Query 035185
Match_columns 71
No_of_seqs 101 out of 127
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_H Cytochrome B-C1 complex 66.6 2.8 9.7E-05 25.8 1.7 26 41-66 57-86 (93)
2 3tgu_G UQCRQ, mitochondrial ub 45.9 33 0.0011 20.2 4.0 21 33-54 40-60 (81)
3 2jo1_A Phospholemman; FXYD1, N 38.7 54 0.0019 19.2 4.1 27 27-53 9-35 (72)
4 1pp9_G Ubiquinol-cytochrome C 36.8 60 0.002 19.0 4.1 17 36-53 43-59 (81)
5 1ifl_A Inovirus; helical virus 36.6 51 0.0017 18.3 3.5 28 33-60 22-49 (53)
6 1ifk_A Inovirus; helical virus 34.0 60 0.0021 17.9 3.5 28 33-60 20-47 (51)
7 1xrd_A LH-1, light-harvesting 22.8 64 0.0022 17.8 2.3 21 29-49 8-28 (52)
8 1v54_I STA, cytochrome C oxida 21.7 98 0.0034 17.9 3.1 25 29-53 16-40 (73)
9 1v54_G Cytochrome C oxidase po 21.6 1.3E+02 0.0045 17.8 3.8 22 33-54 14-35 (85)
10 3arc_X Photosystem II PSBX pro 21.3 1E+02 0.0034 16.0 2.8 20 30-49 5-24 (39)
No 1
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=66.60 E-value=2.8 Score=25.75 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=17.4
Q ss_pred HhHHHHHhHHHHh----hhhhhhhhhcCCc
Q 035185 41 GIAVPVFIYKGIV----KEFHMQDEDAGRP 66 (71)
Q Consensus 41 ~~~vP~~~yy~~~----~~~~~~d~~~G~~ 66 (71)
-+++|+++.|+++ .++....+|+|+.
T Consensus 57 ~v~pPfv~~Y~i~~Wa~~~~e~l~~KaG~~ 86 (93)
T 3cx5_H 57 YVLIPAGIYWYWWKNGNEYNEFLYSKAGRE 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSGGGHH
T ss_pred EEechHhHHHHHHHHHHHHHHHHhcccchh
Confidence 4468998888886 3444446777764
No 2
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=45.92 E-value=33 Score=20.25 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=13.5
Q ss_pred hHHHHHHHHhHHHHHhHHHHhh
Q 035185 33 NLALVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 33 t~~~~~~~~~~vP~~~yy~~~~ 54 (71)
.+.-.+++ +++|++++|.++.
T Consensus 40 R~~~q~l~-v~pPfi~~Y~i~~ 60 (81)
T 3tgu_G 40 RFSSQVFK-VAPPFLGAYLLYS 60 (81)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHhhhH-hhHHHHHHHHHHH
Confidence 33444444 5589988888873
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=38.67 E-value=54 Score=19.24 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=19.0
Q ss_pred eeecchhHHHHHHHHhHHHHHhHHHHh
Q 035185 27 FRWTRRNLALVGLFGIAVPVFIYKGIV 53 (71)
Q Consensus 27 FR~Tprt~~~~~~~~~~vP~~~yy~~~ 53 (71)
|-+.-.|..++.+-..+|.++++.++.
T Consensus 9 F~YDY~tLRiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 9 FTYDYQSLQIGGLVIAGILFILGILIV 35 (72)
T ss_dssp GGCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHhhccchHHHHHHHHHHHHHH
Confidence 556667788877777777777776553
No 4
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=36.79 E-value=60 Score=19.05 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHhHHHHh
Q 035185 36 LVGLFGIAVPVFIYKGIV 53 (71)
Q Consensus 36 ~~~~~~~~vP~~~yy~~~ 53 (71)
-.++ -+++|+++.|+++
T Consensus 43 ~~~l-~v~pPfv~~Y~i~ 59 (81)
T 1pp9_G 43 ACIL-RVAPPFVAFYLVY 59 (81)
T ss_dssp HHHH-HHHHHHHHHHHHH
T ss_pred hcce-eeehhHHHHHHHH
Confidence 3344 4568988888887
No 5
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=36.64 E-value=51 Score=18.30 Aligned_cols=28 Identities=7% Similarity=0.072 Sum_probs=22.9
Q ss_pred hHHHHHHHHhHHHHHhHHHHhhhhhhhh
Q 035185 33 NLALVGLFGIAVPVFIYKGIVKEFHMQD 60 (71)
Q Consensus 33 t~~~~~~~~~~vP~~~yy~~~~~~~~~d 60 (71)
|-.++-.|++++++....+..+-|++--
T Consensus 22 t~~ig~~W~vvv~vv~a~~gIklFKKf~ 49 (53)
T 1ifl_A 22 IDLISQTWPVVTTVVVAGLVIRLFKKFS 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheeeechhhhhhhhhcc
Confidence 5678889999999999988877776643
No 6
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=33.99 E-value=60 Score=17.87 Aligned_cols=28 Identities=14% Similarity=-0.142 Sum_probs=22.6
Q ss_pred hHHHHHHHHhHHHHHhHHHHhhhhhhhh
Q 035185 33 NLALVGLFGIAVPVFIYKGIVKEFHMQD 60 (71)
Q Consensus 33 t~~~~~~~~~~vP~~~yy~~~~~~~~~d 60 (71)
|-.++-.|++++++....+..+-|++--
T Consensus 20 t~~ig~~W~vvv~vv~a~~gIKlFKKf~ 47 (51)
T 1ifk_A 20 TEMSGYAWALVVLVVGATVGIKLFKKFV 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheeeehhhhhHHHhhhc
Confidence 5678889999999999888877776643
No 7
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=22.83 E-value=64 Score=17.78 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=13.9
Q ss_pred ecchhHHHHHHHHhHHHHHhH
Q 035185 29 WTRRNLALVGLFGIAVPVFIY 49 (71)
Q Consensus 29 ~Tprt~~~~~~~~~~vP~~~y 49 (71)
|.||+++.+....+++.+++-
T Consensus 8 fDPrr~Lva~~~fl~vlAl~I 28 (52)
T 1xrd_A 8 FDPRQALVGLATFLFVLALLI 28 (52)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHHHHHHHH
Confidence 578888877666555555543
No 8
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=21.72 E-value=98 Score=17.90 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=19.2
Q ss_pred ecchhHHHHHHHHhHHHHHhHHHHh
Q 035185 29 WTRRNLALVGLFGIAVPVFIYKGIV 53 (71)
Q Consensus 29 ~Tprt~~~~~~~~~~vP~~~yy~~~ 53 (71)
-.++++..+++..++++++++++..
T Consensus 16 ~lr~~i~~a~~lsl~~~~~~k~~v~ 40 (73)
T 1v54_I 16 RLRFHIVGAFMVSLGFATFYKFAVA 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888877654
No 9
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=21.64 E-value=1.3e+02 Score=17.81 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=15.5
Q ss_pred hHHHHHHHHhHHHHHhHHHHhh
Q 035185 33 NLALVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 33 t~~~~~~~~~~vP~~~yy~~~~ 54 (71)
..|.-+-+.+++|+++...+..
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~ 35 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNS 35 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667788899988766653
No 10
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=21.25 E-value=1e+02 Score=16.03 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=14.7
Q ss_pred cchhHHHHHHHHhHHHHHhH
Q 035185 30 TRRNLALVGLFGIAVPVFIY 49 (71)
Q Consensus 30 Tprt~~~~~~~~~~vP~~~y 49 (71)
+-+|.+.++++|++|-+++.
T Consensus 5 SL~nFl~Sl~aG~vvvv~i~ 24 (39)
T 3arc_X 5 SLKGFFIGLLSGAVVLGLTF 24 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44678889999987766643
Done!