Query 035183
Match_columns 71
No_of_seqs 104 out of 132
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tgu_G UQCRQ, mitochondrial ub 38.6 45 0.0015 19.7 3.7 22 32-54 39-60 (81)
2 1v54_I STA, cytochrome C oxida 28.4 56 0.0019 19.0 3.0 28 29-56 16-43 (73)
3 3arc_X Photosystem II PSBX pro 26.7 52 0.0018 17.1 2.3 19 30-48 5-23 (39)
4 1v54_G Cytochrome C oxidase po 26.1 87 0.003 18.6 3.6 23 33-55 14-36 (85)
5 1ifk_A Inovirus; helical virus 24.1 95 0.0032 17.0 3.2 26 33-58 20-45 (51)
6 1xrd_A LH-1, light-harvesting 23.8 58 0.002 17.9 2.3 20 29-48 8-27 (52)
7 1ifl_A Inovirus; helical virus 23.2 1E+02 0.0034 17.1 3.2 26 33-58 22-47 (53)
8 3bz1_X Photosystem II PSBX pro 19.8 1.2E+02 0.0041 16.6 3.0 20 29-48 14-33 (50)
9 2y69_G Cytochrome C oxidase po 18.9 1.4E+02 0.0049 18.1 3.6 23 33-55 26-48 (97)
10 2l8s_A Integrin alpha-1; trans 17.1 1.3E+02 0.0043 16.6 2.8 19 36-54 14-32 (54)
No 1
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=38.59 E-value=45 Score=19.68 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=13.4
Q ss_pred hhHHHHHHHHhHHhHHhHhHhhh
Q 035183 32 RNLAIVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 32 rt~~~~~~~~v~vP~~~yy~~~~ 54 (71)
|.+.-.+++ +++|++++|.+++
T Consensus 39 RR~~~q~l~-v~pPfi~~Y~i~~ 60 (81)
T 3tgu_G 39 RRFSSQVFK-VAPPFLGAYLLYS 60 (81)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHhhhH-hhHHHHHHHHHHH
Confidence 334444444 4588888777665
No 2
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=28.44 E-value=56 Score=18.96 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=20.3
Q ss_pred ecchhHHHHHHHHhHHhHHhHhHhhhhh
Q 035183 29 WTRRNLAIVGLFGIAVPVFIYKGIVKEF 56 (71)
Q Consensus 29 ~Tprt~~~~~~~~v~vP~~~yy~~~~~~ 56 (71)
-.++++..+++..++++++++++...-+
T Consensus 16 ~lr~~i~~a~~lsl~~~~~~k~~v~~pR 43 (73)
T 1v54_I 16 RLRFHIVGAFMVSLGFATFYKFAVAEKR 43 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3567888888888888888877544433
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=26.74 E-value=52 Score=17.15 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHhHHhHHh
Q 035183 30 TRRNLAIVGLFGIAVPVFI 48 (71)
Q Consensus 30 Tprt~~~~~~~~v~vP~~~ 48 (71)
+-+|.+.++++|.+|-+++
T Consensus 5 SL~nFl~Sl~aG~vvvv~i 23 (39)
T 3arc_X 5 SLKGFFIGLLSGAVVLGLT 23 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4468888999988766553
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=26.11 E-value=87 Score=18.63 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=16.0
Q ss_pred hHHHHHHHHhHHhHHhHhHhhhh
Q 035183 33 NLAIVGLFGIAVPVFIYKGIVKE 55 (71)
Q Consensus 33 t~~~~~~~~v~vP~~~yy~~~~~ 55 (71)
..|.-+-+.+++|+++...+..-
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y 36 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSW 36 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677888999887765553
No 5
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=24.11 E-value=95 Score=17.05 Aligned_cols=26 Identities=15% Similarity=-0.079 Sum_probs=20.0
Q ss_pred hHHHHHHHHhHHhHHhHhHhhhhhhh
Q 035183 33 NLAIVGLFGIAVPVFIYKGIVKEFHM 58 (71)
Q Consensus 33 t~~~~~~~~v~vP~~~yy~~~~~~~~ 58 (71)
|-.++-.|++++++....+..+=|++
T Consensus 20 t~~ig~~W~vvv~vv~a~~gIKlFKK 45 (51)
T 1ifk_A 20 TEMSGYAWALVVLVVGATVGIKLFKK 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheeeehhhhhHHHhh
Confidence 56788899999999888776655543
No 6
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=23.81 E-value=58 Score=17.94 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=13.3
Q ss_pred ecchhHHHHHHHHhHHhHHh
Q 035183 29 WTRRNLAIVGLFGIAVPVFI 48 (71)
Q Consensus 29 ~Tprt~~~~~~~~v~vP~~~ 48 (71)
|+||+++.+....+++.+++
T Consensus 8 fDPrr~Lva~~~fl~vlAl~ 27 (52)
T 1xrd_A 8 FDPRQALVGLATFLFVLALL 27 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHHHHHHH
Confidence 57888887766555555544
No 7
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=23.18 E-value=1e+02 Score=17.07 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=20.0
Q ss_pred hHHHHHHHHhHHhHHhHhHhhhhhhh
Q 035183 33 NLAIVGLFGIAVPVFIYKGIVKEFHM 58 (71)
Q Consensus 33 t~~~~~~~~v~vP~~~yy~~~~~~~~ 58 (71)
|-.++-.|++++++....+..+=|++
T Consensus 22 t~~ig~~W~vvv~vv~a~~gIklFKK 47 (53)
T 1ifl_A 22 IDLISQTWPVVTTVVVAGLVIRLFKK 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheeeechhhhhhhhh
Confidence 56788899999999888776655543
No 8
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=19.83 E-value=1.2e+02 Score=16.57 Aligned_cols=20 Identities=20% Similarity=-0.003 Sum_probs=14.7
Q ss_pred ecchhHHHHHHHHhHHhHHh
Q 035183 29 WTRRNLAIVGLFGIAVPVFI 48 (71)
Q Consensus 29 ~Tprt~~~~~~~~v~vP~~~ 48 (71)
++-+|.+.++++|++|-+++
T Consensus 14 pSL~NFl~SlvaG~vVvv~i 33 (50)
T 3bz1_X 14 PSLKGFFIGLLSGAVVLGLT 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45578889999988766553
No 9
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=18.94 E-value=1.4e+02 Score=18.10 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=15.9
Q ss_pred hHHHHHHHHhHHhHHhHhHhhhh
Q 035183 33 NLAIVGLFGIAVPVFIYKGIVKE 55 (71)
Q Consensus 33 t~~~~~~~~v~vP~~~yy~~~~~ 55 (71)
..|.-+-+.+++|+++...+..-
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y 48 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSW 48 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888998887765543
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=17.10 E-value=1.3e+02 Score=16.58 Aligned_cols=19 Identities=11% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHHHHHhHHhHHhHhHhhh
Q 035183 36 IVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 36 ~~~~~~v~vP~~~yy~~~~ 54 (71)
.+++-|+++.+++-++.++
T Consensus 14 ~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444443
Done!