Query 035172
Match_columns 71
No_of_seqs 100 out of 231
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_J DNA-directed RNA polyme 100.0 2.8E-47 9.7E-52 237.2 4.8 68 1-68 1-69 (70)
2 4ayb_N DNA-directed RNA polyme 100.0 2.2E-46 7.4E-51 231.2 2.0 64 1-64 1-64 (66)
3 1ef4_A Subunit N, DNA-directed 100.0 1E-42 3.5E-47 208.5 1.7 55 2-56 1-55 (55)
4 1nc8_A Nucleocapsid protein; H 85.8 0.25 8.7E-06 24.5 0.9 10 4-13 6-15 (29)
5 2fk4_A Protein E6; zinc bindin 83.9 0.7 2.4E-05 27.8 2.4 25 3-29 23-47 (75)
6 1dsq_A Nucleic acid binding pr 82.6 0.44 1.5E-05 23.1 0.9 10 4-13 2-11 (26)
7 1i4o_C X-linked IAP, baculovir 78.6 0.33 1.1E-05 32.5 -0.5 14 5-19 79-92 (141)
8 2k5c_A Uncharacterized protein 78.5 1 3.4E-05 28.9 1.8 29 5-35 9-37 (95)
9 2poi_A Baculoviral IAP repeat- 75.6 0.76 2.6E-05 28.6 0.6 12 5-16 56-67 (94)
10 3hl5_A Baculoviral IAP repeat- 71.5 1.1 3.7E-05 27.7 0.6 12 5-16 47-58 (95)
11 3m1d_A Baculoviral IAP repeat- 71.1 1.1 3.9E-05 27.2 0.6 12 5-16 47-58 (85)
12 3siq_A Apoptosis 1 inhibitor; 71.0 1.4 4.8E-05 29.5 1.1 11 5-15 71-81 (136)
13 1lv3_A Hypothetical protein YA 71.0 1.3 4.6E-05 26.6 0.9 13 3-15 8-20 (68)
14 2qra_D XIAP, baculoviral IAP r 70.9 1.1 3.9E-05 28.8 0.6 12 5-16 73-84 (111)
15 3mup_A Baculoviral IAP repeat- 69.3 1.3 4.4E-05 28.8 0.6 12 5-16 55-66 (122)
16 2vm5_A Baculoviral IAP repeat- 68.3 1.4 4.7E-05 27.9 0.6 12 5-16 57-68 (106)
17 2qfa_A Baculoviral IAP repeat- 67.2 1.5 5.2E-05 28.8 0.6 11 5-15 55-65 (142)
18 1l8d_A DNA double-strand break 66.7 2.8 9.6E-05 25.4 1.7 11 6-16 49-59 (112)
19 1jd5_A DIAP1, apoptosis 1 inhi 65.4 1.7 5.8E-05 28.4 0.6 12 5-16 61-72 (124)
20 1d0q_A DNA primase; zinc-bindi 65.0 5 0.00017 24.4 2.7 30 6-38 60-89 (103)
21 2kvf_A Zinc finger and BTB dom 63.7 3.2 0.00011 17.6 1.2 15 4-18 3-17 (28)
22 1klr_A Zinc finger Y-chromosom 63.3 3.5 0.00012 17.4 1.3 16 4-19 2-17 (30)
23 1znf_A 31ST zinc finger from X 62.9 4 0.00014 17.1 1.5 15 4-18 1-15 (27)
24 2i3h_A Baculoviral IAP repeat- 62.5 2 7E-05 28.5 0.6 12 5-16 83-94 (133)
25 1rik_A E6APC1 peptide; E6-bind 62.4 3.3 0.00011 17.6 1.1 16 4-19 2-17 (29)
26 1ard_A Yeast transcription fac 61.1 4.4 0.00015 17.1 1.4 16 4-19 2-17 (29)
27 3d9t_A Baculoviral IAP repeat- 60.8 2.3 8E-05 26.2 0.6 12 5-16 49-60 (97)
28 1se0_A Apoptosis 1 inhibitor; 60.5 2.3 8E-05 27.3 0.6 11 5-15 49-59 (116)
29 1g73_C Inhibitors of apoptosis 60.1 2.4 8.2E-05 27.4 0.6 12 5-16 61-72 (121)
30 2lvr_A Zinc finger and BTB dom 63.5 2 6.8E-05 18.4 0.0 15 4-18 3-17 (30)
31 1wfl_A Zinc finger protein 216 58.6 3.5 0.00012 25.2 1.1 13 3-15 24-36 (74)
32 3t6p_A Baculoviral IAP repeat- 58.0 1.4 4.8E-05 32.6 -0.9 12 5-16 41-52 (345)
33 2lo3_A SAGA-associated factor 57.7 3 0.0001 23.4 0.6 18 6-25 19-36 (44)
34 2kvh_A Zinc finger and BTB dom 56.6 4.9 0.00017 17.0 1.2 15 4-18 3-17 (27)
35 1a1t_A Nucleocapsid protein; s 56.6 3.8 0.00013 22.3 0.9 10 4-13 12-21 (55)
36 2ec7_A GAG polyprotein (PR55GA 56.4 3.9 0.00013 22.0 0.9 10 4-13 6-15 (49)
37 1paa_A Yeast transcription fac 56.3 5.8 0.0002 16.9 1.4 15 4-18 2-16 (30)
38 2kvg_A Zinc finger and BTB dom 55.3 4.4 0.00015 17.4 0.9 15 4-18 3-17 (27)
39 1x4w_A Hypothetical protein FL 54.2 4.6 0.00016 24.2 1.1 13 3-15 14-26 (67)
40 2kw0_A CCMH protein; oxidoredu 53.7 9.8 0.00034 23.7 2.6 34 5-38 24-66 (90)
41 3py7_A Maltose-binding peripla 51.9 8.5 0.00029 28.3 2.4 27 3-31 472-498 (523)
42 2m0e_A Zinc finger and BTB dom 51.8 6 0.00021 16.4 1.0 14 4-17 2-15 (29)
43 1a6b_B Momulv, zinc finger pro 50.7 5.2 0.00018 21.4 0.8 10 4-13 10-19 (40)
44 3na7_A HP0958; flagellar bioge 50.3 4.4 0.00015 28.1 0.6 11 5-15 223-233 (256)
45 2hl7_A Cytochrome C-type bioge 49.5 12 0.0004 23.0 2.4 34 5-38 27-69 (84)
46 2a51_A Nucleocapsid protein; s 49.1 5.9 0.0002 20.2 0.9 9 5-13 1-9 (39)
47 2lvt_A Zinc finger and BTB dom 54.4 3.7 0.00012 17.6 0.0 14 4-17 2-15 (29)
48 2ihx_A Nucleocapsid (NC) prote 48.5 6.2 0.00021 22.0 1.0 10 4-13 4-13 (61)
49 2m0f_A Zinc finger and BTB dom 48.2 7.7 0.00026 16.1 1.1 15 4-18 2-16 (29)
50 2m0d_A Zinc finger and BTB dom 47.8 8.1 0.00028 16.1 1.1 14 4-17 3-16 (30)
51 2elt_A Zinc finger protein 406 47.4 8.1 0.00028 17.3 1.1 15 4-18 9-23 (36)
52 2elr_A Zinc finger protein 406 46.4 10 0.00034 16.9 1.4 16 4-19 9-24 (36)
53 2lvu_A Zinc finger and BTB dom 51.8 4.3 0.00015 17.0 0.0 14 4-17 2-15 (26)
54 2els_A Zinc finger protein 406 45.8 8.7 0.0003 17.3 1.1 15 4-18 9-23 (36)
55 2elv_A Zinc finger protein 406 45.7 9.2 0.00031 17.2 1.2 15 4-18 9-23 (36)
56 1p7a_A BF3, BKLF, kruppel-like 45.3 11 0.00037 17.0 1.4 15 4-18 11-25 (37)
57 1u6p_A GAG polyprotein; MLV, A 45.1 7.4 0.00025 22.2 0.9 10 4-13 23-32 (56)
58 1wfp_A Zinc finger (AN1-like) 45.1 7.8 0.00027 23.6 1.1 13 3-15 24-36 (74)
59 1wfh_A Zinc finger (AN1-like) 44.8 7.3 0.00025 23.1 0.9 13 3-15 14-26 (64)
60 1qxf_A GR2, 30S ribosomal prot 44.3 7 0.00024 23.5 0.8 14 3-16 25-38 (66)
61 1rim_A E6APC2 peptide; E6-bind 43.9 11 0.00038 16.9 1.4 15 4-18 2-16 (33)
62 2elx_A Zinc finger protein 406 43.8 10 0.00035 16.7 1.2 15 4-18 7-21 (35)
63 2bl6_A Nucleocapsid protein P1 43.6 7.9 0.00027 19.5 0.8 9 5-13 1-9 (37)
64 1wg2_A Zinc finger (AN1-like) 43.5 8 0.00027 22.9 0.9 13 3-15 14-26 (64)
65 1njq_A Superman protein; zinc- 43.5 9.8 0.00034 17.6 1.1 16 4-19 6-21 (39)
66 2i5o_A DNA polymerase ETA; zin 42.8 6.5 0.00022 21.0 0.4 13 4-16 9-21 (39)
67 2elp_A Zinc finger protein 406 42.6 10 0.00036 17.1 1.1 14 4-17 9-22 (37)
68 2elo_A Zinc finger protein 406 42.5 9.5 0.00032 17.2 1.0 15 4-18 9-23 (37)
69 1nyp_A Pinch protein; LIM doma 42.5 7.8 0.00027 20.8 0.7 14 2-15 3-16 (66)
70 1zfo_A LAsp-1; LIM domain, zin 42.4 9.8 0.00034 18.7 1.0 12 4-15 3-14 (31)
71 2xzm_5 Ribosomal protein S26E 41.6 7.5 0.00026 25.7 0.6 14 3-16 19-32 (119)
72 3h0g_L DNA-directed RNA polyme 41.3 9 0.00031 22.5 0.9 11 4-14 38-48 (63)
73 2elq_A Zinc finger protein 406 41.1 12 0.00039 16.8 1.2 16 4-19 9-24 (36)
74 3mhs_E SAGA-associated factor 41.1 7.4 0.00025 24.9 0.6 11 6-16 77-87 (96)
75 2kfq_A FP1; protein, de novo p 41.1 8.3 0.00028 17.2 0.6 13 4-16 2-14 (32)
76 3sp4_A Aprataxin-like protein; 40.9 17 0.00057 25.4 2.4 22 4-25 169-190 (204)
77 2ehe_A Four and A half LIM dom 38.4 12 0.0004 21.0 1.1 13 3-15 14-26 (82)
78 2cqf_A RNA-binding protein LIN 38.3 10 0.00036 21.3 0.9 10 4-13 7-16 (63)
79 2li8_A Protein LIN-28 homolog 38.0 10 0.00034 22.3 0.8 10 4-13 24-33 (74)
80 2egq_A FHL1 protein; LIM domai 38.0 12 0.0004 20.6 1.0 14 3-16 14-27 (77)
81 2emb_A Zinc finger protein 473 37.9 13 0.00046 17.5 1.1 15 4-18 12-26 (44)
82 1x6a_A LIMK-2, LIM domain kina 37.1 13 0.00043 20.8 1.1 13 3-15 14-26 (81)
83 3u5c_a 40S ribosomal protein S 36.7 9.9 0.00034 25.1 0.6 14 3-16 19-32 (119)
84 3bbn_N Ribosomal protein S14; 36.6 16 0.00054 23.0 1.5 16 34-49 72-87 (100)
85 2iyb_E Testin, TESS, TES; LIM 36.1 11 0.00037 20.4 0.7 11 5-15 3-13 (65)
86 1srk_A Zinc finger protein ZFP 36.0 16 0.00055 16.1 1.2 15 4-18 7-21 (35)
87 1wim_A KIAA0161 protein; ring 35.9 24 0.00082 20.3 2.2 11 3-13 49-61 (94)
88 1wyh_A SLIM 2, skeletal muscle 35.8 16 0.00053 19.8 1.3 13 3-15 4-16 (72)
89 1wff_A Riken cDNA 2810002D23 p 35.6 13 0.00046 23.0 1.1 12 4-15 25-36 (85)
90 3j20_W 30S ribosomal protein S 35.5 12 0.0004 22.2 0.8 14 3-16 33-46 (63)
91 2ytb_A Zinc finger protein 32; 35.5 18 0.00062 16.6 1.4 15 4-18 11-25 (42)
92 3sei_A Caskin-1; SAM domain, p 35.3 36 0.0012 21.9 3.2 29 34-62 116-144 (149)
93 2js9_A Saposin-like protein fa 35.1 23 0.00077 21.8 2.1 32 9-40 66-97 (99)
94 1x68_A FHL5 protein; four-and- 35.1 13 0.00046 20.5 0.9 14 3-16 4-17 (76)
95 1wig_A KIAA1808 protein; LIM d 34.6 14 0.0005 20.5 1.1 14 3-16 4-17 (73)
96 1twf_L ABC10-alpha, DNA-direct 34.5 13 0.00045 22.0 0.9 9 4-12 45-53 (70)
97 2emx_A Zinc finger protein 268 34.5 17 0.00057 17.1 1.2 16 4-19 10-25 (44)
98 2yte_A Zinc finger protein 473 34.4 20 0.00067 16.5 1.4 15 4-18 10-24 (42)
99 2eos_A B-cell lymphoma 6 prote 34.4 21 0.0007 16.6 1.5 15 4-18 11-25 (42)
100 2epc_A Zinc finger protein 32; 34.3 17 0.0006 16.7 1.2 15 4-18 11-25 (42)
101 2ept_A Zinc finger protein 32; 34.1 18 0.0006 16.7 1.2 15 4-18 10-24 (41)
102 2eof_A Zinc finger protein 268 34.1 17 0.00058 16.9 1.1 16 4-19 12-27 (44)
103 2jsp_A Transcriptional regulat 34.1 39 0.0013 20.9 3.1 34 5-41 22-56 (87)
104 2au3_A DNA primase; zinc ribbo 33.9 27 0.00091 25.6 2.6 29 6-37 57-85 (407)
105 1gh9_A 8.3 kDa protein (gene M 33.8 12 0.0004 22.3 0.6 10 3-13 3-12 (71)
106 2epv_A Zinc finger protein 268 33.5 18 0.00062 17.1 1.2 16 4-19 12-27 (44)
107 2em4_A Zinc finger protein 28 33.2 18 0.00062 17.2 1.2 15 4-18 12-26 (46)
108 2en2_A B-cell lymphoma 6 prote 32.8 18 0.00062 16.7 1.1 15 4-18 11-25 (42)
109 2ytf_A Zinc finger protein 268 32.7 19 0.00065 17.0 1.2 16 4-19 12-27 (46)
110 2juj_A E3 ubiquitin-protein li 32.7 17 0.00058 21.2 1.1 23 21-43 11-33 (56)
111 3u5c_b RP61, YS20, 40S ribosom 32.6 15 0.0005 22.9 0.9 14 3-16 52-65 (82)
112 1dxg_A Desulforedoxin; non-hem 32.4 14 0.00047 18.9 0.6 11 6-16 8-18 (36)
113 1hbk_A ACBP, acyl-COA binding 32.4 46 0.0016 19.9 3.1 29 17-61 57-85 (89)
114 2eon_A ZFP-95, zinc finger pro 32.2 23 0.00078 16.9 1.5 15 4-18 12-26 (46)
115 2eow_A Zinc finger protein 347 32.1 19 0.00066 17.0 1.2 16 4-19 12-27 (46)
116 2enf_A Zinc finger protein 347 32.0 23 0.0008 16.7 1.5 15 4-18 12-26 (46)
117 2qyp_A Proactivator polypeptid 31.7 15 0.00053 21.3 0.9 32 9-40 49-80 (91)
118 2elm_A Zinc finger protein 406 31.5 19 0.00066 16.4 1.1 15 4-18 9-23 (37)
119 2eoo_A ZFP-95, zinc finger pro 31.5 20 0.0007 17.0 1.2 16 4-19 12-27 (46)
120 1of9_A Pore-forming peptide am 31.2 16 0.00053 21.0 0.8 31 10-40 46-76 (77)
121 2enc_A Zinc finger protein 224 31.2 21 0.00071 16.9 1.2 16 4-19 12-27 (46)
122 2ep3_A Zinc finger protein 484 31.0 21 0.00072 16.9 1.2 16 4-19 12-27 (46)
123 2eou_A Zinc finger protein 473 30.9 22 0.00077 16.7 1.3 15 4-18 12-26 (44)
124 1k81_A EIF-2-beta, probable tr 30.8 17 0.00057 18.8 0.8 9 5-13 1-9 (36)
125 2emi_A Zinc finger protein 484 30.7 21 0.00073 16.8 1.2 16 4-19 12-27 (46)
126 2yti_A Zinc finger protein 347 30.7 23 0.0008 16.7 1.3 15 4-18 12-26 (46)
127 1nkl_A NK-lysin; saposin fold, 30.6 20 0.00067 20.6 1.2 31 10-40 45-75 (78)
128 2cu8_A Cysteine-rich protein 2 30.6 18 0.00061 19.9 1.0 14 3-16 8-21 (76)
129 2en7_A Zinc finger protein 268 30.5 23 0.00078 16.4 1.3 15 4-18 12-26 (44)
130 3f6q_B LIM and senescent cell 30.5 20 0.00069 19.0 1.2 12 4-15 11-22 (72)
131 2d8x_A Protein pinch; LIM doma 30.5 19 0.00064 19.5 1.0 11 6-16 33-43 (70)
132 2el5_A Zinc finger protein 268 30.4 22 0.00075 16.4 1.2 16 4-19 10-25 (42)
133 2yto_A Zinc finger protein 484 30.4 22 0.00075 16.9 1.2 15 4-18 12-26 (46)
134 2eor_A Zinc finger protein 224 30.3 21 0.00072 16.8 1.1 15 4-18 12-26 (46)
135 2eoq_A Zinc finger protein 224 30.2 24 0.00083 16.6 1.4 16 4-19 12-27 (46)
136 2em9_A Zinc finger protein 224 30.1 22 0.00076 16.7 1.2 15 4-18 12-26 (46)
137 2elz_A Zinc finger protein 224 30.1 26 0.0009 16.6 1.5 15 4-18 12-26 (46)
138 2ytm_A Zinc finger protein 28 30.1 24 0.00081 16.8 1.3 15 4-18 12-26 (46)
139 1v6g_A Actin binding LIM prote 29.9 19 0.00065 20.1 1.0 14 3-16 14-27 (81)
140 2yts_A Zinc finger protein 484 29.9 22 0.00077 16.7 1.2 15 4-18 12-26 (46)
141 2eov_A Zinc finger protein 484 29.9 27 0.00091 16.4 1.5 15 4-18 12-26 (46)
142 2yth_A Zinc finger protein 224 29.6 27 0.00092 16.5 1.5 16 4-19 12-27 (46)
143 2eox_A Zinc finger protein 473 29.6 19 0.00064 16.9 0.9 15 4-18 12-26 (44)
144 1yui_A GAGA-factor; complex (D 29.6 22 0.00074 17.7 1.1 16 4-19 24-39 (54)
145 2em6_A Zinc finger protein 224 29.5 27 0.00093 16.5 1.5 15 4-18 12-26 (46)
146 2xzm_6 RPS27E; ribosome, trans 29.5 17 0.00057 22.5 0.8 14 3-16 50-63 (81)
147 1x4l_A Skeletal muscle LIM-pro 29.5 19 0.00064 19.6 0.9 13 4-16 5-17 (72)
148 2em7_A Zinc finger protein 224 29.4 23 0.00079 16.7 1.2 15 4-18 12-26 (46)
149 3iz6_X 40S ribosomal protein S 29.3 19 0.00065 22.5 1.0 14 3-16 54-67 (86)
150 1x63_A Skeletal muscle LIM-pro 29.3 22 0.00075 19.7 1.2 13 3-15 14-26 (82)
151 1bbo_A Human enhancer-binding 29.3 26 0.00089 17.1 1.4 15 4-18 1-15 (57)
152 2emg_A Zinc finger protein 484 29.3 26 0.00091 16.5 1.4 14 4-17 12-25 (46)
153 3bqp_A Proactivator polypeptid 29.3 19 0.00065 19.9 0.9 31 10-40 47-77 (80)
154 2enh_A Zinc finger protein 28 29.2 26 0.00089 16.6 1.4 15 4-18 12-26 (46)
155 2yrj_A Zinc finger protein 473 29.1 24 0.00081 16.6 1.2 15 4-18 12-26 (46)
156 1x61_A Thyroid receptor intera 29.0 20 0.00067 19.4 1.0 12 4-15 5-16 (72)
157 2yu5_A Zinc finger protein 473 28.9 23 0.00078 16.6 1.1 16 4-19 12-27 (44)
158 2eoj_A Zinc finger protein 268 28.9 21 0.00071 16.6 1.0 15 4-18 12-26 (44)
159 2x48_A CAG38821; archeal virus 28.9 50 0.0017 16.7 2.6 29 16-44 19-47 (55)
160 2oo9_A E3 ubiquitin-protein li 28.9 21 0.00073 20.0 1.1 23 21-43 8-30 (46)
161 1jko_C HIN recombinase, DNA-in 28.9 54 0.0019 15.6 2.8 28 17-44 10-37 (52)
162 2eq2_A Zinc finger protein 347 28.8 26 0.00089 16.5 1.3 15 4-18 12-26 (46)
163 2d8z_A Four and A half LIM dom 28.7 22 0.00074 19.1 1.1 13 4-16 5-17 (70)
164 2emh_A Zinc finger protein 484 28.7 23 0.0008 16.7 1.1 15 4-18 12-26 (46)
165 2eq3_A Zinc finger protein 347 28.7 21 0.00072 16.8 1.0 15 4-18 12-26 (46)
166 2ene_A Zinc finger protein 347 28.6 24 0.00083 16.6 1.2 15 4-18 12-26 (46)
167 2l4z_A DNA endonuclease RBBP8, 28.6 23 0.00078 21.9 1.3 14 3-16 60-73 (123)
168 2en9_A Zinc finger protein 28 28.6 28 0.00095 16.5 1.4 15 4-18 12-26 (46)
169 2ep1_A Zinc finger protein 484 28.6 27 0.00092 16.4 1.4 15 4-18 12-26 (46)
170 2eop_A Zinc finger protein 268 28.6 28 0.00095 16.3 1.4 15 4-18 12-26 (46)
171 2epz_A Zinc finger protein 28 28.4 28 0.00096 16.4 1.4 15 4-18 12-26 (46)
172 2yso_A ZFP-95, zinc finger pro 28.4 24 0.00082 16.7 1.1 15 4-18 12-26 (46)
173 2eoy_A Zinc finger protein 473 28.4 24 0.00084 16.7 1.2 15 4-18 12-26 (46)
174 2ema_A Zinc finger protein 347 28.3 25 0.00085 16.6 1.2 15 4-18 12-26 (46)
175 2ytp_A Zinc finger protein 484 28.3 25 0.00085 16.7 1.2 15 4-18 12-26 (46)
176 2emk_A Zinc finger protein 28 28.2 30 0.001 16.4 1.5 15 4-18 12-26 (46)
177 2eml_A Zinc finger protein 28 28.2 25 0.00086 16.6 1.2 15 4-18 12-26 (46)
178 2emj_A Zinc finger protein 28 28.1 24 0.00083 16.7 1.1 15 4-18 12-26 (46)
179 2cur_A Skeletal muscle LIM-pro 28.1 19 0.00065 19.3 0.8 13 4-16 5-17 (69)
180 2eq1_A Zinc finger protein 347 28.1 26 0.0009 16.5 1.3 15 4-18 12-26 (46)
181 1v54_E Cytochrome C oxidase po 27.8 47 0.0016 21.5 2.8 26 9-41 74-99 (109)
182 2ytk_A Zinc finger protein 347 27.8 26 0.00088 16.5 1.2 15 4-18 12-26 (46)
183 2em8_A Zinc finger protein 224 27.7 26 0.00088 16.6 1.2 15 4-18 12-26 (46)
184 2eq0_A Zinc finger protein 347 27.7 25 0.00086 16.6 1.1 15 4-18 12-26 (46)
185 1x4k_A Skeletal muscle LIM-pro 27.6 22 0.00075 19.1 1.0 12 4-15 5-16 (72)
186 2cqu_A Peroxisomal D3,D2-enoyl 27.6 75 0.0026 20.2 3.7 30 16-61 68-97 (116)
187 3uk3_C Zinc finger protein 217 27.5 29 0.00098 17.0 1.4 15 4-18 4-18 (57)
188 2eoh_A Zinc finger protein 28 27.4 29 0.00099 16.4 1.4 15 4-18 12-26 (46)
189 2em5_A ZFP-95, zinc finger pro 27.4 26 0.0009 16.6 1.2 15 4-18 12-26 (46)
190 2yrm_A B-cell lymphoma 6 prote 27.4 32 0.0011 16.1 1.5 15 4-18 10-24 (43)
191 2epw_A Zinc finger protein 268 27.3 26 0.0009 16.4 1.2 16 4-19 12-27 (46)
192 2ytn_A Zinc finger protein 347 27.3 30 0.001 16.3 1.4 15 4-18 12-26 (46)
193 2emm_A ZFP-95, zinc finger pro 27.2 27 0.00092 16.4 1.2 16 4-19 12-27 (46)
194 2eom_A ZFP-95, zinc finger pro 27.2 29 0.001 16.5 1.4 15 4-18 12-26 (46)
195 2ytr_A Zinc finger protein 347 27.1 28 0.00096 16.3 1.3 15 4-18 12-26 (46)
196 2ab3_A ZNF29; zinc finger prot 27.0 24 0.00083 14.4 0.9 16 4-19 2-19 (29)
197 4b6d_A RAC GTPase-activating p 27.0 22 0.00075 20.1 0.9 14 2-15 17-30 (61)
198 1x3h_A Leupaxin; paxillin fami 26.9 24 0.00083 19.4 1.1 13 4-16 15-27 (80)
199 2adr_A ADR1; transcription reg 26.7 31 0.0011 17.1 1.4 16 4-19 2-17 (60)
200 2emz_A ZFP-95, zinc finger pro 26.6 30 0.001 16.3 1.4 15 4-18 12-26 (46)
201 2emf_A Zinc finger protein 484 26.6 28 0.00096 16.5 1.2 14 4-17 12-25 (46)
202 2cb8_A Acyl-COA-binding protei 26.6 47 0.0016 19.8 2.5 29 17-61 55-83 (87)
203 1g47_A Pinch protein; LIM doma 26.4 23 0.00077 19.3 0.9 11 6-16 41-51 (77)
204 2lbb_A Acyl COA binding protei 26.3 64 0.0022 19.9 3.1 30 16-61 63-92 (96)
205 1dl6_A Transcription factor II 26.2 21 0.00071 20.0 0.7 12 5-16 31-42 (58)
206 1iml_A CRIP, cysteine rich int 26.1 24 0.00081 19.4 1.0 12 6-17 29-40 (76)
207 2ytq_A Zinc finger protein 268 26.1 34 0.0012 16.1 1.5 15 4-18 12-26 (46)
208 2ytj_A Zinc finger protein 484 26.1 29 0.00099 16.3 1.2 15 4-18 12-26 (46)
209 2yu8_A Zinc finger protein 347 25.7 29 0.001 16.3 1.2 15 4-18 12-26 (46)
210 2epu_A Zinc finger protein 32; 25.6 25 0.00084 16.6 0.9 16 4-19 12-27 (45)
211 4ayb_P DNA-directed RNA polyme 25.6 26 0.00088 19.9 1.0 13 2-14 21-33 (48)
212 2ep2_A Zinc finger protein 484 25.6 30 0.001 16.3 1.2 15 4-18 12-26 (46)
213 2emy_A Zinc finger protein 268 25.4 30 0.001 16.3 1.2 16 4-19 12-27 (46)
214 2ysa_A Retinoblastoma-binding 25.1 21 0.00073 20.1 0.6 10 6-16 9-18 (55)
215 2epx_A Zinc finger protein 28 25.0 37 0.0013 15.9 1.5 15 4-18 12-26 (47)
216 2em3_A Zinc finger protein 28 25.0 31 0.0011 16.2 1.2 15 4-18 12-26 (46)
217 2el6_A Zinc finger protein 268 25.0 30 0.001 16.3 1.1 16 4-19 12-27 (46)
218 3noy_A 4-hydroxy-3-methylbut-2 24.9 36 0.0012 26.0 2.0 14 5-18 272-285 (366)
219 2en8_A Zinc finger protein 224 24.9 30 0.001 16.2 1.1 16 4-19 12-27 (46)
220 2em2_A Zinc finger protein 28 24.8 31 0.0011 16.3 1.2 15 4-18 12-26 (46)
221 2ely_A Zinc finger protein 224 24.8 28 0.00096 16.5 1.0 15 4-18 12-26 (46)
222 2odx_A Cytochrome C oxidase po 24.8 22 0.00075 21.5 0.7 11 4-14 56-66 (80)
223 3sks_A Putative oligoendopepti 24.7 53 0.0018 25.1 3.0 27 17-43 514-542 (567)
224 2el4_A Zinc finger protein 268 24.7 31 0.0011 16.2 1.1 15 4-18 12-26 (46)
225 2en3_A ZFP-95, zinc finger pro 24.6 31 0.0011 16.2 1.2 15 4-18 12-26 (46)
226 2ytg_A ZFP-95, zinc finger pro 24.5 30 0.001 16.3 1.1 15 4-18 12-26 (46)
227 2eq4_A Zinc finger protein 224 24.3 35 0.0012 15.9 1.3 15 4-18 12-26 (46)
228 2cuq_A Four and A half LIM dom 24.2 27 0.00093 19.2 1.0 13 4-16 15-27 (80)
229 1p35_A P35; cell death, baculo 24.2 16 0.00055 27.4 -0.0 36 5-45 102-137 (299)
230 2eme_A Zinc finger protein 473 24.0 33 0.0011 16.0 1.2 15 4-18 12-26 (46)
231 2em0_A Zinc finger protein 224 23.8 37 0.0013 15.9 1.4 15 4-18 12-26 (46)
232 2emp_A Zinc finger protein 347 23.7 34 0.0012 16.1 1.2 15 4-18 12-26 (46)
233 2eoe_A Zinc finger protein 347 23.7 30 0.001 16.2 1.0 15 4-18 12-26 (46)
234 1a7i_A QCRP2 (LIM1); LIM domai 23.6 27 0.00094 19.3 0.9 12 5-16 8-19 (81)
235 2y69_E Cytochrome C oxidase su 23.6 60 0.002 22.2 2.8 25 10-41 118-142 (152)
236 2epq_A POZ-, at HOOK-, and zin 23.4 30 0.001 16.2 1.0 15 4-18 10-24 (45)
237 2drp_A Protein (tramtrack DNA- 23.3 32 0.0011 17.4 1.1 16 4-19 10-25 (66)
238 2whn_A PILC, pilus assembly pr 23.1 49 0.0017 19.2 2.0 27 13-39 47-73 (116)
239 2gtg_A Proactivator polypeptid 23.0 32 0.0011 19.3 1.1 31 10-40 49-79 (83)
240 2lk0_A RNA-binding protein 5; 22.9 30 0.001 17.2 0.9 10 6-15 21-30 (32)
241 2ytt_A Zinc finger protein 473 22.8 40 0.0014 15.9 1.3 15 4-18 12-26 (46)
242 2ytd_A Zinc finger protein 473 22.7 37 0.0012 15.9 1.2 15 4-18 12-26 (46)
243 1sp2_A SP1F2; zinc finger, tra 22.5 45 0.0015 14.1 1.4 15 4-18 2-18 (31)
244 1vd4_A Transcription initiatio 22.5 30 0.001 17.9 0.9 13 4-16 39-51 (62)
245 1tc3_C Protein (TC3 transposas 22.3 72 0.0025 14.8 3.3 28 18-45 11-38 (51)
246 2ysp_A Zinc finger protein 224 22.2 31 0.0011 16.2 0.9 15 4-18 12-26 (46)
247 3ts2_A Protein LIN-28 homolog 22.2 27 0.00092 22.7 0.8 11 5-16 98-108 (148)
248 1loi_A Cyclic 3',5'-AMP specif 22.1 30 0.001 17.2 0.7 17 6-22 7-24 (26)
249 2dlo_A Thyroid receptor-intera 22.1 31 0.0011 19.1 1.0 13 4-16 15-27 (81)
250 2gle_A Neurabin-1; SAM domain, 22.0 1.1E+02 0.0038 16.8 3.8 26 30-56 42-67 (74)
251 2vut_I AREA, nitrogen regulato 21.9 23 0.00079 19.1 0.3 16 4-19 1-16 (43)
252 2en6_A Zinc finger protein 268 21.8 33 0.0011 16.1 0.9 15 4-18 12-26 (46)
253 1x64_A Alpha-actinin-2 associa 21.7 31 0.001 19.6 0.9 11 6-16 53-63 (89)
254 1st7_A ACBP, acyl-COA-binding 21.4 47 0.0016 19.7 1.7 29 17-61 54-82 (86)
255 2co8_A NEDD9 interacting prote 21.3 34 0.0012 19.3 1.0 11 6-16 44-54 (82)
256 1f2i_G Fusion of N-terminal 17 21.1 38 0.0013 17.4 1.1 14 4-17 49-62 (73)
257 2xqn_T Testin, TESS; metal-bin 21.1 34 0.0012 20.4 1.1 11 5-15 4-14 (126)
258 2dj7_A Actin-binding LIM prote 21.1 31 0.0011 19.5 0.8 11 5-15 16-26 (80)
259 2cor_A Pinch protein; LIM doma 21.1 36 0.0012 19.0 1.1 12 6-17 43-54 (79)
260 2ga1_A Protein of unknown func 21.0 60 0.0021 20.4 2.2 24 19-42 55-79 (106)
261 2eoz_A Zinc finger protein 473 20.9 35 0.0012 16.1 0.9 15 4-18 12-26 (46)
262 1zfd_A SWI5; DNA binding motif 20.8 50 0.0017 13.9 1.4 16 4-19 3-20 (32)
263 1x62_A C-terminal LIM domain p 20.6 32 0.0011 19.1 0.8 12 5-16 16-27 (79)
264 1ow5_A Serine/threonine-protei 20.6 64 0.0022 20.0 2.2 25 32-56 50-74 (85)
265 2en1_A Zinc finger protein 224 20.5 36 0.0012 16.0 0.9 15 4-18 12-26 (46)
266 1r71_A Transcriptional repress 20.5 71 0.0024 21.3 2.6 27 16-42 40-66 (178)
267 2dar_A PDZ and LIM domain prot 20.4 35 0.0012 19.4 1.0 12 4-15 25-36 (90)
268 1gj7_A Urokinase-type plasmino 20.1 28 0.00095 17.1 0.4 8 8-15 11-18 (26)
No 1
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=100.00 E-value=2.8e-47 Score=237.22 Aligned_cols=68 Identities=69% Similarity=1.344 Sum_probs=63.6
Q ss_pred CcccccccCCCccccchHHHHHHHHHccC-ChhhHHHhcCCcchhhhhHHHHhHHHHHHHhccCccccc
Q 035172 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADY-PEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKS 68 (71)
Q Consensus 1 MiiPvRCfTCGkvi~~~~e~y~~~v~~~~-~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~y~~~~~~ 68 (71)
||||||||||||+|||+||+|++++++|+ +|++|||+||++|||||||||||||+||+|++|++.+++
T Consensus 1 MiiPVRCFTCGkvi~~~we~y~~~~~~g~l~~~~~LD~Lg~~RyCCRrMllthvdlie~ll~y~~~~~~ 69 (70)
T 1twf_J 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKR 69 (70)
T ss_dssp CCCCSBCTTTCCBCTTCHHHHHHHHHTSCCCHHHHHHHTTCCSHHHHHHHHTBCCTHHHHHTCCC----
T ss_pred CCCCeecCCCCCChHHHHHHHHHHHHcCCCCHHHHHHHcCCcccchhhHHHHHHHHHHHHhcCCccccC
Confidence 99999999999999999999999999999 999999999999999999999999999999999987764
No 2
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=100.00 E-value=2.2e-46 Score=231.16 Aligned_cols=64 Identities=47% Similarity=1.137 Sum_probs=63.1
Q ss_pred CcccccccCCCccccchHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHHHHHhccCc
Q 035172 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT 64 (71)
Q Consensus 1 MiiPvRCfTCGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~y~~ 64 (71)
||||||||||||+|||+|++|++++++|+++++|||+||++|||||||||||||+||+|++|+.
T Consensus 1 MiIPVRCFTCGkvi~~k~~~y~~~~~~~~~~g~~LD~Lgl~ryCCRRm~LtHVdlid~ll~y~~ 64 (66)
T 4ayb_N 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHYTR 64 (66)
T ss_dssp CCCCSBCTTTCCBCHHHHHHHHHHHHTTCCHHHHHHHSSCCSSHHHHHHHTCCCCTTTTSTTCC
T ss_pred CCCCcccCCCcHhHHHHHHHHHHHHhcCCCHHHHHHHhCCceechhhhHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999984
No 3
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=100.00 E-value=1e-42 Score=208.51 Aligned_cols=55 Identities=45% Similarity=0.944 Sum_probs=53.8
Q ss_pred cccccccCCCccccchHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHH
Q 035172 2 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLI 56 (71)
Q Consensus 2 iiPvRCfTCGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdli 56 (71)
|||||||||||+|||+||+|++++++|++|+||||+||++|||||||||||||+|
T Consensus 1 iiPVRCFTCGkvi~~~we~y~~~~~~~~~~~~~LD~Lg~~RyCCRRMlLthvdli 55 (55)
T 1ef4_A 1 MIPVRCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLGLKRYCCRRMLISHVETW 55 (55)
T ss_dssp CCSSSCSCTTSCCHHHHHHHHHHHHHTCCHHHHHHHHTCSSHHHHHHHTTTCCCC
T ss_pred CCCeecCCCCCChhHHHHHHHHHHHcCCCHHHHHHHcCCceEeccccceeheecC
Confidence 7999999999999999999999999999999999999999999999999999975
No 4
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=85.83 E-value=0.25 Score=24.50 Aligned_cols=10 Identities=50% Similarity=1.364 Sum_probs=8.4
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
++.||.||+.
T Consensus 6 ~~~C~nCgk~ 15 (29)
T 1nc8_A 6 VIRCWNCGKE 15 (29)
T ss_dssp CCBCTTTSCB
T ss_pred CCEEEECCcc
Confidence 4679999986
No 5
>2fk4_A Protein E6; zinc binding domain, oncoprotein, metal binding protein; NMR {Human papillomavirus type 16} SCOP: g.90.1.1 PDB: 2ljz_A
Probab=83.88 E-value=0.7 Score=27.84 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=17.4
Q ss_pred ccccccCCCccccchHHHHHHHHHccC
Q 035172 3 IPVRCFTCGKVIGNKWDTYLDLLQADY 29 (71)
Q Consensus 3 iPvRCfTCGkvi~~~~e~y~~~v~~~~ 29 (71)
|+|||..|+|+++. .|=+..+..++
T Consensus 23 i~IRC~~C~k~L~~--~EK~~~~~~~~ 47 (75)
T 2fk4_A 23 LLIRCINCQKPLSP--EEKQRHLDKKQ 47 (75)
T ss_dssp SCCCCSSSCCCCCH--HHHHHHHHHCS
T ss_pred EEEEhHHcCCcCCH--HHHHHHHHCCC
Confidence 78999999999976 44344343443
No 6
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=82.59 E-value=0.44 Score=23.12 Aligned_cols=10 Identities=50% Similarity=1.195 Sum_probs=8.2
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
++.||.||+.
T Consensus 2 ~~~Cf~CG~~ 11 (26)
T 1dsq_A 2 GPVCFSCGKT 11 (26)
T ss_dssp CCBCTTTCCB
T ss_pred CCeeEeCCCC
Confidence 4689999985
No 7
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=78.59 E-value=0.33 Score=32.50 Aligned_cols=14 Identities=50% Similarity=1.441 Sum_probs=11.5
Q ss_pred ccccCCCccccchHH
Q 035172 5 VRCFTCGKVIGNKWD 19 (71)
Q Consensus 5 vRCfTCGkvi~~~~e 19 (71)
|+||.||..|.+ ||
T Consensus 79 V~Cf~C~~~L~~-We 92 (141)
T 1i4o_C 79 VQCFCCGGKLKN-WE 92 (141)
T ss_pred EEeccCCCEecC-CC
Confidence 799999999954 54
No 8
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=78.53 E-value=1 Score=28.88 Aligned_cols=29 Identities=17% Similarity=0.504 Sum_probs=19.9
Q ss_pred ccccCCCccccchHHHHHHHHHccCChhhHH
Q 035172 5 VRCFTCGKVIGNKWDTYLDLLQADYPEGDAL 35 (71)
Q Consensus 5 vRCfTCGkvi~~~~e~y~~~v~~~~~~~~vL 35 (71)
..|+-||+++ +|++-.+..-.-+.-.+++
T Consensus 9 ~~~PlCG~~L--~W~eLIeQML~~en~~ei~ 37 (95)
T 2k5c_A 9 AKCPICGSPL--KWEELIEEMLIIENFEEIV 37 (95)
T ss_dssp EECSSSCCEE--CHHHHHHHSTTCSTHHHHT
T ss_pred ccCCcCCCcc--CHHHHHHHHHhhccHHHHH
Confidence 3699999999 8998776654444444443
No 9
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=75.59 E-value=0.76 Score=28.55 Aligned_cols=12 Identities=42% Similarity=1.149 Sum_probs=10.4
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 56 V~Cf~C~~~l~~ 67 (94)
T 2poi_A 56 VRCFSCHAAVDR 67 (94)
T ss_dssp EEETTTCCEECC
T ss_pred EEcccCCCEeCC
Confidence 799999999954
No 10
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=71.54 E-value=1.1 Score=27.71 Aligned_cols=12 Identities=42% Similarity=1.162 Sum_probs=10.5
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 47 v~Cf~C~~~l~~ 58 (95)
T 3hl5_A 47 VKCFHCGGGLTD 58 (95)
T ss_dssp EEETTTCCEECC
T ss_pred EEecCCCCCccC
Confidence 789999999964
No 11
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=71.13 E-value=1.1 Score=27.17 Aligned_cols=12 Identities=50% Similarity=1.342 Sum_probs=10.6
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..+.+
T Consensus 47 v~Cf~C~~~l~~ 58 (85)
T 3m1d_A 47 VKCFCCGLMLDN 58 (85)
T ss_dssp EEETTTCCEECS
T ss_pred EEeCCcCCEecC
Confidence 799999999974
No 12
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=70.99 E-value=1.4 Score=29.47 Aligned_cols=11 Identities=64% Similarity=1.437 Sum_probs=10.3
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
|+||.||..+.
T Consensus 71 V~Cf~C~~~L~ 81 (136)
T 3siq_A 71 VKCFFCGVEIG 81 (136)
T ss_dssp EEETTTCCEEE
T ss_pred EEEeccCCEec
Confidence 79999999997
No 13
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=70.96 E-value=1.3 Score=26.65 Aligned_cols=13 Identities=54% Similarity=1.002 Sum_probs=10.8
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
..+.|.+|||++.
T Consensus 8 ~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 8 ITVNCPTCGKTVV 20 (68)
T ss_dssp CEEECTTTCCEEE
T ss_pred CcCcCCCCCCccc
Confidence 4567999999985
No 14
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=70.87 E-value=1.1 Score=28.78 Aligned_cols=12 Identities=42% Similarity=1.149 Sum_probs=10.5
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 73 V~Cf~C~~~L~~ 84 (111)
T 2qra_D 73 VRCFSCHAAVDR 84 (111)
T ss_dssp EEETTTCCEECC
T ss_pred EEcccCCCEeCC
Confidence 799999999954
No 15
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=69.28 E-value=1.3 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=10.5
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..+.+
T Consensus 55 V~Cf~C~~~L~~ 66 (122)
T 3mup_A 55 VKCFCCDGGLRC 66 (122)
T ss_dssp EEETTTCCEECC
T ss_pred EEecCcCCEecC
Confidence 789999999864
No 16
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=68.33 E-value=1.4 Score=27.92 Aligned_cols=12 Identities=58% Similarity=1.528 Sum_probs=10.4
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 57 V~Cf~C~~~L~~ 68 (106)
T 2vm5_A 57 VQCFSCGGCLGN 68 (106)
T ss_dssp EEETTTCCEEES
T ss_pred EEccccCCEecC
Confidence 799999999954
No 17
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=67.20 E-value=1.5 Score=28.81 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=10.1
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
|+||.||..|.
T Consensus 55 V~Cf~C~~~L~ 65 (142)
T 2qfa_A 55 AQCFFCFKELE 65 (142)
T ss_dssp EEETTTCCEEC
T ss_pred EEcCCCCCEec
Confidence 89999999995
No 18
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.65 E-value=2.8 Score=25.44 Aligned_cols=11 Identities=27% Similarity=1.005 Sum_probs=10.0
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
.|++||.++.+
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 59999999986
No 19
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=65.38 E-value=1.7 Score=28.43 Aligned_cols=12 Identities=50% Similarity=1.201 Sum_probs=10.4
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 61 V~Cf~C~~~L~~ 72 (124)
T 1jd5_A 61 VRCFSCGGGLMD 72 (124)
T ss_dssp EEETTTCCEEEC
T ss_pred EEecCCCCEecC
Confidence 799999999954
No 20
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=65.02 E-value=5 Score=24.43 Aligned_cols=30 Identities=37% Similarity=0.575 Sum_probs=18.3
Q ss_pred cccCCCccccchHHHHHHHHHccCChhhHHHhc
Q 035172 6 RCFTCGKVIGNKWDTYLDLLQADYPEGDALDAL 38 (71)
Q Consensus 6 RCfTCGkvi~~~~e~y~~~v~~~~~~~~vLd~L 38 (71)
.||+||+ =|+. -.|...+ +|.+-.+|+..|
T Consensus 60 ~Cf~cg~-gGd~-i~fv~~~-~~~sf~eA~~~L 89 (103)
T 1d0q_A 60 HCFGCGA-GGNA-FTFLMDI-EGIPFVEAAKRL 89 (103)
T ss_dssp EETTTCC-EECH-HHHHHHH-HTCCHHHHHHHH
T ss_pred EECCCCC-CCCH-HHHHHHH-hCCCHHHHHHHH
Confidence 5999995 2343 3444445 567777776544
No 21
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=63.69 E-value=3.2 Score=17.64 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+..+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKH 17 (28)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 678999999988754
No 22
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=63.30 E-value=3.5 Score=17.42 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=12.7
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+.......
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 5679999999887554
No 23
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=62.87 E-value=4 Score=17.05 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=11.4
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+.....+
T Consensus 1 ~~~C~~C~k~f~~~~ 15 (27)
T 1znf_A 1 XYKCGLCERSFVEKS 15 (27)
T ss_dssp -CBCSSSCCBCSSHH
T ss_pred CccCCCCCCcCCCHH
Confidence 567999999987754
No 24
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=62.54 E-value=2 Score=28.46 Aligned_cols=12 Identities=42% Similarity=0.838 Sum_probs=10.5
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 83 V~Cf~C~~~L~~ 94 (133)
T 2i3h_A 83 VRCFFCYGGLQS 94 (133)
T ss_dssp EEETTTCCEEEC
T ss_pred EEecccCCEeCC
Confidence 799999999954
No 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=62.39 E-value=3.3 Score=17.57 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.5
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 2 KFACPECPKRFMRSDH 17 (29)
T ss_dssp CEECSSSSCEESCSHH
T ss_pred CccCCCCCchhCCHHH
Confidence 6689999999877543
No 26
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=61.07 E-value=4.4 Score=17.06 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=12.5
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 5679999999877543
No 27
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=60.75 E-value=2.3 Score=26.23 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=10.4
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..+.+
T Consensus 49 v~Cf~C~~~l~~ 60 (97)
T 3d9t_A 49 VKCFCCDGGLRC 60 (97)
T ss_dssp EEETTTCCEEEC
T ss_pred EEecCcCCEecC
Confidence 799999999863
No 28
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=60.51 E-value=2.3 Score=27.31 Aligned_cols=11 Identities=64% Similarity=1.437 Sum_probs=10.2
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
|+||.||..|.
T Consensus 49 V~Cf~C~~~L~ 59 (116)
T 1se0_A 49 VKCFFCGVEIG 59 (116)
T ss_dssp EEETTTCCEEE
T ss_pred EEecCcCCEec
Confidence 79999999996
No 29
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=60.14 E-value=2.4 Score=27.45 Aligned_cols=12 Identities=42% Similarity=1.162 Sum_probs=10.4
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..|.+
T Consensus 61 V~Cf~C~~~L~~ 72 (121)
T 1g73_C 61 VKCFHCGGGLTD 72 (121)
T ss_dssp EEETTTCCEEES
T ss_pred EEcCcCCCCcCC
Confidence 799999999953
No 30
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=63.47 E-value=2 Score=18.44 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=11.5
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..++.+
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (30)
T 2lvr_A 3 PYVCIHCQRQFADPG 17 (30)
Confidence 667999999876643
No 31
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=58.62 E-value=3.5 Score=25.19 Aligned_cols=13 Identities=46% Similarity=1.009 Sum_probs=10.5
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
.+.||++|+|-++
T Consensus 24 ~~nRC~~CrKkvg 36 (74)
T 1wfl_A 24 KKNRCFMCRKKVG 36 (74)
T ss_dssp CTTBCSSSCCBCG
T ss_pred cCCcChhhCCccc
Confidence 3579999999865
No 32
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=57.99 E-value=1.4 Score=32.59 Aligned_cols=12 Identities=33% Similarity=0.924 Sum_probs=10.5
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
|+||.||..+.+
T Consensus 41 v~Cf~C~~~l~~ 52 (345)
T 3t6p_A 41 VKCFSCDGGLRC 52 (345)
T ss_dssp EEETTTCCEECC
T ss_pred EEecCCCCCccC
Confidence 789999999874
No 33
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=57.71 E-value=3 Score=23.43 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=12.3
Q ss_pred cccCCCccccchHHHHHHHH
Q 035172 6 RCFTCGKVIGNKWDTYLDLL 25 (71)
Q Consensus 6 RCfTCGkvi~~~~e~y~~~v 25 (71)
.|-.|||+|+= ++-.+-+
T Consensus 19 vC~~CgkPi~l--sAIvdHL 36 (44)
T 2lo3_A 19 VCEKCGKPLAL--TAIVDHL 36 (44)
T ss_dssp ECTTTCCEEET--TTHHHHH
T ss_pred hhcccCCcchH--HHHHHHH
Confidence 39999999964 4444444
No 34
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=56.62 E-value=4.9 Score=16.98 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFS 17 (27)
T ss_dssp CEECSSSSCEESSHH
T ss_pred CccCCCcChhhCCHH
Confidence 667999999887643
No 35
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=56.59 E-value=3.8 Score=22.28 Aligned_cols=10 Identities=60% Similarity=1.484 Sum_probs=7.5
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
|++||.||+.
T Consensus 12 ~~~C~~Cg~~ 21 (55)
T 1a1t_A 12 TVKCFNCGKE 21 (55)
T ss_dssp TCBCTTTCCB
T ss_pred CcceeeeCCC
Confidence 4679999874
No 36
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=56.42 E-value=3.9 Score=22.02 Aligned_cols=10 Identities=50% Similarity=1.364 Sum_probs=7.0
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
|++||.||+.
T Consensus 6 ~~~C~~Cg~~ 15 (49)
T 2ec7_A 6 VIRCWNCGKE 15 (49)
T ss_dssp CCBCTTTCCB
T ss_pred cCeeeecCCC
Confidence 4678888863
No 37
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=56.26 E-value=5.8 Score=16.86 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (30)
T 1paa_A 2 AYACGLCNRAFTRRD 16 (30)
T ss_dssp CSBCTTTCCBCSSSH
T ss_pred CcCCcccCcccCChH
Confidence 668999999887654
No 38
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=55.32 E-value=4.4 Score=17.36 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLA 17 (27)
T ss_dssp TEEETTTTEEESCHH
T ss_pred CcCCCCCCcccCCHH
Confidence 668999999887643
No 39
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.17 E-value=4.6 Score=24.16 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=11.0
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
.+.||+.|+|.++
T Consensus 14 ~~~rC~~C~kk~g 26 (67)
T 1x4w_A 14 SRRRCFQCQTKLE 26 (67)
T ss_dssp CTTBCSSSCCBCC
T ss_pred cCCcchhhCCeec
Confidence 3679999999986
No 40
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=53.72 E-value=9.8 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=23.9
Q ss_pred ccccCCCc--------cccchH-HHHHHHHHccCChhhHHHhc
Q 035172 5 VRCFTCGK--------VIGNKW-DTYLDLLQADYPEGDALDAL 38 (71)
Q Consensus 5 vRCfTCGk--------vi~~~~-e~y~~~v~~~~~~~~vLd~L 38 (71)
+||.-|.. +|+... .+=.+++++|++.++++|-|
T Consensus 24 LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 24 LRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp SBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 68988865 233322 45567788999999999843
No 41
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=51.94 E-value=8.5 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=19.2
Q ss_pred ccccccCCCccccchHHHHHHHHHccCCh
Q 035172 3 IPVRCFTCGKVIGNKWDTYLDLLQADYPE 31 (71)
Q Consensus 3 iPvRCfTCGkvi~~~~e~y~~~v~~~~~~ 31 (71)
+.|||..|+|+++. .|=...+.+++.-
T Consensus 472 ~~irc~~c~~~l~~--~ek~~~~~~~~~~ 498 (523)
T 3py7_A 472 LCIRCCYCGGKLTK--NEKHRHVLFNEPF 498 (523)
T ss_dssp SCCEETTTCCBCCH--HHHHHHHHTTCCE
T ss_pred eEEEHhHCCCcCCH--HHHHHHHHCCCCE
Confidence 57999999999976 5544555565543
No 42
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=51.80 E-value=6 Score=16.42 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=10.9
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|-.|..||+.....
T Consensus 2 ~~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 2 EHKCPHCDKKFNQV 15 (29)
T ss_dssp CCCCSSCCCCCCTT
T ss_pred CCcCCCCCcccCCH
Confidence 66799999987653
No 43
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=50.68 E-value=5.2 Score=21.43 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=8.0
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
.+.||.||+.
T Consensus 10 ~~~C~~Cgk~ 19 (40)
T 1a6b_B 10 RDQCAYCKEK 19 (40)
T ss_dssp SSSCSSSCCT
T ss_pred CCeeeECCCC
Confidence 4679999984
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.28 E-value=4.4 Score=28.13 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=9.8
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
|+|+.||+++-
T Consensus 223 v~Cp~CgRIL~ 233 (256)
T 3na7_A 223 ITCPYCGRILY 233 (256)
T ss_dssp EECTTTCCEEE
T ss_pred EECCCCCeeEE
Confidence 78999999993
No 45
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=49.53 E-value=12 Score=22.98 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=23.7
Q ss_pred ccccCCCc--------cccchH-HHHHHHHHccCChhhHHHhc
Q 035172 5 VRCFTCGK--------VIGNKW-DTYLDLLQADYPEGDALDAL 38 (71)
Q Consensus 5 vRCfTCGk--------vi~~~~-e~y~~~v~~~~~~~~vLd~L 38 (71)
+||.-|.. +|+... .+=.+++++|++.++++|-|
T Consensus 27 LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~ 69 (84)
T 2hl7_A 27 LRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp EECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 68888865 233322 45567788999999999854
No 46
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=49.12 E-value=5.9 Score=20.22 Aligned_cols=9 Identities=56% Similarity=1.482 Sum_probs=6.2
Q ss_pred ccccCCCcc
Q 035172 5 VRCFTCGKV 13 (71)
Q Consensus 5 vRCfTCGkv 13 (71)
|+||.||+.
T Consensus 1 i~C~~Cg~~ 9 (39)
T 2a51_A 1 LTCFNCGKP 9 (39)
T ss_dssp CBCTTTCCB
T ss_pred CeeeccCCC
Confidence 468888763
No 47
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=54.41 E-value=3.7 Score=17.58 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=10.7
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|-.|..||+..+..
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA 15 (29)
Confidence 56799999987654
No 48
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=48.51 E-value=6.2 Score=22.03 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=6.7
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
|..||.||+.
T Consensus 4 ~~~C~~Cg~~ 13 (61)
T 2ihx_A 4 RGLCYTCGSP 13 (61)
T ss_dssp TTBCSSSCCB
T ss_pred CCcccccCCC
Confidence 5667777763
No 49
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=48.18 E-value=7.7 Score=16.12 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=11.4
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 2 ~~~C~~C~k~f~~~~ 16 (29)
T 2m0f_A 2 PLKCRECGKQFTTSG 16 (29)
T ss_dssp CEECTTTSCEESCHH
T ss_pred CccCCCCCCccCChh
Confidence 567999999876643
No 50
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=47.84 E-value=8.1 Score=16.11 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=11.3
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|..|..||+.....
T Consensus 3 ~~~C~~C~~~f~~~ 16 (30)
T 2m0d_A 3 PYQCDYCGRSFSDP 16 (30)
T ss_dssp CEECTTTCCEESCH
T ss_pred CccCCCCCcccCCH
Confidence 67899999988763
No 51
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.39 E-value=8.1 Score=17.25 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+.....+
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (36)
T 2elt_A 9 PYKCPQCSYASAIKA 23 (36)
T ss_dssp SEECSSSSCEESSHH
T ss_pred CCCCCCCCcccCCHH
Confidence 668999999887754
No 52
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.44 E-value=10 Score=16.90 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.5
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+....++.
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 5679999999877543
No 53
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=51.80 E-value=4.3 Score=17.01 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=10.5
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|-.|..||+..+..
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 56799999877653
No 54
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.84 E-value=8.7 Score=17.28 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=11.8
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (36)
T 2els_A 9 IFTCEYCNKVFKFKH 23 (36)
T ss_dssp CEECTTTCCEESSHH
T ss_pred CEECCCCCceeCCHH
Confidence 567999999987643
No 55
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.70 E-value=9.2 Score=17.19 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+.....+
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (36)
T 2elv_A 9 LYDCHICERKFKNEL 23 (36)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CeECCCCCCccCCHH
Confidence 667999999887754
No 56
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=45.30 E-value=11 Score=16.99 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 11 PFQCPDCDRSFSRSD 25 (37)
T ss_dssp SBCCTTTCCCBSSHH
T ss_pred CccCCCCCcccCcHH
Confidence 678999999887744
No 57
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=45.08 E-value=7.4 Score=22.17 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=8.1
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
..+||.||+.
T Consensus 23 ~~~C~~Cge~ 32 (56)
T 1u6p_A 23 RDQCAYCKEK 32 (56)
T ss_dssp TTBCSSSCCB
T ss_pred CCcceeCCCC
Confidence 4689999984
No 58
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=45.07 E-value=7.8 Score=23.64 Aligned_cols=13 Identities=38% Similarity=1.089 Sum_probs=10.5
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
.+.||+.|+|.++
T Consensus 24 ~~~RC~~C~kkvg 36 (74)
T 1wfp_A 24 TATRCLSCNKKVG 36 (74)
T ss_dssp CCCBCSSSCCBCT
T ss_pred cCccchhhcCccc
Confidence 4679999998865
No 59
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.76 E-value=7.3 Score=23.15 Aligned_cols=13 Identities=46% Similarity=0.984 Sum_probs=10.5
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
.+.||++|+|.++
T Consensus 14 ~~~rC~~C~kkvg 26 (64)
T 1wfh_A 14 RPNRCTVCRKRVG 26 (64)
T ss_dssp SCCCCTTTCCCCC
T ss_pred cCCcChhhCCccC
Confidence 4679999999765
No 60
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=44.25 E-value=7 Score=23.45 Aligned_cols=14 Identities=29% Similarity=0.954 Sum_probs=11.7
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+|+|-.||++++.
T Consensus 25 tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 25 TIVKCIICGRTVAE 38 (66)
T ss_dssp SCEECSSSCCEEEE
T ss_pred eEEEcccCCCEEee
Confidence 47899999999865
No 61
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=43.91 E-value=11 Score=16.94 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 2 p~~C~~C~k~F~~~~ 16 (33)
T 1rim_A 2 KFACPECPKRFMRSD 16 (33)
T ss_dssp CCCCSSSCCCCSSHH
T ss_pred cccCCCCCchhCCHH
Confidence 567999999987754
No 62
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.77 E-value=10 Score=16.67 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 7 ~~~C~~C~k~f~~~~ 21 (35)
T 2elx_A 7 GYVCALCLKKFVSSI 21 (35)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCcchhCCHH
Confidence 567999999887744
No 63
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=43.65 E-value=7.9 Score=19.49 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=5.6
Q ss_pred ccccCCCcc
Q 035172 5 VRCFTCGKV 13 (71)
Q Consensus 5 vRCfTCGkv 13 (71)
++||.||+.
T Consensus 1 ~~C~~Cg~~ 9 (37)
T 2bl6_A 1 QTCYNCGKP 9 (37)
T ss_dssp CCBSSSCCS
T ss_pred CcccccCCC
Confidence 357777753
No 64
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.48 E-value=8 Score=22.93 Aligned_cols=13 Identities=46% Similarity=1.078 Sum_probs=9.7
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
.+.||++|++.++
T Consensus 14 ~~~rC~~C~kkvg 26 (64)
T 1wg2_A 14 PNNRCFSCNKKVG 26 (64)
T ss_dssp CSCSCTTTCCCCT
T ss_pred cCCcChhhCCccc
Confidence 4678888888754
No 65
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=43.46 E-value=9.8 Score=17.56 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=12.7
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 6 ~~~C~~C~k~f~~~~~ 21 (39)
T 1njq_A 6 SYTCSFCKREFRSAQA 21 (39)
T ss_dssp SEECTTTCCEESSHHH
T ss_pred ceECCCCCcccCCHHH
Confidence 6689999999887543
No 66
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=42.80 E-value=6.5 Score=21.04 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=11.1
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
+.+|..||+.|..
T Consensus 9 ~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 9 QVPCEKCGSLVPV 21 (39)
T ss_dssp EEECTTTCCEEEG
T ss_pred CcccccccCcCCc
Confidence 4679999999986
No 67
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.65 E-value=10 Score=17.10 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=11.9
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|-.|..||+....+
T Consensus 9 ~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 9 AMKCPYCDFYFMKN 22 (37)
T ss_dssp CEECSSSSCEECSS
T ss_pred CeECCCCChhhccC
Confidence 66799999998876
No 68
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.55 E-value=9.5 Score=17.18 Aligned_cols=15 Identities=20% Similarity=0.466 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (37)
T 2elo_A 9 SYSCPVCEKSFSEDR 23 (37)
T ss_dssp CCEETTTTEECSSHH
T ss_pred CcCCCCCCCccCCHH
Confidence 667999999987743
No 69
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.50 E-value=7.8 Score=20.84 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=10.0
Q ss_pred cccccccCCCcccc
Q 035172 2 IIPVRCFTCGKVIG 15 (71)
Q Consensus 2 iiPvRCfTCGkvi~ 15 (71)
++..+|..||++|.
T Consensus 3 ~~~~~C~~C~~~I~ 16 (66)
T 1nyp_A 3 MGVPICGACRRPIE 16 (66)
T ss_dssp CCCCEETTTTEECC
T ss_pred cCCCCCcccCCEec
Confidence 34567888888875
No 70
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=42.44 E-value=9.8 Score=18.71 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=9.9
Q ss_pred cccccCCCcccc
Q 035172 4 PVRCFTCGKVIG 15 (71)
Q Consensus 4 PvRCfTCGkvi~ 15 (71)
+-+|..|||.+=
T Consensus 3 ~~~C~~C~k~Vy 14 (31)
T 1zfo_A 3 NPNCARCGKIVY 14 (31)
T ss_dssp CCBCSSSCSBCC
T ss_pred CCcCCccCCEEe
Confidence 458999999984
No 71
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=41.65 E-value=7.5 Score=25.72 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=11.3
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
=||+|..||+.+--
T Consensus 19 ~~V~C~nCgr~vPK 32 (119)
T 2xzm_5 19 RTVPCTNCGRQVAK 32 (119)
T ss_dssp CEEECTTTCCEEET
T ss_pred ccEeeCCccccCcc
Confidence 38999999987753
No 72
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=41.26 E-value=9 Score=22.52 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=9.1
Q ss_pred cccccCCCccc
Q 035172 4 PVRCFTCGKVI 14 (71)
Q Consensus 4 PvRCfTCGkvi 14 (71)
||||.-||.-|
T Consensus 38 ~iRC~~CG~RI 48 (63)
T 3h0g_L 38 VIRCRECGHRV 48 (63)
T ss_dssp CCCCSSSCCCC
T ss_pred ceECCCCCcEE
Confidence 68999999766
No 73
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.11 E-value=12 Score=16.83 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=12.6
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elq_A 9 PFKCSLCEYATRSKSN 24 (36)
T ss_dssp SEECSSSSCEESCHHH
T ss_pred CccCCCCCchhCCHHH
Confidence 6679999999887543
No 74
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=41.07 E-value=7.4 Score=24.87 Aligned_cols=11 Identities=36% Similarity=0.773 Sum_probs=9.3
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
.|-.|||||+=
T Consensus 77 vCn~CGkPI~l 87 (96)
T 3mhs_E 77 VCEKCGKPLAL 87 (96)
T ss_dssp EETTTCCEECG
T ss_pred hhhccCCceeH
Confidence 49999999963
No 75
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=41.05 E-value=8.3 Score=17.23 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.1
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
|-.|..||+..+.
T Consensus 2 p~~C~~C~k~f~~ 14 (32)
T 2kfq_A 2 AFACPACPKRFMR 14 (32)
T ss_dssp CSSSSSSCTTHHH
T ss_pred CCCCCCCCcccCC
Confidence 5679999987654
No 76
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Probab=40.90 E-value=17 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.756 Sum_probs=17.0
Q ss_pred cccccCCCccccchHHHHHHHH
Q 035172 4 PVRCFTCGKVIGNKWDTYLDLL 25 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e~y~~~v 25 (71)
|.+|.-||+..+|+..+-++-+
T Consensus 169 ~L~C~~C~~~f~n~~~~LK~HL 190 (204)
T 3sp4_A 169 DLKCWRCGETFGRHFTKLKAHL 190 (204)
T ss_dssp CCBCTTTCCBCTTCHHHHHHHH
T ss_pred CceeCCCCchhhcccHHHHHHH
Confidence 8999999999999555544444
No 77
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.43 E-value=12 Score=20.95 Aligned_cols=13 Identities=31% Similarity=0.830 Sum_probs=10.1
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
+..+|..||++|.
T Consensus 14 ~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 14 FANTCAECQQLIG 26 (82)
T ss_dssp CSCBCTTTCCBCC
T ss_pred cCCcCccCCCccc
Confidence 4568888998886
No 78
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.32 E-value=10 Score=21.30 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=6.6
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
+.+||.||+.
T Consensus 7 ~~~C~~Cg~~ 16 (63)
T 2cqf_A 7 GDRCYNCGGL 16 (63)
T ss_dssp CCCCSSSCCS
T ss_pred CCcccccCCC
Confidence 4567777763
No 79
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=38.00 E-value=10 Score=22.33 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=7.2
Q ss_pred cccccCCCcc
Q 035172 4 PVRCFTCGKV 13 (71)
Q Consensus 4 PvRCfTCGkv 13 (71)
+++||.||+.
T Consensus 24 ~~~C~~Cg~~ 33 (74)
T 2li8_A 24 GDRCYNCGGL 33 (74)
T ss_dssp TSCCTTTCCS
T ss_pred CCcccccCCc
Confidence 4678888874
No 80
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.99 E-value=12 Score=20.63 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=10.0
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
+..+|..||++|..
T Consensus 14 ~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 14 VAKKCAGCKNPITG 27 (77)
T ss_dssp CCCCCSSSCCCCCC
T ss_pred hCccCcccCCcccC
Confidence 34578888888864
No 81
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.92 E-value=13 Score=17.46 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (44)
T 2emb_A 12 RYECSKCQATFNLRK 26 (44)
T ss_dssp SEECTTTCCEESCHH
T ss_pred CeECCCCCCccCCHH
Confidence 567999999987744
No 82
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.15 E-value=13 Score=20.77 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.2
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
+..+|..|+++|.
T Consensus 14 ~~~~C~~C~~~I~ 26 (81)
T 1x6a_A 14 FGEFCHGCSLLMT 26 (81)
T ss_dssp SSCBCTTTCCBCC
T ss_pred cCCcCccCCCCcC
Confidence 4567888998887
No 83
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=36.69 E-value=9.9 Score=25.10 Aligned_cols=14 Identities=50% Similarity=1.023 Sum_probs=11.2
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
=||||..||+-+--
T Consensus 19 ~~V~C~nCgr~vPK 32 (119)
T 3u5c_a 19 KPVRCVNCSKSIPK 32 (119)
T ss_dssp CEEECTTTCCEEEG
T ss_pred ccEeeccccccccc
Confidence 38999999987643
No 84
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.57 E-value=16 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHhcCCcchhhhhHH
Q 035172 34 ALDALGLVRYCCRRML 49 (71)
Q Consensus 34 vLd~Lg~~ryCCRrml 49 (71)
++.++|+.|+|-|.|-
T Consensus 72 ~~r~fglsR~~fRe~a 87 (100)
T 3bbn_N 72 NIRDFGLSGHILREMV 87 (100)
T ss_dssp BCTTTCSBTTHHHHHH
T ss_pred eecccCcHHHHHHHHH
Confidence 4556778888877653
No 85
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.13 E-value=11 Score=20.41 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=6.9
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
.+|..||++|.
T Consensus 3 ~~C~~C~~~I~ 13 (65)
T 2iyb_E 3 VVCQGCHNAID 13 (65)
T ss_dssp EECTTTSSEEC
T ss_pred CCCcCCCCeec
Confidence 35666666665
No 86
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=36.00 E-value=16 Score=16.10 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 7 ~~~C~~C~k~f~~~~ 21 (35)
T 1srk_A 7 PFVCRICLSAFTTKA 21 (35)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CeeCCCCCcccCCHH
Confidence 567999999987744
No 87
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.91 E-value=24 Score=20.28 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=9.7
Q ss_pred ccccccC--CCcc
Q 035172 3 IPVRCFT--CGKV 13 (71)
Q Consensus 3 iPvRCfT--CGkv 13 (71)
.|++|+. |...
T Consensus 49 ~~i~CP~~~C~~~ 61 (94)
T 1wim_A 49 TAISCPDAACPKQ 61 (94)
T ss_dssp CCEECSCTTCSSC
T ss_pred ccccCccccCCCC
Confidence 5789999 9998
No 88
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.82 E-value=16 Score=19.77 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=9.0
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
+..+|..||++|.
T Consensus 4 ~~~~C~~C~~~I~ 16 (72)
T 1wyh_A 4 GSSGCSACGETVM 16 (72)
T ss_dssp CCCBCSSSCCBCC
T ss_pred cCCCCccCCCccc
Confidence 4456777777776
No 89
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.61 E-value=13 Score=23.04 Aligned_cols=12 Identities=50% Similarity=1.090 Sum_probs=9.9
Q ss_pred cccccCCCcccc
Q 035172 4 PVRCFTCGKVIG 15 (71)
Q Consensus 4 PvRCfTCGkvi~ 15 (71)
+-||+.|+|-++
T Consensus 25 ~~rC~~C~kkvg 36 (85)
T 1wff_A 25 MKHCFLCGKKTG 36 (85)
T ss_dssp CCBCSSSCCBCS
T ss_pred CccchhhCCeec
Confidence 468999999776
No 90
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.50 E-value=12 Score=22.23 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=10.9
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+|.|-.||.+++.
T Consensus 33 t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 33 TKVRCLICGATLVE 46 (63)
T ss_dssp SCEECSSSCCEEEE
T ss_pred eEEEccCcCCEEec
Confidence 46888899988865
No 91
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.48 E-value=18 Score=16.62 Aligned_cols=15 Identities=47% Similarity=0.908 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2ytb_A 11 PYRCDQCGKAFSQKG 25 (42)
T ss_dssp SBCCTTTTCCBSSHH
T ss_pred CeeCCCccchhCCHH
Confidence 667999999887743
No 92
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=35.31 E-value=36 Score=21.92 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=25.0
Q ss_pred HHHhcCCcchhhhhHHHHhHHHHHHHhcc
Q 035172 34 ALDALGLVRYCCRRMLMTHVDLIEKLLNY 62 (71)
Q Consensus 34 vLd~Lg~~ryCCRrmllthvdlid~ll~y 62 (71)
-|.+||++..--|+.++..|....+|-..
T Consensus 116 dL~~lGI~~~gHr~kIl~ai~~l~~~~~~ 144 (149)
T 3sei_A 116 DLQEIGITKLGHQKKLMLAVRKLAELRRH 144 (149)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999988887543
No 93
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=35.11 E-value=23 Score=21.76 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCccccchHHHHHHHHHccCChhhHHHhcCC
Q 035172 9 TCGKVIGNKWDTYLDLLQADYPEGDALDALGL 40 (71)
Q Consensus 9 TCGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~ 40 (71)
.|-+.+..+-....+.++++.+|+++=..||+
T Consensus 66 ~C~~~V~~y~~~II~~L~~~~~P~~VC~~L~l 97 (99)
T 2js9_A 66 ECDHYVNSKVDPIIHELEGGTAPKDVCTKLNE 97 (99)
T ss_dssp HHHTTTTTTHHHHHHHHHHTCCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhhcCC
Confidence 47778888888899999999999999888875
No 94
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.05 E-value=13 Score=20.53 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=10.2
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
+..+|..||++|..
T Consensus 4 ~~~~C~~C~~~I~~ 17 (76)
T 1x68_A 4 GSSGCVACSKPISG 17 (76)
T ss_dssp CCCCCTTTCCCCCT
T ss_pred cCCCCccCCCcccC
Confidence 45678888888864
No 95
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.62 E-value=14 Score=20.47 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=10.1
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
+-.+|..||++|..
T Consensus 4 ~~~~C~~C~~~I~~ 17 (73)
T 1wig_A 4 GSSGCDSCEKYITG 17 (73)
T ss_dssp SCCSCSSSCCCCSS
T ss_pred CcCCcccCCCEecC
Confidence 34578888888865
No 96
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=34.50 E-value=13 Score=21.95 Aligned_cols=9 Identities=56% Similarity=1.305 Sum_probs=7.7
Q ss_pred cccccCCCc
Q 035172 4 PVRCFTCGK 12 (71)
Q Consensus 4 PvRCfTCGk 12 (71)
+|||.-||.
T Consensus 45 ~irCp~CG~ 53 (70)
T 1twf_L 45 AVRCKDCGH 53 (70)
T ss_dssp TTCCSSSCC
T ss_pred CccCCCCCc
Confidence 678999998
No 97
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.45 E-value=17 Score=17.10 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=12.8
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+..+.+..
T Consensus 10 ~~~C~~C~k~f~~~~~ 25 (44)
T 2emx_A 10 PFGCSCCEKAFSSKSY 25 (44)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 6689999999887543
No 98
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.44 E-value=20 Score=16.49 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 10 ~~~C~~C~k~f~~~~ 24 (42)
T 2yte_A 10 PYSCAECKETFSDNN 24 (42)
T ss_dssp SCBCTTTCCBCSSHH
T ss_pred CeECCCCCCccCCHH
Confidence 668999999887744
No 99
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.35 E-value=21 Score=16.56 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2eos_A 11 PYPCEICGTRFRHLQ 25 (42)
T ss_dssp CBCCSSSCCCBSSHH
T ss_pred CEECCCCCCccCCHH
Confidence 668999999987744
No 100
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=34.32 E-value=17 Score=16.69 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2epc_A 11 PYLCGQCGKSFTQRG 25 (42)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CeECCCCCcccCCHH
Confidence 567999999987754
No 101
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.09 E-value=18 Score=16.72 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 10 ~~~C~~C~k~f~~~~ 24 (41)
T 2ept_A 10 VYECQECGKSFRQKG 24 (41)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CeECCCCCCCcCCHH
Confidence 667999999987743
No 102
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.08 E-value=17 Score=16.93 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=12.7
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+.......
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (44)
T 2eof_A 12 PYECNECQKAFNTKSN 27 (44)
T ss_dssp SEECTTTCCEESCHHH
T ss_pred CeECCCCCcccCCHhH
Confidence 5679999999887544
No 103
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=34.06 E-value=39 Score=20.94 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=25.0
Q ss_pred ccccCCCccccchHHHHHHHHH-ccCChhhHHHhcCCc
Q 035172 5 VRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLV 41 (71)
Q Consensus 5 vRCfTCGkvi~~~~e~y~~~v~-~~~~~~~vLd~Lg~~ 41 (71)
|.|+-|||.....= + -+-. -|.+|++--...|+.
T Consensus 22 iiClecGK~fK~Lk-R--HL~~~hgltpeeYR~kwGlp 56 (87)
T 2jsp_A 22 IVCLECGGSFKSLK-R--HLTTHHSMTPEEYREKWDLP 56 (87)
T ss_dssp EECTBTCCEESBHH-H--HHHHTTCSCHHHHHHHTTCG
T ss_pred eEecccchhhHHHH-H--HHHHccCCCHHHHHHHhCCC
Confidence 57999999887632 2 2223 489999988888875
No 104
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=33.86 E-value=27 Score=25.64 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=15.7
Q ss_pred cccCCCccccchHHHHHHHHHccCChhhHHHh
Q 035172 6 RCFTCGKVIGNKWDTYLDLLQADYPEGDALDA 37 (71)
Q Consensus 6 RCfTCGkvi~~~~e~y~~~v~~~~~~~~vLd~ 37 (71)
.||+||+ +-..-.|...+ +|.+-.+|+..
T Consensus 57 ~CFgCg~--gGd~i~fv~~~-~~~sf~eAv~~ 85 (407)
T 2au3_A 57 KCFGCGV--GGDAIKFVSLY-EDISYFEAALE 85 (407)
T ss_dssp EETTTCC--EECHHHHHHHH-HTCCHHHHHHH
T ss_pred EECCCCC--CCCHHHHHHHH-hCCCHHHHHHH
Confidence 5999994 33334444444 44554454443
No 105
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=33.81 E-value=12 Score=22.32 Aligned_cols=10 Identities=50% Similarity=1.135 Sum_probs=4.9
Q ss_pred ccccccCCCcc
Q 035172 3 IPVRCFTCGKV 13 (71)
Q Consensus 3 iPvRCfTCGkv 13 (71)
+-|||. ||+.
T Consensus 3 ~vv~C~-C~~~ 12 (71)
T 1gh9_A 3 IIFRCD-CGRA 12 (71)
T ss_dssp EEEEET-TSCC
T ss_pred EEEECC-CCCE
Confidence 345555 5544
No 106
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.47 E-value=18 Score=17.10 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (44)
T 2epv_A 12 PYECNECGKAFIWKSL 27 (44)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CeECCCCCcccCchHH
Confidence 5679999999877543
No 107
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.23 E-value=18 Score=17.19 Aligned_cols=15 Identities=40% Similarity=0.910 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em4_A 12 PYECIECGKAFKTKS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CcCCCCCCCccCCHH
Confidence 567999999988754
No 108
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.79 E-value=18 Score=16.69 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 11 ~~~C~~C~k~f~~~~ 25 (42)
T 2en2_A 11 PYKCETCGARFVQVA 25 (42)
T ss_dssp SEECTTTCCEESSHH
T ss_pred CEeCCCcChhhCCHH
Confidence 567999999987744
No 109
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.72 E-value=19 Score=16.99 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=12.7
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2ytf_A 12 PFECSECQKAFNTKSN 27 (46)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CcCCCCCCcccCCHHH
Confidence 6679999999887544
No 110
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=32.67 E-value=17 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHccCChhhHHHhcCCcch
Q 035172 21 YLDLLQADYPEGDALDALGLVRY 43 (71)
Q Consensus 21 y~~~v~~~~~~~~vLd~Lg~~ry 43 (71)
--.+++.|++..+|+.+|++.|+
T Consensus 11 Ia~L~smGfsr~da~~AL~ia~N 33 (56)
T 2juj_A 11 IENLMSQGYSYQDIQKALVIAQN 33 (56)
T ss_dssp HHHHHTTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHhcc
Confidence 34566789999999999988764
No 111
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=32.64 E-value=15 Score=22.85 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=11.1
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+|.|-.||.+++.
T Consensus 52 t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 52 TAVTCESCSTILCT 65 (82)
T ss_dssp SCCCCSSSCCCCEE
T ss_pred eEEEccccCCEEec
Confidence 46889999988865
No 112
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=32.38 E-value=14 Score=18.90 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.9
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
+|..||++|.-
T Consensus 8 ~C~~CGnivev 18 (36)
T 1dxg_A 8 KCELCGQVVKV 18 (36)
T ss_dssp ECTTTCCEEEE
T ss_pred EcCCCCcEEEE
Confidence 69999998853
No 113
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=32.37 E-value=46 Score=19.90 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=21.8
Q ss_pred hHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHHHHHhc
Q 035172 17 KWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61 (71)
Q Consensus 17 ~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~ 61 (71)
||+++..+ .|.++.+|.. .+|+++++|.+
T Consensus 57 Kw~AW~~l--~gms~eeA~~--------------~YI~~v~~l~~ 85 (89)
T 1hbk_A 57 KYEAWKSV--ENLNREDAQK--------------RYVDIVSEIFP 85 (89)
T ss_dssp HHHHHHHT--TTCCHHHHHH--------------HHHHHHHHHCT
T ss_pred HHHHHHHh--cCCCHHHHHH--------------HHHHHHHHHcc
Confidence 78888775 7888888876 45777777764
No 114
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.21 E-value=23 Score=16.87 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eon_A 12 PYKCQVCGKAFRVSS 26 (46)
T ss_dssp SCBCSSSCCBCSSHH
T ss_pred ccCCCCCCcccCcHH
Confidence 668999999987743
No 115
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.10 E-value=19 Score=16.96 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=12.7
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+..+.+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eow_A 12 PYKCNECGKAFRARSS 27 (46)
T ss_dssp CEECTTSCCEESSHHH
T ss_pred CeeccccCChhcCHHH
Confidence 6689999999887544
No 116
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.03 E-value=23 Score=16.70 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2enf_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SCBCSSSCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 568999999987744
No 117
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=31.75 E-value=15 Score=21.27 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCccccchHHHHHHHHHccCChhhHHHhcCC
Q 035172 9 TCGKVIGNKWDTYLDLLQADYPEGDALDALGL 40 (71)
Q Consensus 9 TCGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~ 40 (71)
.|...+..+-....+.+.++.+|.++=..||+
T Consensus 49 ~C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~l 80 (91)
T 2qyp_A 49 ECQEVVDTYGSSILSILLEEVSPELVCSMLHL 80 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHTCCHHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHHHHcCCHHHHHhhcCC
Confidence 36666766667777888889999999888886
No 118
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.52 E-value=19 Score=16.38 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 9 ~~~C~~C~k~f~~~~ 23 (37)
T 2elm_A 9 LYYCSQCHYSSITKN 23 (37)
T ss_dssp EEECSSSSCEEECHH
T ss_pred CeECCCCCcccCCHH
Confidence 667999999887744
No 119
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.47 E-value=20 Score=17.00 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=12.6
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+....
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2eoo_A 12 PYGCNECGKNFGRHSH 27 (46)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CEEccccCcccCCHHH
Confidence 6679999999887543
No 120
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=31.18 E-value=16 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCccccchHHHHHHHHHccCChhhHHHhcCC
Q 035172 10 CGKVIGNKWDTYLDLLQADYPEGDALDALGL 40 (71)
Q Consensus 10 CGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~ 40 (71)
|-+.+..+-....+.+.++++|..+=..||+
T Consensus 46 C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~l 76 (77)
T 1of9_A 46 CTKVLDFGIDKLIQLIEDKVDANAICAKIHA 76 (77)
T ss_dssp HHHHHHHCHHHHHHHHHHTCCHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhcCC
Confidence 5566666667777888889999998887775
No 121
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.15 E-value=21 Score=16.90 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=12.9
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+.......
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2enc_A 12 PFKCEECGKGFYTNSQ 27 (46)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CcCCCCCCCcCCChHH
Confidence 6789999999887554
No 122
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.97 E-value=21 Score=16.88 Aligned_cols=16 Identities=38% Similarity=0.945 Sum_probs=12.5
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2ep3_A 12 PYRCAECGKAFTDRSN 27 (46)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CeECCCCCchhCCHHH
Confidence 5679999999887543
No 123
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.91 E-value=22 Score=16.67 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+....++
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (44)
T 2eou_A 12 TSECQECGKIFRHSS 26 (44)
T ss_dssp CCCCTTTCCCCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 567999999988754
No 124
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=30.75 E-value=17 Score=18.77 Aligned_cols=9 Identities=56% Similarity=1.062 Sum_probs=6.4
Q ss_pred ccccCCCcc
Q 035172 5 VRCFTCGKV 13 (71)
Q Consensus 5 vRCfTCGkv 13 (71)
|-|.+||.+
T Consensus 1 VlC~~C~~p 9 (36)
T 1k81_A 1 VICRECGKP 9 (36)
T ss_dssp CCCSSSCSC
T ss_pred CCCcCCCCC
Confidence 457888765
No 125
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.75 E-value=21 Score=16.85 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2emi_A 12 HYECSECGKAFIQKST 27 (46)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CCCCCCCCcccCCHHH
Confidence 5679999999887543
No 126
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.66 E-value=23 Score=16.70 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2yti_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp TTCCSSSCCCCSSHH
T ss_pred CeECCCCCcccCChh
Confidence 567999999987744
No 127
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=30.62 E-value=20 Score=20.56 Aligned_cols=31 Identities=6% Similarity=-0.008 Sum_probs=23.7
Q ss_pred CCccccchHHHHHHHHHccCChhhHHHhcCC
Q 035172 10 CGKVIGNKWDTYLDLLQADYPEGDALDALGL 40 (71)
Q Consensus 10 CGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~ 40 (71)
|-+.+..+-....+.+.++.+|+++=..||+
T Consensus 45 C~~~V~~y~~~iI~~l~~~~~P~~IC~~l~l 75 (78)
T 1nkl_A 45 CKKIMRSFLRRISWDILTGKKPQAICVDIKI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHhccCC
Confidence 5556666666777788889999999888875
No 128
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.59 E-value=18 Score=19.92 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=9.7
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+.+|..|+++|..
T Consensus 8 ~~~~C~~C~~~I~~ 21 (76)
T 2cu8_A 8 MASKCPKCDKTVYF 21 (76)
T ss_dssp CCCBCTTTCCBCCT
T ss_pred CCCCCcCCCCEeEC
Confidence 34578888888763
No 129
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.55 E-value=23 Score=16.42 Aligned_cols=15 Identities=40% Similarity=0.778 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (44)
T 2en7_A 12 PYVCNECGKAFRSKS 26 (44)
T ss_dssp SSCCTTTCCCCSSHH
T ss_pred CeECCCCCCccCCHH
Confidence 567999999987743
No 130
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.53 E-value=20 Score=19.01 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=7.6
Q ss_pred cccccCCCcccc
Q 035172 4 PVRCFTCGKVIG 15 (71)
Q Consensus 4 PvRCfTCGkvi~ 15 (71)
..+|..||++|.
T Consensus 11 ~~~C~~C~~~i~ 22 (72)
T 3f6q_B 11 SATCERCKGGFA 22 (72)
T ss_dssp TCBCTTTCCBCC
T ss_pred CccchhcCcccc
Confidence 346777777665
No 131
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.50 E-value=19 Score=19.46 Aligned_cols=11 Identities=36% Similarity=0.939 Sum_probs=8.7
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
+|.+|++++++
T Consensus 33 ~C~~C~~~L~~ 43 (70)
T 2d8x_A 33 RCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCSS
T ss_pred EeCCCCCcCCC
Confidence 67778888876
No 132
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=30.41 E-value=22 Score=16.38 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 10 ~~~C~~C~k~f~~~~~ 25 (42)
T 2el5_A 10 PYECSECGKAFNRKDQ 25 (42)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 5679999999877543
No 133
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.36 E-value=22 Score=16.88 Aligned_cols=15 Identities=40% Similarity=0.875 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2yto_A 12 PYKCSDCGKAFTRKS 26 (46)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CEECcccCCccCCHh
Confidence 668999999987744
No 134
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.33 E-value=21 Score=16.81 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eor_A 12 PYNCEECGKAFIHDS 26 (46)
T ss_dssp SEECTTTCCEESSHH
T ss_pred CccCCCCCCCcCCHH
Confidence 567999999987744
No 135
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.16 E-value=24 Score=16.63 Aligned_cols=16 Identities=31% Similarity=0.742 Sum_probs=12.8
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSR 27 (46)
T ss_dssp SCCCSSSCCCCSSHHH
T ss_pred CcCCCcCCchhCCHHH
Confidence 6679999999887554
No 136
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=30.13 E-value=22 Score=16.72 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em9_A 12 PYNCKECGKSFRWAS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCccccccCChH
Confidence 667999999987743
No 137
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.08 E-value=26 Score=16.57 Aligned_cols=15 Identities=33% Similarity=0.817 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2elz_A 12 PYKCEDCGKGYNRRL 26 (46)
T ss_dssp SCBCSSSCCBCSSHH
T ss_pred CeeCcccCchhCCHH
Confidence 678999999987743
No 138
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.06 E-value=24 Score=16.81 Aligned_cols=15 Identities=40% Similarity=1.130 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytm_A 12 PYKCMECGKAFGDNS 26 (46)
T ss_dssp SSSBTTTTBCCSSHH
T ss_pred CcCCCCCCchhCCHH
Confidence 667999999988754
No 139
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.93 E-value=19 Score=20.05 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=9.7
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
+-.+|..||++|..
T Consensus 14 ~~~~C~~C~~~I~~ 27 (81)
T 1v6g_A 14 YGTRCFSCDQFIEG 27 (81)
T ss_dssp CCCBCTTTCCBCCS
T ss_pred hCCcCccccCEecc
Confidence 34578888888863
No 140
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.91 E-value=22 Score=16.69 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2yts_A 12 PYICNECGKSFIQKS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CEECCCCChhhCChH
Confidence 667999999987743
No 141
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.86 E-value=27 Score=16.40 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eov_A 12 PYKCSDCGKSFTWKS 26 (46)
T ss_dssp SCBCSSSCCBCSSHH
T ss_pred CccCCccChhhCCHH
Confidence 678999999987754
No 142
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.61 E-value=27 Score=16.52 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2yth_A 12 PFQCEECGKRFTQNSH 27 (46)
T ss_dssp SBCCSSSCCCBSSHHH
T ss_pred CCCCCCCCcccCCHHH
Confidence 5679999999877443
No 143
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.61 E-value=19 Score=16.89 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (44)
T 2eox_A 12 SYNCNECGKAFTRIF 26 (44)
T ss_dssp CEEETTTTEEESSSH
T ss_pred CeECcccCcccCCHH
Confidence 567999999887754
No 144
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=29.56 E-value=22 Score=17.72 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 24 ~~~C~~C~k~f~~~~~ 39 (54)
T 1yui_A 24 PATCPICYAVIRQSRN 39 (54)
T ss_dssp CEECTTTCCEESSHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 5679999999877543
No 145
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.53 E-value=27 Score=16.50 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em6_A 12 CYKCDVCGKEFSQSS 26 (46)
T ss_dssp CCBCSSSCCBCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 668999999987743
No 146
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=29.48 E-value=17 Score=22.55 Aligned_cols=14 Identities=14% Similarity=0.546 Sum_probs=11.0
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+|.|-.||.+++.
T Consensus 50 t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 50 STIICEKCSAILCK 63 (81)
T ss_dssp SCEECSSSCCEEEE
T ss_pred cEEEccCCCCEEee
Confidence 46889999988764
No 147
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.47 E-value=19 Score=19.56 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=9.2
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
..+|..||++|..
T Consensus 5 ~~~C~~C~~~I~~ 17 (72)
T 1x4l_A 5 SSGCAGCTNPISG 17 (72)
T ss_dssp SCSBTTTTBCCCC
T ss_pred CCCCcCCCccccC
Confidence 4568888887764
No 148
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.39 E-value=23 Score=16.71 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em7_A 12 PYKCEECGKGFICRR 26 (46)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCccchhCCHH
Confidence 567999999987744
No 149
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.35 E-value=19 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=10.9
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+|.|-.||.+++.
T Consensus 54 t~V~C~~CgtvL~~ 67 (86)
T 3iz6_X 54 TVVVCPGCQTVLCQ 67 (86)
T ss_dssp SCCCCSSSCCCCSC
T ss_pred cEEEccCCCCEeec
Confidence 46888889888865
No 150
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.34 E-value=22 Score=19.68 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=9.0
Q ss_pred ccccccCCCcccc
Q 035172 3 IPVRCFTCGKVIG 15 (71)
Q Consensus 3 iPvRCfTCGkvi~ 15 (71)
+..+|..||++|.
T Consensus 14 ~~~~C~~C~~~I~ 26 (82)
T 1x63_A 14 DSPKCKGCFKAIV 26 (82)
T ss_dssp CSCBCSSSCCBCC
T ss_pred cCCcCccCCcccc
Confidence 3457777887775
No 151
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=29.33 E-value=26 Score=17.12 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=11.5
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 1 p~~C~~C~~~f~~~~ 15 (57)
T 1bbo_A 1 KYICEECGIRXKKPS 15 (57)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CCcCCCCcCcCCCHH
Confidence 567899999887744
No 152
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.32 E-value=26 Score=16.48 Aligned_cols=14 Identities=50% Similarity=1.020 Sum_probs=11.5
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|..|..||+....+
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2emg_A 12 PFICSECGKVFTHK 25 (46)
T ss_dssp SCBCTTTCCBCSSH
T ss_pred CEECCccCcccCCH
Confidence 56799999998774
No 153
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=29.27 E-value=19 Score=19.88 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=21.9
Q ss_pred CCccccchHHHHHHHHHccCChhhHHHhcCC
Q 035172 10 CGKVIGNKWDTYLDLLQADYPEGDALDALGL 40 (71)
Q Consensus 10 CGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~ 40 (71)
|...+..+-....+.+.++.+|.++=..||+
T Consensus 47 C~~~v~~y~~~ii~~l~~~~~P~~iC~~l~~ 77 (80)
T 3bqp_A 47 CDQFVAEYEPVLIEILVEVMDPSFVCLKIGA 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHCCCHHHHHhhcCC
Confidence 4455555556677777788889888877764
No 154
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.25 E-value=26 Score=16.58 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2enh_A 12 PYECDVCRKAFSHHA 26 (46)
T ss_dssp SCBCTTTCCBCSSSH
T ss_pred CcCCCCcCchhCCHH
Confidence 668999999987754
No 155
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.15 E-value=24 Score=16.60 Aligned_cols=15 Identities=47% Similarity=0.902 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2yrj_A 12 PYRCGECGKAFAQKA 26 (46)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CeECCCCCCccCCHH
Confidence 668999999987743
No 156
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.05 E-value=20 Score=19.40 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=7.9
Q ss_pred cccccCCCcccc
Q 035172 4 PVRCFTCGKVIG 15 (71)
Q Consensus 4 PvRCfTCGkvi~ 15 (71)
..+|..||++|.
T Consensus 5 ~~~C~~C~~~I~ 16 (72)
T 1x61_A 5 SSGCGGCGEDVV 16 (72)
T ss_dssp CCCCSSSCSCCC
T ss_pred CCCCccCCCccC
Confidence 346777777665
No 157
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.95 E-value=23 Score=16.56 Aligned_cols=16 Identities=25% Similarity=0.704 Sum_probs=12.6
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+....+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (44)
T 2yu5_A 12 PFKCSKCDRVFTQRNY 27 (44)
T ss_dssp SEECSSSSCEESSSHH
T ss_pred CeECCCCCchhCCHHH
Confidence 6679999999887543
No 158
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.90 E-value=21 Score=16.65 Aligned_cols=15 Identities=47% Similarity=0.931 Sum_probs=11.8
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (44)
T 2eoj_A 12 PYECCECGKVFSRKD 26 (44)
T ss_dssp SCEETTTTEECSSHH
T ss_pred CeeCCCCCCccCCHH
Confidence 667999999887743
No 159
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.89 E-value=50 Score=16.68 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=21.6
Q ss_pred chHHHHHHHHHccCChhhHHHhcCCcchh
Q 035172 16 NKWDTYLDLLQADYPEGDALDALGLVRYC 44 (71)
Q Consensus 16 ~~~e~y~~~v~~~~~~~~vLd~Lg~~ryC 44 (71)
+.|++-..+..+|.+..++-+.||+.+-=
T Consensus 19 ~~~~~i~~l~~~g~s~~eIA~~lgis~~T 47 (55)
T 2x48_A 19 DLVSVAHELAKMGYTVQQIANALGVSERK 47 (55)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHH
Confidence 34555555667899999999999997643
No 160
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=28.87 E-value=21 Score=20.02 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHccCChhhHHHhcCCcch
Q 035172 21 YLDLLQADYPEGDALDALGLVRY 43 (71)
Q Consensus 21 y~~~v~~~~~~~~vLd~Lg~~ry 43 (71)
-..++..|++..+|..+|++.|.
T Consensus 8 I~~L~s~Gf~~~~~~rAL~ia~N 30 (46)
T 2oo9_A 8 IENLMSQGYSYQDIQKALVIAQN 30 (46)
T ss_dssp HHHHHHTTBCHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHhhc
Confidence 34567899999999999987664
No 161
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.87 E-value=54 Score=15.65 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=21.1
Q ss_pred hHHHHHHHHHccCChhhHHHhcCCcchh
Q 035172 17 KWDTYLDLLQADYPEGDALDALGLVRYC 44 (71)
Q Consensus 17 ~~e~y~~~v~~~~~~~~vLd~Lg~~ryC 44 (71)
.++.-..++.+|.+..++-..||+.+--
T Consensus 10 ~~~~i~~l~~~g~s~~~ia~~lgvs~~T 37 (52)
T 1jko_C 10 EQEQISRLLEKGHPRQQLAIIFGIGVST 37 (52)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHH
Confidence 4555566677889999999999987543
No 162
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.82 E-value=26 Score=16.51 Aligned_cols=15 Identities=33% Similarity=0.813 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eq2_A 12 PYQCNECGKAFSQTS 26 (46)
T ss_dssp SSSCCSSCCCCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 567999999987743
No 163
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.73 E-value=22 Score=19.12 Aligned_cols=13 Identities=31% Similarity=0.647 Sum_probs=8.6
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
..+|..|+++|..
T Consensus 5 ~~~C~~C~~~I~~ 17 (70)
T 2d8z_A 5 SSGCVQCKKPITT 17 (70)
T ss_dssp CCBCSSSCCBCCS
T ss_pred CCCCcccCCeecc
Confidence 4567777777754
No 164
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.71 E-value=23 Score=16.71 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2emh_A 12 PYICTVCGKAFTDRS 26 (46)
T ss_dssp SEECTTTCCEESSHH
T ss_pred CcCCCCCCchhCCHH
Confidence 567999999988754
No 165
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.70 E-value=21 Score=16.81 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eq3_A 12 PYECNQCGKAFSVRS 26 (46)
T ss_dssp SSEETTTTEECSSHH
T ss_pred CeECCCCChhhCCHH
Confidence 678999999987743
No 166
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.63 E-value=24 Score=16.63 Aligned_cols=15 Identities=40% Similarity=0.908 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ene_A 12 PYKCNECGKVFRHNS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCCchhCChH
Confidence 667999999987744
No 167
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.61 E-value=23 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=10.6
Q ss_pred ccccccCCCccccc
Q 035172 3 IPVRCFTCGKVIGN 16 (71)
Q Consensus 3 iPvRCfTCGkvi~~ 16 (71)
.+-+|..||++|..
T Consensus 60 ~~~~C~~C~~~I~~ 73 (123)
T 2l4z_A 60 SWKRCAGCGGKIAD 73 (123)
T ss_dssp SCSBBSSSSSBCCS
T ss_pred cCCcCcCCCCCcCC
Confidence 34578899988875
No 168
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.61 E-value=28 Score=16.47 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2en9_A 12 LFKCNECKKTFTQSS 26 (46)
T ss_dssp CCBCTTTCCBCSSHH
T ss_pred CEECCccCcccCCHH
Confidence 567999999987744
No 169
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.59 E-value=27 Score=16.40 Aligned_cols=15 Identities=40% Similarity=0.735 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ep1_A 12 PYECSDCGKSFIKKS 26 (46)
T ss_dssp SSCCSSSCCCCSSHH
T ss_pred CcCCCCCCchhCCHH
Confidence 567999999987744
No 170
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.57 E-value=28 Score=16.33 Aligned_cols=15 Identities=33% Similarity=0.673 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eop_A 12 PHECRECGKSFSFNS 26 (46)
T ss_dssp SCBCTTTCCBCSSHH
T ss_pred CeeCCCCCchhCCHH
Confidence 667999999987743
No 171
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.41 E-value=28 Score=16.39 Aligned_cols=15 Identities=33% Similarity=0.970 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2epz_A 12 PFDCIDCGKAFSDHI 26 (46)
T ss_dssp SBCCTTTCCCBSSHH
T ss_pred CeECCCCCceeCCHH
Confidence 668999999987743
No 172
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.39 E-value=24 Score=16.66 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2yso_A 12 SHQCRECGEIFFQYV 26 (46)
T ss_dssp CEECTTTCCEESSHH
T ss_pred CEEccccChhhCCHH
Confidence 567999999987754
No 173
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.38 E-value=24 Score=16.69 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eoy_A 12 CFKCNKCEKTFSCSK 26 (46)
T ss_dssp CEECSSSCCEESSSH
T ss_pred CEECcCCCCcCCCHH
Confidence 567999999887744
No 174
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=28.30 E-value=25 Score=16.58 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ema_A 12 RYKCNECGKVFSRNS 26 (46)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CcCCCCCcchhCCHH
Confidence 668999999987744
No 175
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.27 E-value=25 Score=16.65 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2ytp_A 12 HYECSECGKAFARKS 26 (46)
T ss_dssp CEECSSSCCEESSHH
T ss_pred CeECCcCCcccCCHH
Confidence 567999999987744
No 176
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=28.15 E-value=30 Score=16.36 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=12.2
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2emk_A 12 PYECKECGKAFSQTT 26 (46)
T ss_dssp SCBCSSSCCBCSCHH
T ss_pred ceECCCCCchhCCHH
Confidence 668999999988744
No 177
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.15 E-value=25 Score=16.58 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eml_A 12 PYECSVCGKAFSHRQ 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeeCCCcCCccCCHH
Confidence 667999999988744
No 178
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=28.12 E-value=24 Score=16.70 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2emj_A 12 PFECAECGKSFSISS 26 (46)
T ss_dssp SEECSSSSCEESSHH
T ss_pred CEECCCCCcccCCHH
Confidence 667999999987744
No 179
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.10 E-value=19 Score=19.35 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=10.0
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
..+|..||++|..
T Consensus 5 ~~~C~~C~~~I~~ 17 (69)
T 2cur_A 5 SSGCVKCNKAITS 17 (69)
T ss_dssp CCCCSSSCCCCCT
T ss_pred cCCCcccCCEeCc
Confidence 3578999998864
No 180
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.08 E-value=26 Score=16.50 Aligned_cols=15 Identities=33% Similarity=0.797 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eq1_A 12 PYKCNECGKAFRAHS 26 (46)
T ss_dssp CCCCTTTTCCCSSHH
T ss_pred CeECCcCChhhCCHH
Confidence 567999999987743
No 181
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=27.84 E-value=47 Score=21.53 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=18.5
Q ss_pred CCCccccchHHHHHHHHHccCChhhHHHhcCCc
Q 035172 9 TCGKVIGNKWDTYLDLLQADYPEGDALDALGLV 41 (71)
Q Consensus 9 TCGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~~ 41 (71)
-||.. ..-|..|++-+ +.+|++||+.
T Consensus 74 K~~~~-~~iY~~~lqEl------kPtl~ELGI~ 99 (109)
T 1v54_E 74 KAGPH-KEIYPYVIQEL------RPTLNELGIS 99 (109)
T ss_dssp HTTTC-TTHHHHHHHHH------HHHHHHHTCC
T ss_pred HhcCc-hhhHHHHHHHH------hhHHHHhCCC
Confidence 35555 45577777777 6789999985
No 182
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.83 E-value=26 Score=16.54 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytk_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CEeCCcCCCccCCHH
Confidence 567999999987754
No 183
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.72 E-value=26 Score=16.60 Aligned_cols=15 Identities=33% Similarity=0.871 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em8_A 12 PYKCVECGKGYKRRL 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECcccCchhCCHH
Confidence 567999999988754
No 184
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.67 E-value=25 Score=16.58 Aligned_cols=15 Identities=40% Similarity=0.955 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2eq0_A 12 PYKCHECGKVFRRNS 26 (46)
T ss_dssp CEECTTTCCEESSHH
T ss_pred CeECCCCCchhCCHH
Confidence 667999999987744
No 185
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.61 E-value=22 Score=19.14 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=7.8
Q ss_pred cccccCCCcccc
Q 035172 4 PVRCFTCGKVIG 15 (71)
Q Consensus 4 PvRCfTCGkvi~ 15 (71)
..+|..||+.|.
T Consensus 5 ~~~C~~C~~~I~ 16 (72)
T 1x4k_A 5 SSGCQECKKTIM 16 (72)
T ss_dssp CCCBSSSCCCCC
T ss_pred CCCCccCCCccc
Confidence 346777777665
No 186
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.60 E-value=75 Score=20.19 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=24.3
Q ss_pred chHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHHHHHhc
Q 035172 16 NKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61 (71)
Q Consensus 16 ~~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~ 61 (71)
.||+++..+ .|.+..+|.. .+|+++++|.+
T Consensus 68 aKw~AW~~l--~gms~eeAm~--------------~YI~lv~~l~~ 97 (116)
T 2cqu_A 68 AKWDAWNAL--GSLPKEAARQ--------------NYVDLVSSLSP 97 (116)
T ss_dssp HHHHHHHHH--CSCCHHHHHH--------------HHHHHHHHHCS
T ss_pred HHHHHHHHh--cCCCHHHHHH--------------HHHHHHHHHcc
Confidence 478888875 7888888877 57899999986
No 187
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.52 E-value=29 Score=16.95 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=11.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 4 ~~~C~~C~~~f~~~~ 18 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY 18 (57)
T ss_dssp -CBCTTTCCBCSCHH
T ss_pred CccCCCCcchhCChH
Confidence 567999999887754
No 188
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.44 E-value=29 Score=16.41 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eoh_A 12 PYECKECRKTFIQIG 26 (46)
T ss_dssp SCCCSSSCCCCSSHH
T ss_pred CcCCCCcCchhCCHH
Confidence 567999999987743
No 189
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.40 E-value=26 Score=16.56 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em5_A 12 SHQCHECGRGFTLKS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCcCCCccCCHH
Confidence 567999999987743
No 190
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.38 E-value=32 Score=16.14 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 10 ~~~C~~C~k~f~~~~ 24 (43)
T 2yrm_A 10 AFFCNECDCRFSEEA 24 (43)
T ss_dssp CBCCSSSCCCBSSHH
T ss_pred CEECCCCCCeeCChH
Confidence 567999999987743
No 191
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.31 E-value=26 Score=16.44 Aligned_cols=16 Identities=38% Similarity=0.773 Sum_probs=12.6
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+..+.+..
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2epw_A 12 PCKCTECGKAFCWKSQ 27 (46)
T ss_dssp SEECSSSCCEESSSHH
T ss_pred CeeCCCCCCccCCHHH
Confidence 6679999999877543
No 192
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.27 E-value=30 Score=16.26 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2ytn_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SCBCTTTCCBCSSHH
T ss_pred CeECCCCCCeeCCHH
Confidence 668999999987743
No 193
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.17 E-value=27 Score=16.39 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=12.6
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2emm_A 12 PHKCNECGKSFIQSAH 27 (46)
T ss_dssp SEECSSSCCEESSHHH
T ss_pred CeeCCCCChhhCCHHH
Confidence 5679999999887543
No 194
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.16 E-value=29 Score=16.45 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2eom_A 12 GHRCSDCGKFFLQAS 26 (46)
T ss_dssp SCCCSSSCCCCSSHH
T ss_pred CcCCCCCCCeeCChH
Confidence 567999999987743
No 195
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.11 E-value=28 Score=16.31 Aligned_cols=15 Identities=33% Similarity=0.840 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytr_A 12 PYKCNECGKAFSQTS 26 (46)
T ss_dssp TTCCTTTCCCCSSHH
T ss_pred CcCCCCCCCccCCHH
Confidence 567999999987743
No 196
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=27.05 E-value=24 Score=14.44 Aligned_cols=16 Identities=19% Similarity=0.667 Sum_probs=12.0
Q ss_pred ccccc--CCCccccchHH
Q 035172 4 PVRCF--TCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCf--TCGkvi~~~~e 19 (71)
|-.|. .||+..+....
T Consensus 2 ~~~C~~~~C~k~f~~~~~ 19 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRK 19 (29)
T ss_dssp CEEECSTTTCEEESSHHH
T ss_pred CCCCcCCcCcCccCCHHH
Confidence 55788 99998877543
No 197
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=27.00 E-value=22 Score=20.07 Aligned_cols=14 Identities=50% Similarity=0.982 Sum_probs=11.4
Q ss_pred cccccccCCCcccc
Q 035172 2 IIPVRCFTCGKVIG 15 (71)
Q Consensus 2 iiPvRCfTCGkvi~ 15 (71)
+.|..|..||+.|+
T Consensus 17 ~~~~~C~~Cg~~i~ 30 (61)
T 4b6d_A 17 IKPESCVPCGKRIK 30 (61)
T ss_dssp CSCEECTTTCCEEC
T ss_pred cCCcccccccCEEE
Confidence 45788999999884
No 198
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.93 E-value=24 Score=19.40 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=9.3
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
-.+|..||++|..
T Consensus 15 ~~~C~~C~~~I~~ 27 (80)
T 1x3h_A 15 SPKCGGCNRPVLE 27 (80)
T ss_dssp SCBCTTTCCBCCS
T ss_pred CCccccCCCeecc
Confidence 3578888888764
No 199
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=26.68 E-value=31 Score=17.09 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=12.2
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (60)
T 2adr_A 2 SFVCEVCTRAFARQEH 17 (60)
T ss_dssp CBCCTTTCCCBSCHHH
T ss_pred cCcCCCCccccCCHHH
Confidence 5679999998877543
No 200
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.63 E-value=30 Score=16.32 Aligned_cols=15 Identities=40% Similarity=0.977 Sum_probs=12.1
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2emz_A 12 PFKCNECGKGFGRRS 26 (46)
T ss_dssp SCCCSSSCCCCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 567999999887754
No 201
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.61 E-value=28 Score=16.46 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.6
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|..|..||+..+.+
T Consensus 12 ~~~C~~C~k~F~~~ 25 (46)
T 2emf_A 12 HFECTECGKAFTRK 25 (46)
T ss_dssp CEECSSSCCEESCH
T ss_pred CeECCCCCchhCCH
Confidence 66799999998774
No 202
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=26.57 E-value=47 Score=19.85 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=20.6
Q ss_pred hHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHHHHHhc
Q 035172 17 KWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61 (71)
Q Consensus 17 ~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~ 61 (71)
||+++..+ .|.+..+|.. .+|+++++|++
T Consensus 55 Kw~AW~~l--~gms~eeA~~--------------~Yi~~v~~l~~ 83 (87)
T 2cb8_A 55 KWDAWNEL--KGTSKEDAMK--------------AYINKVEELKK 83 (87)
T ss_dssp HHHHHHTT--TTCCHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHH--------------HHHHHHHHHHH
Confidence 67777765 6788888876 45777777653
No 203
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.40 E-value=23 Score=19.34 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=7.9
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
+|..|++++++
T Consensus 41 ~C~~C~~~L~~ 51 (77)
T 1g47_A 41 VCAQCFQQFPE 51 (77)
T ss_dssp CCTTTCCCCGG
T ss_pred eECCCCCCCCC
Confidence 46677888876
No 204
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=26.33 E-value=64 Score=19.87 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.0
Q ss_pred chHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHHHHHhc
Q 035172 16 NKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61 (71)
Q Consensus 16 ~~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~ 61 (71)
.||+++..+ .|.+.++|.. .+|+++++|.+
T Consensus 63 aKw~AW~~l--~gmS~eeAm~--------------~YI~lv~~l~~ 92 (96)
T 2lbb_A 63 YKWEAWNAL--RGMSTESAKE--------------AYVKLLDTLAP 92 (96)
T ss_dssp HHHHHHHHT--TTCCHHHHHH--------------HHHHHHHHHCG
T ss_pred HHHHHHHHh--cCCCHHHHHH--------------HHHHHHHHHhc
Confidence 378888775 6888888876 45777777764
No 205
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.19 E-value=21 Score=19.98 Aligned_cols=12 Identities=42% Similarity=1.057 Sum_probs=9.0
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
+.|-.||.++++
T Consensus 31 ~vC~~CGlVl~e 42 (58)
T 1dl6_A 31 MICPECGLVVGD 42 (58)
T ss_dssp EECTTTCCEECC
T ss_pred EEeCCCCCEEec
Confidence 468888888875
No 206
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=26.08 E-value=24 Score=19.39 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=9.2
Q ss_pred cccCCCccccch
Q 035172 6 RCFTCGKVIGNK 17 (71)
Q Consensus 6 RCfTCGkvi~~~ 17 (71)
+|..|++++++.
T Consensus 29 ~C~~C~~~L~~~ 40 (76)
T 1iml_A 29 KCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTCCBCCTT
T ss_pred CccccCccCCCC
Confidence 577889988763
No 207
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.07 E-value=34 Score=16.12 Aligned_cols=15 Identities=40% Similarity=0.837 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytq_A 12 PYGCSECGKAFSSKS 26 (46)
T ss_dssp SCBCSSSCCBCSCHH
T ss_pred CcCCCccChhhCChH
Confidence 567999999988743
No 208
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.07 E-value=29 Score=16.34 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytj_A 12 PYICAECGKAFTIRS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCChhhCCHH
Confidence 567999999987744
No 209
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.67 E-value=29 Score=16.32 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2yu8_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SEECSSSCCEESSSH
T ss_pred CeECCcCCchhCCHH
Confidence 567999999987754
No 210
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.64 E-value=25 Score=16.60 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+....+..
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (45)
T 2epu_A 12 PFECTHCGKSFRAKGN 27 (45)
T ss_dssp SEEETTTTEEESSHHH
T ss_pred CccCCCCCCccCChHH
Confidence 5679999999877543
No 211
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.58 E-value=26 Score=19.87 Aligned_cols=13 Identities=46% Similarity=0.790 Sum_probs=9.7
Q ss_pred cccccccCCCccc
Q 035172 2 IIPVRCFTCGKVI 14 (71)
Q Consensus 2 iiPvRCfTCGkvi 14 (71)
+.-|||+-||.-|
T Consensus 21 lP~IrCpyCGyri 33 (48)
T 4ayb_P 21 LPGVRCPYCGYKI 33 (48)
T ss_dssp CSSSCCTTTCCSC
T ss_pred CCCcccCccCcEE
Confidence 4458899999765
No 212
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.57 E-value=30 Score=16.28 Aligned_cols=15 Identities=40% Similarity=0.797 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ep2_A 12 PYECSICGKSFTKKS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CcCCCCCCcccCCHH
Confidence 567999999987744
No 213
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.35 E-value=30 Score=16.25 Aligned_cols=16 Identities=38% Similarity=1.030 Sum_probs=12.5
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 12 ~~~C~~C~k~F~~~~~ 27 (46)
T 2emy_A 12 PYECHECGKAFSRKYQ 27 (46)
T ss_dssp CEECSSSCCEESSHHH
T ss_pred CcCCCCCCcccCcHHH
Confidence 6679999999877543
No 214
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.13 E-value=21 Score=20.12 Aligned_cols=10 Identities=60% Similarity=1.511 Sum_probs=8.1
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
.||-||+. ||
T Consensus 9 ~C~kCGk~-GH 18 (55)
T 2ysa_A 9 TCFRCGKP-GH 18 (55)
T ss_dssp CCTTTCCT-TS
T ss_pred ccccCCCc-Cc
Confidence 59999997 55
No 215
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.99 E-value=37 Score=15.87 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (47)
T 2epx_A 12 PYECIECGKAFIQNT 26 (47)
T ss_dssp SBCCSSSCCCBSSHH
T ss_pred CEECCccCchhCChH
Confidence 668999999987743
No 216
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.99 E-value=31 Score=16.22 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2em3_A 12 PYECKVCSKAFTQKA 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCCcccCCHH
Confidence 567999999987744
No 217
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=24.96 E-value=30 Score=16.34 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+..+.+..
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2el6_A 12 PYKCSQCEKSFSGKLR 27 (46)
T ss_dssp SEECSSSSCEESSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 5679999999887543
No 218
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=24.94 E-value=36 Score=26.04 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=11.5
Q ss_pred ccccCCCccccchH
Q 035172 5 VRCFTCGKVIGNKW 18 (71)
Q Consensus 5 vRCfTCGkvi~~~~ 18 (71)
|-|+|||+-..+..
T Consensus 272 ISCPtCGRt~~dl~ 285 (366)
T 3noy_A 272 VACPTCGRIEVDLP 285 (366)
T ss_dssp EECCCCTTCCSCHH
T ss_pred EECCCCCCccccHH
Confidence 56999999888763
No 219
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.94 E-value=30 Score=16.21 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=12.4
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|..||+..+....
T Consensus 12 ~~~C~~C~k~f~~~~~ 27 (46)
T 2en8_A 12 SHTCDECGKNFCYISA 27 (46)
T ss_dssp SEECTTTCCEESSHHH
T ss_pred CeECCCcCcccCCHHH
Confidence 5679999999877543
No 220
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=31 Score=16.27 Aligned_cols=15 Identities=33% Similarity=0.880 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2em2_A 12 PFKCKECGKAFRQNI 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CEECCcCCchhCCHH
Confidence 567999999987754
No 221
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=24.82 E-value=28 Score=16.46 Aligned_cols=15 Identities=33% Similarity=0.910 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ely_A 12 PFKCVECGKGFSRRS 26 (46)
T ss_dssp SBCCSSSCCCBSSTT
T ss_pred CcccCccCcccCCHH
Confidence 667999999887754
No 222
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=24.78 E-value=22 Score=21.48 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=9.2
Q ss_pred cccccCCCccc
Q 035172 4 PVRCFTCGKVI 14 (71)
Q Consensus 4 PvRCfTCGkvi 14 (71)
|-||..||.+.
T Consensus 56 ~~RC~eCG~~f 66 (80)
T 2odx_A 56 VARCWECGSVY 66 (80)
T ss_dssp EEECSSSCCEE
T ss_pred CeECCCCCeEE
Confidence 67999999864
No 223
>3sks_A Putative oligoendopeptidase F; structural genomics, center for structural genomics of infec diseases, csgid, protease, hydrolase; 2.05A {Bacillus anthracis}
Probab=24.74 E-value=53 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.9
Q ss_pred hHHHHHHHHHcc--CChhhHHHhcCCcch
Q 035172 17 KWDTYLDLLQAD--YPEGDALDALGLVRY 43 (71)
Q Consensus 17 ~~e~y~~~v~~~--~~~~~vLd~Lg~~ry 43 (71)
-|++|++.++.| .+|.++|...|++.-
T Consensus 514 ~~~~Y~~~L~~Ggs~~~~ellk~aGvd~~ 542 (567)
T 3sks_A 514 AWEDYVNLCQQGGSKSFLELVEVANLTSP 542 (567)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHTTCCCT
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHcCCCCC
Confidence 478999999877 688999999999843
No 224
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=24.69 E-value=31 Score=16.16 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2el4_A 12 PYGCSQCAKTFSLKS 26 (46)
T ss_dssp SEECSSSSCEESSHH
T ss_pred ceECCCCCchhCCHH
Confidence 567999999987743
No 225
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.60 E-value=31 Score=16.20 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+......
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2en3_A 12 PFQCKECGMNFSWSC 26 (46)
T ss_dssp SEECSSSCCEESSSH
T ss_pred CeeCcccChhhCCHH
Confidence 667999999887654
No 226
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.47 E-value=30 Score=16.25 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytg_A 12 PFKCGECGKSYNQRV 26 (46)
T ss_dssp SEECTTTCCEESSSH
T ss_pred CeECCCCCcccCCHH
Confidence 567999999887744
No 227
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.30 E-value=35 Score=15.93 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eq4_A 12 LYNCKECGKSFSRAP 26 (46)
T ss_dssp CCCBTTTTBCCSCHH
T ss_pred CeECCCCCCccCchH
Confidence 667999999987743
No 228
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.24 E-value=27 Score=19.19 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=9.5
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
-.+|..||++|..
T Consensus 15 ~~~C~~C~~~I~~ 27 (80)
T 2cuq_A 15 APRCARCSKTLTQ 27 (80)
T ss_dssp SCCCTTTCCCCCS
T ss_pred CCcCCCCCCEecC
Confidence 3578888888865
No 229
>1p35_A P35; cell death, baculovirus; 2.20A {Autographa californicanucleopolyhedrovirus} SCOP: b.28.1.1 PDB: 2fun_A 1i4e_A 1i3p_A 1i3s_A
Probab=24.23 E-value=16 Score=27.41 Aligned_cols=36 Identities=31% Similarity=0.717 Sum_probs=26.9
Q ss_pred ccccCCCccccchHHHHHHHHHccCChhhHHHhcCCcchhh
Q 035172 5 VRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCC 45 (71)
Q Consensus 5 vRCfTCGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~~ryCC 45 (71)
|+|++ |.++-++++++++ .-|.+.++.+++ +++||=
T Consensus 102 V~Cq~-~~~lk~ny~K~L~--~~gytd~~~iea--fkk~CL 137 (299)
T 1p35_A 102 VSCQN-GSVLKSKFAKILK--SHDYTDKKSIEA--YEKYCL 137 (299)
T ss_dssp EEEEE-GGGHHHHHHHHHH--HTTCCSHHHHHH--HHHHTH
T ss_pred EEecc-chHHHHHHHHHHH--HcCCccHHHHHH--HHHhcc
Confidence 56776 7788888999988 578887777774 456664
No 230
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.04 E-value=33 Score=16.03 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eme_A 12 PYVCDYCGKAFGLSA 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCChhhCCHH
Confidence 567999999987743
No 231
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=23.80 E-value=37 Score=15.91 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2em0_A 12 TWKCRECDMCFSQAS 26 (46)
T ss_dssp CCCCSSSCCCCSSHH
T ss_pred CeECCCCCcccCCHH
Confidence 667999999987743
No 232
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.71 E-value=34 Score=16.06 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2emp_A 12 PYMCNECGKAFSVYS 26 (46)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CeECCCCCchhCCHH
Confidence 567999999987743
No 233
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.67 E-value=30 Score=16.23 Aligned_cols=15 Identities=40% Similarity=0.895 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+.+.
T Consensus 12 ~~~C~~C~k~F~~~~ 26 (46)
T 2eoe_A 12 PYKCNECGKVFTQNS 26 (46)
T ss_dssp SSEETTTTEECSSHH
T ss_pred CeECCCcChhhCCHH
Confidence 667999999987754
No 234
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.63 E-value=27 Score=19.34 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.0
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
.+|..||++|..
T Consensus 8 ~~C~~C~~~I~~ 19 (81)
T 1a7i_A 8 NKCGACGRTVYH 19 (81)
T ss_dssp CBCSSSCCBCSS
T ss_pred CcCcCcCccccC
Confidence 468888888853
No 235
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.60 E-value=60 Score=22.19 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=18.1
Q ss_pred CCccccchHHHHHHHHHccCChhhHHHhcCCc
Q 035172 10 CGKVIGNKWDTYLDLLQADYPEGDALDALGLV 41 (71)
Q Consensus 10 CGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~~ 41 (71)
||.. ..-|.-|++.+ +.+|++||+.
T Consensus 118 ~~~~-~~iY~y~lqEl------kPtl~ELGI~ 142 (152)
T 2y69_E 118 AGPH-KEIYPYVIQEL------RPTLNELGIS 142 (152)
T ss_dssp TTTC-TTHHHHHHHHH------HHHHHHHTCC
T ss_pred cCCc-hhhHHHHHHHH------hhHHHHhCCC
Confidence 5555 55577777776 6789999985
No 236
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.36 E-value=30 Score=16.25 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=11.8
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 10 ~~~C~~C~k~f~~~~ 24 (45)
T 2epq_A 10 PYSCPVCGLRFKRKD 24 (45)
T ss_dssp SSEETTTTEECSCHH
T ss_pred CCcCCCCCcccCCHH
Confidence 678999999887644
No 237
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=23.33 E-value=32 Score=17.37 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=12.5
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|-.|..||+.......
T Consensus 10 ~~~C~~C~k~f~~~~~ 25 (66)
T 2drp_A 10 TYRCKVCSRVYTHISN 25 (66)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ceECCCCcchhCCHHH
Confidence 5679999999887554
No 238
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=23.15 E-value=49 Score=19.17 Aligned_cols=27 Identities=7% Similarity=-0.040 Sum_probs=21.0
Q ss_pred cccchHHHHHHHHHccCChhhHHHhcC
Q 035172 13 VIGNKWDTYLDLLQADYPEGDALDALG 39 (71)
Q Consensus 13 vi~~~~e~y~~~v~~~~~~~~vLd~Lg 39 (71)
.+...+++-.+.+++|.+.+++|.+.+
T Consensus 47 ~~~~~~~~i~~~l~~G~sls~al~~~~ 73 (116)
T 2whn_A 47 KFREILKQVRTDVEGGMAFSEALSKHK 73 (116)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHTST
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHCC
Confidence 344455677778889999999999876
No 239
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=23.04 E-value=32 Score=19.34 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=21.4
Q ss_pred CCccccchHHHHHHHHHccCChhhHHHhcCC
Q 035172 10 CGKVIGNKWDTYLDLLQADYPEGDALDALGL 40 (71)
Q Consensus 10 CGkvi~~~~e~y~~~v~~~~~~~~vLd~Lg~ 40 (71)
|-..+...-....+.+.++.+|.++=..||+
T Consensus 49 C~~~V~~y~~~ii~~l~~~~~P~~iC~~l~l 79 (83)
T 2gtg_A 49 CQEVVDTYGSSILSILLEEVSPELVCSMLHL 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHhcCC
Confidence 4444545455666777788899988887775
No 240
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=22.89 E-value=30 Score=17.24 Aligned_cols=10 Identities=40% Similarity=0.949 Sum_probs=7.4
Q ss_pred cccCCCcccc
Q 035172 6 RCFTCGKVIG 15 (71)
Q Consensus 6 RCfTCGkvi~ 15 (71)
.||.||.+-.
T Consensus 21 ~C~~C~~pr~ 30 (32)
T 2lk0_A 21 KCFRCGADKF 30 (32)
T ss_dssp BCTTTCCBTT
T ss_pred eecCCCCcCC
Confidence 4999997643
No 241
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.75 E-value=40 Score=15.87 Aligned_cols=15 Identities=33% Similarity=0.953 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|..|..||+......
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytt_A 12 PYQCSECGKSFSGSY 26 (46)
T ss_dssp TTCCSSSCCCCSSHH
T ss_pred CeeCCCCCcccCCHH
Confidence 567999999987754
No 242
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.70 E-value=37 Score=15.94 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ytd_A 12 PYKCSECGKAFHRHT 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCCCeeCChH
Confidence 567999999987754
No 243
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=22.52 E-value=45 Score=14.07 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=11.3
Q ss_pred ccccc--CCCccccchH
Q 035172 4 PVRCF--TCGKVIGNKW 18 (71)
Q Consensus 4 PvRCf--TCGkvi~~~~ 18 (71)
|-.|. .||+..+...
T Consensus 2 p~~C~~~~C~k~f~~~~ 18 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSD 18 (31)
T ss_dssp CCBCCSTTCCCBCSSHH
T ss_pred CcCCcCCCCCcccCCHh
Confidence 56787 8999987743
No 244
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.51 E-value=30 Score=17.91 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=7.6
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
|-.|..||+....
T Consensus 39 ~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 39 TFRCTFCHTEVEE 51 (62)
T ss_dssp EEBCSSSCCBCEE
T ss_pred CEECCCCCCcccc
Confidence 4556677765543
No 245
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.25 E-value=72 Score=14.76 Aligned_cols=28 Identities=7% Similarity=-0.015 Sum_probs=21.3
Q ss_pred HHHHHHHHHccCChhhHHHhcCCcchhh
Q 035172 18 WDTYLDLLQADYPEGDALDALGLVRYCC 45 (71)
Q Consensus 18 ~e~y~~~v~~~~~~~~vLd~Lg~~ryCC 45 (71)
+++...+..+|.+..++-..||+.+---
T Consensus 11 ~~~i~~~~~~g~s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 11 RAQLDVMKLLNVSLHEMSRKISRSRHCI 38 (51)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHH
Confidence 4456666778999999999999975433
No 246
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.24 E-value=31 Score=16.20 Aligned_cols=15 Identities=40% Similarity=0.939 Sum_probs=12.0
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ysp_A 12 PYKCEKCGKGYNSKF 26 (46)
T ss_dssp SEEETTTTEEESCHH
T ss_pred CeECCCCCCccCCHH
Confidence 567999999987754
No 247
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.22 E-value=27 Score=22.70 Aligned_cols=11 Identities=36% Similarity=1.180 Sum_probs=8.2
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
++||.||+. +|
T Consensus 98 ~~C~~Cg~~-GH 108 (148)
T 3ts2_A 98 DRCYNCGGL-DH 108 (148)
T ss_dssp CCCTTTCCS-SC
T ss_pred CcccEeCCc-cc
Confidence 468988876 55
No 248
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.15 E-value=30 Score=17.19 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=11.8
Q ss_pred cccCCCccc-cchHHHHH
Q 035172 6 RCFTCGKVI-GNKWDTYL 22 (71)
Q Consensus 6 RCfTCGkvi-~~~~e~y~ 22 (71)
-|-||.|+- -.-|+.|+
T Consensus 7 fcetcskpwlvgwwdqfk 24 (26)
T 1loi_A 7 FCETCSKPWLVGWWDQFK 24 (26)
T ss_dssp HHHTSSCTTGGGGHHHHT
T ss_pred HHHhcCCchhhhhHHHhc
Confidence 488999984 34567764
No 249
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.14 E-value=31 Score=19.10 Aligned_cols=13 Identities=31% Similarity=0.605 Sum_probs=9.0
Q ss_pred cccccCCCccccc
Q 035172 4 PVRCFTCGKVIGN 16 (71)
Q Consensus 4 PvRCfTCGkvi~~ 16 (71)
..+|..||++|..
T Consensus 15 ~~~C~~C~~~I~~ 27 (81)
T 2dlo_A 15 LEKCATCSQPILD 27 (81)
T ss_dssp CCBCTTTCCBCCS
T ss_pred CCccccCCCeecc
Confidence 3567888888763
No 250
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=21.95 E-value=1.1e+02 Score=16.79 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.0
Q ss_pred ChhhHHHhcCCcchhhhhHHHHhHHHH
Q 035172 30 PEGDALDALGLVRYCCRRMLMTHVDLI 56 (71)
Q Consensus 30 ~~~~vLd~Lg~~ryCCRrmllthvdli 56 (71)
+..+ |.+||++..=-|..++..+.-.
T Consensus 42 ~~~d-L~~lGI~~~g~r~kil~~i~~L 67 (74)
T 2gle_A 42 DGNK-LKALGMTSSQDRALVKKKLKEM 67 (74)
T ss_dssp CHHH-HHTTTCCCHHHHHHHHHHHHSH
T ss_pred CHHH-HHHcCCCCHHHHHHHHHHHHHH
Confidence 4455 8999999888888888776543
No 251
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=21.89 E-value=23 Score=19.07 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=12.3
Q ss_pred cccccCCCccccchHH
Q 035172 4 PVRCFTCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCfTCGkvi~~~~e 19 (71)
|..|+.||..-...|.
T Consensus 1 p~~C~~C~tt~Tp~WR 16 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWR 16 (43)
T ss_dssp -CCCSSSCCCCCSCCE
T ss_pred CCcCCccCCCCCCccc
Confidence 6789999988877774
No 252
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.80 E-value=33 Score=16.14 Aligned_cols=15 Identities=40% Similarity=0.824 Sum_probs=11.9
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+....+.
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2en6_A 12 PYGCNECGKTFSQKS 26 (46)
T ss_dssp CEEETTTTEEESSHH
T ss_pred CeECCCCCcccCchH
Confidence 567999999987754
No 253
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.73 E-value=31 Score=19.61 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.3
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
+|..|++.+..
T Consensus 53 ~C~~C~~~L~~ 63 (89)
T 1x64_A 53 VCADCNLNLKQ 63 (89)
T ss_dssp CCSSSCCCTTT
T ss_pred EecCCCCCCCC
Confidence 57778888875
No 254
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=21.38 E-value=47 Score=19.72 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=19.7
Q ss_pred hHHHHHHHHHccCChhhHHHhcCCcchhhhhHHHHhHHHHHHHhc
Q 035172 17 KWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLN 61 (71)
Q Consensus 17 ~~e~y~~~v~~~~~~~~vLd~Lg~~ryCCRrmllthvdlid~ll~ 61 (71)
||+++..+ .|.++++|.. .+|+++++|.+
T Consensus 54 Kw~AW~~l--~gms~eeA~~--------------~YI~~v~~l~~ 82 (86)
T 1st7_A 54 KWEAWENL--KGKSQEDAEK--------------EYIALVDQLIA 82 (86)
T ss_dssp HHHHHHTT--TTTHHHHHHH--------------HHHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHH--------------HHHHHHHHHhh
Confidence 67777664 6777777766 45677777653
No 255
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.27 E-value=34 Score=19.27 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=7.6
Q ss_pred cccCCCccccc
Q 035172 6 RCFTCGKVIGN 16 (71)
Q Consensus 6 RCfTCGkvi~~ 16 (71)
+|..|++.++.
T Consensus 44 ~C~~C~~~L~~ 54 (82)
T 2co8_A 44 RCHTCEATLWP 54 (82)
T ss_dssp BCSSSCCBCCT
T ss_pred EEcCCCCCcCC
Confidence 56677777765
No 256
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=21.14 E-value=38 Score=17.44 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=9.6
Q ss_pred cccccCCCccccch
Q 035172 4 PVRCFTCGKVIGNK 17 (71)
Q Consensus 4 PvRCfTCGkvi~~~ 17 (71)
|-.|..||+..+..
T Consensus 49 ~~~C~~C~~~f~~~ 62 (73)
T 1f2i_G 49 PFQCRICMRNFSRS 62 (73)
T ss_dssp CEECTTTCCEESCH
T ss_pred CeECCCCCchhCCH
Confidence 45677888776653
No 257
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.13 E-value=34 Score=20.42 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=6.3
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
.+|..||++|.
T Consensus 4 ~~C~~C~~~I~ 14 (126)
T 2xqn_T 4 PRCAGCDELIF 14 (126)
T ss_dssp CBBTTTSSBCC
T ss_pred CCCccCCCEeC
Confidence 35666666655
No 258
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.09 E-value=31 Score=19.48 Aligned_cols=11 Identities=27% Similarity=0.616 Sum_probs=8.1
Q ss_pred ccccCCCcccc
Q 035172 5 VRCFTCGKVIG 15 (71)
Q Consensus 5 vRCfTCGkvi~ 15 (71)
-+|..||++|.
T Consensus 16 ~~C~~C~~~I~ 26 (80)
T 2dj7_A 16 SHCAGCKEEIK 26 (80)
T ss_dssp SCCTTTCCCCS
T ss_pred CCCcCcCCeeC
Confidence 35888888875
No 259
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.07 E-value=36 Score=19.04 Aligned_cols=12 Identities=33% Similarity=0.869 Sum_probs=9.1
Q ss_pred cccCCCccccch
Q 035172 6 RCFTCGKVIGNK 17 (71)
Q Consensus 6 RCfTCGkvi~~~ 17 (71)
+|..|+++|++.
T Consensus 43 ~C~~C~~~L~~~ 54 (79)
T 2cor_A 43 NCANCGKELTAD 54 (79)
T ss_dssp BCSSSCCBCCTT
T ss_pred EeCCCCCccCCC
Confidence 577888888764
No 260
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=21.02 E-value=60 Score=20.35 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=18.7
Q ss_pred HHHHHHHHccCChhhHHHhc-CCcc
Q 035172 19 DTYLDLLQADYPEGDALDAL-GLVR 42 (71)
Q Consensus 19 e~y~~~v~~~~~~~~vLd~L-g~~r 42 (71)
+.-.+.+.+|.+++++|+++ ++++
T Consensus 55 ~~Il~~l~~G~s~eeIl~~yP~Lt~ 79 (106)
T 2ga1_A 55 WTLVAYRQQGAPDKELLANYPGLTA 79 (106)
T ss_dssp HHHHHHHHTTCCHHHHHHHSTTCCH
T ss_pred HHHHHHHHcCCCHHHHHHHCCCCCH
Confidence 34456788999999999998 6653
No 261
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.87 E-value=35 Score=16.10 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=11.8
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2eoz_A 12 PYSCNVCGKAFVLSA 26 (46)
T ss_dssp SEEETTTTEEESSHH
T ss_pred CeECcccChhhCCHH
Confidence 667999999887743
No 262
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.80 E-value=50 Score=13.95 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=11.9
Q ss_pred ccccc--CCCccccchHH
Q 035172 4 PVRCF--TCGKVIGNKWD 19 (71)
Q Consensus 4 PvRCf--TCGkvi~~~~e 19 (71)
|-.|. .||+..+....
T Consensus 3 ~~~C~~~~C~k~f~~~~~ 20 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNHD 20 (32)
T ss_dssp SBCCCCTTCCCCBSSSHH
T ss_pred CCcCcCCCCCCccCCHHH
Confidence 56788 89998877543
No 263
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.58 E-value=32 Score=19.07 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=9.5
Q ss_pred ccccCCCccccc
Q 035172 5 VRCFTCGKVIGN 16 (71)
Q Consensus 5 vRCfTCGkvi~~ 16 (71)
.+|..||+.|..
T Consensus 16 ~~C~~C~~~I~~ 27 (79)
T 1x62_A 16 PMCDKCGTGIVG 27 (79)
T ss_dssp CCCSSSCCCCCS
T ss_pred CccccCCCCccC
Confidence 478889988865
No 264
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=20.56 E-value=64 Score=19.96 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.7
Q ss_pred hhHHHhcCCcchhhhhHHHHhHHHH
Q 035172 32 GDALDALGLVRYCCRRMLMTHVDLI 56 (71)
Q Consensus 32 ~~vLd~Lg~~ryCCRrmllthvdli 56 (71)
.++|++||++..==|..++-+|.-+
T Consensus 50 ~e~LkElGI~kvGdRirIlk~vk~L 74 (85)
T 1ow5_A 50 KDILIALGVNKIGDRLKILRKSKSF 74 (85)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHH
Confidence 6899999999999999999887653
No 265
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.54 E-value=36 Score=15.98 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=11.8
Q ss_pred cccccCCCccccchH
Q 035172 4 PVRCFTCGKVIGNKW 18 (71)
Q Consensus 4 PvRCfTCGkvi~~~~ 18 (71)
|-.|..||+..+...
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2en1_A 12 PFKCEECGKRFTQNS 26 (46)
T ss_dssp SEEETTTTEEESSHH
T ss_pred CeeCCCCCcccCCHH
Confidence 567999999987743
No 266
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=20.49 E-value=71 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.2
Q ss_pred chHHHHHHHHHccCChhhHHHhcCCcc
Q 035172 16 NKWDTYLDLLQADYPEGDALDALGLVR 42 (71)
Q Consensus 16 ~~~e~y~~~v~~~~~~~~vLd~Lg~~r 42 (71)
+....|..++..|.+..++-..+|.++
T Consensus 40 E~A~a~~~L~~~G~t~eeiA~~lG~s~ 66 (178)
T 1r71_A 40 EIADFIGRELAKGKKKGDIAKEIGKSP 66 (178)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCH
Confidence 346788899999999999999999985
No 267
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.40 E-value=35 Score=19.39 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.1
Q ss_pred cccccCCCcccc
Q 035172 4 PVRCFTCGKVIG 15 (71)
Q Consensus 4 PvRCfTCGkvi~ 15 (71)
.-+|..||++|.
T Consensus 25 ~~~C~~C~~~I~ 36 (90)
T 2dar_A 25 TPMCAHCNQVIR 36 (90)
T ss_dssp CCBBSSSCCBCC
T ss_pred CCCCccCCCEec
Confidence 346888888884
No 268
>1gj7_A Urokinase-type plasminogen activator; selectivity at S1, H2O displacement, UPA, TPA, Ser190/Ala190 protease, structure-based drug design; HET: CIT 132; 1.50A {Homo sapiens} SCOP: b.47.1.2 PDB: 1c5w_A* 1c5x_A* 1c5z_A* 1gi7_A* 1gi8_A* 1gi9_A* 1c5y_A* 1gj8_A* 1gj9_A* 1gja_A* 1gjb_A* 1gjc_A* 1gjd_A* 1lmw_A* 1o3p_A* 1o5a_A* 1o5b_A* 1o5c_A* 3ig6_A*
Probab=20.14 E-value=28 Score=17.14 Aligned_cols=8 Identities=38% Similarity=0.829 Sum_probs=5.7
Q ss_pred cCCCcccc
Q 035172 8 FTCGKVIG 15 (71)
Q Consensus 8 fTCGkvi~ 15 (71)
|+||+.-.
T Consensus 11 f~CGq~~~ 18 (26)
T 1gj7_A 11 FQCGQKTL 18 (26)
T ss_pred cccCCcCC
Confidence 88998543
Done!