BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035172
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYA6|RPAB5_ARATH DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Arabidopsis thaliana GN=At1g61700 PE=3 SV=1
Length = 71
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/71 (90%), Positives = 69/71 (97%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNT++KSD +
Sbjct: 61 NYNTMEKSDPN 71
>sp|Q39290|RPAB5_BRANA DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Brassica napus PE=3 SV=1
Length = 71
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/71 (91%), Positives = 66/71 (92%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YLDLLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 61 NYNTLDKSDTS 71
NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71
>sp|Q9VC49|RPAB5_DROME DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1
Length = 67
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>sp|P62876|RPAB5_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Mus
musculus GN=Polr2l PE=2 SV=1
Length = 67
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>sp|P62875|RPAB5_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Homo sapiens GN=POLR2L PE=1 SV=1
Length = 67
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>sp|Q6QN04|RPAB5_CHILA DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1
Length = 67
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>sp|Q32P78|RPAB5_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos
taurus GN=POLR2L PE=3 SV=1
Length = 67
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 60/67 (89%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY L+K
Sbjct: 61 NYAPLEK 67
>sp|Q9GR61|RPAB5_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Caenorhabditis elegans GN=rpb-10 PE=3 SV=1
Length = 67
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIG+KW+TYL LQ++Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ L+K
Sbjct: 61 NYHPLEK 67
>sp|A8Y1E9|RPAB5_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Caenorhabditis briggsae GN=rpb-10 PE=3 SV=1
Length = 67
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 61/67 (91%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGKVIG+KW+TYL LQ++Y EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 61 NYNTLDK 67
NY+ L+K
Sbjct: 61 NYHPLEK 67
>sp|Q55AB6|RPAB5_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc5
OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1
Length = 70
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 57/65 (87%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIGNKWD YL LLQ DY EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 61 NYNTL 65
NY L
Sbjct: 61 NYTPL 65
>sp|O13877|RPAB5_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb10 PE=1 SV=2
Length = 71
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 58/68 (85%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCF+CGKVIG+KWDTYL LLQ D EG+ALD LGL RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 61 NYNTLDKS 68
YN L K
Sbjct: 61 CYNPLSKQ 68
>sp|P22139|RPAB5_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RPB10 PE=1 SV=2
Length = 70
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW++YL+LLQ D EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>sp|Q75BV8|RPAB5_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB10 PE=3 SV=1
Length = 70
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL LGL RYCCRRM++THVDLIEK
Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKF 60
Query: 60 LNYNTLDKSD 69
L YN L+K D
Sbjct: 61 LRYNPLEKRD 70
>sp|Q8SRS6|RPAB5_ENCCU DNA-directed RNA polymerases I, II, and III subunit RPABC5
OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPB10
PE=3 SV=1
Length = 72
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCGK I +KW+ Y +LL+ D + +ALD LG+ R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 61 NYNTL 65
++ +
Sbjct: 61 KFDIV 65
>sp|Q8TVB4|RPON_METKA DNA-directed RNA polymerase subunit N OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rpoN PE=3 SV=1
Length = 72
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKL 59
MIIP+RCFTCG+ I + W+ Y++L++ + E G+ALD LG+ RYCCRRM ++HVDL+E+
Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEES 60
Query: 60 LNYNT 64
L Y
Sbjct: 61 LPYTP 65
>sp|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=rpoN PE=3 SV=1
Length = 66
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 48/63 (76%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG +IG+KW+ ++ + G LD LG+ RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoN
PE=1 SV=1
Length = 66
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 47/62 (75%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW +++ + A G LD LG+ RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 61 NY 62
+Y
Sbjct: 61 HY 62
>sp|C3N8S2|RPON_SULIY DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|C3NMP6|RPON_SULIN DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1
Length = 66
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|C3MZ09|RPON_SULIM DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|C3MJQ1|RPON_SULIL DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|C4KJ97|RPON_SULIK DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1
Length = 66
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|C3N058|RPON_SULIA DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoN PE=3 SV=1
Length = 66
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 61 NYN 63
+Y
Sbjct: 61 HYT 63
>sp|A0B6E7|RPON_METTP DNA-directed RNA polymerase subunit N OS=Methanosaeta thermophila
(strain DSM 6194 / PT) GN=rpoN PE=3 SV=1
Length = 61
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI + W+ Y + ++++ P G +D LG+ RYCCRRML++HV+++E L
Sbjct: 1 MIPVRCFSCGKVISSVWEEYRERIKSE-PPGKVMDDLGIERYCCRRMLLSHVEVVEMLRR 59
Query: 62 YN 63
Y
Sbjct: 60 YQ 61
>sp|O59298|RPON_PYRHO DNA-directed RNA polymerase subunit N OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=rpoN PE=3 SV=2
Length = 65
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYKV 64
>sp|P60292|RPON_PYRFU DNA-directed RNA polymerase subunit N OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoN
PE=3 SV=1
Length = 65
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYRV 64
>sp|P60291|RPON_PYRAB DNA-directed RNA polymerase subunit N OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoN PE=3 SV=1
Length = 65
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ ++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIM 60
Query: 61 NYNT 64
+Y
Sbjct: 61 HYRV 64
>sp|A4YIM8|RPON_METS5 DNA-directed RNA polymerase subunit N OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1
Length = 66
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG +I +KWD + ++A G LD L + R CCRR L+THVD+I +++
Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVV 60
Query: 61 NYN 63
NY
Sbjct: 61 NYT 63
>sp|Q5JJC9|RPON_PYRKO DNA-directed RNA polymerase subunit N OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoN PE=3
SV=1
Length = 65
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKV+ +K+ + ++A G LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 61 NYNT 64
Y
Sbjct: 61 VYKV 64
>sp|P39472|RPON_SULAC DNA-directed RNA polymerase subunit N OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) GN=rpoN PE=3 SV=1
Length = 66
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIP+RCFTCG V+ +KW+ + + + L LG+ RYCCRRML++HV++I +++
Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREII 60
Query: 61 NY 62
+Y
Sbjct: 61 HY 62
>sp|Q46CK8|RPON_METBF DNA-directed RNA polymerase subunit N OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rpoN PE=3 SV=1
Length = 62
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRML++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>sp|A3DMR0|RPON_STAMF DNA-directed RNA polymerase subunit N OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rpoN PE=3 SV=1
Length = 66
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG IG+ W+ + ++A G LD LG+ RYCCRRM ++H+++ ++L
Sbjct: 1 MMFPVRCFTCGAPIGHLWEEFKKRVEAGEDPGKVLDDLGVKRYCCRRMFLSHIEISYEIL 60
Query: 61 NYNTLD 66
N+ +
Sbjct: 61 NFPKVS 66
>sp|A3MXZ9|RPON_PYRCJ DNA-directed RNA polymerase subunit N OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rpoN PE=3 SV=1
Length = 66
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK +G+ + + + A G LD LG+VRYCCRR LM HV+ I+ LL
Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKKRVLAGEHPGRVLDELGVVRYCCRRTLMAHVEWIDDLL 60
Query: 61 NYN 63
Y
Sbjct: 61 VYE 63
>sp|Q8PW43|RPON_METMA DNA-directed RNA polymerase subunit N OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rpoN PE=3 SV=1
Length = 62
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRM ++HV+LI+ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>sp|B6YSQ7|RPON_THEON DNA-directed RNA polymerase subunit N OS=Thermococcus onnurineus
(strain NA1) GN=rpoN PE=3 SV=1
Length = 65
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+PVRCFTCGKVIG+K+ + ++ LD LG+ RYCCRR L++HV+LI++++
Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVM 60
Query: 61 NYNT 64
Y
Sbjct: 61 VYKV 64
>sp|Q8TT41|RPON_METAC DNA-directed RNA polymerase subunit N OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rpoN PE=3 SV=1
Length = 62
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRM ++HV+L++ L
Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>sp|B8GEG1|RPON_METPE DNA-directed RNA polymerase subunit N OS=Methanosphaerula
palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
GN=rpoN PE=3 SV=1
Length = 62
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ + A G LD LGL +YCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISTAWEEFKQRRDAGEDPGAILDDLGLTQYCCRRMLLTHKEIIDELNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>sp|A8M9S4|RPON_CALMQ DNA-directed RNA polymerase subunit N OS=Caldivirga
maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM
10307 / IC-167) GN=rpoN PE=3 SV=1
Length = 67
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RC+TCG+ +G+ W+ + + + A G LD L + RYCCRR L+ HV+LI ++L
Sbjct: 1 MIVPIRCWTCGRPLGHLWEPFRNRVLAGEDPGKVLDDLHVTRYCCRRTLLAHVELINQVL 60
Query: 61 NYNTLDK 67
Y ++K
Sbjct: 61 PYGLIEK 67
>sp|A4WNA8|RPON_PYRAR DNA-directed RNA polymerase subunit N OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rpoN PE=3 SV=1
Length = 65
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCGK +G+ + + + A G LD LGLVRYCCRR LM HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKQRVLAGEHPGKVLDDLGLVRYCCRRTLMAHVEWIDDVL 60
Query: 61 NYN 63
Y
Sbjct: 61 IYE 63
>sp|A2SSV3|RPON_METLZ DNA-directed RNA polymerase subunit N OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoN
PE=3 SV=1
Length = 62
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 41/62 (66%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ Y A + LD+LGL RYCCRRML++H + +++L
Sbjct: 1 MIPVRCFTCGKVISTVWEEYQQRKAAGEDPKEILDSLGLDRYCCRRMLLSHKETVDELYP 60
Query: 62 YN 63
Y
Sbjct: 61 YT 62
>sp|Q9YB47|RPON_AERPE DNA-directed RNA polymerase subunit N OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpoN PE=3 SV=1
Length = 77
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
M+ PVRCFTCG+ +G+ W + +L+ + G+ALD LG+ RYCCRR L T V IE
Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAA 60
Query: 61 NYN 63
Y
Sbjct: 61 KYR 63
>sp|A7IAH1|RPON_METB6 DNA-directed RNA polymerase subunit N OS=Methanoregula boonei
(strain 6A8) GN=rpoN PE=3 SV=1
Length = 62
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKVI W+ Y + LD LG+ RYCCRRML+TH ++I++L
Sbjct: 1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>sp|B1YC34|RPON_PYRNV DNA-directed RNA polymerase subunit N OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoN PE=3 SV=1
Length = 66
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MIIPVRCFTCG+ +G+ + + + A G+ LD+LG+ RYCCRR L++HV+ I+ +L
Sbjct: 1 MIIPVRCFTCGRPLGHLYPIFKRRVLAGERPGEVLDSLGVYRYCCRRTLLSHVEWIDDVL 60
Query: 61 NYN 63
Y
Sbjct: 61 AYE 63
>sp|Q18G60|RPON_HALWD DNA-directed RNA polymerase subunit N OS=Haloquadratum walsbyi
(strain DSM 16790) GN=rpoN PE=3 SV=1
Length = 64
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG VIG WD + + + G+ LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKQRARDGNEDPGEVLDDLGIKRHCCRRMMVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 APYQ 64
>sp|B9LPW4|RPON_HALLT DNA-directed RNA polymerase subunit N OS=Halorubrum lacusprofundi
(strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34)
GN=rpoN PE=3 SV=1
Length = 64
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKL 59
M+IPVRCFTCG V+G W+ + + + D G LD LG+ R+CCRRM+++H DL++ +
Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGKVLDELGVDRHCCRRMMVSHRDLVDVV 60
Query: 60 LNYN 63
Y
Sbjct: 61 SPYQ 64
>sp|O29135|RPON_ARCFU DNA-directed RNA polymerase subunit N OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoN PE=3 SV=1
Length = 76
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 3 IPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 62
P+RCF+CG VIG+ +D Y L +ALD LG+ RYCCRRM +TH +I++L +
Sbjct: 12 FPIRCFSCGAVIGHLYDEYKQKLSEGKSPKEALDELGIERYCCRRMFITHKSVIKELSRF 71
Query: 63 N 63
+
Sbjct: 72 H 72
>sp|Q0W8C7|RPON_UNCMA DNA-directed RNA polymerase subunit N OS=Uncultured methanogenic
archaeon RC-I GN=rpoN PE=3 SV=1
Length = 71
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 9/71 (12%)
Query: 2 IIPVRCFTCGKVIGNKWDTY--------LDLLQADYPE-GDALDALGLVRYCCRRMLMTH 52
+IPVRCFTCGKVI W+ Y ++L + + GD LD LG+ RYCCRRML++H
Sbjct: 1 MIPVRCFTCGKVISEVWEEYKARVEERKMNLQHGEVLKVGDILDDLGVERYCCRRMLLSH 60
Query: 53 VDLIEKLLNYN 63
V+L++ L Y
Sbjct: 61 VELVDVLAPYQ 71
>sp|A3CWI3|RPON_METMJ DNA-directed RNA polymerase subunit N OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpoN
PE=3 SV=1
Length = 62
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%)
Query: 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61
+IPVRCFTCGKV+ W + + A LD LGL RYCCRRML+TH + +E L
Sbjct: 1 MIPVRCFTCGKVVSTAWKEFKERRDAGEDPKRILDDLGLERYCCRRMLLTHKETVEDLNP 60
Query: 62 YN 63
Y
Sbjct: 61 YQ 62
>sp|P29199|RPON_HALMA DNA-directed RNA polymerase subunit N OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rpoN PE=3 SV=1
Length = 66
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 1 MIIPVRCFTCGKVIGNKWDTY-LDLLQADYPE--GDALDALGLVRYCCRRMLMTHVDLIE 57
M++PVRCFTCG V+G W+ + +A+ PE LD LG+ R+CCRRML++H DL++
Sbjct: 1 MMVPVRCFTCGNVVGEHWEEFKARTREAEEPEDPEKVLDELGVERHCCRRMLVSHKDLVD 60
Query: 58 KLLNYN 63
+ Y
Sbjct: 61 IVSPYQ 66
>sp|A1RSD9|RPON_PYRIL DNA-directed RNA polymerase subunit N OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rpoN PE=3 SV=1
Length = 66
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
MI+P+RCFTCGK +G+ + T+ + A G LD LG+ RYCCRR L+ HV+ I+ LL
Sbjct: 1 MIVPIRCFTCGKPLGHLYITFKHRVLAGEHPGRVLDELGVHRYCCRRTLIAHVEWIDDLL 60
Query: 61 NYN 63
Y
Sbjct: 61 VYE 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.143 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,166,160
Number of Sequences: 539616
Number of extensions: 946935
Number of successful extensions: 2505
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2411
Number of HSP's gapped (non-prelim): 75
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)