BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035173
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CI9|A Chain A, Crystal Structure Of The Human Hsbp1
 pdb|3CI9|B Chain B, Crystal Structure Of The Human Hsbp1
          Length = 48

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 35/41 (85%)

Query: 1  MTAFVQNLLQQMQSRFQTMSESIIAKIDEMGSRIDELEQSI 41
          +T+ VQ LLQQMQ +FQT+S+ II +ID+M SRID+LE++I
Sbjct: 7  LTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47


>pdb|3OBE|A Chain A, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
           (BDI_3400) From Parabacteroides Distasonis Atcc 8503 At
           1.70 A Resolution
 pdb|3OBE|B Chain B, Crystal Structure Of A Sugar Phosphate IsomeraseEPIMERASE
           (BDI_3400) From Parabacteroides Distasonis Atcc 8503 At
           1.70 A Resolution
          Length = 305

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 19  MSESIIAKIDEMGSRIDELEQSINDLRSEMGIEGSASPSLPSKSND 64
           ++ S+     E   + DE  +   D+ +E+G+     PSLP   N+
Sbjct: 97  LTPSLREYTKENXPKFDEFWKKATDIHAELGVSCXVQPSLPRIENE 142


>pdb|2FLQ|A Chain A, Crystal Structure Of Nitric Oxide Synthase From
          Geobacillus Stearothermophilus (Atcc 12980) Complexed
          With L-Arginine
 pdb|2FLQ|B Chain B, Crystal Structure Of Nitric Oxide Synthase From
          Geobacillus Stearothermophilus (Atcc 12980) Complexed
          With L-Arginine
          Length = 375

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 1  MTAFVQNLLQQMQSRFQTMSES-IIAKIDEMGSRIDELEQSINDLRSEMGIEGS 53
          M     + L+Q   +  T +E  IIA   E+G    E+++ +N++R E+   G+
Sbjct: 1  MVTIESDKLRQHDEQLMTKAEQFIIASYRELGKSEQEIKRRVNEIRWEVEQTGT 54


>pdb|2L7B|A Chain A, Nmr Structure Of Full Length Apoe3
          Length = 307

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 10  QQMQSRFQTMSESIIAKIDEMGS----RIDELEQSINDLRSEM 48
           Q +Q R Q   E + A+++EMGS    R+DE+++ + ++R+++
Sbjct: 209 QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKL 251


>pdb|1XWM|A Chain A, The Crystal Structure Of Phou (Phosphate Uptake
          Regulator), Structural Genomics
          Length = 217

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 1  MTAFVQNLLQQMQSRFQTMSESI-IAKIDEMGSRIDELEQSINDL 44
          M    +  LQQ    FQT + ++ +A ID  GS ID LE+ +ND 
Sbjct: 19 MGRLTEVALQQAIEAFQTQNANLAMAVIDGDGS-IDALEEEVNDF 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.123    0.317 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,776,040
Number of Sequences: 62578
Number of extensions: 50658
Number of successful extensions: 159
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)