Query 035178
Match_columns 71
No_of_seqs 88 out of 90
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 16:12:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g36_A Protein DPY-30 homolog; 95.4 0.0049 1.7E-07 36.4 1.2 30 39-71 9-38 (55)
2 4f9k_A CAMP-dependent protein 83.5 0.25 8.5E-06 32.4 0.2 32 37-70 38-69 (95)
3 3jv1_A P22 protein; MAM33 fami 66.4 4 0.00014 27.6 2.6 28 33-60 135-162 (182)
4 1yqf_A Hypothetical protein LM 65.6 4.5 0.00015 27.7 2.8 28 33-60 156-183 (203)
5 1p32_A Mitochondrial matrix pr 63.8 4.7 0.00016 27.5 2.6 28 33-60 160-187 (209)
6 2qgu_A Probable signal peptide 57.0 12 0.00042 25.4 3.7 27 32-59 174-201 (211)
7 3qv0_A Mitochondrial acidic pr 53.2 9.5 0.00033 27.3 2.8 28 33-60 180-207 (227)
8 3hfh_A Transcription elongatio 43.1 8 0.00027 25.7 1.0 41 7-47 42-85 (190)
9 3nr7_A DNA-binding protein H-N 36.5 55 0.0019 20.2 4.1 26 31-56 56-82 (86)
10 2yf4_A MAZG-like nucleoside tr 31.6 60 0.0021 22.0 4.0 33 29-61 44-95 (154)
11 1k8v_A Neuropeptide F; moniezi 30.0 17 0.00058 20.4 0.8 12 35-46 16-27 (40)
12 3dfz_A SIRC, precorrin-2 dehyd 29.5 28 0.00094 24.1 2.0 33 9-46 190-222 (223)
13 3a4m_A L-seryl-tRNA(SEC) kinas 27.7 46 0.0016 22.1 2.8 25 35-59 222-248 (260)
14 3av0_A DNA double-strand break 27.1 73 0.0025 22.5 3.9 28 36-63 342-370 (386)
15 2cnq_A Phosphoribosylaminoimid 26.8 59 0.002 24.2 3.5 27 35-61 259-297 (306)
16 2kxw_B Sodium channel protein 26.6 35 0.0012 17.3 1.6 12 36-47 13-24 (27)
17 2kdu_B MUNC13-1, protein UNC-1 25.6 48 0.0017 18.1 2.1 19 47-65 7-25 (36)
18 2q2k_A Hypothetical protein; p 24.4 39 0.0013 20.8 1.8 14 34-47 54-67 (70)
19 3nmz_A APC variant protein; pr 24.3 60 0.0021 24.3 3.1 23 36-58 178-200 (458)
20 3ct5_A Morphogenesis protein 1 23.6 86 0.003 20.4 3.5 29 38-66 114-142 (159)
21 3ff5_A PEX14P, peroxisomal bio 22.8 42 0.0014 19.5 1.6 37 11-50 8-44 (54)
22 1xkm_B Distinctin chain B; por 21.8 42 0.0014 17.3 1.3 8 38-45 8-15 (26)
23 4a0z_A Transcription factor FA 21.5 1E+02 0.0035 20.6 3.6 29 26-54 4-34 (190)
24 2lep_A Rhomboid protease GLPG 24.9 23 0.00078 20.5 0.0 12 38-49 15-26 (69)
No 1
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=95.40 E-value=0.0049 Score=36.41 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=26.1
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCCCCCcCC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDKPFSALE 71 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eKP~dalE 71 (71)
.|.||++ -|+..|++.|..|- .+||.||++
T Consensus 9 ~R~YL~~-~V~p~L~~GL~~la--k~rP~DPi~ 38 (55)
T 3g36_A 9 TRAYLDQ-TVVPILLQGMAVLA--KERPPNPIE 38 (55)
T ss_dssp HHHHHHT-TTHHHHHHHHHHHH--HHCCSCHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHH--HhCCCCHHH
Confidence 5899985 59999999999998 688999974
No 2
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=83.48 E-value=0.25 Score=32.37 Aligned_cols=32 Identities=19% Similarity=0.377 Sum_probs=27.0
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcCCCCCCcC
Q 035178 37 EAFRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70 (71)
Q Consensus 37 EEFRKYLE~~GViDaLTKVLV~LYEE~eKP~dal 70 (71)
.+=+.||.+.||-+-|-.++|.|..+ ||+||+
T Consensus 38 ~~ce~YlqkhgI~eLLqe~tv~Ll~~--RPeDPv 69 (95)
T 4f9k_A 38 KGCELYVQLHGIQQVLKDCIVHLCIS--KPERPM 69 (95)
T ss_dssp CTTHHHHHHTCTTTTTHHHHHHHHHH--CCSCHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHH--CCCCHH
Confidence 34578999999999999999998755 888886
No 3
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=66.40 E-value=4 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=++.|.+|||.-||=+.|+..|...-
T Consensus 135 e~Lq~~l~~yLeeRGI~~~la~fl~~y~ 162 (182)
T 3jv1_A 135 DHLVDSFTSYLSARGVNDTLANFIDQFS 162 (182)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4567899999999999999999887653
No 4
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=65.62 E-value=4.5 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=++.|.+||+.-||=+.|+..|...-
T Consensus 156 e~Lq~~l~~YLeeRGI~~~la~fl~~y~ 183 (203)
T 1yqf_A 156 YDLLNCVMTYLEKRGVDEKLGEFVVLYS 183 (203)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4457899999999999999999887653
No 5
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=63.79 E-value=4.7 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=+..|.+||+.-||=+.|+..|..+-
T Consensus 160 e~Lq~~l~~yLeeRGI~~~la~fl~~y~ 187 (209)
T 1p32_A 160 WALYDHLMDFLADRGVDNTFADELVELS 187 (209)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4457899999999999999999888763
No 6
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=57.00 E-value=12 Score=25.44 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHh-cChHHHHHHHHHHH
Q 035178 32 KEAKKEAFRKYLDA-SGVLDALTKVLAEL 59 (71)
Q Consensus 32 ~esKkEEFRKYLE~-~GViDaLTKVLV~L 59 (71)
...+|.+|...|.+ .| ||.|.+-|-.-
T Consensus 174 v~tyRsqF~~~i~~~~G-id~LI~~L~~k 201 (211)
T 2qgu_A 174 SETYKNQFADVISKRGG-VGGLVQFLDER 201 (211)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 35699999999999 99 99998877653
No 7
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=53.17 E-value=9.5 Score=27.30 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=++.|.+||+.-||=+.|+..|...-
T Consensus 180 e~Lq~~l~~yLeeRGI~~~la~fl~~y~ 207 (227)
T 3qv0_A 180 EELQESLEAYLESRGVNEELASFISAYS 207 (227)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4457899999999999999999887653
No 8
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=43.10 E-value=8 Score=25.68 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=23.4
Q ss_pred hhHHHHHHHhhhccccccccchhhhhH---HHHHHHHHHHHhcC
Q 035178 7 VEHDERRQLINSNVQDRTSDTKIEEKE---AKKEAFRKYLDASG 47 (71)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~d~~~~~~e---sKkEEFRKYLE~~G 47 (71)
+...+|+|+.|.-+.+|..+-...... .-+++|+..|++++
T Consensus 42 l~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e~~ 85 (190)
T 3hfh_A 42 LNPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEEAX 85 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345789999998888876554332222 23789999999876
No 9
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=36.45 E-value=55 Score=20.20 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHhcCh-HHHHHHHH
Q 035178 31 EKEAKKEAFRKYLDASGV-LDALTKVL 56 (71)
Q Consensus 31 ~~esKkEEFRKYLE~~GV-iDaLTKVL 56 (71)
....|.++|++.|++.|+ ++-|...+
T Consensus 56 er~~Kl~~~~e~l~~~GI~~eeL~~~~ 82 (86)
T 3nr7_A 56 ERTRKLQQYREMLIADGIDPNELLNSM 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHhhh
Confidence 466799999999999998 66655443
No 10
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=31.64 E-value=60 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHH-------------h------cChHHHHHHHHHHHHh
Q 035178 29 IEEKEAKKEAFRKYLD-------------A------SGVLDALTKVLAELYE 61 (71)
Q Consensus 29 ~~~~esKkEEFRKYLE-------------~------~GViDaLTKVLV~LYE 61 (71)
........||+.-|+| . .+++|+|+.++.-+|-
T Consensus 44 ~lR~~li~EEl~E~~e~~~~~~~~~~~~~A~~~~dlve~aDAL~DllYv~~G 95 (154)
T 2yf4_A 44 RLRQTLLDEESAEVRAEIDHLLARQAAGEALSAGDLAPLAHELADLLYVTYG 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccHHHHHHHHhChhhHHHH
Confidence 3466788999999998 2 3889999998887773
No 11
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=29.97 E-value=17 Score=20.45 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhc
Q 035178 35 KKEAFRKYLDAS 46 (71)
Q Consensus 35 KkEEFRKYLE~~ 46 (71)
..++|++||.+-
T Consensus 16 s~~~l~~YL~~L 27 (40)
T 1k8v_A 16 NKAALRDYLRQI 27 (40)
T ss_dssp SCSHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 357999999874
No 12
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=29.54 E-value=28 Score=24.10 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHhc
Q 035178 9 HDERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDAS 46 (71)
Q Consensus 9 ~~~~~~~~~~~~~~~~~d~~~~~~esKkEEFRKYLE~~ 46 (71)
..+||.+...-+.+.- .....|+++|..+||+.
T Consensus 190 ~~~Rr~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~ 222 (223)
T 3dfz_A 190 KSRKHELLTEIIDDQY-----RLSLVKQREFLQQIEKY 222 (223)
T ss_dssp HHHHHHHHHHTCSHHH-----HHCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcchh-----hcChHHHHHHHHHHHhc
Confidence 4577777766554332 23455899999999864
No 13
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=27.71 E-value=46 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcCh--HHHHHHHHHHH
Q 035178 35 KKEAFRKYLDASGV--LDALTKVLAEL 59 (71)
Q Consensus 35 KkEEFRKYLE~~GV--iDaLTKVLV~L 59 (71)
-|.+|-+++...+. ++.+...||..
T Consensus 222 ~rr~fl~~~~~~~~~~~~~~~~~f~~~ 248 (260)
T 3a4m_A 222 LRKEFLKKIKKMEEVDADRVLKEFKDL 248 (260)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45556665554421 35555555543
No 14
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=27.07 E-value=73 Score=22.48 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCh-HHHHHHHHHHHHhcC
Q 035178 36 KEAFRKYLDASGV-LDALTKVLAELYEQN 63 (71)
Q Consensus 36 kEEFRKYLE~~GV-iDaLTKVLV~LYEE~ 63 (71)
.|-|++||++.++ -+-+.++|-.|.+++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 370 (386)
T 3av0_A 342 KELLVDYANRQGIDGDLVLSLYKALLNNE 370 (386)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHcCc
Confidence 5999999999876 566666666665543
No 15
>2cnq_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; ligase, phosphoribosylaminoimidazolesuccinocarboxamide (saicar) SYN ligase; HET: ADP AMZ AMP; 1.00A {Saccharomyces cerevisiae} SCOP: d.143.1.1 PDB: 1a48_A* 1obd_A* 2cnu_A* 2cnv_A* 1obg_A*
Probab=26.82 E-value=59 Score=24.17 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcC------------hHHHHHHHHHHHHh
Q 035178 35 KKEAFRKYLDASG------------VLDALTKVLAELYE 61 (71)
Q Consensus 35 KkEEFRKYLE~~G------------ViDaLTKVLV~LYE 61 (71)
-|+-||+||..+| |++.++..-+.+|+
T Consensus 259 DKq~~R~~l~~~g~~~~~~p~lp~~vv~~~~~~Y~e~~e 297 (306)
T 2cnq_A 259 DKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYE 297 (306)
T ss_dssp STHHHHHHHHHTTCTTCTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhHHhhcCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999765 77777777777665
No 16
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=26.63 E-value=35 Score=17.28 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcC
Q 035178 36 KEAFRKYLDASG 47 (71)
Q Consensus 36 kEEFRKYLE~~G 47 (71)
...||+||....
T Consensus 13 QrA~R~yl~~~~ 24 (27)
T 2kxw_B 13 QRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHhh
Confidence 457999998765
No 17
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=25.64 E-value=48 Score=18.11 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHHhcCCC
Q 035178 47 GVLDALTKVLAELYEQNDK 65 (71)
Q Consensus 47 GViDaLTKVLV~LYEE~eK 65 (71)
.-|-+++||.+.|-|..+-
T Consensus 7 ~Wlra~nKVR~qlqe~~~d 25 (36)
T 2kdu_B 7 NWLRAFNKVRMQLQEARGE 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcccCC
Confidence 4578999999999987643
No 18
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=24.36 E-value=39 Score=20.76 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcC
Q 035178 34 AKKEAFRKYLDASG 47 (71)
Q Consensus 34 sKkEEFRKYLE~~G 47 (71)
--||..|+|+|+-|
T Consensus 54 hirealrryieeig 67 (70)
T 2q2k_A 54 HIREALRRYIEEIG 67 (70)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhc
Confidence 35899999999876
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=24.32 E-value=60 Score=24.34 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHHHHHhcChHHHHHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTKVLAE 58 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKVLV~ 58 (71)
-+++|+++-+.|+|..|.++|..
T Consensus 178 ~~e~R~~i~~~G~l~~Lv~LL~~ 200 (458)
T 3nmz_A 178 DEEHRHAMNELGGLQAIAELLQV 200 (458)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHhh
Confidence 48999999999999999999864
No 20
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=23.62 E-value=86 Score=20.45 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=24.6
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHhcCCCC
Q 035178 38 AFRKYLDASGVLDALTKVLAELYEQNDKP 66 (71)
Q Consensus 38 EFRKYLE~~GViDaLTKVLV~LYEE~eKP 66 (71)
.|+++|..++=+..++.++...||-+-.+
T Consensus 114 ~~~~~~~~~~~~~~aa~~f~~~yEr~~~~ 142 (159)
T 3ct5_A 114 TFKEYIKSTKTPRELAMIFLASYERPANP 142 (159)
T ss_dssp CHHHHHHCCSCHHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCcCCCc
Confidence 37899998999999999999999766554
No 21
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=22.76 E-value=42 Score=19.50 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=17.1
Q ss_pred HHHHHhhhccccccccchhhhhHHHHHHHHHHHHhcChHH
Q 035178 11 ERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASGVLD 50 (71)
Q Consensus 11 ~~~~~~~~~~~~~~~d~~~~~~esKkEEFRKYLE~~GViD 50 (71)
.|..||.+-|.-=+...-...+-.+|. .||++.|+-+
T Consensus 8 ~Re~li~~Av~FL~dp~V~~sp~~~K~---~FL~sKGLt~ 44 (54)
T 3ff5_A 8 FREPLIATAVKFLQNSRVRQSPLATRR---AFLKKKGLTD 44 (54)
T ss_dssp HHHHHHHHHHHHHHCTTGGGSCHHHHH---HHHHHTTCCH
T ss_pred cHHHHHHHHHHHhCChhhhcCCHHHHH---HHHHHcCCCH
Confidence 355555544322222222222333454 4688888744
No 22
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=21.78 E-value=42 Score=17.30 Aligned_cols=8 Identities=50% Similarity=0.829 Sum_probs=6.0
Q ss_pred HHHHHHHh
Q 035178 38 AFRKYLDA 45 (71)
Q Consensus 38 EFRKYLE~ 45 (71)
|-|||||.
T Consensus 8 earkyleq 15 (26)
T 1xkm_B 8 EARKYLEQ 15 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56889875
No 23
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=21.50 E-value=1e+02 Score=20.57 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=18.8
Q ss_pred cchhhhhHHHHHHHHHHHHhcCh--HHHHHH
Q 035178 26 DTKIEEKEAKKEAFRKYLDASGV--LDALTK 54 (71)
Q Consensus 26 d~~~~~~esKkEEFRKYLE~~GV--iDaLTK 54 (71)
+.|+|.++.+++....+|++.|. ++.|++
T Consensus 4 ~~~~m~k~eR~~~i~~~l~~~~~~~~~~la~ 34 (190)
T 4a0z_A 4 ETLKLKKDKRREAIRQQIDSNPFITDHELSD 34 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHCCCEeHHHHHH
Confidence 45777788888888888888884 344443
No 24
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=24.91 E-value=23 Score=20.46 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=10.6
Q ss_pred HHHHHHHhcChH
Q 035178 38 AFRKYLDASGVL 49 (71)
Q Consensus 38 EFRKYLE~~GVi 49 (71)
.|..||+..||-
T Consensus 15 ~f~dyL~s~gI~ 26 (69)
T 2lep_A 15 AFVDYMATQGVI 26 (69)
Confidence 799999999973
Done!