BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035185
         (71 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8SPU7|ACHA5_BOVIN Neuronal acetylcholine receptor subunit alpha-5 OS=Bos taurus
           GN=CHRNA5 PE=2 SV=1
          Length = 475

 Score = 32.3 bits (72), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 6   EANKNRFIEEWGAARENLEHNFRWTRRNLALVGLFGIAVPVFIYK--GIVKEFHMQDED 62
           E +    +E+W    + L+  F WT   +++VG  G+ VPV IYK   I+   H+ +E+
Sbjct: 417 ETDVREVVEDWKFIAQVLDRMFLWTFLLVSVVGSLGLFVPV-IYKWANIIVPIHIGNEN 474


>sp|Q5IS51|ACHA5_PANTR Neuronal acetylcholine receptor subunit alpha-5 OS=Pan troglodytes
           GN=CHRNA5 PE=2 SV=1
          Length = 468

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6   EANKNRFIEEWGAARENLEHNFRWTRRNLALVGLFGIAVPVFIYK 50
           E +    +E+W    + L+  F WT   +++VG  G+ VPV IYK
Sbjct: 410 ENDVREVVEDWKFIAQVLDRMFLWTFLFVSIVGSLGLFVPV-IYK 453


>sp|P30532|ACHA5_HUMAN Neuronal acetylcholine receptor subunit alpha-5 OS=Homo sapiens
           GN=CHRNA5 PE=2 SV=2
          Length = 468

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6   EANKNRFIEEWGAARENLEHNFRWTRRNLALVGLFGIAVPVFIYK 50
           E +    +E+W    + L+  F WT   +++VG  G+ VPV IYK
Sbjct: 410 ENDVREVVEDWKFIAQVLDRMFLWTFLFVSIVGSLGLFVPV-IYK 453


>sp|Q2MKA5|ACHA5_MOUSE Neuronal acetylcholine receptor subunit alpha-5 OS=Mus musculus
           GN=Chrna5 PE=2 SV=1
          Length = 467

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6   EANKNRFIEEWGAARENLEHNFRWTRRNLALVGLFGIAVPVFIYK 50
           E +    +E+W    + L+  F WT   ++++G  G+ VPV IYK
Sbjct: 409 ENDVREVVEDWKFIAQVLDRMFLWTFLLVSIIGTLGLFVPV-IYK 452


>sp|P20420|ACHA5_RAT Neuronal acetylcholine receptor subunit alpha-5 OS=Rattus
           norvegicus GN=Chrna5 PE=2 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6   EANKNRFIEEWGAARENLEHNFRWTRRNLALVGLFGIAVPVFIYK 50
           E +    +E+W    + L+  F WT   ++++G  G+ VPV IYK
Sbjct: 394 ENDVREVVEDWKFIAQVLDRMFLWTFLLVSIIGTLGLFVPV-IYK 437


>sp|Q7NEF7|RL22_GLOVI 50S ribosomal protein L22 OS=Gloeobacter violaceus (strain PCC
           7421) GN=rplV PE=3 SV=1
          Length = 116

 Score = 30.0 bits (66), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 18  AARENLEHNFRWTRRNLALVGLFGIAVPVFIYKGIVKEFHMQDEDAGRPYRK 69
           +A  N EHNF   RR L +   F    PV       K F   D    RP RK
Sbjct: 55  SAAANAEHNFSLDRRALVVSTAFADGGPVL------KRFRAGDRGRARPVRK 100


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.143    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,594,731
Number of Sequences: 539616
Number of extensions: 938462
Number of successful extensions: 2629
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 6
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)