BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035178
         (71 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54I57|MYCBP_DICDI C-Myc-binding protein homolog OS=Dictyostelium discoideum
          GN=mycbp PE=3 SV=1
          Length = 90

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71
          A+KE F+ YL+ SGV+DALTKVL  LYE++DKP  ALE
Sbjct: 5  AEKEEFKGYLEKSGVIDALTKVLVGLYEESDKPSDALE 42


>sp|Q9EQS3|MYCBP_MOUSE C-Myc-binding protein OS=Mus musculus GN=Mycbp PE=2 SV=4
          Length = 103

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPTSAL 45


>sp|Q2TBP7|MYCBP_BOVIN C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 SV=3
          Length = 103

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45


>sp|Q99417|MYCBP_HUMAN C-Myc-binding protein OS=Homo sapiens GN=MYCBP PE=1 SV=3
          Length = 103

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45


>sp|Q5R7A8|MYCBP_PONAB C-Myc-binding protein OS=Pongo abelii GN=MYCBP PE=3 SV=3
          Length = 103

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 34 AKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70
          +K+E FR+YL+ SGVLD LTKVL  LYE+ +KP SAL
Sbjct: 9  SKREQFRRYLEKSGVLDTLTKVLVALYEEPEKPNSAL 45


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,154,089
Number of Sequences: 539616
Number of extensions: 714048
Number of successful extensions: 2984
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2973
Number of HSP's gapped (non-prelim): 16
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)