Query 035183
Match_columns 71
No_of_seqs 104 out of 132
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 16:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035183.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035183hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjg_ f.23.13.1 (G:) Ubiquin 53.9 6 0.00043 22.0 3.0 22 32-54 39-60 (75)
2 d3cx5h1 f.23.13.1 (H:2-94) Ubi 52.2 2.7 0.0002 24.4 1.3 35 31-66 48-86 (93)
3 d2ieaa3 c.48.1.1 (A:701-886) P 16.1 19 0.0014 22.2 0.6 23 20-42 134-156 (186)
4 d1v54h_ a.51.1.1 (H:) Cytochro 14.8 21 0.0015 19.9 0.4 17 6-22 56-72 (79)
5 d2ivxa2 a.74.1.1 (A:150-262) C 13.3 50 0.0036 18.6 1.9 35 10-44 19-56 (113)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 12.0 1E+02 0.0075 16.1 3.1 22 34-55 11-32 (158)
7 d1jkwa2 a.74.1.1 (A:162-287) C 11.5 79 0.0057 17.9 2.5 33 15-47 30-64 (126)
8 d2qkwa1 a.8.8.1 (A:29-129) Avi 10.9 55 0.004 18.4 1.5 13 11-23 83-95 (101)
9 d1v54g_ f.23.2.1 (G:) Mitochon 10.7 1E+02 0.0076 16.8 2.7 21 34-54 15-35 (84)
10 d1gx5a_ e.8.1.4 (A:) Viral RNA 9.5 90 0.0065 22.7 2.6 43 26-68 399-441 (530)
No 1
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=53.93 E-value=6 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=16.3
Q ss_pred hhHHHHHHHHhHHhHHhHhHhhh
Q 035183 32 RNLAIVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 32 rt~~~~~~~~v~vP~~~yy~~~~ 54 (71)
|.+...++++ ++|+++.|.+++
T Consensus 39 RR~~~~~l~v-~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 39 RRTRACILRV-APPFVAFYLVYT 60 (75)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhHHhceEE-cCHHHHHHHHHH
Confidence 4556666666 699999888776
No 2
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.21 E-value=2.7 Score=24.45 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred chhHHHHHHHHhHHhHHhHhHhhhh---hhhh-hhhcCCC
Q 035183 31 RRNLAIVGLFGIAVPVFIYKGIVKE---FHMQ-DEDAGRP 66 (71)
Q Consensus 31 prt~~~~~~~~v~vP~~~yy~~~~~---~~~~-d~~~G~~ 66 (71)
-|.+...++| +++|++++|.++.- .++. .+++||.
T Consensus 48 ~RR~r~q~ly-v~PPfi~~Y~iy~Wa~~~ne~l~sK~Gr~ 86 (93)
T d3cx5h1 48 FRRFKSQFLY-VLIPAGIYWYWWKNGNEYNEFLYSKAGRE 86 (93)
T ss_dssp SHHHHTTHHH-HHHHHHHHHHHHHHHHHHHHHHTSGGGHH
T ss_pred HHhhhhhceE-EcchHHHHHHHHHHHHHHHHHHHcccCHH
Confidence 3455555666 45899998887642 2222 3477664
No 3
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}
Probab=16.10 E-value=19 Score=22.18 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.2
Q ss_pred hhccccceeecchhHHHHHHHHh
Q 035183 20 RETLEHNFRWTRRNLAIVGLFGI 42 (71)
Q Consensus 20 ren~~~~FR~Tprt~~~~~~~~v 42 (71)
++.+|++|.+|+.+....++-.+
T Consensus 134 ~~~L~~~Fgi~~~~Iv~aAl~~L 156 (186)
T d2ieaa3 134 RENLRHHFEVDASYVVVAALGEL 156 (186)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHH
Confidence 57899999999999988776554
No 4
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.78 E-value=21 Score=19.90 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=13.7
Q ss_pred CCccCHHHHHHHHhhhc
Q 035183 6 EANKNRFIEEWGAARET 22 (71)
Q Consensus 6 ~l~~dpalerw~~~ren 22 (71)
+|=+...||+|...|+|
T Consensus 56 sLCP~~WiekWdeqr~~ 72 (79)
T d1v54h_ 56 SLCPISWVSTWDDRRAE 72 (79)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHc
Confidence 45567889999999985
No 5
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.29 E-value=50 Score=18.64 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=26.9
Q ss_pred CHHHHHHHHhhhccc-cc--eeecchhHHHHHHHHhHH
Q 035183 10 NRFIEEWGAARETLE-HN--FRWTRRNLAIVGLFGIAV 44 (71)
Q Consensus 10 dpalerw~~~ren~~-~~--FR~Tprt~~~~~~~~v~v 44 (71)
|=+=..|+.+++..+ .. =+|.|.+...+.+|..+-
T Consensus 19 ~l~q~AW~~lnDs~r~T~lcL~~~P~~IA~a~I~LA~~ 56 (113)
T d2ivxa2 19 DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACK 56 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeeecCcHHHHHHHHHHHHH
Confidence 334457999998665 44 489999999999998873
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=11.99 E-value=1e+02 Score=16.11 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHhHHhHhHhhhh
Q 035183 34 LAIVGLFGIAVPVFIYKGIVKE 55 (71)
Q Consensus 34 ~~~~~~~~v~vP~~~yy~~~~~ 55 (71)
+.++++-++++|.+.-++-+..
T Consensus 11 aIIgILaaia~P~~~~~~~~a~ 32 (158)
T d2pila_ 11 AIVGILAAVALPAYQDYTARAQ 32 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888777665443
No 7
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.47 E-value=79 Score=17.86 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=26.1
Q ss_pred HHHHhhhc--cccceeecchhHHHHHHHHhHHhHH
Q 035183 15 EWGAARET--LEHNFRWTRRNLAIVGLFGIAVPVF 47 (71)
Q Consensus 15 rw~~~ren--~~~~FR~Tprt~~~~~~~~v~vP~~ 47 (71)
.|+.+.+. .--.|.+||..+.+++++.......
T Consensus 30 a~~~lnds~~Td~~l~y~P~qIalaal~~a~~~~~ 64 (126)
T d1jkwa2 30 ADDFLNRIALTDAYLLYTPSQIALTAILSSASRAG 64 (126)
T ss_dssp HHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCeeeeeCHHHHHHHHHHHHHHHcC
Confidence 57777763 3447999999999999998887765
No 8
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=10.88 E-value=55 Score=18.42 Aligned_cols=13 Identities=38% Similarity=0.785 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhcc
Q 035183 11 RFIEEWGAARETL 23 (71)
Q Consensus 11 palerw~~~ren~ 23 (71)
.||..|..|||-+
T Consensus 83 sai~dwsdmreal 95 (101)
T d2qkwa1 83 SAITDWSDMREAL 95 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHH
Confidence 5899999999854
No 9
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.71 E-value=1e+02 Score=16.81 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHhHHhHhHhhh
Q 035183 34 LAIVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 34 ~~~~~~~~v~vP~~~yy~~~~ 54 (71)
.|..+.|.+++|+++...+..
T Consensus 15 lWkkis~~va~P~i~l~~~n~ 35 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNS 35 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888665443
No 10
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus [TaxId: 11103]}
Probab=9.54 E-value=90 Score=22.66 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=28.1
Q ss_pred ceeecchhHHHHHHHHhHHhHHhHhHhhhhhhhhhhhcCCCcc
Q 035183 26 NFRWTRRNLAIVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYR 68 (71)
Q Consensus 26 ~FR~Tprt~~~~~~~~v~vP~~~yy~~~~~~~~~d~~~G~~~r 68 (71)
+=||+|-++|++.+-+-.+-..+=+++-+-|=...-..|+|++
T Consensus 399 ~~~w~pv~SWlg~Ii~y~~~~~vr~vl~~h~~~~~~~~~~~~~ 441 (530)
T d1gx5a_ 399 TARHTPVNSWLGNIIMYAPTLWARMILMTHFFSILLAQEQLEK 441 (530)
T ss_dssp HHSCCSSCHHHHHHHHTTTSHHHHHTHHHHHHHHHHHTTCTTC
T ss_pred hcCCCcHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccCCccc
Confidence 4479999999999988866555556666654333334455544
Done!