Query 035178
Match_columns 71
No_of_seqs 88 out of 90
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 09:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05186 Dpy-30: Dpy-30 motif; 96.7 0.00066 1.4E-08 38.9 1.0 30 39-71 2-31 (42)
2 PF11393 IcmL: Macrophage kill 74.7 3.6 7.9E-05 26.6 2.7 20 35-54 54-73 (108)
3 PF02330 MAM33: Mitochondrial 68.5 6.5 0.00014 27.3 3.0 29 33-61 158-186 (204)
4 PF05494 Tol_Tol_Ttg2: Toluene 67.7 9.6 0.00021 25.5 3.6 23 33-56 144-166 (170)
5 PF08671 SinI: Anti-repressor 63.2 6 0.00013 21.5 1.6 12 35-46 18-29 (30)
6 PF04165 DUF401: Protein of un 61.0 8.4 0.00018 30.3 2.7 21 39-59 266-286 (385)
7 PF09269 DUF1967: Domain of un 59.5 6.9 0.00015 23.7 1.6 20 36-55 33-52 (69)
8 PF07395 Mig-14: Mig-14; Inte 58.6 13 0.00029 28.5 3.3 51 11-61 84-149 (264)
9 KOG2536 MAM33, mitochondrial m 58.2 10 0.00023 29.4 2.7 28 33-60 215-242 (263)
10 TIGR03595 Obg_CgtA_exten Obg f 57.1 10 0.00023 23.0 2.1 21 35-55 32-52 (69)
11 PRK03430 hypothetical protein; 55.3 7.9 0.00017 27.6 1.5 23 35-57 84-106 (157)
12 PF03617 IBV_3A: IBV 3A protei 54.5 4.1 8.9E-05 25.5 -0.0 13 12-24 38-50 (57)
13 PF10911 DUF2717: Protein of u 48.7 12 0.00026 24.6 1.4 15 41-55 33-47 (77)
14 PRK15312 antimicrobial resista 46.1 26 0.00056 27.7 3.2 36 26-61 134-177 (298)
15 PF10281 Ish1: Putative stress 45.8 16 0.00034 19.7 1.5 14 36-49 6-19 (38)
16 KOG4109 Histone H3 (Lys4) meth 43.5 14 0.0003 25.8 1.2 30 39-71 66-95 (116)
17 PF04712 Radial_spoke: Radial 41.1 24 0.00051 28.7 2.4 32 38-71 7-44 (491)
18 PF04361 DUF494: Protein of un 40.9 18 0.00039 25.2 1.5 20 36-55 83-102 (155)
19 PF07258 HCaRG: HCaRG protein; 40.8 4.4 9.6E-05 26.0 -1.5 31 33-63 64-94 (178)
20 PF13168 Poxvirus_B22R_C: Poxv 40.3 18 0.00039 27.2 1.5 24 46-70 42-65 (197)
21 KOG0805 Carbon-nitrogen hydrol 39.8 18 0.00039 29.1 1.5 14 33-46 79-92 (337)
22 COG4969 PilA Tfp pilus assembl 39.8 22 0.00049 23.9 1.8 19 37-55 28-46 (125)
23 smart00185 ARM Armadillo/beta- 38.1 42 0.00091 16.4 2.3 18 39-56 4-21 (41)
24 PF10815 ComZ: ComZ; InterPro 36.6 63 0.0014 20.2 3.3 25 38-62 16-50 (56)
25 PRK12726 flagellar biosynthesi 36.6 35 0.00077 27.8 2.7 34 29-63 138-171 (407)
26 cd01535 4RHOD_Repeat_4 Member 36.3 35 0.00075 22.6 2.3 22 33-54 117-139 (145)
27 PRK15117 ABC transporter perip 36.1 67 0.0015 22.9 3.8 27 32-59 174-200 (211)
28 KOG3062 RNA polymerase II elon 35.7 42 0.00091 26.5 2.9 34 10-47 246-279 (281)
29 TIGR00529 AF0261 converved hyp 34.3 43 0.00093 26.1 2.8 22 38-59 267-288 (387)
30 PF00514 Arm: Armadillo/beta-c 34.0 62 0.0014 16.7 2.6 20 38-57 3-22 (41)
31 KOG0570 Transcriptional coacti 33.0 82 0.0018 24.2 4.0 54 14-69 120-180 (223)
32 smart00441 FF Contains two con 32.5 44 0.00094 18.2 1.9 15 35-49 3-17 (55)
33 TIGR00791 gntP gluconate trans 32.2 61 0.0013 25.0 3.3 25 39-63 71-95 (440)
34 TIGR03481 HpnM hopanoid biosyn 31.8 72 0.0016 22.6 3.4 25 32-57 166-190 (198)
35 PF02469 Fasciclin: Fasciclin 31.4 43 0.00094 20.2 1.9 15 38-52 5-19 (128)
36 PF03475 3-alpha: 3-alpha doma 31.0 59 0.0013 18.0 2.3 17 32-48 31-47 (47)
37 PF09197 Rap1-DNA-bind: Rap1, 30.9 1.1E+02 0.0023 20.7 3.9 24 31-55 63-86 (105)
38 smart00315 RGS Regulator of G 30.9 49 0.0011 19.4 2.1 18 35-52 11-28 (118)
39 PF05598 DUF772: Transposase d 30.7 50 0.0011 19.0 2.1 24 34-57 54-77 (77)
40 PF11387 DUF2795: Protein of u 30.5 70 0.0015 18.0 2.6 25 35-59 9-33 (44)
41 PF09035 Tn916-Xis: Excisionas 29.7 9.7 0.00021 23.7 -1.2 14 35-48 53-66 (67)
42 cd07357 HN_L-whirlin_R2_like S 29.5 35 0.00077 22.5 1.4 27 39-65 28-54 (81)
43 PF14475 Mso1_Sec1_bdg: Sec1-b 29.2 50 0.0011 19.2 1.8 16 51-66 21-36 (41)
44 PHA00448 hypothetical protein 28.3 54 0.0012 21.2 2.1 14 48-61 4-17 (70)
45 PF06544 DUF1115: Protein of u 28.3 52 0.0011 21.5 2.0 19 36-54 108-126 (128)
46 PF06345 Drf_DAD: DRF Autoregu 28.1 52 0.0011 15.8 1.5 11 47-57 1-11 (15)
47 KOG1491 Predicted GTP-binding 28.1 51 0.0011 27.1 2.4 27 36-62 278-304 (391)
48 TIGR01519 plasmod_dom_1 Plasmo 28.0 27 0.00058 22.6 0.6 15 13-27 19-33 (70)
49 cd03481 TopoIIA_Trans_ScTopoII 27.9 73 0.0016 22.0 2.8 20 36-55 131-150 (153)
50 COG2715 SpmA Uncharacterized m 27.3 68 0.0015 24.4 2.7 26 40-67 55-84 (206)
51 PF06367 Drf_FH3: Diaphanous F 27.2 1.2E+02 0.0027 20.3 3.8 35 14-55 46-80 (197)
52 PRK13952 mscL large-conductanc 26.5 52 0.0011 23.1 1.9 14 37-50 5-18 (142)
53 PF04695 Pex14_N: Peroxisomal 26.4 50 0.0011 22.1 1.7 29 12-51 10-38 (136)
54 KOG3977 Troponin I [Cytoskelet 25.8 54 0.0012 25.1 2.0 20 30-49 12-31 (221)
55 PF08802 CytB6-F_Fe-S: Cytochr 25.6 40 0.00086 19.4 1.0 13 7-19 3-15 (39)
56 PHA00442 host recBCD nuclease 25.5 1.8E+02 0.0039 18.3 4.2 35 31-65 23-59 (59)
57 PLN02688 pyrroline-5-carboxyla 25.1 1.3E+02 0.0027 20.9 3.6 28 35-62 232-259 (266)
58 PRK11880 pyrroline-5-carboxyla 25.1 1.3E+02 0.0029 20.8 3.7 27 35-61 233-259 (267)
59 PF13709 DUF4159: Domain of un 25.0 39 0.00085 24.1 1.1 19 31-49 67-85 (207)
60 cd07358 harmonin_N_like_1 Doma 24.6 48 0.001 21.8 1.3 26 39-65 28-53 (78)
61 cd08915 V_Alix_like Protein-in 24.4 2.6E+02 0.0056 20.8 5.3 37 25-61 124-160 (342)
62 PF09715 Plasmod_dom_1: Plasmo 24.3 34 0.00074 21.9 0.6 16 13-28 19-34 (67)
63 PF10508 Proteasom_PSMB: Prote 23.9 68 0.0015 25.5 2.3 25 36-60 232-256 (503)
64 PF09312 SurA_N: SurA N-termin 23.5 41 0.00089 21.5 0.9 18 35-52 86-104 (118)
65 COG4857 Predicted kinase [Gene 23.1 92 0.002 25.8 2.9 30 32-61 284-315 (408)
66 COG4974 XerD Site-specific rec 22.7 70 0.0015 25.2 2.2 18 37-54 35-54 (300)
67 PF02447 GntP_permease: GntP f 22.6 1E+02 0.0022 24.8 3.1 27 39-65 71-97 (441)
68 PF01846 FF: FF domain; Inter 22.3 73 0.0016 17.2 1.6 18 35-53 2-19 (51)
69 PF02301 HORMA: HORMA domain; 22.2 65 0.0014 21.8 1.7 28 34-62 51-83 (208)
70 PF15615 TerB-C: TerB-C domain 22.1 1.3E+02 0.0027 20.2 3.1 29 33-61 90-123 (144)
71 PF11709 Mit_ribos_Mrp51: Mito 21.5 69 0.0015 24.4 1.9 16 32-47 155-170 (312)
72 PF03600 CitMHS: Citrate trans 20.1 95 0.0021 22.4 2.3 22 40-61 65-86 (351)
No 1
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=96.72 E-value=0.00066 Score=38.88 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=24.8
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCCCCCcCC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eKP~dalE 71 (71)
-|+||++. |+..|++.|..+- .+||+||++
T Consensus 2 ~r~YL~~~-v~p~L~~gL~~l~--~~rP~DPi~ 31 (42)
T PF05186_consen 2 ARQYLKET-VGPVLTEGLAELA--KERPEDPIE 31 (42)
T ss_dssp HHHHHHHH-THHHHHHHHHHHH--HH--SSHHH
T ss_pred HHHHHHHH-hHHHHHHHHHHHH--HHCCCChHH
Confidence 48999986 9999999999998 689999974
No 2
>PF11393 IcmL: Macrophage killing protein with similarity to conjugation protein; InterPro: IPR021055 IcmL contains two amphipathic beta-sheet regions, required for the pore-forming ability which may be related to the transfer of this protein into a host cell membrane []. The icmL gene shows significant similarity to plasmid genes involved in conjugation however IcmL is thought to be required for macrophage killing. It is unknown whether conjugation plays a role in macrophage killing [].
Probab=74.73 E-value=3.6 Score=26.61 Aligned_cols=20 Identities=40% Similarity=0.631 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcChHHHHHH
Q 035178 35 KKEAFRKYLDASGVLDALTK 54 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTK 54 (71)
=..+|.+.|+++|+|+++.+
T Consensus 54 g~~~f~~aL~~Sg~l~~ik~ 73 (108)
T PF11393_consen 54 GWNSFQKALQKSGILDAIKD 73 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHh
Confidence 45669999999999999876
No 3
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=68.45 E-value=6.5 Score=27.32 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHh
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELYE 61 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LYE 61 (71)
+.=++.|.+||+.-||=+.|+..|..+-.
T Consensus 158 e~Lq~~~~~yLeeRGId~~la~fl~~y~~ 186 (204)
T PF02330_consen 158 ENLQDAFMNYLEERGIDEELANFLHDYST 186 (204)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44567999999999999999999887643
No 4
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=67.75 E-value=9.6 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVL 56 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVL 56 (71)
...|.+|...|.+.| ||.|-..|
T Consensus 144 ~~~R~qF~~~l~~~G-id~li~~l 166 (170)
T PF05494_consen 144 ATYRSQFQSILRKNG-IDGLIEKL 166 (170)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHH
Confidence 568999999999999 99887765
No 5
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=63.25 E-value=6 Score=21.52 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhc
Q 035178 35 KKEAFRKYLDAS 46 (71)
Q Consensus 35 KkEEFRKYLE~~ 46 (71)
-+|+||.||+.+
T Consensus 18 s~eeir~FL~~~ 29 (30)
T PF08671_consen 18 SKEEIREFLEFN 29 (30)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHhC
Confidence 579999999853
No 6
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions.
Probab=60.96 E-value=8.4 Score=30.34 Aligned_cols=21 Identities=38% Similarity=0.793 Sum_probs=19.1
Q ss_pred HHHHHHhcChHHHHHHHHHHH
Q 035178 39 FRKYLDASGVLDALTKVLAEL 59 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~L 59 (71)
|+++||.+|+++.|+..|.++
T Consensus 266 Fk~~l~~tG~~~~l~~~l~~~ 286 (385)
T PF04165_consen 266 FKEILEATGVVEELPEFLSSL 286 (385)
T ss_pred HHHHHHHcChHHHHHHHHHhC
Confidence 899999999999999988764
No 7
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=59.46 E-value=6.9 Score=23.74 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcChHHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKV 55 (71)
-.-|.++|++.||.++|-++
T Consensus 33 ~~rf~~~L~~~Gv~~~L~~~ 52 (69)
T PF09269_consen 33 LRRFQRKLKKMGVEKALRKA 52 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHCCHHHHHHHc
Confidence 45799999999999999763
No 8
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=58.59 E-value=13 Score=28.52 Aligned_cols=51 Identities=20% Similarity=0.540 Sum_probs=35.7
Q ss_pred HHHHHhhhcccccc-------ccchhhhhHHHHHHHHHHHHhcChH--------HHHHHHHHHHHh
Q 035178 11 ERRQLINSNVQDRT-------SDTKIEEKEAKKEAFRKYLDASGVL--------DALTKVLAELYE 61 (71)
Q Consensus 11 ~~~~~~~~~~~~~~-------~d~~~~~~esKkEEFRKYLE~~GVi--------DaLTKVLV~LYE 61 (71)
.+.+++|.-.|.|+ .+-++++.-.+|.|.|++++.+|.+ +-|+.+-+.||+
T Consensus 84 ~~~~i~n~~~~kr~iclaK~~e~fSkKt~~~rrrElrkF~~~GG~v~~v~~~S~~Ela~iY~~Lf~ 149 (264)
T PF07395_consen 84 NKGNIINATNQKRQICLAKGPESFSKKTRKNRRRELRKFIEAGGSVRPVSEFSPEELADIYIDLFQ 149 (264)
T ss_pred hhcchhcccccccceeeEcCchhhchHHHHHHHHHHHHHHHcCCEEEEHHHCCHHHHHHHHHHHHH
Confidence 44566666655554 3445567788899999999999986 455666666665
No 9
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=58.22 E-value=10 Score=29.41 Aligned_cols=28 Identities=21% Similarity=0.571 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=++.|-+|||.-||=+.|+..|..--
T Consensus 215 e~Lqd~fh~fLEeRGI~esl~~FL~~ym 242 (263)
T KOG2536|consen 215 EELQDSFHRFLEERGIKESLASFLHAYM 242 (263)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4457899999999999999999987643
No 10
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=57.09 E-value=10 Score=23.02 Aligned_cols=21 Identities=38% Similarity=0.460 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcChHHHHHHH
Q 035178 35 KKEAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTKV 55 (71)
-..-|.+.|.+.||.++|-++
T Consensus 32 ~~~~f~~~L~~~Gv~~~L~~~ 52 (69)
T TIGR03595 32 NLRRFARKLKKLGVEDALRKA 52 (69)
T ss_pred HHHHHHHHHHHCCHHHHHHHc
Confidence 345799999999999999764
No 11
>PRK03430 hypothetical protein; Validated
Probab=55.26 E-value=7.9 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcChHHHHHHHHH
Q 035178 35 KKEAFRKYLDASGVLDALTKVLA 57 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTKVLV 57 (71)
.-.-|--|||..|||++-|+=+|
T Consensus 84 e~rGFL~fLEq~gvL~~~~RE~V 106 (157)
T PRK03430 84 SCRGFLLFLEQIQVLNLETREMV 106 (157)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHH
Confidence 44679999999999999998444
No 12
>PF03617 IBV_3A: IBV 3A protein ; InterPro: IPR005214 The gene product of gene 3 from Infectious bronchitis virus (strain CL190). Currently, the function of this protein remains unknown.
Probab=54.55 E-value=4.1 Score=25.48 Aligned_cols=13 Identities=54% Similarity=0.598 Sum_probs=10.5
Q ss_pred HHHHhhhcccccc
Q 035178 12 RRQLINSNVQDRT 24 (71)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (71)
--|+||||.|.|-
T Consensus 38 llqiin~nlqsrl 50 (57)
T PF03617_consen 38 LLQIINSNLQSRL 50 (57)
T ss_pred HHHHHHhhHHHHH
Confidence 3589999999874
No 13
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=48.67 E-value=12 Score=24.56 Aligned_cols=15 Identities=53% Similarity=0.753 Sum_probs=13.4
Q ss_pred HHHHhcChHHHHHHH
Q 035178 41 KYLDASGVLDALTKV 55 (71)
Q Consensus 41 KYLE~~GViDaLTKV 55 (71)
.||+++|+++.|.++
T Consensus 33 ~yl~~sG~i~~lr~~ 47 (77)
T PF10911_consen 33 AYLMASGIISALRKQ 47 (77)
T ss_pred HHHHHhhhHHHHHHc
Confidence 599999999999864
No 14
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=46.09 E-value=26 Score=27.65 Aligned_cols=36 Identities=19% Similarity=0.533 Sum_probs=27.0
Q ss_pred cchhhhhHHHHHHHHHHHHhcChH--------HHHHHHHHHHHh
Q 035178 26 DTKIEEKEAKKEAFRKYLDASGVL--------DALTKVLAELYE 61 (71)
Q Consensus 26 d~~~~~~esKkEEFRKYLE~~GVi--------DaLTKVLV~LYE 61 (71)
|-++.+.-.+|.|++++++.+|++ +.|+.+-+.||+
T Consensus 134 ~fSkKt~~~rrrEl~kF~~~GG~v~~is~fS~~Ela~iY~~Lf~ 177 (298)
T PRK15312 134 TFSSKFEKTRRNEYQRFLRNGGSVKSVADCSSDELTHIFIELFR 177 (298)
T ss_pred hhhhHhHHHHHHHHHHHHHcCCEEEEhHHCCHHHHHHHHHHHHH
Confidence 455668888999999999999987 345555555554
No 15
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=45.85 E-value=16 Score=19.67 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcChH
Q 035178 36 KEAFRKYLDASGVL 49 (71)
Q Consensus 36 kEEFRKYLE~~GVi 49 (71)
-++.++||++.||.
T Consensus 6 ~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 6 DSDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHHcCCC
Confidence 36889999999985
No 16
>KOG4109 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS25/DPY-30 [Transcription]
Probab=43.52 E-value=14 Score=25.78 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=23.9
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCCCCCcCC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eKP~dalE 71 (71)
=|+||.+. |.+-|+-=|-.|= .++|+||++
T Consensus 66 tRqYLdqt-VaPiLL~Gm~~lA--~~rP~nPi~ 95 (116)
T KOG4109|consen 66 TRQYLDQT-VAPILLQGMAALA--KERPSNPIS 95 (116)
T ss_pred hhhhcccc-hhHHHHHHHHHHH--hhCCCCHHH
Confidence 48999764 7888888777775 789999974
No 17
>PF04712 Radial_spoke: Radial spokehead-like protein
Probab=41.10 E-value=24 Score=28.69 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=24.2
Q ss_pred HHHHHHH------hcChHHHHHHHHHHHHhcCCCCCCcCC
Q 035178 38 AFRKYLD------ASGVLDALTKVLAELYEQNDKPFSALE 71 (71)
Q Consensus 38 EFRKYLE------~~GViDaLTKVLV~LYEE~eKP~dalE 71 (71)
.-+.||- ...|-|.|++||-++- .+||.||+|
T Consensus 7 ~AKayL~k~s~~~G~sLYdHL~~vL~kIL--~ErP~na~d 44 (491)
T PF04712_consen 7 NAKAYLQKKSNKSGDSLYDHLSDVLTKIL--DERPENAVD 44 (491)
T ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHH--HhCCCcHHH
Confidence 3456772 2358899999999998 778988864
No 18
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=40.95 E-value=18 Score=25.23 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcChHHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKV 55 (71)
-.-|--|||.+|||++.++=
T Consensus 83 ~rgfL~fLeq~gvL~~~~RE 102 (155)
T PF04361_consen 83 CRGFLLFLEQAGVLDPEQRE 102 (155)
T ss_pred HHHHHHHHHHcCCCCHHHHH
Confidence 35699999999999998873
No 19
>PF07258 HCaRG: HCaRG protein; InterPro: IPR009886 This family consists of several mammalian HCaRG(hypertension-related, calcium-regulated gene) proteins. HCaRG is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals. HCaRG is a nuclear protein potentially involved in the control of cell proliferation [].; PDB: 2H2M_A.
Probab=40.85 E-value=4.4 Score=26.05 Aligned_cols=31 Identities=29% Similarity=0.541 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhcC
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELYEQN 63 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LYEE~ 63 (71)
+.+.++|+++|+..|+=+....+|...|++.
T Consensus 64 ~~~~~~l~~~L~~lgl~~e~~~~l~~~~~~~ 94 (178)
T PF07258_consen 64 DLSEEDLRQELEQLGLPEEHAEALCKVYEQN 94 (178)
T ss_dssp ---TTTSTTTHHHTT--HHHHHHHTTTTTTT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4467899999999999999999999999865
No 20
>PF13168 Poxvirus_B22R_C: Poxvirus B22R protein C-terminal
Probab=40.34 E-value=18 Score=27.20 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=17.5
Q ss_pred cChHHHHHHHHHHHHhcCCCCCCcC
Q 035178 46 SGVLDALTKVLAELYEQNDKPFSAL 70 (71)
Q Consensus 46 ~GViDaLTKVLV~LYEE~eKP~dal 70 (71)
+|+||+-+.+---|+-+ ++|.||+
T Consensus 42 sGLID~~~~Iy~llsG~-~~P~DPv 65 (197)
T PF13168_consen 42 SGLIDAGKDIYYLLSGK-EPPPDPV 65 (197)
T ss_pred HHHHHhhhhhHhhhcCC-CCCCCcH
Confidence 58888877766555554 4999985
No 21
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=39.83 E-value=18 Score=29.08 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhc
Q 035178 33 EAKKEAFRKYLDAS 46 (71)
Q Consensus 33 esKkEEFRKYLE~~ 46 (71)
..-|+|||||++.+
T Consensus 79 ~eGR~ef~kY~a~A 92 (337)
T KOG0805|consen 79 EEGRDEFRKYHASA 92 (337)
T ss_pred hhhhHHHHHHHHHh
Confidence 44689999999864
No 22
>COG4969 PilA Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.76 E-value=22 Score=23.88 Aligned_cols=19 Identities=21% Similarity=0.544 Sum_probs=16.4
Q ss_pred HHHHHHHHhcChHHHHHHH
Q 035178 37 EAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 37 EEFRKYLE~~GViDaLTKV 55 (71)
-.|++|.++++|+++|...
T Consensus 28 P~YQ~y~~k~~v~~al~~~ 46 (125)
T COG4969 28 PLYQNYVARAQVMAALADI 46 (125)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999763
No 23
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=38.05 E-value=42 Score=16.38 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.0
Q ss_pred HHHHHHhcChHHHHHHHH
Q 035178 39 FRKYLDASGVLDALTKVL 56 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVL 56 (71)
=+.++-+.|+|+.|.+.|
T Consensus 4 ~~~~i~~~g~i~~L~~ll 21 (41)
T smart00185 4 QKQAVVDAGGLPALVELL 21 (41)
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 356778899999988865
No 24
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=36.59 E-value=63 Score=20.15 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=20.4
Q ss_pred HHHHHHHhcCh----------HHHHHHHHHHHHhc
Q 035178 38 AFRKYLDASGV----------LDALTKVLAELYEQ 62 (71)
Q Consensus 38 EFRKYLE~~GV----------iDaLTKVLV~LYEE 62 (71)
|+|..|+++|+ ++-||+|+-.-||-
T Consensus 16 Eak~~L~k~GIeLsme~~qP~m~L~~~VM~eAYEl 50 (56)
T PF10815_consen 16 EAKEELDKKGIELSMEMLQPLMQLLTKVMNEAYEL 50 (56)
T ss_pred HHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999995 78889998888863
No 25
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.56 E-value=35 Score=27.79 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHhcC
Q 035178 29 IEEKEAKKEAFRKYLDASGVLDALTKVLAELYEQN 63 (71)
Q Consensus 29 ~~~~esKkEEFRKYLE~~GViDaLTKVLV~LYEE~ 63 (71)
..++..++ ||-+||.+.||-+.+...|+....+.
T Consensus 138 ~~~~~~~~-~~~~~L~~~gV~~~~~~~l~~~~~~~ 171 (407)
T PRK12726 138 REEREQNS-DFVKFLKGRGISDTYVADFMQAGRKQ 171 (407)
T ss_pred hhhhcccH-HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33443344 99999999999999888877766544
No 26
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=36.33 E-value=35 Score=22.65 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHH-hcChHHHHHH
Q 035178 33 EAKKEAFRKYLD-ASGVLDALTK 54 (71)
Q Consensus 33 esKkEEFRKYLE-~~GViDaLTK 54 (71)
+..++.+|.||+ +.|+|++|.+
T Consensus 117 ~~~~~a~~~yl~we~~l~~q~~~ 139 (145)
T cd01535 117 DNPREAMQAYLDWEFGLVEQLGR 139 (145)
T ss_pred CChHHHHHHHHHHHHHHHHHHhh
Confidence 446889999998 7799998864
No 27
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=36.14 E-value=67 Score=22.94 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 035178 32 KEAKKEAFRKYLDASGVLDALTKVLAEL 59 (71)
Q Consensus 32 ~esKkEEFRKYLE~~GViDaLTKVLV~L 59 (71)
..+.|.+|...|.+.| ||.|-+.|-..
T Consensus 174 v~~yR~qF~~~i~~~g-id~Li~~L~~~ 200 (211)
T PRK15117 174 ITTKQNEWADLLRTKG-IDGLTAQLKSI 200 (211)
T ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHh
Confidence 4679999999999999 88887776554
No 28
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=35.70 E-value=42 Score=26.54 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=25.5
Q ss_pred HHHHHHhhhccccccccchhhhhHHHHHHHHHHHHhcC
Q 035178 10 DERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASG 47 (71)
Q Consensus 10 ~~~~~~~~~~~~~~~~d~~~~~~esKkEEFRKYLE~~G 47 (71)
.-|||.|+.| .++.+++ ..++=+.-|-.||...+
T Consensus 246 RLRrqFI~~~-~~~~~~t---~~~q~~~lFv~yLN~~~ 279 (281)
T KOG3062|consen 246 RLRRQFIKLT-KGQPLPT---DLDQLKRLFVDYLNRGT 279 (281)
T ss_pred HHHHHHHHhh-cCCCCCC---CHHHHHHHHHHHhcccc
Confidence 3589999999 4455554 55778899999998643
No 29
>TIGR00529 AF0261 converved hypothetical integral membrane protein. This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins.
Probab=34.33 E-value=43 Score=26.12 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHH
Q 035178 38 AFRKYLDASGVLDALTKVLAEL 59 (71)
Q Consensus 38 EFRKYLE~~GViDaLTKVLV~L 59 (71)
.|++.|+++|+.|.+.+.+.++
T Consensus 267 ~fk~vL~~sGi~~~l~~~~~~~ 288 (387)
T TIGR00529 267 IYKVVIEHSGVGESIAAEFVSW 288 (387)
T ss_pred HHHHHHHHcCHHHHHHHHHHhC
Confidence 4899999999999999988764
No 30
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=34.05 E-value=62 Score=16.68 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=15.9
Q ss_pred HHHHHHHhcChHHHHHHHHH
Q 035178 38 AFRKYLDASGVLDALTKVLA 57 (71)
Q Consensus 38 EFRKYLE~~GViDaLTKVLV 57 (71)
+.++.+-+.|+|..|.+.|-
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~ 22 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLK 22 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHc
Confidence 56778889999998887664
No 31
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=33.01 E-value=82 Score=24.23 Aligned_cols=54 Identities=28% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHhhh--ccccccccchhhh-----hHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCCCCCc
Q 035178 14 QLINS--NVQDRTSDTKIEE-----KEAKKEAFRKYLDASGVLDALTKVLAELYEQNDKPFSA 69 (71)
Q Consensus 14 ~~~~~--~~~~~~~d~~~~~-----~esKkEEFRKYLE~~GViDaLTKVLV~LYEE~eKP~da 69 (71)
-|||+ -+|.|.|=.|-|+ ...--|+|++|+++ |.+.|+..+++|=..-+.|.++
T Consensus 120 HLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~--~~e~l~d~~~tL~~~~~~~p~~ 180 (223)
T KOG0570|consen 120 HLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQ--VREVLDDQFQTLRGKLPAPPQS 180 (223)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcccCCCCcch
Confidence 36665 4688887776663 33445789999997 6788888888886554555443
No 32
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=32.54 E-value=44 Score=18.25 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcChH
Q 035178 35 KKEAFRKYLDASGVL 49 (71)
Q Consensus 35 KkEEFRKYLE~~GVi 49 (71)
.+++|++-|.+.+++
T Consensus 3 ~~~~F~~LL~e~~~~ 17 (55)
T smart00441 3 AKEAFKELLKEHEVI 17 (55)
T ss_pred HHHHHHHHHHhCCCC
Confidence 478899999988887
No 33
>TIGR00791 gntP gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli.
Probab=32.15 E-value=61 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.2
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQN 63 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~ 63 (71)
|=+|||++|..+.+.+.++++..+.
T Consensus 71 ~g~~m~~sGaa~~ia~~i~~~~g~~ 95 (440)
T TIGR00791 71 LGKLLADSGAAQRIALTLLAKFGKS 95 (440)
T ss_pred HHHHHHHcCHHHHHHHHHHHHhccc
Confidence 6689999999999999999988554
No 34
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=31.78 E-value=72 Score=22.57 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhcChHHHHHHHHH
Q 035178 32 KEAKKEAFRKYLDASGVLDALTKVLA 57 (71)
Q Consensus 32 ~esKkEEFRKYLE~~GViDaLTKVLV 57 (71)
....|.+|..-|.++| ||.|-+-|-
T Consensus 166 v~tyRsqF~~~i~~~g-id~Li~~L~ 190 (198)
T TIGR03481 166 LAVRRAEYGSILSSGG-FDGLIDKLE 190 (198)
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 4579999999999999 777766553
No 35
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=31.42 E-value=43 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=14.0
Q ss_pred HHHHHHHhcChHHHH
Q 035178 38 AFRKYLDASGVLDAL 52 (71)
Q Consensus 38 EFRKYLE~~GViDaL 52 (71)
.|.++|+++|+.+.|
T Consensus 5 ~f~~~l~~~~l~~~l 19 (128)
T PF02469_consen 5 TFSRLLEQAGLADLL 19 (128)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCHHHH
Confidence 699999999999998
No 36
>PF03475 3-alpha: 3-alpha domain; InterPro: IPR005163 This small triple helical domain has been predicted to assume a topology similar to helix-turn-helix domains. These domains are found at the C terminus of proteins related to the YiiM protein (P32157 from SWISSPROT) from Escherichia coli.; PDB: 1O67_C 1O65_C.
Probab=31.02 E-value=59 Score=17.96 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhcCh
Q 035178 32 KEAKKEAFRKYLDASGV 48 (71)
Q Consensus 32 ~esKkEEFRKYLE~~GV 48 (71)
+++=|+.|+|.|+++.|
T Consensus 31 a~~Wr~~~~kRL~~~~V 47 (47)
T PF03475_consen 31 AESWRKSFEKRLEKGEV 47 (47)
T ss_dssp -HHHHHHHHHHHHHSS-
T ss_pred cHHHHHHHHHHHHcCCC
Confidence 34568899999998876
No 37
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=30.92 E-value=1.1e+02 Score=20.73 Aligned_cols=24 Identities=13% Similarity=0.470 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHhcChHHHHHHH
Q 035178 31 EKEAKKEAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 31 ~~esKkEEFRKYLE~~GViDaLTKV 55 (71)
+..+=|+-||||+..-| |+.-.+-
T Consensus 63 T~~sWRDR~RKfv~~~g-i~~Yi~Y 86 (105)
T PF09197_consen 63 TENSWRDRYRKFVSEYG-IQSYIEY 86 (105)
T ss_dssp -HHHHHHHHHHTHHHH--HHHHHHH
T ss_pred chhHHHHHHHHHHHHcC-hHHHHHH
Confidence 55677999999999999 5544443
No 38
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=30.88 E-value=49 Score=19.40 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcChHHHH
Q 035178 35 KKEAFRKYLDASGVLDAL 52 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaL 52 (71)
=+.-|++||++.+-.+.|
T Consensus 11 ~~~~F~~fl~~~~~~e~l 28 (118)
T smart00315 11 GRLLFREFLESEFSEENL 28 (118)
T ss_pred HHHHHHHHHHHhcchHhH
Confidence 477899999998876543
No 39
>PF05598 DUF772: Transposase domain (DUF772); InterPro: IPR008490 This presumed domain is found at the N terminus of transposase insH and other related transposases.
Probab=30.67 E-value=50 Score=19.02 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHH
Q 035178 34 AKKEAFRKYLDASGVLDALTKVLA 57 (71)
Q Consensus 34 sKkEEFRKYLE~~GViDaLTKVLV 57 (71)
+-=-.||+-|..+|+++.|-+-+|
T Consensus 54 stl~rfr~rl~~~~~~~~lf~~~v 77 (77)
T PF05598_consen 54 STLSRFRKRLIQHGLIEKLFDQVV 77 (77)
T ss_pred HHHHHHHHHHhhccHHHHHHHHhC
Confidence 344579999999999998876554
No 40
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=30.47 E-value=70 Score=17.96 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHH
Q 035178 35 KKEAFRKYLDASGVLDALTKVLAEL 59 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTKVLV~L 59 (71)
.|++..++.+++|+-+.+..+|-.|
T Consensus 9 ~k~~Lv~~A~~~gA~~~vl~~L~~l 33 (44)
T PF11387_consen 9 DKDELVRHARRNGAPDDVLDALERL 33 (44)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 6889999999999999988888877
No 41
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=29.69 E-value=9.7 Score=23.71 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCh
Q 035178 35 KKEAFRKYLDASGV 48 (71)
Q Consensus 35 KkEEFRKYLE~~GV 48 (71)
||+.|-+||++.-.
T Consensus 53 kR~~fe~yL~~~~~ 66 (67)
T PF09035_consen 53 KRKKFEKYLDKISS 66 (67)
T ss_dssp ESHHHHHTSTT---
T ss_pred eHHHHHHHHHHhcc
Confidence 89999999998643
No 42
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=29.51 E-value=35 Score=22.51 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.9
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDK 65 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eK 65 (71)
.+.|...+.-||+|.-+|..|...++|
T Consensus 28 l~eY~~~~~tVealV~aL~elLnt~~K 54 (81)
T cd07357 28 LDEYRSGHISVDALVMALFELLNTHEK 54 (81)
T ss_pred HHHHHcCCCCHHHHHHHHHHHhccHHH
Confidence 466788888999999999999987765
No 43
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=29.20 E-value=50 Score=19.23 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCCC
Q 035178 51 ALTKVLAELYEQNDKP 66 (71)
Q Consensus 51 aLTKVLV~LYEE~eKP 66 (71)
.+.||||+-|.++-+|
T Consensus 21 ~v~r~l~~yY~~k~~~ 36 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRP 36 (41)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4678888888887665
No 44
>PHA00448 hypothetical protein
Probab=28.34 E-value=54 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHh
Q 035178 48 VLDALTKVLAELYE 61 (71)
Q Consensus 48 ViDaLTKVLV~LYE 61 (71)
.|.+|.|.+|+||-
T Consensus 4 ~I~~LGklVvkmY~ 17 (70)
T PHA00448 4 FINTLGKLVVKLYF 17 (70)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999999995
No 45
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=28.32 E-value=52 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcChHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTK 54 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTK 54 (71)
..++++||+++|+-.-..-
T Consensus 108 ~~~~~~~L~~~~~~~~~~~ 126 (128)
T PF06544_consen 108 ESEARKFLREHGLEHYFDL 126 (128)
T ss_pred HHHHHHHHHHCCCHHHHHh
Confidence 4589999999998765543
No 46
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=28.14 E-value=52 Score=15.80 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=7.4
Q ss_pred ChHHHHHHHHH
Q 035178 47 GVLDALTKVLA 57 (71)
Q Consensus 47 GViDaLTKVLV 57 (71)
||+|+|-.+|-
T Consensus 1 gvmdsllealq 11 (15)
T PF06345_consen 1 GVMDSLLEALQ 11 (15)
T ss_dssp -HHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 78888877663
No 47
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=28.08 E-value=51 Score=27.11 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhc
Q 035178 36 KEAFRKYLDASGVLDALTKVLAELYEQ 62 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKVLV~LYEE 62 (71)
-|||-+||++.|.-.+|.+.+.+-|+.
T Consensus 278 ~EE~~~~~~~~~~~s~L~~iI~~~~~~ 304 (391)
T KOG1491|consen 278 EEEAVKELEDLGDSSALPKIIKTGYSA 304 (391)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHh
Confidence 469999999999999999999988863
No 48
>TIGR01519 plasmod_dom_1 Plasmodium falciparum uncharacterized domain. This model represents an uncharacterized domain present in roughly eight hypothetical proteins of the malaria parasite Plasmodium falciparum.
Probab=28.03 E-value=27 Score=22.58 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=12.5
Q ss_pred HHHhhhccccccccc
Q 035178 13 RQLINSNVQDRTSDT 27 (71)
Q Consensus 13 ~~~~~~~~~~~~~d~ 27 (71)
..|||+|||+++|--
T Consensus 19 dklid~~v~nk~S~~ 33 (70)
T TIGR01519 19 DKLIDNNVHNKGSII 33 (70)
T ss_pred HHHHccccccCCCcc
Confidence 368999999998865
No 49
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA. S. cerevisiae Topo IIA is a homodimer encoded by a single gene. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. This transducer domain is homologous to t
Probab=27.87 E-value=73 Score=21.98 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcChHHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKV 55 (71)
.+.|-++|.++|+|+.+..+
T Consensus 131 ~~~~~~~~~k~~ii~~i~~~ 150 (153)
T cd03481 131 SEKFLKKAVKSGIVESVLSW 150 (153)
T ss_pred CHHHHHHHHHchHHHHHHHH
Confidence 58899999999999988754
No 50
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=27.28 E-value=68 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=18.7
Q ss_pred HHHHHhcChHHHHHHHH----HHHHhcCCCCC
Q 035178 40 RKYLDASGVLDALTKVL----AELYEQNDKPF 67 (71)
Q Consensus 40 RKYLE~~GViDaLTKVL----V~LYEE~eKP~ 67 (71)
-|-=|++|++|-|++++ ..|| ||-|+
T Consensus 55 MrIaE~aGLvd~larl~rP~~~~LF--pdVpp 84 (206)
T COG2715 55 MRIAEKAGLVDLLARLLRPLLRRLF--PDVPP 84 (206)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHhC--CCCCc
Confidence 35569999999999864 5666 44443
No 51
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.18 E-value=1.2e+02 Score=20.26 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.3
Q ss_pred HHhhhccccccccchhhhhHHHHHHHHHHHHhcChHHHHHHH
Q 035178 14 QLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASGVLDALTKV 55 (71)
Q Consensus 14 ~~~~~~~~~~~~d~~~~~~esKkEEFRKYLE~~GViDaLTKV 55 (71)
.+||+-|.+-.+ -..|=..|.-|...|+.+.|.+.
T Consensus 46 ~~IN~li~~~~d-------~~~R~~lr~e~~~~GL~~il~~l 80 (197)
T PF06367_consen 46 QFINSLINSPED-------LNFRVHLRNEFERLGLLDILEKL 80 (197)
T ss_dssp HHHHHHHTT-SS-------HHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHcCCCC-------HHHHHHHHHHHHHCCcHHHHHHH
Confidence 678888876632 23678889999999999888773
No 52
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=26.48 E-value=52 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=13.0
Q ss_pred HHHHHHHHhcChHH
Q 035178 37 EAFRKYLDASGVLD 50 (71)
Q Consensus 37 EEFRKYLE~~GViD 50 (71)
++|++|+-+.+|||
T Consensus 5 keFK~Fi~rGNViD 18 (142)
T PRK13952 5 KEFKEFALKGNVMD 18 (142)
T ss_pred HHHHHHHHhcCHHH
Confidence 68999999999998
No 53
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.43 E-value=50 Score=22.10 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=15.8
Q ss_pred HHHHhhhccccccccchhhhhHHHHHHHHHHHHhcChHHH
Q 035178 12 RRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASGVLDA 51 (71)
Q Consensus 12 ~~~~~~~~~~~~~~d~~~~~~esKkEEFRKYLE~~GViDa 51 (71)
++=|-|.+|++-.- .||. .||++.|+=+.
T Consensus 10 ~~FL~~p~V~~sp~--------~~k~---~FL~sKGLt~~ 38 (136)
T PF04695_consen 10 VKFLQDPKVRNSPL--------EKKI---AFLESKGLTEE 38 (136)
T ss_dssp HHHHCTTTCCCS-H--------HHHH---HHHHHCT--HH
T ss_pred HHHhCCcccccCCH--------HHHH---HHHHcCCCCHH
Confidence 44555666665432 3444 46999998765
No 54
>KOG3977 consensus Troponin I [Cytoskeleton]
Probab=25.82 E-value=54 Score=25.14 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHhcChH
Q 035178 30 EEKEAKKEAFRKYLDASGVL 49 (71)
Q Consensus 30 ~~~esKkEEFRKYLE~~GVi 49 (71)
+..+.||.+-|+|||.+|--
T Consensus 12 ~~re~kk~evrkrleeA~~~ 31 (221)
T KOG3977|consen 12 QEREAKKAEVRKRLEEAGMP 31 (221)
T ss_pred cchhHHHHHHHHHHHHhccc
Confidence 35788999999999999843
No 55
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=25.62 E-value=40 Score=19.38 Aligned_cols=13 Identities=46% Similarity=0.457 Sum_probs=7.6
Q ss_pred hhHHHHHHHhhhc
Q 035178 7 VEHDERRQLINSN 19 (71)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (71)
|-.-+|||+.|--
T Consensus 3 VPdm~RR~lmN~l 15 (39)
T PF08802_consen 3 VPDMSRRQLMNLL 15 (39)
T ss_dssp ---HHHHHHHHHH
T ss_pred CCChhHHHHHHHH
Confidence 3445789998853
No 56
>PHA00442 host recBCD nuclease inhibitor
Probab=25.53 E-value=1.8e+02 Score=18.29 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhcCh--HHHHHHHHHHHHhcCCC
Q 035178 31 EKEAKKEAFRKYLDASGV--LDALTKVLAELYEQNDK 65 (71)
Q Consensus 31 ~~esKkEEFRKYLE~~GV--iDaLTKVLV~LYEE~eK 65 (71)
.+--|+-+|-+-||..|| .+-+..++-..|+|.++
T Consensus 23 dsLek~~~~L~~Lea~GVDNW~Gy~eA~emv~~edd~ 59 (59)
T PHA00442 23 DSLEKDNEFLKALRACGVDNWDGYMDAVEMVAEEDDK 59 (59)
T ss_pred HHHHHhhHHHHHHHHcCCcchhhHHHHHHHHhhhccC
Confidence 344588899999999998 46677777777776653
No 57
>PLN02688 pyrroline-5-carboxylate reductase
Probab=25.15 E-value=1.3e+02 Score=20.91 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 035178 35 KKEAFRKYLDASGVLDALTKVLAELYEQ 62 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTKVLV~LYEE 62 (71)
=-++....|++.|+-+++.+++.+.|+.
T Consensus 232 ~t~~~l~~l~~~g~~~~~~~a~~~~~~r 259 (266)
T PLN02688 232 TTIAGVHELEKGGFRAALMNAVVAAAKR 259 (266)
T ss_pred HHHHHHHHHHHCChHHHHHHHHHHHHHH
Confidence 3578899999999999999999988863
No 58
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.08 E-value=1.3e+02 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHh
Q 035178 35 KKEAFRKYLDASGVLDALTKVLAELYE 61 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTKVLV~LYE 61 (71)
=-++....|+++|+-++|.+.|.+.++
T Consensus 233 ~t~~gl~~l~~~g~~~~~~~a~~~~~~ 259 (267)
T PRK11880 233 TTIAALRVLEEKGLRAAVIEAVQAAAK 259 (267)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 347788999999999999999988876
No 59
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=25.02 E-value=39 Score=24.07 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHhcChH
Q 035178 31 EKEAKKEAFRKYLDASGVL 49 (71)
Q Consensus 31 ~~esKkEEFRKYLE~~GVi 49 (71)
-++...+..|+||+.+|+|
T Consensus 67 ~s~~e~~~Lr~Yl~~GGfl 85 (207)
T PF13709_consen 67 LSDEEIANLRRYLENGGFL 85 (207)
T ss_pred CCHHHHHHHHHHHHcCCEE
Confidence 4567889999999999975
No 60
>cd07358 harmonin_N_like_1 Domains similar to the N-terminal protein-binding module of harmonin. This domain is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. Harmonin (not belonging to this group) is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. This domain is also related to domains found in several other PDZ domain-containing scaffold proteins which organize supramolecular complexes. This subgroup is comprised of uncharacterized PDZ-containing proteins including a protein designated Bos taurus PDZ containing 7 which has an N-terminal PDZ domain and a C-terminal harmonin_N_like domain; however the characterized human PDZ containing 7 containing two PDZ domains does not appear to contain a harmonin_N_like domain.
Probab=24.64 E-value=48 Score=21.81 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=20.5
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDK 65 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eK 65 (71)
.+.|.+. |-+++|.+.|..|...++|
T Consensus 28 ~~~Y~~~-G~VE~LV~~Ll~iLd~p~K 53 (78)
T cd07358 28 CSRYVHE-GGVEDLVRPLLAILDRPEK 53 (78)
T ss_pred HHHHhcC-CCHHHHHHHHHHHHccHHH
Confidence 4567765 6789999999999877665
No 61
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=24.35 E-value=2.6e+02 Score=20.77 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=27.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Q 035178 25 SDTKIEEKEAKKEAFRKYLDASGVLDALTKVLAELYE 61 (71)
Q Consensus 25 ~d~~~~~~esKkEEFRKYLE~~GViDaLTKVLV~LYE 61 (71)
|+.-..+--.+=..||.||+.++-.|+...-.+..++
T Consensus 124 S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~~~~~~~ 160 (342)
T cd08915 124 SDEAAKELYEKVTKLRGYLEQASNSDNEVLQCYESID 160 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555556677899999999999988877766553
No 62
>PF09715 Plasmod_dom_1: Plasmodium protein of unknown function (Plasmod_dom_1); InterPro: IPR006410 These sequences represent an uncharacterised family consisting of a small number of hypothetical proteins of the malaria parasite Plasmodium falciparum (isolate 3D7).
Probab=24.34 E-value=34 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.3
Q ss_pred HHHhhhccccccccch
Q 035178 13 RQLINSNVQDRTSDTK 28 (71)
Q Consensus 13 ~~~~~~~~~~~~~d~~ 28 (71)
..|||+|+|++.|-..
T Consensus 19 dklId~~i~nk~s~~~ 34 (67)
T PF09715_consen 19 DKLIDNNIQNKSSFIP 34 (67)
T ss_pred HHHHccccccCCCCcH
Confidence 3689999999998763
No 63
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=23.93 E-value=68 Score=25.46 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
...=.+||++.|+++.|.+.|..--
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccc
Confidence 4445899999999999999887653
No 64
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=23.48 E-value=41 Score=21.50 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCh-HHHH
Q 035178 35 KKEAFRKYLDASGV-LDAL 52 (71)
Q Consensus 35 KkEEFRKYLE~~GV-iDaL 52 (71)
-.++|+++|++.|+ ++++
T Consensus 86 s~~ql~~~L~~~G~s~~~~ 104 (118)
T PF09312_consen 86 SVEQLRQQLEQQGISYEEY 104 (118)
T ss_dssp -HHHHHHHCHHCT--HHHH
T ss_pred CHHHHHHHHHHcCCCHHHH
Confidence 46899999999997 4443
No 65
>COG4857 Predicted kinase [General function prediction only]
Probab=23.12 E-value=92 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhc--ChHHHHHHHHHHHHh
Q 035178 32 KEAKKEAFRKYLDAS--GVLDALTKVLAELYE 61 (71)
Q Consensus 32 ~esKkEEFRKYLE~~--GViDaLTKVLV~LYE 61 (71)
...||++||.||++. .+.+++..-+.-|++
T Consensus 284 ~~~krd~~r~~L~e~i~~iw~~F~e~fs~lW~ 315 (408)
T COG4857 284 DSGKRDEMRAYLLECILDIWETFREEFSLLWR 315 (408)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345899999999974 455556555555553
No 66
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=22.66 E-value=70 Score=25.22 Aligned_cols=18 Identities=39% Similarity=0.785 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCh--HHHHHH
Q 035178 37 EAFRKYLDASGV--LDALTK 54 (71)
Q Consensus 37 EEFRKYLE~~GV--iDaLTK 54 (71)
+.|++||++.|+ ++.++.
T Consensus 35 ~~f~~~L~~~~~~~l~~~~~ 54 (300)
T COG4974 35 EDFREWLEERGITDLADATE 54 (300)
T ss_pred HHHHHHHHhcCCCChhhcCH
Confidence 578888888887 454444
No 67
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=22.58 E-value=1e+02 Score=24.82 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=23.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDK 65 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eK 65 (71)
+=++||++|..+.+.+.+++.+-++.-
T Consensus 71 iG~~l~~SGaa~~IA~~l~~~~G~k~~ 97 (441)
T PF02447_consen 71 IGKLLEESGAAERIANTLLKKFGEKRA 97 (441)
T ss_pred HHHHHHHcCHHHHHHHHHHHHcCCCcc
Confidence 347899999999999999999976543
No 68
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=22.27 E-value=73 Score=17.24 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcChHHHHH
Q 035178 35 KKEAFRKYLDASGVLDALT 53 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLT 53 (71)
.|++|++.|.+.. |+.-|
T Consensus 2 a~~~F~~lL~e~~-i~~~s 19 (51)
T PF01846_consen 2 AREAFKELLKEHK-ITPYS 19 (51)
T ss_dssp HHHHHHHHHHHTT-S-TTS
T ss_pred HHHHHHHHHHhCC-CCCCC
Confidence 5789999999988 55433
No 69
>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. Hop1 is a meiosis-specific protein, Rev7 is required for DNA damage induced mutagenesis, and MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity [, ].; GO: 0007067 mitosis; PDB: 3ABD_B 3ABE_C 4AEZ_H 2V64_A 2VFX_A 1GO4_D 2QYF_C 3GMH_B 1KLQ_A 1S2H_A ....
Probab=22.17 E-value=65 Score=21.81 Aligned_cols=28 Identities=29% Similarity=0.679 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcChHHHHHH-----HHHHHHhc
Q 035178 34 AKKEAFRKYLDASGVLDALTK-----VLAELYEQ 62 (71)
Q Consensus 34 sKkEEFRKYLE~~GViDaLTK-----VLV~LYEE 62 (71)
++-..+.+||++ ||.|+|.| +.+.+|+.
T Consensus 51 ~~~~~l~~~i~~-~v~dai~k~~L~~v~l~I~~~ 83 (208)
T PF02301_consen 51 SRAPQLIDYIEK-GVFDAIEKGYLKKVVLVIYDD 83 (208)
T ss_dssp E--HHHHHHHHH-HHHHHHHTTSEEEEEEEEE--
T ss_pred CCcHHHHHHHHh-hHHHHHhhCcceEEEEEEEec
Confidence 467889999998 99999985 44556654
No 70
>PF15615 TerB-C: TerB-C domain
Probab=22.12 E-value=1.3e+02 Score=20.23 Aligned_cols=29 Identities=7% Similarity=0.264 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhc-----ChHHHHHHHHHHHHh
Q 035178 33 EAKKEAFRKYLDAS-----GVLDALTKVLAELYE 61 (71)
Q Consensus 33 esKkEEFRKYLE~~-----GViDaLTKVLV~LYE 61 (71)
.+-|++|.++..+. |+||+|+..+...+.
T Consensus 90 ~w~r~e~~~~a~~~glm~~~~ie~INE~afd~~g 123 (144)
T PF15615_consen 90 SWSREELEDIARDHGLMPDGAIESINEKAFDYFG 123 (144)
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 35689999999998 678899888777664
No 71
>PF11709 Mit_ribos_Mrp51: Mitochondrial ribosomal protein subunit ; InterPro: IPR016712 The function of mitochondrial ribosomal small-subunit protein MRP51 is not entirely clear, but deletion of the MRP51 gene completely blocks mitochondrial gene expression [].
Probab=21.48 E-value=69 Score=24.44 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhcC
Q 035178 32 KEAKKEAFRKYLDASG 47 (71)
Q Consensus 32 ~esKkEEFRKYLE~~G 47 (71)
.-.+|.+|++||.+.-
T Consensus 155 vr~~R~eF~~~L~~~~ 170 (312)
T PF11709_consen 155 VRPLRPEFKKWLREKH 170 (312)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 4568999999997654
No 72
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.15 E-value=95 Score=22.40 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.0
Q ss_pred HHHHHhcChHHHHHHHHHHHHh
Q 035178 40 RKYLDASGVLDALTKVLAELYE 61 (71)
Q Consensus 40 RKYLE~~GViDaLTKVLV~LYE 61 (71)
=++|+++|+.|.+.+.+++...
T Consensus 65 ~~~l~~tG~~~~ia~~i~~~~~ 86 (351)
T PF03600_consen 65 GAALEETGVFDWIARKIVRKSG 86 (351)
T ss_pred HHHHHHcCChHHHHHHHHhccC
Confidence 4689999999999999988763
Done!