Query 035178
Match_columns 71
No_of_seqs 88 out of 90
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 16:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b0na1 a.34.1.1 (A:74-108) Si 71.3 0.92 6.7E-05 23.9 1.5 11 35-45 18-28 (35)
2 d1yqfa1 d.25.1.1 (A:14-195) Hy 64.9 2.3 0.00017 26.9 2.8 28 33-60 135-162 (182)
3 d1p32a_ d.25.1.1 (A:) Acidic m 52.8 4.5 0.00033 25.8 2.6 28 33-60 160-187 (209)
4 d2bgca2 b.82.3.3 (A:7-137) Lis 46.1 3.6 0.00026 26.5 1.3 11 38-48 1-11 (131)
5 d2ezwa1 a.31.1.1 (A:12-61) cAM 37.1 4.8 0.00035 22.3 0.7 30 39-70 5-34 (50)
6 d1z8ma1 d.298.1.2 (A:1-88) Hyp 34.0 21 0.0015 20.1 3.3 32 36-67 11-42 (88)
7 d1udxa3 d.242.1.1 (A:341-416) 32.2 10 0.00074 21.3 1.6 19 36-54 36-54 (76)
8 d1b0nb_ a.34.1.1 (B:) SinI ant 30.0 10 0.00075 19.0 1.2 8 36-43 21-28 (31)
9 d1nyaa_ a.39.1.5 (A:) Caleryth 28.7 25 0.0018 19.2 2.9 28 35-62 120-147 (176)
10 d1k92a1 c.26.2.1 (A:1-188) Arg 26.6 15 0.0011 20.0 1.6 13 36-48 168-180 (188)
11 d3broa1 a.4.5.28 (A:3-137) Tra 25.7 34 0.0025 18.9 3.2 32 37-68 16-47 (135)
12 d1omwa1 a.91.1.1 (A:29-185) G- 25.2 18 0.0013 21.5 2.0 41 1-47 8-48 (157)
13 d1b9ha_ c.67.1.4 (A:) 3-amino- 23.8 20 0.0015 23.5 2.1 17 32-48 297-313 (384)
14 d1x6va3 c.37.1.4 (A:34-228) Ad 23.5 19 0.0014 20.1 1.8 24 26-49 170-193 (195)
15 d1dk8a_ a.91.1.1 (A:) Axin RGS 23.1 23 0.0017 20.3 2.1 20 33-52 23-42 (147)
16 d3cx5d2 f.23.11.1 (D:261-307) 22.5 15 0.0011 19.6 1.1 8 8-15 2-9 (47)
17 d1j20a1 c.26.2.1 (A:1-165) Arg 22.4 20 0.0015 18.8 1.6 14 35-48 149-162 (165)
18 d2ik8b1 a.91.1.1 (B:65-180) Re 22.3 28 0.002 18.9 2.3 19 34-52 10-28 (116)
19 d2r85a2 d.142.1.9 (A:100-334) 21.3 20 0.0015 21.3 1.6 13 36-48 2-14 (235)
No 1
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=71.27 E-value=0.92 Score=23.90 Aligned_cols=11 Identities=45% Similarity=0.872 Sum_probs=9.3
Q ss_pred HHHHHHHHHHh
Q 035178 35 KKEAFRKYLDA 45 (71)
Q Consensus 35 KkEEFRKYLE~ 45 (71)
-||+||.|||=
T Consensus 18 SK~QFrEflef 28 (35)
T d1b0na1 18 SKKQFREFLDY 28 (35)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 47999999983
No 2
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=64.92 E-value=2.3 Score=26.88 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=++.|.+||++-||=+.|+..|+.+-
T Consensus 135 e~Lq~~l~~yLeeRGId~~la~fl~~~~ 162 (182)
T d1yqfa1 135 YDLLNCVMTYLEKRGVDEKLGEFVVLYS 162 (182)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4457899999999999999999887653
No 3
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.84 E-value=4.5 Score=25.81 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDALTKVLAELY 60 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaLTKVLV~LY 60 (71)
+.=+..|-+||+.-||=..|+..|...-
T Consensus 160 e~Lq~~~~~YLeeRGI~~~la~fi~~y~ 187 (209)
T d1p32a_ 160 WALYDHLMDFLADRGVDNTFADELVELS 187 (209)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3457899999999999999999887654
No 4
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=46.13 E-value=3.6 Score=26.51 Aligned_cols=11 Identities=45% Similarity=1.168 Sum_probs=9.8
Q ss_pred HHHHHHHhcCh
Q 035178 38 AFRKYLDASGV 48 (71)
Q Consensus 38 EFRKYLE~~GV 48 (71)
+|++|||.+|+
T Consensus 1 dfk~~letngi 11 (131)
T d2bgca2 1 EFKKYLETNGI 11 (131)
T ss_dssp HHHHHHHHTTC
T ss_pred CHHHHHHhcCC
Confidence 69999999986
No 5
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=37.14 E-value=4.8 Score=22.32 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=25.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCCCCCCcC
Q 035178 39 FRKYLDASGVLDALTKVLAELYEQNDKPFSAL 70 (71)
Q Consensus 39 FRKYLE~~GViDaLTKVLV~LYEE~eKP~dal 70 (71)
-..|+.+++|=.-|-..+|.|- -.||++|+
T Consensus 5 ce~Yvq~Hniq~lLKdcIVqLC--i~rPe~P~ 34 (50)
T d2ezwa1 5 CELYVQKHNIQALLKDSIVQLC--TARPERPM 34 (50)
T ss_dssp HTTTSSTTSSHHHHHHHHHHHT--TCCCSCHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH--hcCCCCHH
Confidence 3458889999888888999997 78898886
No 6
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894 {Helicobacter pylori [TaxId: 210]}
Probab=33.98 E-value=21 Score=20.06 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhcCCCCC
Q 035178 36 KEAFRKYLDASGVLDALTKVLAELYEQNDKPF 67 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTKVLV~LYEE~eKP~ 67 (71)
+..|+++..+.-.++.+..++..|.++.+-|+
T Consensus 11 kkd~Kk~~k~~~~~~~~~~~i~~L~~~~pl~~ 42 (88)
T d1z8ma1 11 QKDFDKLLLNGFDDSVLNEVILTLRKKEPLDP 42 (88)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTSCCCCG
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHcCCCCCc
Confidence 45789988777778888889999987766554
No 7
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=32.16 E-value=10 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcChHHHHHH
Q 035178 36 KEAFRKYLDASGVLDALTK 54 (71)
Q Consensus 36 kEEFRKYLE~~GViDaLTK 54 (71)
-.-|.+.|++.||.++|-+
T Consensus 36 ~~~f~~~l~~~Gv~~~L~~ 54 (76)
T d1udxa3 36 AGYLQEVFRRQGVEAALRA 54 (76)
T ss_dssp HHHHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHHHCChHHHHHH
Confidence 4679999999999999865
No 8
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=30.00 E-value=10 Score=19.03 Aligned_cols=8 Identities=63% Similarity=0.987 Sum_probs=6.9
Q ss_pred HHHHHHHH
Q 035178 36 KEAFRKYL 43 (71)
Q Consensus 36 kEEFRKYL 43 (71)
-||.||||
T Consensus 21 peeirkyl 28 (31)
T d1b0nb_ 21 PEEIRKYL 28 (31)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 48999998
No 9
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=28.74 E-value=25 Score=19.17 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHhc
Q 035178 35 KKEAFRKYLDASGVLDALTKVLAELYEQ 62 (71)
Q Consensus 35 KkEEFRKYLE~~GViDaLTKVLV~LYEE 62 (71)
-++||++++...|+-+.-.+.++..|..
T Consensus 120 s~~E~~~~~~~~~~~~~~~~~~f~~~D~ 147 (176)
T d1nyaa_ 120 NADEFAAWLTALGMSKAEAAEAFNQVDT 147 (176)
T ss_dssp EHHHHHHHHHHTTCCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHCC
Confidence 5788999998888877777777766643
No 10
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.63 E-value=15 Score=19.99 Aligned_cols=13 Identities=15% Similarity=0.488 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCh
Q 035178 36 KEAFRKYLDASGV 48 (71)
Q Consensus 36 kEEFRKYLE~~GV 48 (71)
|+|-+.|+++.||
T Consensus 168 k~ei~~ya~~~gi 180 (188)
T d1k92a1 168 RHEMSEFMIACGF 180 (188)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 8999999999986
No 11
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=25.71 E-value=34 Score=18.90 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=26.4
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcCCCCCC
Q 035178 37 EAFRKYLDASGVLDALTKVLAELYEQNDKPFS 68 (71)
Q Consensus 37 EEFRKYLE~~GViDaLTKVLV~LYEE~eKP~d 68 (71)
..|+++|.+.|+=.+=-.||.-|++.+.+|-+
T Consensus 16 ~~~~~~l~~~glt~~q~~vL~~l~~~~~~~it 47 (135)
T d3broa1 16 TRFDIFAKKYDLTGTQMTIIDYLSRNKNKEVL 47 (135)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTTTSCCB
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCC
Confidence 46889999999977777899999998776654
No 12
>d1omwa1 a.91.1.1 (A:29-185) G-protein coupled receptor kinase 2, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.15 E-value=18 Score=21.46 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=21.8
Q ss_pred CccchhhhHHHHHHHhhhccccccccchhhhhHHHHHHHHHHHHhcC
Q 035178 1 MPLQQSVEHDERRQLINSNVQDRTSDTKIEEKEAKKEAFRKYLDASG 47 (71)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~esKkEEFRKYLE~~G 47 (71)
+|...+|.|.-.+.-.+-+. +.. ....-=++-||.||+..+
T Consensus 8 ~p~~~~v~~~~~~~~~~~sf-----~~l-l~~~iG~~lFr~FL~~e~ 48 (157)
T d1omwa1 8 EPSIRSVMQKYLEDRGEVTF-----EKI-FSQKLGYLLFRDFCLKHL 48 (157)
T ss_dssp CGGGHHHHHHHHHHTTCCSH-----HHH-HTSHHHHHHHHHHHHHHC
T ss_pred CCCccchhHHHHHhhccCCH-----HHH-HcCHHHHHHHHHHHHhhc
Confidence 46777888755443222111 111 112234779999998754
No 13
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
Probab=23.76 E-value=20 Score=23.48 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHhcCh
Q 035178 32 KEAKKEAFRKYLDASGV 48 (71)
Q Consensus 32 ~esKkEEFRKYLE~~GV 48 (71)
...+|++|.+||.+.||
T Consensus 297 ~~~~Rd~l~~~L~~~GI 313 (384)
T d1b9ha_ 297 TEERRNALVDRLVEAGL 313 (384)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHCCC
Confidence 45689999999999997
No 14
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.52 E-value=19 Score=20.06 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=17.5
Q ss_pred cchhhhhHHHHHHHHHHHHhcChH
Q 035178 26 DTKIEEKEAKKEAFRKYLDASGVL 49 (71)
Q Consensus 26 d~~~~~~esKkEEFRKYLE~~GVi 49 (71)
|+..++.+.=-++..+||++.|+|
T Consensus 170 dT~~~s~ee~~~~Il~~l~~~~~i 193 (195)
T d1x6va3 170 KTDSCDVNDCVQQVVELLQERDIV 193 (195)
T ss_dssp CTTTSCHHHHHHHHHHHHHHTTSS
T ss_pred ECCCCCHHHHHHHHHHHHHHCcCC
Confidence 444445566678889999999886
No 15
>d1dk8a_ a.91.1.1 (A:) Axin RGS-homologous domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.11 E-value=23 Score=20.27 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcChHHHH
Q 035178 33 EAKKEAFRKYLDASGVLDAL 52 (71)
Q Consensus 33 esKkEEFRKYLE~~GViDaL 52 (71)
..-..-|++||++.|..+-|
T Consensus 23 ~~~~~~F~~FL~~~~~~e~l 42 (147)
T d1dk8a_ 23 QDGISLFRTFLKQEGCADLL 42 (147)
T ss_dssp HHHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHH
Confidence 34678999999999987654
No 16
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.50 E-value=15 Score=19.59 Aligned_cols=8 Identities=75% Similarity=1.282 Sum_probs=5.7
Q ss_pred hHHHHHHH
Q 035178 8 EHDERRQL 15 (71)
Q Consensus 8 ~~~~~~~~ 15 (71)
|||||..+
T Consensus 2 EhDeRK~m 9 (47)
T d3cx5d2 2 EHDERKRL 9 (47)
T ss_dssp THHHHHHH
T ss_pred chhHHHHH
Confidence 78888653
No 17
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=22.37 E-value=20 Score=18.76 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCh
Q 035178 35 KKEAFRKYLDASGV 48 (71)
Q Consensus 35 KkEEFRKYLE~~GV 48 (71)
.|+|.+.|+++.|+
T Consensus 149 ~k~ei~~ya~~~~i 162 (165)
T d1j20a1 149 GRKEMIAYAEAHGI 162 (165)
T ss_dssp SHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCC
Confidence 58999999999885
No 18
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=28 Score=18.89 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcChHHHH
Q 035178 34 AKKEAFRKYLDASGVLDAL 52 (71)
Q Consensus 34 sKkEEFRKYLE~~GViDaL 52 (71)
.-.+-|++||++.|-.+-|
T Consensus 10 ~~~~~F~~FL~~~~~~e~L 28 (116)
T d2ik8b1 10 NGVAAFHAFLKTEFSEENL 28 (116)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhHhcCHHHH
Confidence 4578999999998876543
No 19
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=21.32 E-value=20 Score=21.32 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCh
Q 035178 36 KEAFRKYLDASGV 48 (71)
Q Consensus 36 kEEFRKYLE~~GV 48 (71)
|.-||++|+++||
T Consensus 2 K~~~k~~l~~~Gi 14 (235)
T d2r85a2 2 RNLERKWLKKAGI 14 (235)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 5668888888885
Done!