840748.1| DNA-directed RNA polymerase subunit N [Haloquadratum walsbyi C23]
gi|121684704|sp|Q18G60.1|RPON_HALWD RecName: Full=DNA-directed RNA polymerase subunit N
gi|109626577|emb|CAJ53041.1| DNA-directed RNA polymerase subunit N [Haloquadratum walsbyi DSM
16790]
gi|339729840|emb|CCC41123.1| DNA-directed RNA polymerase subunit N [Haloquadratum walsbyi C23]
Length = 64
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG WD + + + G+ LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKQRARDGNEDPGEVLDDLGIKRHCCRRMMVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 APYQ 64
>gi|448352733|ref|ZP_21541514.1| DNA-directed RNA polymerase subunit N [Natrialba hulunbeirensis
JCM 10989]
gi|448358765|ref|ZP_21547441.1| DNA-directed RNA polymerase subunit N [Natrialba chahannaoensis
JCM 10990]
gi|445642012|gb|ELY95083.1| DNA-directed RNA polymerase subunit N [Natrialba hulunbeirensis
JCM 10989]
gi|445644779|gb|ELY97788.1| DNA-directed RNA polymerase subunit N [Natrialba chahannaoensis
JCM 10990]
Length = 64
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVGEHWEEFDERANEGDEDPQEVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|327311718|ref|YP_004338615.1| DNA-directed RNA polymerase subunit N [Thermoproteus uzoniensis
768-20]
gi|326948197|gb|AEA13303.1| DNA-directed RNA polymerase subunit N [Thermoproteus uzoniensis
768-20]
Length = 65
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ P+RCFTCG+ +G+ W+ + + A G LD LG+ RYCCRR L+ HVD I+ +L
Sbjct: 1 MMAPIRCFTCGRPLGHLWEPFKRRVLAGEDPGKVLDELGVTRYCCRRTLLAHVDWIDDVL 60
Query: 61 NYNT 64
+
Sbjct: 61 KFEA 64
>gi|11498730|ref|NP_069959.1| DNA-directed RNA polymerase subunit N [Archaeoglobus fulgidus DSM
4304]
gi|11134392|sp|O29135.1|RPON_ARCFU RecName: Full=DNA-directed RNA polymerase subunit N
gi|2649465|gb|AAB90120.1| DNA-directed RNA polymerase, subunit N (rpoN) [Archaeoglobus
fulgidus DSM 4304]
Length = 76
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 3 IPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 62
P+RCF+CG VIG+ +D Y L +ALD LG+ RYCCRRM +TH +I++L +
Sbjct: 12 FPIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRF 71
Query: 63 N 63
+
Sbjct: 72 H 72
>gi|440791521|gb|ELR12759.1| hypothetical protein ACA1_092940 [Acanthamoeba castellanii str.
Neff]
Length = 64
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/37 (81%), Positives = 34/37 (91%)
Query: 32 GDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKS 68
DALDALGL RYCCRRML+THVDLIEKLLNYNT +++
Sbjct: 24 SDALDALGLRRYCCRRMLLTHVDLIEKLLNYNTFERT 60
>gi|448414202|ref|ZP_21577341.1| DNA-directed RNA polymerase subunit N [Halosarcina pallida JCM
14848]
gi|445682495|gb|ELZ34912.1| DNA-directed RNA polymerase subunit N [Halosarcina pallida JCM
14848]
Length = 64
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G WD + + D + LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWDEFKARAREGDEDPAEVLDDLGVERHCCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 APYQ 64
>gi|147921493|ref|YP_684692.1| DNA-directed RNA polymerase subunit N [Methanocella arvoryzae
MRE50]
gi|121683243|sp|Q0W8C7.1|RPON_UNCMA RecName: Full=DNA-directed RNA polymerase subunit N
gi|110620088|emb|CAJ35366.1| DNA-directed RNA polymerase, subunit N [Methanocella arvoryzae
MRE50]
Length = 71
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Query: 2 IIPVRCFTCGKVIGNKWDTY--------LDLLQADYPE-GDALDALGLVRYCCRRMLMTH 52
+IPVRCFTCGKVI W+ Y ++L + + GD LD LG+ RYCCRRML++H
Sbjct: 1 MIPVRCFTCGKVISEVWEEYKARVEERKMNLQHGEVLKVGDILDDLGVERYCCRRMLLSH 60
Query: 53 VDLIEKLLNYN 63
V+L++ L Y
Sbjct: 61 VELVDVLAPYQ 71
>gi|399576709|ref|ZP_10770464.1| DNA-directed RNA polymerase subunit N [Halogranum salarium B-1]
gi|399238153|gb|EJN59082.1| DNA-directed RNA polymerase subunit N [Halogranum salarium B-1]
Length = 64
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VI W+ + + D G+ LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVIAEHWEEFKSRAREGDEDPGEVLDELGVERHCCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|429192485|ref|YP_007178163.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Natronobacterium gregoryi SP2]
gi|448325897|ref|ZP_21515275.1| DNA-directed RNA polymerase subunit N [Natronobacterium gregoryi
SP2]
gi|429136703|gb|AFZ73714.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Natronobacterium gregoryi SP2]
gi|445613989|gb|ELY67674.1| DNA-directed RNA polymerase subunit N [Natronobacterium gregoryi
SP2]
Length = 64
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGSVVGEHWEEFDERANEGDEDPQEVLDDLGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448712007|ref|ZP_21701550.1| DNA-directed RNA polymerase subunit N [Halobiforma
nitratireducens JCM 10879]
gi|445791092|gb|EMA41741.1| DNA-directed RNA polymerase subunit N [Halobiforma
nitratireducens JCM 10879]
Length = 64
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGSVVGEHWEEFDERANEGDEDPKEVLDDLGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|313126013|ref|YP_004036283.1| DNA-directed RNA polymerase subunit n [Halogeometricum
borinquense DSM 11551]
gi|448285853|ref|ZP_21477092.1| DNA-directed RNA polymerase subunit N [Halogeometricum
borinquense DSM 11551]
gi|312292378|gb|ADQ66838.1| DNA-directed RNA polymerase, subunit N [Halogeometricum
borinquense DSM 11551]
gi|445575883|gb|ELY30346.1| DNA-directed RNA polymerase subunit N [Halogeometricum
borinquense DSM 11551]
Length = 64
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G WD + + D LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWDEFKARAREGDENPAKVLDELGVERHCCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 APYQ 64
>gi|389848210|ref|YP_006350449.1| DNA-directed RNA polymerase subunit N [Haloferax mediterranei
ATCC 33500]
gi|448618418|ref|ZP_21666655.1| DNA-directed RNA polymerase subunit N [Haloferax mediterranei
ATCC 33500]
gi|388245516|gb|AFK20462.1| DNA-directed RNA polymerase subunit N [Haloferax mediterranei
ATCC 33500]
gi|445746789|gb|ELZ98247.1| DNA-directed RNA polymerase subunit N [Haloferax mediterranei
ATCC 33500]
Length = 64
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG WD + + D D LD LG+ R CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKARARDGDEDPADVLDDLGVTRACCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|383621944|ref|ZP_09948350.1| DNA-directed RNA polymerase subunit N [Halobiforma lacisalsi AJ5]
gi|448314280|ref|ZP_21503980.1| DNA-directed RNA polymerase subunit N [Natronolimnobius
innermongolicus JCM 12255]
gi|448702869|ref|ZP_21700226.1| DNA-directed RNA polymerase subunit N [Halobiforma lacisalsi AJ5]
gi|445595540|gb|ELY49646.1| DNA-directed RNA polymerase subunit N [Natronolimnobius
innermongolicus JCM 12255]
gi|445776962|gb|EMA27938.1| DNA-directed RNA polymerase subunit N [Halobiforma lacisalsi AJ5]
Length = 64
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANEGDEDPQEVLDDLGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|242022494|ref|XP_002431675.1| transcription initiation factor supt3, putative [Pediculus humanus
corporis]
gi|212516983|gb|EEB18937.1| transcription initiation factor supt3, putative [Pediculus humanus
corporis]
Length = 317
Score = 67.8 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/36 (83%), Positives = 32/36 (88%)
Query: 32 GDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
GDALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 282 GDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 317
>gi|126179750|ref|YP_001047715.1| DNA-directed RNA polymerase subunit N [Methanoculleus marisnigri
JR1]
gi|158513237|sp|A3CWI3.1|RPON_METMJ RecName: Full=DNA-directed RNA polymerase subunit N
gi|125862544|gb|ABN57733.1| DNA-directed RNA polymerase, subunit N [Methanoculleus marisnigri
JR1]
Length = 62
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKV+ W + + A LD LGL RYCCRRML+TH + +E L
Sbjct: 1 MIPVRCFTCGKVVSTAWKEFKERRDAGEDPKRILDDLGLERYCCRRMLLTHKETVEDLNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|380800093|gb|AFE71922.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5,
partial [Macaca mulatta]
gi|380800095|gb|AFE71923.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5,
partial [Macaca mulatta]
Length = 39
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 34/39 (87%)
Query: 29 YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 1 YTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 39
>gi|55377003|ref|YP_134853.1| DNA-directed RNA polymerase subunit N [Haloarcula marismortui
ATCC 43049]
gi|448630476|ref|ZP_21673131.1| DNA-directed RNA polymerase subunit N [Haloarcula vallismortis
ATCC 29715]
gi|448640846|ref|ZP_21677633.1| DNA-directed RNA polymerase subunit N [Haloarcula sinaiiensis
ATCC 33800]
gi|448651244|ref|ZP_21680313.1| DNA-directed RNA polymerase subunit N [Haloarcula californiae
ATCC 33799]
gi|448667516|ref|ZP_21686016.1| DNA-directed RNA polymerase subunit N [Haloarcula amylolytica JCM
13557]
gi|448678701|ref|ZP_21689708.1| DNA-directed RNA polymerase subunit N [Haloarcula argentinensis
DSM 12282]
gi|448689114|ref|ZP_21694851.1| DNA-directed RNA polymerase subunit N [Haloarcula japonica DSM
6131]
gi|141413|sp|P29199.1|RPON_HALMA RecName: Full=DNA-directed RNA polymerase subunit N
gi|148779|gb|AAA73099.1| OrfMMV [Haloarcula marismortui]
gi|55229728|gb|AAV45147.1| DNA-directed RNA polymerase subunit N [Haloarcula marismortui
ATCC 43049]
gi|445756399|gb|EMA07774.1| DNA-directed RNA polymerase subunit N [Haloarcula vallismortis
ATCC 29715]
gi|445761371|gb|EMA12619.1| DNA-directed RNA polymerase subunit N [Haloarcula sinaiiensis
ATCC 33800]
gi|445770084|gb|EMA21152.1| DNA-directed RNA polymerase subunit N [Haloarcula amylolytica JCM
13557]
gi|445770771|gb|EMA21829.1| DNA-directed RNA polymerase subunit N [Haloarcula californiae
ATCC 33799]
gi|445772688|gb|EMA23733.1| DNA-directed RNA polymerase subunit N [Haloarcula argentinensis
DSM 12282]
gi|445778984|gb|EMA29926.1| DNA-directed RNA polymerase subunit N [Haloarcula japonica DSM
6131]
Length = 66
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPE--GDALDALGLVRYCCRRMLMTHVDLIE 57
M++PVRCFTCG V+G W+ + +A+ PE LD LG+ R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 58 KLLNYN 63
+ Y
Sbjct: 61 IVSPYQ 66
>gi|292656894|ref|YP_003536791.1| DNA-directed RNA polymerase subunit N [Haloferax volcanii DS2]
gi|448290894|ref|ZP_21482039.1| DNA-directed RNA polymerase subunit N [Haloferax volcanii DS2]
gi|291372277|gb|ADE04504.1| DNA-directed RNA polymerase subunit N [Haloferax volcanii DS2]
gi|445577947|gb|ELY32367.1| DNA-directed RNA polymerase subunit N [Haloferax volcanii DS2]
Length = 64
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG WD + + D + LD LG+ R CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKARAREGDEDPAEVLDDLGVTRACCRRMMVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|354610851|ref|ZP_09028807.1| DNA-directed RNA polymerase subunit N [Halobacterium sp. DL1]
gi|353195671|gb|EHB61173.1| DNA-directed RNA polymerase subunit N [Halobacterium sp. DL1]
Length = 66
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY---LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIE 57
M++PVRCFTCG V+G W+ + D D D LD LG+ R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVGEYWEEFKARADSHDGDEDPADVLDDLGVDRHCCRRMLISHQDLVD 60
Query: 58 KLLNYN 63
+ Y
Sbjct: 61 VVSPYQ 66
>gi|322510709|gb|ADX06023.1| DNA-directed RNA polymerase II Rpb10 [Organic Lake phycodnavirus
1]
Length = 74
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 44/74 (59%), Gaps = 18/74 (24%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL---------QADY---------PEGDALDALGLVR 42
MIIPV+CFTCGKVI NK+ YLD + + +Y PEG LD L LV
Sbjct: 1 MIIPVKCFTCGKVIANKYQKYLDKVGELKKDKSQEINYLDTSNIEKTPEGKVLDELDLVD 60
Query: 43 YCCRRMLMTHVDLI 56
CCRR ++THVD++
Sbjct: 61 ICCRRHMLTHVDIL 74
>gi|119872207|ref|YP_930214.1| DNA-directed RNA polymerase subunit N [Pyrobaculum islandicum DSM
4184]
gi|158512994|sp|A1RSD9.1|RPON_PYRIL RecName: Full=DNA-directed RNA polymerase subunit N
gi|119673615|gb|ABL87871.1| DNA-directed RNA polymerase, subunit N [Pyrobaculum islandicum
DSM 4184]
Length = 66
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCFTCGK +G+ + T+ + A G LD LG+ RYCCRR L+ HV+ I+ LL
Sbjct: 1 MIVPIRCFTCGKPLGHLYITFKHRVLAGEHPGRVLDELGVHRYCCRRTLIAHVEWIDDLL 60
Query: 61 NYN 63
Y
Sbjct: 61 VYE 63
>gi|452207489|ref|YP_007487611.1| DNA-directed RNA polymerase subunit N [Natronomonas moolapensis
8.8.11]
gi|452083589|emb|CCQ36901.1| DNA-directed RNA polymerase subunit N [Natronomonas moolapensis
8.8.11]
Length = 64
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D + LD LG+ R CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGSVVGEHWEEFKERAREGDEDPAEVLDELGVERACCRRMLVSHKDLVDIV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|289580111|ref|YP_003478577.1| RNA polymerase, N/8 Kd subunit [Natrialba magadii ATCC 43099]
gi|448281350|ref|ZP_21472656.1| DNA-directed RNA polymerase subunit N [Natrialba magadii ATCC
43099]
gi|448298710|ref|ZP_21488737.1| DNA-directed RNA polymerase subunit N [Natronorubrum tibetense
GA33]
gi|448348758|ref|ZP_21537606.1| DNA-directed RNA polymerase subunit N [Natrialba taiwanensis DSM
12281]
gi|448361731|ref|ZP_21550344.1| DNA-directed RNA polymerase subunit N [Natrialba asiatica DSM
12278]
gi|448368980|ref|ZP_21555747.1| DNA-directed RNA polymerase subunit N [Natrialba aegyptia DSM
13077]
gi|289529664|gb|ADD04015.1| RNA polymerase, N/8 Kd subunit [Natrialba magadii ATCC 43099]
gi|445578772|gb|ELY33172.1| DNA-directed RNA polymerase subunit N [Natrialba magadii ATCC
43099]
gi|445591012|gb|ELY45223.1| DNA-directed RNA polymerase subunit N [Natronorubrum tibetense
GA33]
gi|445642419|gb|ELY95487.1| DNA-directed RNA polymerase subunit N [Natrialba taiwanensis DSM
12281]
gi|445649411|gb|ELZ02348.1| DNA-directed RNA polymerase subunit N [Natrialba asiatica DSM
12278]
gi|445651523|gb|ELZ04431.1| DNA-directed RNA polymerase subunit N [Natrialba aegyptia DSM
13077]
Length = 64
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVGEHWEEFDERANEGDEDPEKVLDELGVDRYCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|91774300|ref|YP_566992.1| DNA-directed RNA polymerase subunit N [Methanococcoides burtonii
DSM 6242]
gi|121689013|sp|Q12TI4.1|RPON_METBU RecName: Full=DNA-directed RNA polymerase subunit N
gi|91713315|gb|ABE53242.1| DNA-directed RNA polymerase subunit N [Methanococcoides burtonii
DSM 6242]
Length = 62
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ Y LD L VRYCCRRM + HV+L++ +
Sbjct: 1 MIPVRCFTCGKVIAGSWEEYKRRTGEGEDPATVLDDLKFVRYCCRRMFLAHVELVDTMAP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|336252148|ref|YP_004595255.1| DNA-directed RNA polymerase subunit N [Halopiger xanaduensis
SH-6]
gi|335336137|gb|AEH35376.1| DNA-directed RNA polymerase subunit N [Halopiger xanaduensis
SH-6]
Length = 64
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANEGDEDPEKVLDELGVDRYCCRRMLVSHTDLVDIV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|13541968|ref|NP_111656.1| DNA-directed RNA polymerase subunit N [Thermoplasma volcanium
GSS1]
gi|21263955|sp|Q979K0.1|RPON_THEVO RecName: Full=DNA-directed RNA polymerase subunit N
gi|14325399|dbj|BAB60303.1| DNA-directed RNA polymerase N [Thermoplasma volcanium GSS1]
Length = 72
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDA---------LDALGLVRYCCRRMLMT 51
MIIPVRCF+CG+VI + + YL + EG D LG+ RYCCRRM+++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYLRRINEIRSEGREPTAEEIEKIFDDLGVERYCCRRMIIS 60
Query: 52 HVDLIEKLLNYN 63
HVDLI +++ ++
Sbjct: 61 HVDLINEIMPFS 72
>gi|448409413|ref|ZP_21574711.1| DNA-directed RNA polymerase subunit N [Halosimplex carlsbadense
2-9-1]
gi|445673016|gb|ELZ25583.1| DNA-directed RNA polymerase subunit N [Halosimplex carlsbadense
2-9-1]
Length = 66
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 5/67 (7%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY----LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLI 56
M++PVRCFTCG V+G W+ + + +A+ PE LD LG+ R+CCRRML++H DL+
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFKARTREAEEAEDPE-KVLDDLGVERHCCRRMLVSHKDLV 59
Query: 57 EKLLNYN 63
+ + Y
Sbjct: 60 DIVAPYQ 66
>gi|433590981|ref|YP_007280477.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Natrinema
pellirubrum DSM 15624]
gi|448334514|ref|ZP_21523689.1| DNA-directed RNA polymerase subunit N [Natrinema pellirubrum DSM
15624]
gi|448385456|ref|ZP_21563962.1| DNA-directed RNA polymerase subunit N [Haloterrigena
thermotolerans DSM 11522]
gi|433305761|gb|AGB31573.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Natrinema
pellirubrum DSM 15624]
gi|445619846|gb|ELY73363.1| DNA-directed RNA polymerase subunit N [Natrinema pellirubrum DSM
15624]
gi|445656951|gb|ELZ09783.1| DNA-directed RNA polymerase subunit N [Haloterrigena
thermotolerans DSM 11522]
Length = 64
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANEGDEDPEKVLDELGVDRYCCRRMLVSHEDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|16081553|ref|NP_393909.1| DNA-directed RNA polymerase subunit N [Thermoplasma acidophilum
DSM 1728]
gi|13878752|sp|Q9HL09.1|RPON_THEAC RecName: Full=DNA-directed RNA polymerase subunit N
gi|10639601|emb|CAC11573.1| DNA-directed RNA polymerase, chain N related protein
[Thermoplasma acidophilum]
Length = 72
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG---------DALDALGLVRYCCRRMLMT 51
MIIPVRCF+CG+VI + + Y+ + EG D LG+ RYCCRRM+++
Sbjct: 1 MIIPVRCFSCGRVIASDYGRYIKRVNEIKAEGRDPSPEEIEKIFDDLGIERYCCRRMIVS 60
Query: 52 HVDLIEKLLNYN 63
HVDLI +++ ++
Sbjct: 61 HVDLISEIMPFS 72
>gi|424812188|ref|ZP_18237428.1| DNA-directed RNA polymerase, subunit N [Candidatus Nanosalinarum
sp. J07AB56]
gi|339756410|gb|EGQ39993.1| DNA-directed RNA polymerase, subunit N [Candidatus Nanosalinarum
sp. J07AB56]
Length = 65
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M +PVRC +CGKVIG+++D + + G+ LD LGL +YCCR + +THVD IE++
Sbjct: 1 MQVPVRCLSCGKVIGDRYDEFQERTGDGEDAGEVLDDLGLEKYCCRTVFLTHVDNIEEIG 60
Query: 61 NY 62
+
Sbjct: 61 EH 62
>gi|18312095|ref|NP_558762.1| DNA-directed RNA polymerase subunit N [Pyrobaculum aerophilum
str. IM2]
gi|21263947|sp|Q8ZYP9.1|RPON_PYRAE RecName: Full=DNA-directed RNA polymerase subunit N
gi|18159525|gb|AAL62944.1| DNA-directed RNA polymerase subunit N (rpoN) [Pyrobaculum
aerophilum str. IM2]
Length = 66
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK +G+ + + + A G LD LG+ RYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPIRCFTCGKPLGHLYAVFKRRVLAGEHPGRVLDDLGVTRYCCRRTLMAHVEWIDDVL 60
Query: 61 NYN 63
Y
Sbjct: 61 LYE 63
>gi|448400365|ref|ZP_21571357.1| DNA-directed RNA polymerase subunit N [Haloterrigena limicola JCM
13563]
gi|445667388|gb|ELZ20031.1| DNA-directed RNA polymerase subunit N [Haloterrigena limicola JCM
13563]
Length = 64
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W+ + + + D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFDERANEGDEDPEKVLDELGVDRYCCRRMLVSHKDLVDIV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|448330856|ref|ZP_21520132.1| DNA-directed RNA polymerase subunit N [Natrinema versiforme JCM
10478]
gi|445610692|gb|ELY64461.1| DNA-directed RNA polymerase subunit N [Natrinema versiforme JCM
10478]
Length = 64
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+ W+ + + + D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVAEHWEEFDERANEGDEDPEEVLDELGVERYCCRRMLVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|390939156|ref|YP_006402894.1| DNA-directed RNA polymerase, subunit N [Desulfurococcus
fermentans DSM 16532]
gi|390192263|gb|AFL67319.1| DNA-directed RNA polymerase, subunit N [Desulfurococcus
fermentans DSM 16532]
Length = 66
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCGK IG+ W+ Y+ ++ LD LG+ RYCCRRM +++ D+ +++L
Sbjct: 1 MLFPVRCFTCGKPIGHLWEEYIKRVENCENPAKVLDDLGVKRYCCRRMFLSYTDISKEIL 60
Query: 61 NYNTLD 66
+ +
Sbjct: 61 YFPKIS 66
>gi|296219088|ref|XP_002755739.1| PREDICTED: uncharacterized protein LOC100408086 [Callithrix
jacchus]
Length = 256
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 33 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
DALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 222 DALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 256
>gi|218884670|ref|YP_002429052.1| DNA-directed RNA polymerase subunit N [Desulfurococcus
kamchatkensis 1221n]
gi|218766286|gb|ACL11685.1| DNA-directed RNA polymerase subunit N [Desulfurococcus
kamchatkensis 1221n]
Length = 76
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
++ PVRCFTCGK IG+ W+ Y+ ++ LD LG+ RYCCRRM +++ D+ +++L
Sbjct: 11 LLFPVRCFTCGKPIGHLWEEYIKRVENGENPAKVLDDLGVKRYCCRRMFLSYTDISKEIL 70
Query: 61 NYNTLD 66
+ +
Sbjct: 71 YFPKIS 76
>gi|433638719|ref|YP_007284479.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Halovivax
ruber XH-70]
gi|448378230|ref|ZP_21560704.1| DNA-directed RNA polymerase subunit N [Halovivax asiaticus JCM
14624]
gi|433290523|gb|AGB16346.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Halovivax
ruber XH-70]
gi|445654212|gb|ELZ07066.1| DNA-directed RNA polymerase subunit N [Halovivax asiaticus JCM
14624]
Length = 64
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+ W+ + + + D + LD LG+ R+CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVAEHWEEFEERAREGDEDPAEVLDDLGVDRFCCRRMLVSHTDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|257388636|ref|YP_003178409.1| RNA polymerase, N/8 Kd subunit [Halomicrobium mukohataei DSM
12286]
gi|257170943|gb|ACV48702.1| RNA polymerase, N/8 Kd subunit [Halomicrobium mukohataei DSM
12286]
Length = 66
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPE--GDALDALGLVRYCCRRMLMTHVDLIE 57
M++PVRCFTCG V+ W+ + +A+ PE LD LG+ R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVAEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 58 KLLNYN 63
+ Y
Sbjct: 61 IVAPYQ 66
>gi|344211114|ref|YP_004795434.1| DNA-directed RNA polymerase subunit N [Haloarcula hispanica ATCC
33960]
gi|343782469|gb|AEM56446.1| DNA-directed RNA polymerase subunit N [Haloarcula hispanica ATCC
33960]
Length = 65
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 2 IIPVRCFTCGKVIGNKWDTY-LDLLQADYPEG--DALDALGLVRYCCRRMLMTHVDLIEK 58
++PVRCFTCG V+G W+ + +A+ PE LD LG+ R+CCRRML++H DL++
Sbjct: 1 MVPVRCFTCGNVVGEHWEEFKARTREAEEPENPEKVLDELGVERHCCRRMLVSHKDLVDI 60
Query: 59 LLNYN 63
+ Y
Sbjct: 61 VSPYQ 65
>gi|448337137|ref|ZP_21526219.1| DNA-directed RNA polymerase subunit N [Natrinema pallidum DSM
3751]
gi|445626483|gb|ELY79826.1| DNA-directed RNA polymerase subunit N [Natrinema pallidum DSM
3751]
Length = 64
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+ W+ + + + D + LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVAEHWEEFDERANEGDEDPEEVLDELGVDRYCCRRMLVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|347523603|ref|YP_004781173.1| RNA polymerase, N/8 Kd subunit [Pyrolobus fumarii 1A]
gi|343460485|gb|AEM38921.1| RNA polymerase, N/8 Kd subunit [Pyrolobus fumarii 1A]
Length = 66
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRC+TCG + W+ + +Q LD LG+ RYCCRRML+ HV LI +++
Sbjct: 1 MIIPVRCWTCGAPLAQYWEEFHKRVQNGEDPKKVLDELGIKRYCCRRMLLAHVPLIYEVI 60
Query: 61 NYNTL 65
+
Sbjct: 61 RFRRF 65
>gi|312381706|gb|EFR27392.1| hypothetical protein AND_05926 [Anopheles darlingi]
Length = 396
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 33 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
DALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 362 DALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 396
>gi|15790220|ref|NP_280044.1| DNA-directed RNA polymerase subunit N [Halobacterium sp. NRC-1]
gi|169235949|ref|YP_001689149.1| DNA-directed RNA polymerase subunit N [Halobacterium salinarum
R1]
gi|21263964|sp|Q9HQJ1.1|RPON_HALSA RecName: Full=DNA-directed RNA polymerase subunit N
gi|229564251|sp|B0R4Y6.1|RPON_HALS3 RecName: Full=DNA-directed RNA polymerase subunit N
gi|10580678|gb|AAG19524.1| DNA-directed RNA polymerase subunit N [Halobacterium sp. NRC-1]
gi|167727015|emb|CAP13801.1| DNA-directed RNA polymerase subunit N [Halobacterium salinarum
R1]
Length = 66
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY---LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIE 57
M++PVRCF+CG V+G W+ + + D D LD LG+ R+CCRRML+ H DL++
Sbjct: 1 MMVPVRCFSCGTVVGEHWEAFKARAETHDGDEDPADVLDDLGVDRHCCRRMLIAHQDLVD 60
Query: 58 KLLNYN 63
+ Y
Sbjct: 61 VVSPYQ 66
>gi|424813862|ref|ZP_18239040.1| DNA-directed RNA polymerase, subunit N [Candidatus Nanosalina sp.
J07AB43]
gi|339757478|gb|EGQ42735.1| DNA-directed RNA polymerase, subunit N [Candidatus Nanosalina sp.
J07AB43]
Length = 65
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M IPVRCF+CGKVIG+KW+ + + + + + LD LGL +YCCR + +T+VD IE++
Sbjct: 1 MQIPVRCFSCGKVIGDKWNEFEERTEEGEDKKEVLDDLGLEKYCCRTVFLTNVDTIEEVG 60
Query: 61 NYN 63
++
Sbjct: 61 EHH 63
>gi|76802063|ref|YP_327071.1| DNA-directed RNA polymerase subunit N [Natronomonas pharaonis DSM
2160]
gi|121724404|sp|Q3IQT2.1|RPON_NATPD RecName: Full=DNA-directed RNA polymerase subunit N
gi|76557928|emb|CAI49512.1| DNA-directed RNA polymerase subunit N [Natronomonas pharaonis DSM
2160]
Length = 64
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+G W + + + D + LD LG+ R CCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGTVVGEHWGEFKERAREGDEDPAEVLDELGVERACCRRMLVSHKDLVDIV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|387592254|gb|EIJ87278.1| DNA-directed RNA polymerase II [Nematocida parisii ERTm3]
gi|387597405|gb|EIJ95025.1| DNA-directed RNA polymerase II [Nematocida parisii ERTm1]
Length = 75
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCGK + ++W+ Y++ + + L LG R CCR +++T VD+++K+L
Sbjct: 1 MLIPVRCFTCGKEVSSRWEEYMERCAMSHDKAKILTDLGFKRPCCRTVMLTTVDIMQKIL 60
Query: 61 NYN 63
+
Sbjct: 61 KFE 63
>gi|355570780|ref|ZP_09042050.1| DNA-directed RNA polymerase subunit N [Methanolinea tarda NOBI-1]
gi|354826062|gb|EHF10278.1| DNA-directed RNA polymerase subunit N [Methanolinea tarda NOBI-1]
Length = 62
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI ++ + +A LD LG+VRYCCRRML+ H ++I+ L
Sbjct: 1 MIPVRCFTCGKVISPAYEEFKRRKEAGEDPKKILDDLGMVRYCCRRMLLAHKEIIDDLNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|402470308|gb|EJW04630.1| hypothetical protein EDEG_01157 [Edhazardia aedis USNM 41457]
Length = 71
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG+ I + + +L++ + + G+ LD L + +CCRRM + +V++I+KLL
Sbjct: 1 MIIPIRCFTCGREIASMYYQFLEMCKENKNVGEVLDELDMKLFCCRRMFIGNVEIIDKLL 60
Query: 61 NY-NTLDKSD 69
+ NT SD
Sbjct: 61 MFENTAKDSD 70
>gi|284165818|ref|YP_003404097.1| RNA polymerase, N/8 Kd subunit [Haloterrigena turkmenica DSM
5511]
gi|448391693|ref|ZP_21566788.1| DNA-directed RNA polymerase subunit N [Haloterrigena salina JCM
13891]
gi|284015473|gb|ADB61424.1| RNA polymerase, N/8 Kd subunit [Haloterrigena turkmenica DSM
5511]
gi|445665105|gb|ELZ17783.1| DNA-directed RNA polymerase subunit N [Haloterrigena salina JCM
13891]
Length = 64
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+ W+ + + + D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVAEHWEEFDERANEGDEDPEKVLDELGVERYCCRRMLVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|167041221|gb|ABZ05978.1| putative RNA polymerases N / 8 kDa subunit [uncultured marine
microorganism HF4000_001N02]
Length = 68
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKV+ + ++ Y + A LD LGL RYCCRRM + H+DLI+++
Sbjct: 1 MLIPVRCWSCGKVVAHLYEQYKTAVDAGEDAEKVLDDLGLERYCCRRMYVGHIDLIDEIA 60
Query: 61 NYNT 64
++
Sbjct: 61 PFSV 64
>gi|322511119|gb|ADX06432.1| putative DNA-directed RNA polymerase II Rpb10 [Organic Lake
phycodnavirus 2]
Length = 73
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 17/73 (23%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYP-----------------EGDALDALGLVRY 43
M+IPV+CFTCGKVI NK+ YL L+ EG LD LGLV
Sbjct: 1 MLIPVKCFTCGKVIANKYPVYLALVAEQKKDKDSIQYLDTEKIEKTIEGKVLDELGLVDV 60
Query: 44 CCRRMLMTHVDLI 56
CCRR ++THVD++
Sbjct: 61 CCRRHILTHVDIL 73
>gi|88604128|ref|YP_504306.1| DNA-directed RNA polymerase subunit N [Methanospirillum hungatei
JF-1]
gi|121731042|sp|Q2FTN7.1|RPON_METHJ RecName: Full=DNA-directed RNA polymerase subunit N
gi|88189590|gb|ABD42587.1| DNA-directed RNA polymerase, subunit N [Methanospirillum hungatei
JF-1]
Length = 62
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI ++ + A LD LG+ RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISTAYEEFKRRRDASEDPKRILDDLGMDRYCCRRMLLTHKEIIDELNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|397772875|ref|YP_006540421.1| RNA polymerase, N/8 Kd subunit [Natrinema sp. J7-2]
gi|448340559|ref|ZP_21529530.1| DNA-directed RNA polymerase subunit N [Natrinema gari JCM 14663]
gi|448346276|ref|ZP_21535162.1| DNA-directed RNA polymerase subunit N [Natrinema altunense JCM
12890]
gi|397681968|gb|AFO56345.1| RNA polymerase, N/8 Kd subunit [Natrinema sp. J7-2]
gi|445629992|gb|ELY83262.1| DNA-directed RNA polymerase subunit N [Natrinema gari JCM 14663]
gi|445632865|gb|ELY86071.1| DNA-directed RNA polymerase subunit N [Natrinema altunense JCM
12890]
Length = 64
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M++PVRCFTCG V+ W+ + + + D LD LG+ RYCCRRML++H DL++ +
Sbjct: 1 MMVPVRCFTCGNVVAEHWEEFDERANEGDEDPEKVLDELGVDRYCCRRMLVSHKDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>gi|395645090|ref|ZP_10432950.1| DNA-directed RNA polymerase subunit N [Methanofollis liminatans
DSM 4140]
gi|395441830|gb|EJG06587.1| DNA-directed RNA polymerase subunit N [Methanofollis liminatans
DSM 4140]
Length = 62
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRC TCGKVI W+ + +A + LD LGL RYCCRRML+TH + ++ +
Sbjct: 1 MIPVRCVTCGKVISPAWEAFKRRREAGEDPKEILDDLGLKRYCCRRMLLTHRETVDDVNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|403305715|ref|XP_003943402.1| PREDICTED: uncharacterized protein LOC101032398 [Saimiri
boliviensis boliviensis]
Length = 138
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 33 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
DALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 104 DALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 138
>gi|397466808|ref|XP_003805137.1| PREDICTED: uncharacterized protein LOC100969777 [Pan paniscus]
Length = 169
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 33 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
DALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 135 DALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 169
>gi|408403735|ref|YP_006861718.1| DNA-directed RNA polymerase, subunit N [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364331|gb|AFU58061.1| DNA-directed RNA polymerase, subunit N [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 85
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCG +I +K+ Y + ++A +D+L + RYCCRRM ++ ++ I +++
Sbjct: 8 MLIPVRCFTCGNLIADKYAEYSNRVKAGEDPAKVMDSLNIKRYCCRRMYISSIETIYQII 67
Query: 61 NY 62
Y
Sbjct: 68 PY 69
>gi|82548272|gb|ABB82963.1| DNA-directed RNA polymerase subunit N [uncultured organism
HF70_19B12]
Length = 68
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRC++CGKV+ + + Y++ A + LD L L RYCCRRM + H+DLI+ +
Sbjct: 1 MLIPVRCWSCGKVVAHLYKKYVERTAAGEDPQEVLDDLALSRYCCRRMFVGHIDLIDDIA 60
Query: 61 NYN 63
++
Sbjct: 61 PFS 63
>gi|378755335|gb|EHY65362.1| DNA-directed RNA polymerase I [Nematocida sp. 1 ERTm2]
Length = 76
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IPVRCFTCGK + W+ Y++ + L LGL R CCR +++T VD+++K+L
Sbjct: 1 MLIPVRCFTCGKEVSGMWEEYMERCTTSNDKAKILTELGLKRPCCRTVMLTTVDIMQKIL 60
Query: 61 NYN 63
+
Sbjct: 61 KFE 63
>gi|284161252|ref|YP_003399875.1| RNA polymerase, N/8 Kd subunit [Archaeoglobus profundus DSM 5631]
gi|284011249|gb|ADB57202.1| RNA polymerase, N/8 Kd subunit [Archaeoglobus profundus DSM 5631]
Length = 70
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 3 IPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 62
P+RCF+CG VIG+ + Y L+ +ALD +G+ RYCCRRM +T+ ++E++ +
Sbjct: 6 FPIRCFSCGAVIGHLYAEYKKKLEEGKSPKEALDEMGIERYCCRRMFLTYKSVLEEIAKF 65
Query: 63 N 63
+
Sbjct: 66 H 66
>gi|374628601|ref|ZP_09700986.1| DNA-directed RNA polymerase, subunit N [Methanoplanus limicola
DSM 2279]
gi|373906714|gb|EHQ34818.1| DNA-directed RNA polymerase, subunit N [Methanoplanus limicola
DSM 2279]
Length = 62
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCG+V+ ++ + A D LD LGL RYCCRRML+TH ++I+ L
Sbjct: 1 MIPVRCFTCGRVVSVYYEEFKKRRDAGEEIRDILDDLGLERYCCRRMLLTHKEIIDDLNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|257076118|ref|ZP_05570479.1| DNA-directed RNA polymerase subunit N [Ferroplasma acidarmanus
fer1]
Length = 73
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 10/73 (13%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ------ADYPEG----DALDALGLVRYCCRRMLM 50
MIIPVRCF+CGKVIG+ + +++ + P G + LD LG+ RYCCRRM++
Sbjct: 1 MIIPVRCFSCGKVIGSDYVRFVEESKKIRKDTGHDPTGKEKSEILDNLGVDRYCCRRMIL 60
Query: 51 THVDLIEKLLNYN 63
++ DL++++++Y+
Sbjct: 61 SNADLLDEVISYS 73
>gi|440906571|gb|ELR56819.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Bos
grunniens mutus]
Length = 53
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 32/37 (86%)
Query: 31 EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
+ DALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 17 QTDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 53
>gi|432329924|ref|YP_007248067.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Methanoregula formicicum SMSP]
gi|432136633|gb|AGB01560.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Methanoregula formicicum SMSP]
Length = 62
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGK I W+ + + LD L + RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKPISTAWEEFRVRKEKGEDPKKILDDLNISRYCCRRMLLTHKEIIDELNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>gi|717189|emb|CAA87657.1| RNA polymerase II subunit [Homo sapiens]
gi|717191|emb|CAA87658.1| RNA polymerase II subunit [Homo sapiens]
Length = 32
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 29/32 (90%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEG 32
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EG
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEG 32
>gi|282164314|ref|YP_003356699.1| DNA-directed RNA polymerase subunit N [Methanocella paludicola
SANAE]
gi|282156628|dbj|BAI61716.1| DNA-directed RNA polymerase subunit N [Methanocella paludicola
SANAE]
Length = 71
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLL---QADYPEG------DALDALGLVRYCCRRMLMTH 52
+IPVRCFTCG V+ N W+ Y + + + P+G D LD LG+ RYCCRRML++H
Sbjct: 1 MIPVRCFTCGMVVSNVWEEYRERVEERKKSLPKGEQLKVGDILDDLGVERYCCRRMLLSH 60
Query: 53 VDLIEKLLNYN 63
V+L++ L Y
Sbjct: 61 VELVDVLAPYQ 71
>gi|48477397|ref|YP_023103.1| DNA-directed RNA polymerase subunit N [Picrophilus torridus DSM
9790]
gi|73917892|sp|Q6L292.1|RPON_PICTO RecName: Full=DNA-directed RNA polymerase subunit N
gi|48430045|gb|AAT42910.1| DNA-directed RNA polymerase subunit N [Picrophilus torridus DSM
9790]
Length = 72
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 10/72 (13%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ------ADYPEGDA----LDALGLVRYCCRRMLM 50
MIIPVRCF+CG+VI + + + + P G+ LD LG+ RYCCRRM++
Sbjct: 1 MIIPVRCFSCGRVIASDYVRFTEACTKIINETGREPRGEEKAKILDDLGVKRYCCRRMIL 60
Query: 51 THVDLIEKLLNY 62
+H DLI+++L Y
Sbjct: 61 SHKDLIDEVLPY 72
>gi|352682843|ref|YP_004893367.1| DNA-directed RNA polymerase subunit N [Thermoproteus tenax Kra 1]
gi|350275642|emb|CCC82289.1| DNA-directed RNA polymerase subunit N [Thermoproteus tenax Kra 1]
Length = 65
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ P+RCFTCG+ +G+ W+ + A LD LG+ RYCCRR L+ HVD I+ +L
Sbjct: 1 MMAPLRCFTCGRPLGHLWEPLRRRVLAGEDPARVLDDLGVDRYCCRRTLLAHVDWIDDVL 60
Query: 61 NYNT 64
+ +
Sbjct: 61 QFES 64
>gi|322369530|ref|ZP_08044095.1| DNA-directed RNA polymerase subunit N [Haladaptatus
paucihalophilus DX253]
gi|320551262|gb|EFW92911.1| DNA-directed RNA polymerase subunit N [Haladaptatus
paucihalophilus DX253]
Length = 65
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 2 IIPVRCFTCGKVIGNKWDTY---LDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEK 58
+IPVRCFTCG V+ W Y + + G LD LG+ R+CCRRML+ H DL++
Sbjct: 1 MIPVRCFTCGNVVSEHWQEYKARAETQMGNEDPGKVLDDLGVERHCCRRMLVAHKDLVDI 60
Query: 59 LLNYN 63
+ Y
Sbjct: 61 VAPYQ 65
>gi|402892393|ref|XP_003909400.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5, partial [Papio anubis]
gi|281348997|gb|EFB24581.1| hypothetical protein PANDA_021438 [Ailuropoda melanoleuca]
Length = 35
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 31/35 (88%)
Query: 33 DALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
DALDALGL RYCCRRML+ HVDLIEKLLNY L+K
Sbjct: 1 DALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 35
>gi|156936982|ref|YP_001434778.1| DNA-directed RNA polymerase subunit N [Ignicoccus hospitalis
KIN4/I]
gi|156565966|gb|ABU81371.1| DNA-directed RNA polymerase, subunit N [Ignicoccus hospitalis
KIN4/I]
Length = 68
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 45/63 (71%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
++P+RC+TCG+ + +++ +L ++A G LD LG+ RYCCRR +++ VD+ ++++
Sbjct: 1 MLPIRCYTCGRPLWPEYEEFLRRVEAGEEPGKVLDDLGIKRYCCRRTMLSAVDISKEIIK 60
Query: 62 YNT 64
++T
Sbjct: 61 FST 63
>gi|148643492|ref|YP_001274005.1| DNA-directed RNA polymerase subunit N [Methanobrevibacter smithii
ATCC 35061]
gi|222445009|ref|ZP_03607524.1| hypothetical protein METSMIALI_00625 [Methanobrevibacter smithii
DSM 2375]
gi|261350421|ref|ZP_05975838.1| conserved domain protein [Methanobrevibacter smithii DSM 2374]
gi|148552509|gb|ABQ87637.1| DNA-directed RNA polymerase, subunit N, RpoN [Methanobrevibacter
smithii ATCC 35061]
gi|222434574|gb|EEE41739.1| DNA-directed RNA polymerase subunit N [Methanobrevibacter smithii
DSM 2375]
gi|288861204|gb|EFC93502.1| conserved domain protein [Methanobrevibacter smithii DSM 2374]
Length = 56
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIE 57
+IP+RC +CGK + +D Y L A D LD LGL RYCCRRML++HV+ E
Sbjct: 1 MIPIRCLSCGKPVSAYFDEYNKRLAAGEKSKDILDDLGLNRYCCRRMLISHVETWE 56
>gi|124027419|ref|YP_001012739.1| DNA-directed RNA polymerase subunit N [Hyperthermus butylicus DSM
5456]
gi|158513942|sp|A2BK83.1|RPON_HYPBU RecName: Full=DNA-directed RNA polymerase subunit N
gi|123978113|gb|ABM80394.1| DNA-directed RNA polymerase subunit N [Hyperthermus butylicus DSM
5456]
Length = 66
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG+ + W+ + ++ LD LG+ RYCCR+ L+ HV I ++
Sbjct: 1 MIIPMRCFTCGRPLAQYWEEFRSRVEGGEDPRKVLDELGVKRYCCRKTLLAHVPAIYEVR 60
Query: 61 NYNTL 65
+ +
Sbjct: 61 KFKRV 65
>gi|84489664|ref|YP_447896.1| DNA-directed RNA polymerase subunit N [Methanosphaera stadtmanae
DSM 3091]
gi|84372983|gb|ABC57253.1| RpoN [Methanosphaera stadtmanae DSM 3091]
Length = 55
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 5 VRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDL 55
VRCFTCGKVI +D + +A D LD LG+ +YCCRRM ++HVD+
Sbjct: 4 VRCFTCGKVISASFDEFEKRTKAGENPNDVLDDLGITKYCCRRMFISHVDV 54
>gi|429216774|ref|YP_007174764.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Caldisphaera
lagunensis DSM 15908]
gi|429133303|gb|AFZ70315.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Caldisphaera
lagunensis DSM 15908]
Length = 79
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRC TCG +G+ ++ + + ++A LD LG+ RYCCRR L T V IE++
Sbjct: 1 MLPPVRCLTCGAPLGHLYEPFKNRVEAGEDPEKVLDDLGVKRYCCRRTLYTSVAYIEQIS 60
Query: 61 NYNT 64
Y+T
Sbjct: 61 KYST 64
>gi|431910524|gb|ELK13595.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Pteropus alecto]
Length = 115
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPV CF G +KW+ L LL +Y GDAL LGL Y M + H LI+ LL
Sbjct: 26 MIIPVCCFIFGTFFSDKWEASLGLLHTEYTRGDALHILGLKYYYSYCMALAHRGLIKNLL 85
Query: 61 NYNTLDKSDTS 71
NY +SD +
Sbjct: 86 NYGP-QRSDPA 95
>gi|432328920|ref|YP_007247064.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Aciduliprofundum sp. MAR08-339]
gi|432135629|gb|AGB04898.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Aciduliprofundum sp. MAR08-339]
Length = 76
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 10/73 (13%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL--------QADYPE--GDALDALGLVRYCCRRMLM 50
+IIPVRCF+CG+VI + + +++ + + PE D +G+ RYCCRRM++
Sbjct: 4 VIIPVRCFSCGRVIASDYIAFVNKVNLIRETENREPTPEEIQKIFDEIGVRRYCCRRMIL 63
Query: 51 THVDLIEKLLNYN 63
+HVDLI+ + ++
Sbjct: 64 SHVDLIDDTMAFD 76
>gi|254167078|ref|ZP_04873931.1| RNA polymerases N / 8 kDa subunit superfamily [Aciduliprofundum
boonei T469]
gi|254167768|ref|ZP_04874618.1| RNA polymerases N / 8 kDa subunit superfamily [Aciduliprofundum
boonei T469]
gi|197623296|gb|EDY35861.1| RNA polymerases N / 8 kDa subunit superfamily [Aciduliprofundum
boonei T469]
gi|197623934|gb|EDY36496.1| RNA polymerases N / 8 kDa subunit superfamily [Aciduliprofundum
boonei T469]
Length = 73
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 10/73 (13%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL--------QADYPE--GDALDALGLVRYCCRRMLM 50
MIIPVRCF+CG+VI + + +++ + + PE D +G+ RYCCRRM++
Sbjct: 1 MIIPVRCFSCGRVIASDYIAFVNKVNLIRETENREPTPEEIQRIFDEIGVKRYCCRRMIL 60
Query: 51 THVDLIEKLLNYN 63
+HV+LI+ + ++
Sbjct: 61 SHVNLIDDTMAFD 73
>gi|312137113|ref|YP_004004450.1| DNA-directed RNA polymerase, subunit n [Methanothermus fervidus
DSM 2088]
gi|311224832|gb|ADP77688.1| DNA-directed RNA polymerase, subunit N [Methanothermus fervidus
DSM 2088]
Length = 56
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLI 56
MIIPVRCFTCG I +D + ++ L+ L + RYCCRRML++H+D++
Sbjct: 1 MIIPVRCFTCGNPISKYYDEFQKRVKKGEKIEKILNDLNIKRYCCRRMLISHIDIL 56
>gi|312066008|ref|XP_003136065.1| hypothetical protein LOAG_00477 [Loa loa]
gi|307768767|gb|EFO28001.1| hypothetical protein LOAG_00477 [Loa loa]
Length = 74
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 31 EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
GDALDAL L RYCCRRML++HVDLI KLL+Y+ L+K
Sbjct: 38 SGDALDALNLRRYCCRRMLLSHVDLIVKLLDYHPLEK 74
>gi|333910742|ref|YP_004484475.1| DNA-directed RNA polymerase subunit N [Methanotorris igneus Kol
5]
gi|333751331|gb|AEF96410.1| DNA-directed RNA polymerase subunit N [Methanotorris igneus Kol
5]
Length = 74
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH------V 53
+I PVRCF+CG VI ++ Y+ +L + P+ D LD LG+ +YCCRRM ++H
Sbjct: 3 VIFPVRCFSCGNVIAEVYEEYVQRILNGESPK-DVLDDLGIKKYCCRRMFISHRIDEKGR 61
Query: 54 DLIEKLLNYNTL 65
+LI+ ++ ++ L
Sbjct: 62 ELIDDIMEHDNL 73
>gi|288560169|ref|YP_003423655.1| DNA-directed RNA polymerase subunit N RpoN [Methanobrevibacter
ruminantium M1]
gi|288542879|gb|ADC46763.1| DNA-directed RNA polymerase subunit N RpoN [Methanobrevibacter
ruminantium M1]
Length = 56
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIE 57
+IP+RC +CGK + +D Y L D LD +G+ RYCCRRML++HV+ E
Sbjct: 1 MIPIRCISCGKPVSAYFDEYNSRLADGEKSKDILDDMGITRYCCRRMLISHVETWE 56
>gi|289597149|ref|YP_003483845.1| RNA polymerase, N/8 Kd subunit [Aciduliprofundum boonei T469]
gi|289534936|gb|ADD09283.1| RNA polymerase, N/8 Kd subunit [Aciduliprofundum boonei T469]
Length = 76
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 10/73 (13%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL--------QADYPE--GDALDALGLVRYCCRRMLM 50
+IIPVRCF+CG+VI + + +++ + + PE D +G+ RYCCRRM++
Sbjct: 4 LIIPVRCFSCGRVIASDYIAFVNKVNLIRETENREPTPEEIQRIFDEIGVKRYCCRRMIL 63
Query: 51 THVDLIEKLLNYN 63
+HV+LI+ + ++
Sbjct: 64 SHVNLIDDTMAFD 76
>gi|150401517|ref|YP_001325283.1| DNA-directed RNA polymerase subunit N [Methanococcus aeolicus
Nankai-3]
gi|150014220|gb|ABR56671.1| RNA polymerase, N/8 Kd subunits [Methanococcus aeolicus Nankai-3]
Length = 69
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
++ P+RCF+CG VI + Y+ L+ +ALD LG+ +YCCRRM ++H
Sbjct: 2 VMFPIRCFSCGGVISEVYGEYVSKLKEGADLSNALDELGIKKYCCRRMFISH 53
>gi|374635691|ref|ZP_09707285.1| RNA polymerase, N/8 Kd subunit [Methanotorris formicicus Mc-S-70]
gi|373561544|gb|EHP87777.1| RNA polymerase, N/8 Kd subunit [Methanotorris formicicus Mc-S-70]
Length = 74
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH 52
+I PVRCF+CG VI ++ Y+ +L + P+ D LD LG+ +YCCRRM ++H
Sbjct: 3 VIFPVRCFSCGNVISEVYEEYVKRILNGENPK-DILDDLGIRKYCCRRMFISH 54
>gi|281337884|gb|EFB13468.1| hypothetical protein PANDA_009690 [Ailuropoda melanoleuca]
Length = 62
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 PVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN 63
P CFTCGK+ GNK + Y + Y EG ALDALG C ML+ H DL EKLL
Sbjct: 1 PTCCFTCGKIAGNKQEAYPGCCR-PYTEGAALDALGRKYNCRGGMLLAHTDLFEKLLECA 59
Query: 64 TLD 66
L+
Sbjct: 60 RLE 62
>gi|150399388|ref|YP_001323155.1| DNA-directed RNA polymerase subunit N [Methanococcus vannielii
SB]
gi|166229334|sp|A6UPX1.1|RPON_METVS RecName: Full=DNA-directed RNA polymerase subunit N
gi|150012091|gb|ABR54543.1| RNA polymerase, N/8 Kd subunits [Methanococcus vannielii SB]
Length = 68
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
MI P+RCF+CG VI +D Y L + L+ LG+ +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGNVISEVYDEYKTRLSNVESPEEILNDLGVTKYCCRRMFASH 52
>gi|336121975|ref|YP_004576750.1| DNA-directed RNA polymerase subunit N [Methanothermococcus
okinawensis IH1]
gi|334856496|gb|AEH06972.1| DNA-directed RNA polymerase subunit N [Methanothermococcus
okinawensis IH1]
Length = 69
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
++ P+RCF+CG VI ++ Y+ L+ + LD LG+ +YCCRRM ++H
Sbjct: 2 VMFPIRCFSCGNVISEVYEEYISRLKNGEKPDEILDDLGIKKYCCRRMFISH 53
>gi|41615126|ref|NP_963624.1| DNA-directed RNA polymerase subunit N [Nanoarchaeum equitans
Kin4-M]
gi|73917891|sp|Q74MB5.1|RPON_NANEQ RecName: Full=DNA-directed RNA polymerase subunit N
gi|40068850|gb|AAR39185.1| NEQ338 [Nanoarchaeum equitans Kin4-M]
Length = 65
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ P+RCF+CGK +G+ W+ + + + LD LGL RYCCRR L++ V + +
Sbjct: 1 MLPPIRCFSCGKPLGHLWEEFNERVNKGEDPKKVLDDLGLERYCCRRTLLSAVVVFPVIA 60
Query: 61 NYNTL 65
+ +
Sbjct: 61 KFKKV 65
>gi|333987641|ref|YP_004520248.1| RNA polymerase, N/8 Kd subunit [Methanobacterium sp. SWAN-1]
gi|333825785|gb|AEG18447.1| RNA polymerase, N/8 Kd subunit [Methanobacterium sp. SWAN-1]
Length = 55
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDL 55
+IPVRC +CGKV+ ++ Y LD LG+ RYCCRRM +THV++
Sbjct: 1 MIPVRCLSCGKVVSAYFEEYQQRTADGEDPKKVLDDLGITRYCCRRMFITHVEV 54
>gi|304314291|ref|YP_003849438.1| DNA-directed RNA polymerase subunit N [Methanothermobacter
marburgensis str. Marburg]
gi|302587750|gb|ADL58125.1| DNA-directed RNA polymerase subunit N [Methanothermobacter
marburgensis str. Marburg]
Length = 55
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVD 54
+IPVRC +CGK + ++ Y + D LD LGL RYCCRRML++HV+
Sbjct: 1 MIPVRCLSCGKPVSAYFNEYQKRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>gi|325958569|ref|YP_004290035.1| RNA polymerase, N/8 Kd subunit [Methanobacterium sp. AL-21]
gi|325330001|gb|ADZ09063.1| RNA polymerase, N/8 Kd subunit [Methanobacterium sp. AL-21]
Length = 55
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDL 55
+IPVRC +CGKV+ +D Y LD LG+ +YCCRRML+ HV++
Sbjct: 1 MIPVRCISCGKVVSAYFDEYQKRTAEGEDPKKVLDDLGVTKYCCRRMLIAHVEV 54
>gi|410721680|ref|ZP_11361010.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Methanobacterium sp. Maddingley MBC34]
gi|410598426|gb|EKQ52999.1| DNA-directed RNA polymerase, subunit N (RpoN/RPB10)
[Methanobacterium sp. Maddingley MBC34]
Length = 55
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDL 55
+IPVRC +CGKVI ++ + + D LD LG+ +YCCRRM + HV++
Sbjct: 1 MIPVRCLSCGKVISAYFEDFQKRTEMGENPKDVLDDLGITKYCCRRMFIAHVEV 54
>gi|15678070|ref|NP_275184.1| DNA-directed RNA polymerase subunit N [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6647762|sp|O26147.1|RPON_METTH RecName: Full=DNA-directed RNA polymerase subunit N; AltName:
Full=RPB10
gi|2621076|gb|AAB84548.1| DNA-dependent RNA polymerase, subunit N [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 55
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVD 54
+IPVRC +CGK + ++ Y + D LD LGL RYCCRRML++HV+
Sbjct: 1 MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>gi|2127874|pir||E64324 DNA-directed RNA polymerase (EC 2.7.7.6) subunit N -
Methanococcus jannaschii
Length = 76
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH 52
M+ P+RCF+CG VI ++ Y + +L+ + P+ D LD LG+ +YCCRRM +++
Sbjct: 4 MMFPIRCFSCGNVIAEVFEEYKERILKGENPK-DVLDDLGIKKYCCRRMFISY 55
>gi|15668368|ref|NP_247164.1| DNA-directed RNA polymerase subunit N [Methanocaldococcus
jannaschii DSM 2661]
gi|3915859|sp|Q57649.2|RPON_METJA RecName: Full=DNA-directed RNA polymerase subunit N
gi|2826261|gb|AAB98176.1| DNA-directed RNA polymerase, subunit N (rpoN) [Methanocaldococcus
jannaschii DSM 2661]
Length = 73
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH 52
M+ P+RCF+CG VI ++ Y + +L+ + P+ D LD LG+ +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERILKGENPK-DVLDDLGIKKYCCRRMFISY 52
>gi|9257102|pdb|1EF4|A Chain A, Solution Structure Of The Essential Rna Polymerase
Subunit Rpb10 From Methanobacterium Thermoautotrophicum
Length = 55
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 3 IPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVD 54
IPVRC +CGK + ++ Y + D LD LGL RYCCRRML++HV+
Sbjct: 2 IPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVE 53
>gi|242022496|ref|XP_002431676.1| ATP-dependent DNA helicase MER3, putative [Pediculus humanus
corporis]
gi|212516984|gb|EEB18938.1| ATP-dependent DNA helicase MER3, putative [Pediculus humanus
corporis]
Length = 1018
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 6 RCFTCGKVIGNKWDTYLDLLQADYPEG 32
+CFTCGKVIGNKW+ YL LLQA+Y EG
Sbjct: 992 KCFTCGKVIGNKWEAYLGLLQAEYTEG 1018
>gi|296109376|ref|YP_003616325.1| RNA polymerase, N/8 Kd subunit [methanocaldococcus infernus ME]
gi|295434190|gb|ADG13361.1| RNA polymerase, N/8 Kd subunit [Methanocaldococcus infernus ME]
Length = 73
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
M+ P+RCF+CG VI ++ Y + + G LD LG+ +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERVLKGEDPGKVLDDLGIKKYCCRRMFISY 52
>gi|440894989|gb|ELR47299.1| hypothetical protein M91_16104 [Bos grunniens mutus]
Length = 54
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPV CFTC K++GNKW+ L LLQA Y + ++ V L +KLL
Sbjct: 1 MIIPVHCFTCSKIVGNKWEACLGLLQAKYTQRIP-------------WMLAQVGLTKKLL 47
Query: 61 NYNTLDK 67
NY L +
Sbjct: 48 NYAPLGE 54
>gi|408381884|ref|ZP_11179431.1| DNA-directed RNA polymerase subunit N [Methanobacterium
formicicum DSM 3637]
gi|407815332|gb|EKF85917.1| DNA-directed RNA polymerase subunit N [Methanobacterium
formicicum DSM 3637]
Length = 55
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDL 55
+IPVRC +CGKVI ++ + + + LD LG+ +YCCRRM + HV++
Sbjct: 1 MIPVRCLSCGKVISAYFEDFQKRTEMGEDPKEVLDDLGITKYCCRRMFIAHVEV 54
>gi|172468|gb|AAA34995.1| RNA polymerase II subunit RPB10 [Saccharomyces cerevisiae]
Length = 46
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 27/28 (96%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD 28
MI+PVRCF+CGKV+G+KW++YL+LLQ D
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQED 28
>gi|156054014|ref|XP_001592933.1| hypothetical protein SS1G_05855 [Sclerotinia sclerotiorum 1980]
gi|154703635|gb|EDO03374.1| hypothetical protein SS1G_05855 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 200
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 35 LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 67
+D L L RYCCRRM+MTHVDLIEKLL YN ++
Sbjct: 1 MDELTLKRYCCRRMIMTHVDLIEKLLRYNPAER 33
>gi|256810439|ref|YP_003127808.1| DNA-directed RNA polymerase subunit N [Methanocaldococcus fervens
AG86]
gi|256793639|gb|ACV24308.1| RNA polymerase, N/8 Kd subunit [Methanocaldococcus fervens AG86]
Length = 72
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH 52
+ P+RCF+CG VI ++ Y + +L+ + P+ D LD LG+ +YCCRRM +++
Sbjct: 1 MFPIRCFSCGNVIAEVFEEYKERVLKGENPK-DVLDDLGIKKYCCRRMFISY 51
>gi|297618749|ref|YP_003706854.1| RNA polymerase, N/8 Kd subunit [Methanococcus voltae A3]
gi|297377726|gb|ADI35881.1| RNA polymerase, N/8 Kd subunit [Methanococcus voltae A3]
Length = 68
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH-----VDL 55
M+ PVRCF+CG V+ + Y + L + LD L + +YCCRRM +H DL
Sbjct: 1 MMFPVRCFSCGTVVSEVYGEYHERLTNGEKSDEILDDLDITKYCCRRMFASHRLHNDKDL 60
Query: 56 IEKLLNYN 63
+ ++ Y
Sbjct: 61 FDDVMEYK 68
>gi|289191576|ref|YP_003457517.1| RNA polymerase, N/8 Kd subunit [Methanocaldococcus sp. FS406-22]
gi|288938026|gb|ADC68781.1| RNA polymerase, N/8 Kd subunit [Methanocaldococcus sp. FS406-22]
Length = 72
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH 52
+ P+RCF+CG VI ++ Y + +L+ + P+ D LD LG+ +YCCRRM +++
Sbjct: 1 MFPIRCFSCGNVIAEVFEEYKERILKGENPK-DVLDDLGIKKYCCRRMFISY 51
>gi|269986748|gb|EEZ93028.1| RNA polymerase, N/8 Kd subunit [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 63
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IP+RC++CGK + W+ Y + P+ + LD LG+ RYCCR + + VD + ++N
Sbjct: 1 MIPMRCYSCGKPLSQYWEKYKAEIAEKSPK-EVLDELGIKRYCCRAVFLGTVDE-DNIIN 58
Query: 62 YNTLD 66
++ ++
Sbjct: 59 FSNME 63
>gi|159905730|ref|YP_001549392.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
C6]
gi|238686974|sp|A9A9Y7.1|RPON_METM6 RecName: Full=DNA-directed RNA polymerase subunit N
gi|159887223|gb|ABX02160.1| RNA polymerase, N/8 Kd subunit [Methanococcus maripaludis C6]
Length = 68
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
MI P+RCF+CG VI ++ Y + L+ + L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGAVISEVYEEYRNRLKDGENPEEILNDLEVKKYCCRRMFASH 52
>gi|45358889|ref|NP_988446.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
S2]
gi|73917890|sp|Q6LXM4.1|RPON_METMP RecName: Full=DNA-directed RNA polymerase subunit N
gi|45047755|emb|CAF30882.1| DNA-directed RNA polymerase, subunit N [Methanococcus maripaludis
S2]
Length = 68
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
MI P+RCF+CG VI ++ Y L+ + L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGNVISEVYEEYRTRLKNGENPEEILNDLEIKKYCCRRMFASH 52
>gi|340624637|ref|YP_004743090.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
X1]
gi|339904905|gb|AEK20347.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
X1]
Length = 68
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
MI P+RCF+CG VI ++ Y L+ + L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGNVISEVYEEYRTRLKDGENPEEILNDLEIKKYCCRRMFASH 52
>gi|134045312|ref|YP_001096798.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
C5]
gi|166229332|sp|A4FWK8.1|RPON_METM5 RecName: Full=DNA-directed RNA polymerase subunit N
gi|132662937|gb|ABO34583.1| DNA-directed RNA polymerase, subunit N [Methanococcus maripaludis
C5]
Length = 68
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
MI P+RCF+CG VI ++ Y L+ + L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGAVISEVYEEYRTRLKNGENPEEILNDLEVKKYCCRRMFASH 52
>gi|261403741|ref|YP_003247965.1| DNA-directed RNA polymerase subunit N [Methanocaldococcus
vulcanius M7]
gi|261370734|gb|ACX73483.1| RNA polymerase, N/8 Kd subunit [Methanocaldococcus vulcanius M7]
Length = 73
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLD-LLQADYPEGDALDALGLVRYCCRRMLMTH 52
M+ P+RCF+CG VI ++ Y + +L+ + P+ LD LG+ +YCCRRM +++
Sbjct: 1 MMFPIRCFSCGNVIAEVFEEYKERVLKGEDPK-KVLDDLGIKKYCCRRMFVSY 52
>gi|150402496|ref|YP_001329790.1| DNA-directed RNA polymerase subunit N [Methanococcus maripaludis
C7]
gi|166229333|sp|A6VGR3.1|RPON_METM7 RecName: Full=DNA-directed RNA polymerase subunit N
gi|150033526|gb|ABR65639.1| RNA polymerase, N/8 Kd subunits [Methanococcus maripaludis C7]
Length = 68
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTH 52
MI P+RCF+CG VI ++ Y L+ + L+ L + +YCCRRM +H
Sbjct: 1 MIFPIRCFSCGAVISEVYEEYRTRLKDGENPEEILNDLEVKKYCCRRMFASH 52
>gi|302348802|ref|YP_003816440.1| DNA-directed RNA polymerase subunit N [Acidilobus saccharovorans
345-15]
gi|302329214|gb|ADL19409.1| DNA-directed RNA polymerase subunit N [Acidilobus saccharovorans
345-15]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 8 FTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 65
TCG +G+ W+ + ++A LD LG+ RYCCRR L T V IE++ +Y+ +
Sbjct: 1 MTCGAPLGHLWEEFRRRVEAGEDPSKVLDDLGVYRYCCRRTLYTSVVYIEQVASYSAV 58
>gi|290559884|gb|EFD93207.1| RNA polymerase, N/8 Kd subunit [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 63
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IP+RC++CGK + W+ + P + LD LG+ RYCCR + + +D E ++N
Sbjct: 1 MIPMRCYSCGKPLSQYWEK-YKEEIKEKPIKEVLDNLGIKRYCCRAIFLGTIDE-ENIIN 58
Query: 62 YNTLD 66
++ D
Sbjct: 59 FSNQD 63
>gi|303315435|ref|XP_003067725.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240107395|gb|EER25580.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 36
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL 25
MIIPVRCF+CGKVIG+ W+ YL LL
Sbjct: 1 MIIPVRCFSCGKVIGDLWERYLRLL 25
>gi|6554186|gb|AAF16632.1|AC011661_10 T23J18.14 [Arabidopsis thaliana]
Length = 428
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 13 VIGNKWDTYLDLLQADYPEGDALDALGL----VRYCC 45
VIGNKWD YLDLLQ DY EG L L YCC
Sbjct: 388 VIGNKWDQYLDLLQLDYTEGVKLMLCSLYVIGTDYCC 424
>gi|356927688|gb|AET42478.1| hypothetical protein EXVG_00372 [Emiliania huxleyi virus 202]
Length = 85
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLM 50
M+ P+RC TC +++ K+ + + L+ + P+ +AL +G YCCRRM +
Sbjct: 1 MLPPIRCCTCNELV--KFREFDEQLRNNVPQAEALSNIGANLYCCRRMYL 48
>gi|410670085|ref|YP_006922456.1| DNA-directed RNA polymerase subunit N [Methanolobus psychrophilus
R15]
gi|409169213|gb|AFV23088.1| DNA-directed RNA polymerase subunit N [Methanolobus psychrophilus
R15]
Length = 39
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 35 LDALGLVRYCCRRMLMTHVDLIEKLLNYN 63
LD+LG+ RYCCRRM+++HV+L++ L Y
Sbjct: 11 LDSLGVTRYCCRRMILSHVELVDVLAPYQ 39
>gi|73852636|ref|YP_293920.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
gi|72415352|emb|CAI65589.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 86]
gi|283481379|emb|CAZ69495.1| putative DNA-directed RNA polymerase subunit [Emiliania huxleyi
virus 99B1]
gi|347481618|gb|AEO97604.1| hypothetical protein ENVG_00400 [Emiliania huxleyi virus 84]
gi|347482089|gb|AEO98030.1| hypothetical protein ELVG_00457 [Emiliania huxleyi virus 203]
gi|347600701|gb|AEP15188.1| hypothetical protein EOVG_00251 [Emiliania huxleyi virus 88]
gi|347601345|gb|AEP15831.1| hypothetical protein EQVG_00422 [Emiliania huxleyi virus 207]
gi|347601738|gb|AEP16223.1| hypothetical protein ERVG_00348 [Emiliania huxleyi virus 208]
gi|357973036|gb|AET98309.1| hypothetical protein EPVG_00422 [Emiliania huxleyi virus 201]
Length = 86
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLM 50
M+ P+RC TC +I K+ Y + L+ + DAL +G+ YCCRRM +
Sbjct: 1 MLPPIRCCTCNDLI--KFREYDEQLRNKSSQSDALSNIGVKMYCCRRMYL 48
>gi|406865493|gb|EKD18535.1| DNA-directed RNA polymerase N/8 kDa subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 52
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 23/67 (34%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPV +G+ W+ YL L+ +G M+MTHVDLIEKLL
Sbjct: 1 MIIPV--------VGDLWERYLKLIDQQVQDG---------------MIMTHVDLIEKLL 37
Query: 61 NYNTLDK 67
YN D+
Sbjct: 38 KYNPADR 44
>gi|424865185|ref|ZP_18289060.1| DNA-directed RNA polymerase subunit N [SAR86 cluster bacterium
SAR86B]
gi|400758955|gb|EJP73152.1| DNA-directed RNA polymerase subunit N [SAR86 cluster bacterium
SAR86B]
Length = 46
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 30 PEGDALDALGLVRYCCRRMLMTHVDLI 56
PEG+ LD L L R CCRR +++HVD+I
Sbjct: 20 PEGEVLDELKLKRMCCRRHMLSHVDII 46
>gi|81024248|gb|ABB54882.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
yunnanensis]
gi|81024350|gb|ABB54883.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
yunnanensis]
gi|81024515|gb|ABB54884.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
yunnanensis]
gi|81024588|gb|ABB54885.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
yunnanensis]
gi|81024623|gb|ABB54886.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
yunnanensis]
gi|81025358|gb|ABB54897.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
armandii]
gi|81029803|gb|ABB55003.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81029833|gb|ABB55004.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81029865|gb|ABB55005.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81029923|gb|ABB55006.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81029956|gb|ABB55007.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81029987|gb|ABB55008.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030014|gb|ABB55009.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030044|gb|ABB55010.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030077|gb|ABB55011.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030110|gb|ABB55012.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030167|gb|ABB55013.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030204|gb|ABB55014.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030308|gb|ABB55015.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81030486|gb|ABB55016.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
densata]
gi|81034555|gb|ABB55120.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81034648|gb|ABB55121.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81034792|gb|ABB55122.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81034850|gb|ABB55123.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81034891|gb|ABB55124.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81034984|gb|ABB55125.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81035042|gb|ABB55126.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81035101|gb|ABB55127.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
gi|81035125|gb|ABB55128.1| putative DNA-directed RNA polymerase II subunit RPB10 [Pinus
tabuliformis]
Length = 21
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 51 THVDLIEKLLNYNTLDKSDTS 71
THVDLIEKLLNYNTL++S+TS
Sbjct: 1 THVDLIEKLLNYNTLERSETS 21
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.143 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,168,578,032
Number of Sequences: 23463169
Number of extensions: 37947721
Number of successful extensions: 108767
Number of sequences better than 100.0: 493
Number of HSP's better than 100.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 108133
Number of HSP's gapped (non-prelim): 496
length of query: 71
length of database: 8,064,228,071
effective HSP length: 43
effective length of query: 28
effective length of database: 7,055,311,804
effective search space: 197548730512
effective search space used: 197548730512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)