Query 035185
Match_columns 71
No_of_seqs 101 out of 127
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 16:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5h1 f.23.13.1 (H:2-94) Ubi 68.1 1.2 8.6E-05 26.1 1.7 35 32-67 49-87 (93)
2 d1ppjg_ f.23.13.1 (G:) Ubiquin 64.6 3.5 0.00025 23.0 3.2 22 32-54 39-60 (75)
3 d2ieaa3 c.48.1.1 (A:701-886) P 15.1 21 0.0015 22.0 0.6 23 20-42 134-156 (186)
4 d1v54h_ a.51.1.1 (H:) Cytochro 15.1 27 0.002 19.4 1.1 17 6-22 56-72 (79)
5 d2ivxa2 a.74.1.1 (A:150-262) C 14.8 43 0.0032 18.9 2.0 34 10-43 19-55 (113)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 13.0 1E+02 0.0074 16.2 3.4 20 34-53 11-30 (158)
7 d1jkwa2 a.74.1.1 (A:162-287) C 11.4 80 0.0058 17.8 2.5 33 15-47 30-64 (126)
8 d2qkwa1 a.8.8.1 (A:29-129) Avi 11.1 54 0.004 18.4 1.6 13 11-23 83-95 (101)
9 d1v54g_ f.23.2.1 (G:) Mitochon 10.7 1.1E+02 0.0083 16.6 2.9 20 34-53 15-34 (84)
10 d1mkma1 a.4.5.33 (A:1-75) Tran 8.8 67 0.0049 16.3 1.3 29 12-40 43-71 (75)
No 1
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=68.11 E-value=1.2 Score=26.11 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=21.8
Q ss_pred hhHHHHHHHHhHHHHHhHHHHh---hhhh-hhhhhcCCcc
Q 035185 32 RNLALVGLFGIAVPVFIYKGIV---KEFH-MQDEDAGRPY 67 (71)
Q Consensus 32 rt~~~~~~~~~~vP~~~yy~~~---~~~~-~~d~~~G~~~ 67 (71)
|.+...++| +++|++++|.++ .+.+ ....|+||.|
T Consensus 49 RR~r~q~ly-v~PPfi~~Y~iy~Wa~~~ne~l~sK~Gr~e 87 (93)
T d3cx5h1 49 RRFKSQFLY-VLIPAGIYWYWWKNGNEYNEFLYSKAGREE 87 (93)
T ss_dssp HHHHTTHHH-HHHHHHHHHHHHHHHHHHHHHHTSGGGHHH
T ss_pred HhhhhhceE-EcchHHHHHHHHHHHHHHHHHHHcccCHHH
Confidence 444555555 559999998887 2333 3367777653
No 2
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=64.56 E-value=3.5 Score=23.01 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=16.4
Q ss_pred hhHHHHHHHHhHHHHHhHHHHhh
Q 035185 32 RNLALVGLFGIAVPVFIYKGIVK 54 (71)
Q Consensus 32 rt~~~~~~~~~~vP~~~yy~~~~ 54 (71)
|.++..++++ ++|+++.|.++.
T Consensus 39 RR~~~~~l~v-~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 39 RRTRACILRV-APPFVAFYLVYT 60 (75)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhHHhceEE-cCHHHHHHHHHH
Confidence 4556666666 699999999984
No 3
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]}
Probab=15.14 E-value=21 Score=21.98 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.2
Q ss_pred hhccccceeecchhHHHHHHHHh
Q 035185 20 RENLEHNFRWTRRNLALVGLFGI 42 (71)
Q Consensus 20 ren~~~~FR~Tprt~~~~~~~~~ 42 (71)
++.+|++|.+|+.+....++-.+
T Consensus 134 ~~~L~~~Fgi~~~~Iv~aAl~~L 156 (186)
T d2ieaa3 134 RENLRHHFEVDASYVVVAALGEL 156 (186)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHH
Confidence 57899999999999988776654
No 4
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.13 E-value=27 Score=19.36 Aligned_cols=17 Identities=12% Similarity=0.382 Sum_probs=13.7
Q ss_pred CCccCHHHHHHHHHhhc
Q 035185 6 EANKNRFIEEWGAAREN 22 (71)
Q Consensus 6 ~l~~dPalerw~~~ren 22 (71)
+|=+...||+|..-|+|
T Consensus 56 sLCP~~WiekWdeqr~~ 72 (79)
T d1v54h_ 56 SLCPISWVSTWDDRRAE 72 (79)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHc
Confidence 45567889999999985
No 5
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.83 E-value=43 Score=18.94 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhhccc-cc--eeecchhHHHHHHHHhH
Q 035185 10 NRFIEEWGAARENLE-HN--FRWTRRNLALVGLFGIA 43 (71)
Q Consensus 10 dPalerw~~~ren~~-~~--FR~Tprt~~~~~~~~~~ 43 (71)
|=+=..|+.+++..+ .. =+|.|.+...+.+|..+
T Consensus 19 ~l~q~AW~~lnDs~r~T~lcL~~~P~~IA~a~I~LA~ 55 (113)
T d2ivxa2 19 DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLAC 55 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeeecCcHHHHHHHHHHHH
Confidence 334467999998765 44 48999999999999876
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=12.98 E-value=1e+02 Score=16.16 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHhHHHHh
Q 035185 34 LALVGLFGIAVPVFIYKGIV 53 (71)
Q Consensus 34 ~~~~~~~~~~vP~~~yy~~~ 53 (71)
+.++++-++++|.+.-++-+
T Consensus 11 aIIgILaaia~P~~~~~~~~ 30 (158)
T d2pila_ 11 AIVGILAAVALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777778877766655
No 7
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.42 E-value=80 Score=17.83 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=25.9
Q ss_pred HHHHHhhc--cccceeecchhHHHHHHHHhHHHHH
Q 035185 15 EWGAAREN--LEHNFRWTRRNLALVGLFGIAVPVF 47 (71)
Q Consensus 15 rw~~~ren--~~~~FR~Tprt~~~~~~~~~~vP~~ 47 (71)
.|+.+++. .--.|.+||..+.+++++.......
T Consensus 30 a~~~lnds~~Td~~l~y~P~qIalaal~~a~~~~~ 64 (126)
T d1jkwa2 30 ADDFLNRIALTDAYLLYTPSQIALTAILSSASRAG 64 (126)
T ss_dssp HHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCeeeeeCHHHHHHHHHHHHHHHcC
Confidence 57777763 3447999999999999998877764
No 8
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=11.10 E-value=54 Score=18.45 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhcc
Q 035185 11 RFIEEWGAARENL 23 (71)
Q Consensus 11 Palerw~~~ren~ 23 (71)
.||..|..|||-+
T Consensus 83 sai~dwsdmreal 95 (101)
T d2qkwa1 83 SAITDWSDMREAL 95 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHH
Confidence 5899999999854
No 9
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.72 E-value=1.1e+02 Score=16.62 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHhHHHHh
Q 035185 34 LALVGLFGIAVPVFIYKGIV 53 (71)
Q Consensus 34 ~~~~~~~~~~vP~~~yy~~~ 53 (71)
.|..+.|.+++|+++..++.
T Consensus 15 lWkkis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLN 34 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56677888888988876554
No 10
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.82 E-value=67 Score=16.30 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=21.7
Q ss_pred HHHHHHHHhhccccceeecchhHHHHHHH
Q 035185 12 FIEEWGAARENLEHNFRWTRRNLALVGLF 40 (71)
Q Consensus 12 alerw~~~ren~~~~FR~Tprt~~~~~~~ 40 (71)
.|++++....+-...|+.+|+-..++..+
T Consensus 43 tL~~~g~l~~~~~g~y~lG~~l~~lg~~~ 71 (75)
T d1mkma1 43 VLEEKGFVLRKKDKRYVPGYKLIEYGSFV 71 (75)
T ss_dssp HHHHTTSEEECTTSCEEECTHHHHHHHHH
T ss_pred HHHHCCCEEECCCCCEeecHHHHHHHHHH
Confidence 46777777777677899999987776544
Done!